Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760970 | XP_003612880.1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760970 | sp|Q9FIQ5|TRN2_ARATH | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.18e-127 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760970 | G7KDS1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0760970 | 0.809759 | 1.614311e-50 | -8.615850e-47 |
| Msa0017670 | Msa0760970 | 0.814604 | 1.415409e-51 | -8.615850e-47 |
| Msa0017930 | Msa0760970 | 0.825748 | 3.957607e-54 | -8.615850e-47 |
| Msa0025160 | Msa0760970 | 0.836916 | 7.068905e-57 | -8.615850e-47 |
| Msa0025580 | Msa0760970 | 0.809137 | 2.195575e-50 | -8.615850e-47 |
| Msa0027280 | Msa0760970 | 0.821653 | 3.602130e-53 | -8.615850e-47 |
| Msa0034210 | Msa0760970 | 0.806210 | 9.188023e-50 | -8.615850e-47 |
| Msa0042640 | Msa0760970 | 0.862840 | 3.809979e-64 | -8.615850e-47 |
| Msa0048510 | Msa0760970 | 0.824624 | 7.296738e-54 | -8.615850e-47 |
| Msa0050660 | Msa0760970 | 0.852205 | 5.378068e-61 | -8.615850e-47 |
| Msa0050700 | Msa0760970 | 0.852655 | 4.003631e-61 | -8.615850e-47 |
| Msa0050790 | Msa0760970 | 0.850708 | 1.425812e-60 | -8.615850e-47 |
| Msa0072520 | Msa0760970 | 0.809786 | 1.592633e-50 | -8.615850e-47 |
| Msa0077340 | Msa0760970 | 0.807089 | 5.992164e-50 | -8.615850e-47 |
| Msa0077560 | Msa0760970 | 0.815492 | 8.994034e-52 | -8.615850e-47 |
| Msa0081980 | Msa0760970 | 0.822462 | 2.338838e-53 | -8.615850e-47 |
| Msa0094780 | Msa0760970 | 0.815273 | 1.006001e-51 | -8.615850e-47 |
| Msa0094790 | Msa0760970 | 0.874111 | 8.715740e-68 | -8.615850e-47 |
| Msa0098040 | Msa0760970 | 0.811357 | 7.290791e-51 | -8.615850e-47 |
| Msa0102240 | Msa0760970 | 0.822377 | 2.446967e-53 | -8.615850e-47 |
| Msa0611210 | Msa0760970 | 0.801492 | 8.775414e-49 | -8.615850e-47 |
| Msa0616210 | Msa0760970 | 0.839976 | 1.147928e-57 | -8.615850e-47 |
| Msa0619710 | Msa0760970 | 0.821814 | 3.304627e-53 | -8.615850e-47 |
| Msa0621710 | Msa0760970 | 0.814047 | 1.880012e-51 | -8.615850e-47 |
| Msa0644410 | Msa0760970 | 0.821804 | 3.323326e-53 | -8.615850e-47 |
| Msa0655700 | Msa0760970 | 0.823837 | 1.116780e-53 | -8.615850e-47 |
| Msa0657700 | Msa0760970 | 0.820458 | 6.786441e-53 | -8.615850e-47 |
| Msa0675330 | Msa0760970 | 0.850778 | 1.362412e-60 | -8.615850e-47 |
| Msa0693890 | Msa0760970 | 0.825164 | 5.442885e-54 | -8.615850e-47 |
| Msa0699540 | Msa0760970 | 0.847854 | 8.883696e-60 | -8.615850e-47 |
| Msa0702810 | Msa0760970 | 0.817460 | 3.260486e-52 | -8.615850e-47 |
| Msa0706150 | Msa0760970 | 0.818567 | 1.832890e-52 | -8.615850e-47 |
| Msa0709440 | Msa0760970 | 0.800592 | 1.340792e-48 | -8.615850e-47 |
| Msa0720410 | Msa0760970 | 0.887496 | 1.356293e-72 | -8.615850e-47 |
| Msa0723090 | Msa0760970 | 0.800744 | 1.248387e-48 | -8.615850e-47 |
| Msa0734250 | Msa0760970 | 0.815943 | 7.133906e-52 | -8.615850e-47 |
| Msa0735780 | Msa0760970 | 0.815152 | 1.070084e-51 | -8.615850e-47 |
| Msa0743440 | Msa0760970 | 0.800294 | 1.541636e-48 | -8.615850e-47 |
| Msa0754450 | Msa0760970 | 0.807013 | 6.220204e-50 | -8.615850e-47 |
| Msa0755930 | Msa0760970 | 0.802973 | 4.349829e-49 | -8.615850e-47 |
| Msa0760970 | Msa0761670 | 0.805799 | 1.121224e-49 | -8.615850e-47 |
| Msa0760970 | Msa0769690 | 0.801319 | 9.525029e-49 | -8.615850e-47 |
| Msa0760970 | Msa0773630 | 0.808709 | 2.711228e-50 | -8.615850e-47 |
| Msa0760970 | Msa0792370 | 0.844461 | 7.453722e-59 | -8.615850e-47 |
| Msa0760970 | Msa0803250 | 0.951755 | 1.044649e-109 | -8.615850e-47 |
| Msa0760970 | Msa0815970 | 0.818171 | 2.252980e-52 | -8.615850e-47 |
| Msa0760970 | Msa0828970 | 0.818160 | 2.266339e-52 | -8.615850e-47 |
| Msa0760970 | Msa0841590 | 0.990747 | 3.996650e-184 | -8.615850e-47 |
| Msa0760970 | Msa0859290 | 0.804248 | 2.366763e-49 | -8.615850e-47 |
| Msa0760970 | Msa0863620 | 0.814650 | 1.382699e-51 | -8.615850e-47 |
| Msa0760970 | Msa0915520 | 0.802559 | 5.297355e-49 | -8.615850e-47 |
| Msa0760970 | Msa0931590 | 0.810955 | 8.912610e-51 | -8.615850e-47 |
| Msa0760970 | Msa1009950 | 0.800940 | 1.138478e-48 | -8.615850e-47 |
| Msa0760970 | Msa1021590 | 0.836533 | 8.851729e-57 | -8.615850e-47 |
| Msa0760970 | Msa1029530 | 0.807167 | 5.769569e-50 | -8.615850e-47 |
| Msa0760970 | Msa1042160 | 0.804096 | 2.545162e-49 | -8.615850e-47 |
| Msa0760970 | Msa1042190 | 0.808270 | 3.362962e-50 | -8.615850e-47 |
| Msa0760970 | Msa1044680 | 0.805056 | 1.604588e-49 | -8.615850e-47 |
| Msa0760970 | Msa1059020 | 0.805582 | 1.245219e-49 | -8.615850e-47 |
| Msa0760970 | Msa1078820 | 0.840560 | 8.077497e-58 | -8.615850e-47 |
| Msa0760970 | Msa1081690 | 0.817970 | 2.501903e-52 | -8.615850e-47 |
| Msa0760970 | Msa1084530 | 0.803527 | 3.341720e-49 | -8.615850e-47 |
| Msa0760970 | Msa1105640 | 0.809265 | 2.060911e-50 | -8.615850e-47 |
| Msa0760970 | Msa1123210 | 0.833683 | 4.631948e-56 | -8.615850e-47 |
| Msa0760970 | Msa1123970 | 0.842721 | 2.174465e-58 | -8.615850e-47 |
| Msa0760970 | Msa1125820 | 0.800394 | 1.470916e-48 | -8.615850e-47 |
| Msa0760970 | Msa1125990 | 0.800411 | 1.459601e-48 | -8.615850e-47 |
| Msa0760970 | Msa1148960 | 0.811519 | 6.724478e-51 | -8.615850e-47 |
| Msa0760970 | Msa1166190 | 0.803465 | 3.441560e-49 | -8.615850e-47 |
| Msa0760970 | Msa1167470 | 0.804977 | 1.667020e-49 | -8.615850e-47 |
| Msa0760970 | Msa1169650 | 0.838974 | 2.090265e-57 | -8.615850e-47 |
| Msa0760970 | Msa1184890 | 0.844640 | 6.668793e-59 | -8.615850e-47 |
| Msa0760970 | Msa1192560 | 0.871579 | 6.137920e-67 | -8.615850e-47 |
| Msa0760970 | Msa1192590 | 0.871363 | 7.236725e-67 | -8.615850e-47 |
| Msa0760970 | Msa1208950 | 0.801453 | 8.939965e-49 | -8.615850e-47 |
| Msa0760970 | Msa1214350 | 0.804856 | 1.766694e-49 | -8.615850e-47 |
| Msa0760970 | Msa1221120 | 0.806918 | 6.514189e-50 | -8.615850e-47 |
| Msa0760970 | Msa1228580 | 0.821370 | 4.185477e-53 | -8.615850e-47 |
| Msa0760970 | Msa1228630 | 0.819200 | 1.315604e-52 | -8.615850e-47 |
| Msa0760970 | Msa1244240 | 0.800002 | 1.767433e-48 | -8.615850e-47 |
| Msa0760970 | Msa1263780 | 0.805917 | 1.059104e-49 | -8.615850e-47 |
| Msa0760970 | Msa1265450 | 0.816362 | 5.749872e-52 | -8.615850e-47 |
| Msa0760970 | Msa1265650 | 0.807762 | 4.314546e-50 | -8.615850e-47 |
| Msa0760970 | Msa1300460 | 0.802593 | 5.213199e-49 | -8.615850e-47 |
| Msa0760970 | Msa1303560 | 0.812903 | 3.353816e-51 | -8.615850e-47 |
| Msa0760970 | Msa1303650 | 0.819160 | 1.343446e-52 | -8.615850e-47 |
| Msa0760970 | Msa1308850 | 0.800858 | 1.183492e-48 | -8.615850e-47 |
| Msa0760970 | Msa1343170 | 0.801113 | 1.049653e-48 | -8.615850e-47 |
| Msa0760970 | Msa1343180 | 0.811392 | 7.162453e-51 | -8.615850e-47 |
| Msa0760970 | Msa1368750 | 0.810754 | 9.848664e-51 | -8.615850e-47 |
| Msa0760970 | Msa1372040 | 0.834994 | 2.172396e-56 | -8.615850e-47 |
| Msa0760970 | Msa1374790 | 0.814348 | 1.612587e-51 | -8.615850e-47 |
| Msa0760970 | Msa1382300 | 0.840295 | 9.476772e-58 | -8.615850e-47 |
| Msa0760970 | Msa1384150 | 0.819982 | 8.726433e-53 | -8.615850e-47 |
| Msa0760970 | Msa1393780 | 0.826856 | 2.156245e-54 | -8.615850e-47 |
| Msa0760970 | Msa1405460 | 0.825045 | 5.806630e-54 | -8.615850e-47 |
| Msa0760970 | Msa1409410 | 0.831808 | 1.352937e-55 | -8.615850e-47 |
| Msa0760970 | Msa1410160 | 0.804057 | 2.592763e-49 | -8.615850e-47 |
| Msa0760970 | Msa1415540 | 0.849879 | 2.434910e-60 | -8.615850e-47 |
| Msa0760970 | Msa1417370 | 0.819691 | 1.016783e-52 | -8.615850e-47 |
| Msa0760970 | Msa1427100 | 0.841470 | 4.660219e-58 | -8.615850e-47 |
| Msa0760970 | Msa1429070 | 0.806378 | 8.470850e-50 | -8.615850e-47 |
| Msa0760970 | Msa1435960 | 0.833449 | 5.298982e-56 | -8.615850e-47 |
| Msa0760970 | Msa1440630 | 0.848526 | 5.794790e-60 | -8.615850e-47 |
| Msa0760970 | Msa1451820 | 0.815226 | 1.030400e-51 | -8.615850e-47 |
| Msa0760970 | Msa1452140 | 0.802236 | 6.174308e-49 | -8.615850e-47 |
| Msa0121330 | Msa0760970 | 0.829325 | 5.484749e-55 | -8.615850e-47 |
| Msa0123070 | Msa0760970 | 0.834129 | 3.583018e-56 | -8.615850e-47 |
| Msa0125360 | Msa0760970 | 0.805183 | 1.509643e-49 | -8.615850e-47 |
| Msa0128310 | Msa0760970 | 0.808188 | 3.501047e-50 | -8.615850e-47 |
| Msa0128460 | Msa0760970 | 0.804197 | 2.424384e-49 | -8.615850e-47 |
| Msa0140130 | Msa0760970 | 0.850359 | 1.786565e-60 | -8.615850e-47 |
| Msa0140280 | Msa0760970 | 0.833325 | 5.690031e-56 | -8.615850e-47 |
| Msa0143670 | Msa0760970 | 0.814667 | 1.370915e-51 | -8.615850e-47 |
| Msa0146650 | Msa0760970 | 0.807804 | 4.226963e-50 | -8.615850e-47 |
| Msa0161930 | Msa0760970 | 0.821482 | 3.944366e-53 | -8.615850e-47 |
| Msa0174290 | Msa0760970 | 0.823477 | 1.356530e-53 | -8.615850e-47 |
| Msa0174440 | Msa0760970 | 0.809998 | 1.434028e-50 | -8.615850e-47 |
| Msa0176060 | Msa0760970 | 0.808263 | 3.375436e-50 | -8.615850e-47 |
| Msa0178450 | Msa0760970 | 0.832388 | 9.725565e-56 | -8.615850e-47 |
| Msa0188610 | Msa0760970 | 0.832668 | 8.288573e-56 | -8.615850e-47 |
| Msa0190570 | Msa0760970 | 0.803446 | 3.472080e-49 | -8.615850e-47 |
| Msa0200050 | Msa0760970 | 0.813441 | 2.555349e-51 | -8.615850e-47 |
| Msa0203080 | Msa0760970 | 0.810298 | 1.235497e-50 | -8.615850e-47 |
| Msa0230800 | Msa0760970 | 0.832763 | 7.852449e-56 | -8.615850e-47 |
| Msa0230840 | Msa0760970 | 0.802643 | 5.090930e-49 | -8.615850e-47 |
| Msa0230870 | Msa0760970 | 0.828642 | 8.028013e-55 | -8.615850e-47 |
| Msa0232760 | Msa0760970 | 0.810755 | 9.846820e-51 | -8.615850e-47 |
| Msa0367690 | Msa0760970 | 0.849745 | 2.654817e-60 | -8.615850e-47 |
| Msa0380670 | Msa0760970 | 0.825279 | 5.113057e-54 | -8.615850e-47 |
| Msa0415450 | Msa0760970 | 0.851484 | 8.612292e-61 | -8.615850e-47 |
| Msa0426530 | Msa0760970 | 0.808813 | 2.574948e-50 | -8.615850e-47 |
| Msa0430300 | Msa0760970 | 0.819811 | 9.548304e-53 | -8.615850e-47 |
| Msa0432010 | Msa0760970 | 0.812721 | 3.676112e-51 | -8.615850e-47 |
| Msa0436910 | Msa0760970 | 0.816995 | 4.147915e-52 | -8.615850e-47 |
| Msa0447750 | Msa0760970 | 0.803041 | 4.211258e-49 | -8.615850e-47 |
| Msa0457570 | Msa0760970 | 0.819906 | 9.081864e-53 | -8.615850e-47 |
| Msa0460070 | Msa0760970 | 0.843041 | 1.788334e-58 | -8.615850e-47 |
| Msa0472950 | Msa0760970 | 0.801474 | 8.852811e-49 | -8.615850e-47 |
| Msa0270340 | Msa0760970 | 0.833331 | 5.672251e-56 | -8.615850e-47 |
| Msa0284800 | Msa0760970 | 0.846011 | 2.838558e-59 | -8.615850e-47 |
| Msa0307670 | Msa0760970 | 0.839835 | 1.249339e-57 | -8.615850e-47 |
| Msa0313900 | Msa0760970 | 0.803554 | 3.298613e-49 | -8.615850e-47 |
| Msa0330520 | Msa0760970 | 0.854337 | 1.316224e-61 | -8.615850e-47 |
| Msa0338340 | Msa0760970 | 0.803546 | 3.310663e-49 | -8.615850e-47 |
| Msa0517250 | Msa0760970 | 0.827140 | 1.844222e-54 | -8.615850e-47 |
| Msa0519750 | Msa0760970 | 0.839675 | 1.375354e-57 | -8.615850e-47 |
| Msa0519820 | Msa0760970 | 0.840930 | 6.463585e-58 | -8.615850e-47 |
| Msa0519830 | Msa0760970 | 0.838009 | 3.709021e-57 | -8.615850e-47 |
| Msa0520870 | Msa0760970 | 0.806674 | 7.335437e-50 | -8.615850e-47 |
| Msa0528570 | Msa0760970 | 0.849240 | 3.670680e-60 | -8.615850e-47 |
| Msa0529030 | Msa0760970 | 0.825516 | 4.492144e-54 | -8.615850e-47 |
| Msa0541300 | Msa0760970 | 0.858915 | 5.934042e-63 | -8.615850e-47 |
| Msa0541310 | Msa0760970 | 0.858459 | 8.120130e-63 | -8.615850e-47 |
| Msa0562350 | Msa0760970 | 0.804116 | 2.520785e-49 | -8.615850e-47 |
| Msa0570010 | Msa0760970 | 0.814114 | 1.816449e-51 | -8.615850e-47 |
| Msa0580810 | Msa0760970 | 0.832139 | 1.121147e-55 | -8.615850e-47 |
| Msa0585020 | Msa0760970 | 0.848240 | 6.953297e-60 | -8.615850e-47 |
| Msa0597270 | Msa0760970 | 0.860045 | 2.715552e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760970 | MtrunA17_Chr5g0411131 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Msa0760970 | MtrunA17_Chr8g0366571 | 75.093 | 269 | 67 | 0 | 1 | 269 | 1 | 269 | 2.20e-151 | 423 |
| Msa0760970 | MtrunA17_Chr8g0389221 | 50.373 | 268 | 133 | 0 | 1 | 268 | 1 | 268 | 6.46e-100 | 293 |
| Msa0760970 | MtrunA17_Chr4g0030021 | 45.956 | 272 | 141 | 3 | 1 | 266 | 1 | 272 | 1.67e-78 | 239 |
| Msa0760970 | MtrunA17_Chr4g0073251 | 45.318 | 267 | 142 | 3 | 1 | 264 | 1 | 266 | 3.02e-76 | 232 |
| Msa0760970 | MtrunA17_Chr1g0199961 | 41.445 | 263 | 144 | 3 | 4 | 266 | 5 | 257 | 1.64e-66 | 208 |
| Msa0760970 | MtrunA17_Chr6g0462061 | 41.016 | 256 | 141 | 3 | 4 | 259 | 5 | 250 | 1.79e-66 | 208 |
| Msa0760970 | MtrunA17_Chr8g0386471 | 32.171 | 258 | 169 | 3 | 1 | 255 | 3 | 257 | 3.04e-55 | 179 |
| Msa0760970 | MtrunA17_Chr4g0062101 | 34.231 | 260 | 168 | 2 | 3 | 259 | 6 | 265 | 5.47e-54 | 176 |
| Msa0760970 | MtrunA17_Chr5g0447681 | 28.458 | 253 | 155 | 6 | 5 | 252 | 50 | 281 | 1.08e-29 | 114 |
| Msa0760970 | MtrunA17_Chr2g0307641 | 37.662 | 77 | 46 | 1 | 182 | 256 | 3 | 79 | 4.03e-16 | 72.0 |
| Msa0760970 | MtrunA17_Chr2g0307651 | 27.564 | 156 | 112 | 1 | 3 | 158 | 4 | 158 | 3.56e-13 | 66.2 |
| Msa0760970 | MtrunA17_Chr5g0447671 | 29.771 | 131 | 68 | 4 | 118 | 243 | 47 | 158 | 1.31e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760970 | AT5G46700.1 | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.21e-128 | 365 |
| Msa0760970 | AT2G19580.1 | 57.249 | 269 | 114 | 1 | 1 | 268 | 1 | 269 | 1.72e-100 | 295 |
| Msa0760970 | AT3G45600.1 | 44.528 | 265 | 141 | 3 | 1 | 259 | 1 | 265 | 1.82e-81 | 247 |
| Msa0760970 | AT4G28050.1 | 42.636 | 258 | 146 | 1 | 4 | 259 | 5 | 262 | 4.43e-78 | 237 |
| Msa0760970 | AT4G30430.1 | 41.603 | 262 | 151 | 1 | 3 | 262 | 4 | 265 | 2.43e-76 | 233 |
| Msa0760970 | AT2G23810.1 | 42.966 | 263 | 147 | 2 | 4 | 263 | 5 | 267 | 3.22e-76 | 233 |
| Msa0760970 | AT5G60220.1 | 43.893 | 262 | 141 | 3 | 1 | 256 | 1 | 262 | 2.11e-63 | 202 |
| Msa0760970 | AT1G18520.1 | 38.550 | 262 | 153 | 4 | 3 | 257 | 4 | 264 | 5.32e-61 | 194 |
| Msa0760970 | AT3G12090.1 | 40.316 | 253 | 139 | 4 | 4 | 256 | 5 | 245 | 1.33e-58 | 188 |
| Msa0760970 | AT4G23410.1 | 37.066 | 259 | 152 | 3 | 3 | 261 | 4 | 251 | 3.23e-55 | 179 |
| Msa0760970 | AT1G63260.2 | 32.171 | 258 | 167 | 3 | 1 | 257 | 3 | 253 | 2.83e-54 | 176 |
| Msa0760970 | AT1G63260.6 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0760970 | AT1G63260.1 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0760970 | AT1G63260.3 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 4.55e-51 | 169 |
| Msa0760970 | AT1G63260.5 | 32.719 | 217 | 144 | 2 | 1 | 216 | 3 | 218 | 3.59e-46 | 154 |
| Msa0760970 | AT3G45600.2 | 43.275 | 171 | 92 | 2 | 1 | 166 | 1 | 171 | 3.08e-43 | 146 |
| Msa0760970 | AT2G03840.1 | 29.707 | 239 | 160 | 4 | 19 | 251 | 32 | 268 | 1.45e-37 | 134 |
| Msa0760970 | AT1G63260.4 | 30.337 | 178 | 123 | 1 | 1 | 178 | 3 | 179 | 2.28e-33 | 121 |
| Msa0760970 | AT5G23030.1 | 27.132 | 258 | 183 | 2 | 1 | 256 | 2 | 256 | 3.00e-31 | 117 |
| Msa0760970 | AT5G57810.1 | 26.316 | 133 | 82 | 1 | 131 | 247 | 173 | 305 | 4.51e-16 | 77.0 |
Find 48 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTAATAGGGCTTATT+TGG | 0.104253 | 5_2:+17851219 | Msa0760970:CDS |
| CTGGTCTCATTGGTTCCTTT+TGG | 0.214283 | 5_2:+17851083 | Msa0760970:CDS |
| CTCTTAGTTGTGTCTCTTGC+TGG | 0.223492 | 5_2:+17851064 | Msa0760970:CDS |
| ATGTCTGCTGCATTGTTTAT+TGG | 0.243435 | 5_2:-17851803 | None:intergenic |
| TATTATCTTGCTAGTTTGTT+TGG | 0.252856 | 5_2:+17851153 | Msa0760970:CDS |
| TAGCAACTAGGTAGAATATT+AGG | 0.309164 | 5_2:-17851120 | None:intergenic |
| TATTCCAAATAAGCCCTATT+AGG | 0.318593 | 5_2:-17851223 | None:intergenic |
| TTAATTGTGGTTTATTTGAT+TGG | 0.318944 | 5_2:+17851959 | Msa0760970:CDS |
| TTTAACATTGGTGATGAAAT+TGG | 0.322140 | 5_2:+17852087 | Msa0760970:three_prime_UTR |
| CAATCATTGGTGCTGGAATC+TGG | 0.324358 | 5_2:+17850972 | Msa0760970:CDS |
| ATGGTATGATTGAACCTAAT+AGG | 0.329364 | 5_2:+17851209 | Msa0760970:CDS |
| GCGAAAGAGATCCTCAGTTT+TGG | 0.353207 | 5_2:-17852002 | None:intergenic |
| GTGTCTCTTGCTGGTCTCAT+TGG | 0.354014 | 5_2:+17851073 | Msa0760970:CDS |
| GGCTTATTTGGAATACCGTT+TGG | 0.361064 | 5_2:+17851231 | Msa0760970:CDS |
| CTGGTTTGTTGGCAAATCTT+AGG | 0.375317 | 5_2:+17851888 | Msa0760970:CDS |
| CATTTGTGAACCCAACATAC+TGG | 0.397625 | 5_2:+17851774 | Msa0760970:CDS |
| TTGGACTAATCCAGTATGTT+GGG | 0.406980 | 5_2:-17851784 | None:intergenic |
| CAGATTCCAGCACCAATGAT+TGG | 0.408669 | 5_2:-17850971 | None:intergenic |
| AGTTGTAACAAAGTTGTGTT+TGG | 0.428684 | 5_2:-17851850 | None:intergenic |
| AGATTCCAGCACCAATGATT+GGG | 0.447069 | 5_2:-17850970 | None:intergenic |
| TGGTATGATTGAACCTAATA+GGG | 0.447157 | 5_2:+17851210 | Msa0760970:CDS |
| AACTGTGACTCATGCAAAGC+TGG | 0.452176 | 5_2:+17851869 | Msa0760970:CDS |
| GCAATGAGCAACAACATCAT+AGG | 0.463723 | 5_2:+17850914 | Msa0760970:CDS |
| ATTGGACTAATCCAGTATGT+TGG | 0.468680 | 5_2:-17851785 | None:intergenic |
| GTGTACATGGTTACTCTTCG+TGG | 0.469403 | 5_2:+17851184 | Msa0760970:CDS |
| ATCCTCTCAATCCCAATCAT+TGG | 0.477309 | 5_2:+17850959 | Msa0760970:CDS |
| CTCATGCAAAGCTGGTTTGT+TGG | 0.480759 | 5_2:+17851877 | Msa0760970:CDS |
| TCAATCCCAATCATTGGTGC+TGG | 0.481205 | 5_2:+17850965 | Msa0760970:CDS |
| CAGACATGGATTGTCTTCAA+TGG | 0.495893 | 5_2:+17851819 | Msa0760970:CDS |
| CAATGGCCAGTCATAATCCT+AGG | 0.501117 | 5_2:+17851034 | Msa0760970:CDS |
| TTGAGAGGATTACAGCTACT+AGG | 0.501297 | 5_2:-17850946 | None:intergenic |
| ATGGTTACTCTTCGTGGTCA+TGG | 0.501755 | 5_2:+17851190 | Msa0760970:CDS |
| TGGCAAATCTTAGGAAGGAA+TGG | 0.515362 | 5_2:+17851897 | Msa0760970:CDS |
| GAGACATGAGATTCTCCAAA+AGG | 0.523414 | 5_2:-17851098 | None:intergenic |
| CACCAATGATTGGGATTGAG+AGG | 0.525563 | 5_2:-17850961 | None:intergenic |
| AGCATGTAAGATGTAAAGCT+TGG | 0.526590 | 5_2:+17852060 | Msa0760970:three_prime_UTR |
| GTGTATGCACATTGTGTTGG+TGG | 0.546354 | 5_2:-17851752 | None:intergenic |
| TGCACGTCTTACACCAATGC+AGG | 0.553446 | 5_2:+17851387 | Msa0760970:CDS |
| AATAAACAATGCAGCAGACA+TGG | 0.558636 | 5_2:+17851805 | Msa0760970:CDS |
| TTTGTTGGCAAATCTTAGGA+AGG | 0.565313 | 5_2:+17851892 | Msa0760970:CDS |
| CTCTTTCGCAAGTACAAACA+AGG | 0.567497 | 5_2:+17852016 | Msa0760970:CDS |
| CTAGGATTATGACTGGCCAT+TGG | 0.581862 | 5_2:-17851033 | None:intergenic |
| CATGTGTAAAATTTCTCCAA+TGG | 0.584274 | 5_2:+17851017 | Msa0760970:CDS |
| TAAGCACAAGCATAGCAACT+AGG | 0.591892 | 5_2:-17851132 | None:intergenic |
| AGAACACCTAGGATTATGAC+TGG | 0.617019 | 5_2:-17851040 | None:intergenic |
| AATGTGTATGCACATTGTGT+TGG | 0.656084 | 5_2:-17851755 | None:intergenic |
| CAACTAAGAGAAGAACACCT+AGG | 0.686330 | 5_2:-17851051 | None:intergenic |
| CTTAGTGAAACAAATATGTG+TGG | 0.704201 | 5_2:+17851322 | Msa0760970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_2:17851403-17851422 | None:intergenic | 20.0% |
| !! | TAAAGGGGAAAAAAAATTAT+TGG | - | chr5_2:17851705-17851724 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_2:17851720-17851739 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_2:17851721-17851740 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_2:17851720-17851739 | Msa0760970:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_2:17851959-17851978 | Msa0760970:CDS | 20.0% |
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_2:17851403-17851422 | None:intergenic | 20.0% |
| !! | TAAAGGGGAAAAAAAATTAT+TGG | - | chr5_2:17851705-17851724 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_2:17851720-17851739 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_2:17851721-17851740 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_2:17851720-17851739 | Msa0760970:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_2:17851959-17851978 | Msa0760970:CDS | 20.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_2:17851153-17851172 | Msa0760970:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_2:17851171-17851190 | Msa0760970:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_2:17851282-17851301 | Msa0760970:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_2:17851722-17851741 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_2:17851719-17851738 | Msa0760970:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_2:17852087-17852106 | Msa0760970:three_prime_UTR | 25.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_2:17851153-17851172 | Msa0760970:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_2:17851171-17851190 | Msa0760970:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_2:17851282-17851301 | Msa0760970:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_2:17851722-17851741 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_2:17851719-17851738 | Msa0760970:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_2:17852087-17852106 | Msa0760970:three_prime_UTR | 25.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_2:17851017-17851036 | Msa0760970:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_2:17851123-17851142 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_2:17851209-17851228 | Msa0760970:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_2:17851210-17851229 | Msa0760970:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_2:17851226-17851245 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_2:17851281-17851300 | Msa0760970:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_2:17851322-17851341 | Msa0760970:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_2:17851348-17851367 | Msa0760970:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_2:17851853-17851872 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_2:17851946-17851965 | Msa0760970:CDS | 30.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_2:17851017-17851036 | Msa0760970:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_2:17851123-17851142 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_2:17851209-17851228 | Msa0760970:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_2:17851210-17851229 | Msa0760970:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_2:17851226-17851245 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_2:17851281-17851300 | Msa0760970:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_2:17851322-17851341 | Msa0760970:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_2:17851348-17851367 | Msa0760970:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_2:17851853-17851872 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_2:17851946-17851965 | Msa0760970:CDS | 30.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_2:17851010-17851029 | None:intergenic | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_2:17851219-17851238 | Msa0760970:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_2:17851244-17851263 | Msa0760970:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_2:17851245-17851264 | Msa0760970:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_2:17851249-17851268 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_2:17851462-17851481 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_2:17851492-17851511 | Msa0760970:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_2:17851542-17851561 | Msa0760970:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_2:17851758-17851777 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_2:17851787-17851806 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_2:17851788-17851807 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_2:17851806-17851825 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_2:17851805-17851824 | Msa0760970:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_2:17851892-17851911 | Msa0760970:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_2:17851975-17851994 | Msa0760970:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_2:17851991-17852010 | Msa0760970:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_2:17852060-17852079 | Msa0760970:three_prime_UTR | 35.0% | |
| !!! | AAGCTTGGTGCTTTTAACAT+TGG | + | chr5_2:17852075-17852094 | Msa0760970:three_prime_UTR | 35.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_2:17851010-17851029 | None:intergenic | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_2:17851219-17851238 | Msa0760970:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_2:17851244-17851263 | Msa0760970:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_2:17851245-17851264 | Msa0760970:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_2:17851249-17851268 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_2:17851462-17851481 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_2:17851492-17851511 | Msa0760970:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_2:17851542-17851561 | Msa0760970:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_2:17851758-17851777 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_2:17851787-17851806 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_2:17851788-17851807 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_2:17851806-17851825 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_2:17851805-17851824 | Msa0760970:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_2:17851892-17851911 | Msa0760970:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_2:17851975-17851994 | Msa0760970:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_2:17851991-17852010 | Msa0760970:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_2:17852060-17852079 | Msa0760970:three_prime_UTR | 35.0% | |
| !!! | AAGCTTGGTGCTTTTAACAT+TGG | + | chr5_2:17852075-17852094 | Msa0760970:three_prime_UTR | 35.0% |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_2:17850914-17850933 | Msa0760970:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_2:17850949-17850968 | None:intergenic | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_2:17850959-17850978 | Msa0760970:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_2:17850973-17850992 | None:intergenic | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_2:17851043-17851062 | None:intergenic | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_2:17851054-17851073 | None:intergenic | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_2:17851101-17851120 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_2:17851135-17851154 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_2:17851231-17851250 | Msa0760970:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_2:17851354-17851373 | Msa0760970:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_2:17851522-17851541 | Msa0760970:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_2:17851549-17851568 | Msa0760970:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_2:17851553-17851572 | Msa0760970:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_2:17851774-17851793 | Msa0760970:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_2:17851819-17851838 | Msa0760970:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_2:17851888-17851907 | Msa0760970:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_2:17851897-17851916 | Msa0760970:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_2:17852016-17852035 | Msa0760970:CDS | 40.0% | |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_2:17850914-17850933 | Msa0760970:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_2:17850949-17850968 | None:intergenic | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_2:17850959-17850978 | Msa0760970:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_2:17850973-17850992 | None:intergenic | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_2:17851043-17851062 | None:intergenic | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_2:17851054-17851073 | None:intergenic | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_2:17851101-17851120 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_2:17851135-17851154 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_2:17851231-17851250 | Msa0760970:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_2:17851354-17851373 | Msa0760970:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_2:17851522-17851541 | Msa0760970:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_2:17851549-17851568 | Msa0760970:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_2:17851553-17851572 | Msa0760970:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_2:17851774-17851793 | Msa0760970:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_2:17851819-17851838 | Msa0760970:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_2:17851888-17851907 | Msa0760970:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_2:17851897-17851916 | Msa0760970:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_2:17852016-17852035 | Msa0760970:CDS | 40.0% | |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_2:17850964-17850983 | None:intergenic | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_2:17850965-17850984 | Msa0760970:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_2:17850974-17850993 | None:intergenic | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_2:17850972-17850991 | Msa0760970:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_2:17851036-17851055 | None:intergenic | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_2:17851034-17851053 | Msa0760970:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_2:17851064-17851083 | Msa0760970:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_2:17851083-17851102 | Msa0760970:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_2:17851184-17851203 | Msa0760970:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_2:17851190-17851209 | Msa0760970:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_2:17851496-17851515 | Msa0760970:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_2:17851755-17851774 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_2:17851869-17851888 | Msa0760970:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_2:17851877-17851896 | Msa0760970:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_2:17852005-17852024 | None:intergenic | 45.0% |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_2:17850964-17850983 | None:intergenic | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_2:17850965-17850984 | Msa0760970:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_2:17850974-17850993 | None:intergenic | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_2:17850972-17850991 | Msa0760970:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_2:17851036-17851055 | None:intergenic | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_2:17851034-17851053 | Msa0760970:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_2:17851064-17851083 | Msa0760970:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_2:17851083-17851102 | Msa0760970:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_2:17851184-17851203 | Msa0760970:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_2:17851190-17851209 | Msa0760970:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_2:17851496-17851515 | Msa0760970:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_2:17851755-17851774 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_2:17851869-17851888 | Msa0760970:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_2:17851877-17851896 | Msa0760970:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_2:17852005-17852024 | None:intergenic | 45.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_2:17851073-17851092 | Msa0760970:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_2:17851387-17851406 | Msa0760970:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_2:17851501-17851520 | Msa0760970:intron | 50.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_2:17851073-17851092 | Msa0760970:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_2:17851387-17851406 | Msa0760970:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_2:17851501-17851520 | Msa0760970:intron | 50.0% |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_2:17851508-17851527 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_2:17851509-17851528 | None:intergenic | 55.0% | |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_2:17851508-17851527 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_2:17851509-17851528 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17850911 | 17852179 | 17850911 | ID=Msa0760970;Name=Msa0760970 |
| chr5_2 | mRNA | 17850911 | 17852179 | 17850911 | ID=Msa0760970-mRNA-1;Parent=Msa0760970;Name=Msa0760970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|131|269 |
| chr5_2 | exon | 17850911 | 17851408 | 17850911 | ID=Msa0760970-mRNA-1:exon:7797;Parent=Msa0760970-mRNA-1 |
| chr5_2 | exon | 17851737 | 17852179 | 17851737 | ID=Msa0760970-mRNA-1:exon:7798;Parent=Msa0760970-mRNA-1 |
| chr5_2 | CDS | 17850911 | 17851408 | 17850911 | ID=Msa0760970-mRNA-1:cds;Parent=Msa0760970-mRNA-1 |
| chr5_2 | CDS | 17851737 | 17852048 | 17851737 | ID=Msa0760970-mRNA-1:cds;Parent=Msa0760970-mRNA-1 |
| chr5_2 | three_prime_UTR | 17852049 | 17852179 | 17852049 | ID=Msa0760970-mRNA-1:three_prime_utr;Parent=Msa0760970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
