AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464470 MtrunA17_Chr2g0285121 93.968 630 37 1 4 632 156 785 0.0 1207
Msa1464470 MtrunA17_Chr2g0285111 87.917 629 76 0 4 632 160 788 0.0 1134
Msa1464470 MtrunA17_Chr3g0120521 43.740 631 333 12 4 629 156 769 6.13e-177 521
Msa1464470 MtrunA17_Chr4g0076611 43.128 633 333 10 4 629 81 693 5.66e-176 516
Msa1464470 MtrunA17_Chr4g0026641 45.086 641 311 14 4 630 141 754 1.83e-172 509
Msa1464470 MtrunA17_Chr5g0423261 41.601 637 347 12 4 631 3 623 1.94e-167 492
Msa1464470 MtrunA17_Chr4g0057461 41.860 645 341 15 3 630 2 629 1.96e-167 492
Msa1464470 MtrunA17_Chr4g0037221 43.210 648 330 14 4 630 138 768 2.46e-167 497
Msa1464470 MtrunA17_Chr4g0057531 43.574 638 337 12 4 632 156 779 2.96e-167 497
Msa1464470 MtrunA17_Chr4g0070391 43.906 640 327 13 4 631 134 753 5.69e-164 488
Msa1464470 MtrunA17_Chr4g0057481 41.693 638 343 14 4 631 73 691 2.14e-163 484
Msa1464470 MtrunA17_Chr4g0057491 41.066 638 351 13 3 631 2 623 2.81e-163 481
Msa1464470 MtrunA17_Chr4g0057471 40.689 639 351 12 4 632 91 711 4.23e-163 484
Msa1464470 MtrunA17_Chr4g0053781 43.214 641 330 15 4 632 139 757 1.13e-161 481
Msa1464470 MtrunA17_Chr1g0204321 42.679 642 332 11 4 631 159 778 1.72e-161 482
Msa1464470 MtrunA17_Chr4g0057511 40.694 634 345 14 9 631 4 617 2.87e-160 473
Msa1464470 MtrunA17_Chr2g0300751 42.097 639 337 16 4 631 158 774 1.04e-157 472
Msa1464470 MtrunA17_Chr5g0401511 42.212 642 336 14 4 632 144 763 5.41e-157 470
Msa1464470 MtrunA17_Chr1g0152771 42.331 652 328 17 4 631 137 764 2.99e-156 468
Msa1464470 MtrunA17_Chr4g0020651 42.613 643 332 16 4 632 140 759 2.98e-153 460
Msa1464470 MtrunA17_Chr7g0262161 41.186 641 344 13 4 631 142 762 1.33e-152 458
Msa1464470 MtrunA17_Chr5g0407701 40.845 639 330 15 4 629 146 749 2.18e-151 455
Msa1464470 MtrunA17_Chr8g0369891 40.345 637 334 17 4 629 151 752 3.63e-150 452
Msa1464470 MtrunA17_Chr3g0134621 41.731 647 306 13 4 631 143 737 4.72e-150 451
Msa1464470 MtrunA17_Chr4g0057061 42.254 639 319 16 4 631 177 776 1.52e-148 448
Msa1464470 MtrunA17_Chr8g0344971 42.040 647 331 14 4 632 142 762 5.05e-148 447
Msa1464470 MtrunA17_Chr7g0246461 40.930 645 308 16 4 632 155 742 3.02e-147 444
Msa1464470 MtrunA17_Chr8g0377961 41.641 646 328 16 4 629 158 774 1.58e-145 441
Msa1464470 MtrunA17_Chr3g0136151 40.000 655 330 19 4 631 145 763 2.99e-142 432
Msa1464470 MtrunA17_Chr8g0344331 41.069 655 333 20 4 632 150 777 5.98e-142 432
Msa1464470 MtrunA17_Chr7g0250371 40.487 657 335 20 4 629 153 784 5.22e-139 424
Msa1464470 MtrunA17_Chr3g0143251 41.258 652 323 19 4 630 149 765 1.49e-138 422
Msa1464470 MtrunA17_Chr7g0250411 39.137 649 354 18 4 629 153 783 1.64e-137 421
Msa1464470 MtrunA17_Chr8g0354741 38.640 647 348 13 1 632 24 636 7.42e-135 409
Msa1464470 MtrunA17_Chr7g0250391 38.485 647 361 15 4 629 152 782 1.04e-133 410
Msa1464470 MtrunA17_Chr7g0250481 38.045 665 354 17 4 629 152 797 7.33e-131 403
Msa1464470 MtrunA17_Chr1g0170081 39.246 637 324 19 4 629 146 730 5.04e-128 394
Msa1464470 MtrunA17_Chr5g0439271 39.677 620 317 16 41 629 8 601 1.76e-127 388
Msa1464470 MtrunA17_Chr7g0250331 39.143 677 338 21 4 629 153 806 4.10e-127 394
Msa1464470 MtrunA17_Chr7g0276151 38.710 651 329 17 4 630 152 756 3.16e-126 390
Msa1464470 MtrunA17_Chr7g0227991 37.519 645 331 18 4 632 148 736 3.73e-126 389
Msa1464470 MtrunA17_Chr8g0354771 38.438 653 349 17 4 632 143 766 9.83e-126 389
Msa1464470 MtrunA17_Chr8g0351011 38.871 638 336 17 4 629 156 751 1.35e-125 388
Msa1464470 MtrunA17_Chr8g0345981 38.295 645 348 20 4 630 146 758 9.77e-124 384
Msa1464470 MtrunA17_Chr5g0398241 39.938 641 331 18 4 631 156 755 6.74e-123 381
Msa1464470 MtrunA17_Chr7g0266051 38.378 641 337 19 4 629 108 705 8.79e-123 380
Msa1464470 MtrunA17_Chr8g0334521 38.125 640 327 21 4 629 149 733 2.62e-122 379
Msa1464470 MtrunA17_Chr7g0246451 38.028 639 340 19 4 629 150 745 3.89e-122 379
Msa1464470 MtrunA17_Chr5g0398401 39.720 642 333 18 4 632 156 756 7.56e-122 379
Msa1464470 MtrunA17_Chr5g0398331 40.126 633 325 18 11 631 162 752 7.78e-122 379
Msa1464470 MtrunA17_Chr6g0470851 37.559 639 331 21 4 629 146 729 8.30e-122 378
Msa1464470 MtrunA17_Chr1g0146271 37.129 641 340 17 1 629 143 732 1.60e-121 377
Msa1464470 MtrunA17_Chr6g0470881 37.969 640 327 21 4 629 146 729 1.62e-121 377
Msa1464470 MtrunA17_Chr1g0189251 38.665 644 337 19 4 630 152 754 5.02e-121 377
Msa1464470 MtrunA17_Chr8g0345971 37.867 647 342 17 4 630 153 759 6.74e-121 376
Msa1464470 MtrunA17_Chr1g0146251 36.574 648 330 17 4 629 146 734 5.28e-120 373
Msa1464470 MtrunA17_Chr7g0248871 39.137 649 336 19 4 630 153 764 7.64e-119 371
Msa1464470 MtrunA17_Chr8g0345991 37.846 650 342 18 4 630 144 754 9.61e-119 370
Msa1464470 MtrunA17_Chr1g0189561 38.779 655 330 20 4 630 150 761 2.33e-118 370
Msa1464470 MtrunA17_Chr5g0398351 38.534 641 342 15 4 632 907 1507 3.11e-117 382
Msa1464470 MtrunA17_Chr5g0398351 37.888 644 341 14 4 632 137 736 8.43e-116 378
Msa1464470 MtrunA17_Chr5g0398311 39.690 645 321 20 4 631 155 748 8.65e-115 360
Msa1464470 MtrunA17_Chr3g0079971 35.413 641 349 16 4 631 145 733 5.80e-114 357
Msa1464470 MtrunA17_Chr8g0334491 36.223 646 334 19 4 631 144 729 1.14e-112 354
Msa1464470 MtrunA17_Chr2g0303881 37.674 645 350 17 4 630 116 726 2.02e-110 348
Msa1464470 MtrunA17_Chr8g0345961 36.350 652 354 19 4 630 142 757 1.53e-105 336
Msa1464470 MtrunA17_Chr8g0376841 39.602 452 244 11 4 454 160 583 7.36e-97 308
Msa1464470 MtrunA17_Chr5g0447171 36.750 517 262 9 166 632 9 510 6.90e-92 293
Msa1464470 MtrunA17_Chr2g0298601 34.591 636 354 22 4 594 166 784 1.71e-88 292
Msa1464470 MtrunA17_Chr4g0071871 34.328 670 370 25 4 627 166 811 4.47e-88 291
Msa1464470 MtrunA17_Chr2g0301011 37.354 514 226 13 1 506 45 470 2.53e-87 281
Msa1464470 MtrunA17_Chr7g0261691 40.643 342 193 5 1 341 14 346 5.64e-87 275
Msa1464470 MtrunA17_Chr7g0248861 38.943 511 273 16 4 502 156 639 1.49e-82 277
Msa1464470 MtrunA17_Chr7g0248861 46.491 228 106 8 4 229 646 859 6.55e-39 153
Msa1464470 MtrunA17_Chr2g0302951 33.333 690 365 22 4 632 186 841 1.45e-80 272
Msa1464470 MtrunA17_Chr4g0075331 31.204 673 390 21 4 629 91 737 3.41e-78 263
Msa1464470 MtrunA17_Chr8g0380961 32.090 670 372 25 14 629 205 845 3.19e-73 252
Msa1464470 MtrunA17_Chr7g0261701 43.836 292 148 6 343 629 9 289 3.92e-70 229
Msa1464470 MtrunA17_Chr4g0035881 37.566 378 168 8 79 452 4 317 2.22e-69 228
Msa1464470 MtrunA17_Chr3g0143241 40.751 346 174 9 4 341 149 471 1.07e-66 228
Msa1464470 MtrunA17_Chr4g0026651 48.696 230 104 5 2 228 86 304 4.73e-66 219
Msa1464470 MtrunA17_Chr7g0250461 39.809 314 168 9 4 307 153 455 2.80e-63 217
Msa1464470 MtrunA17_Chr7g0250441 42.014 288 151 6 350 629 3 282 8.04e-62 207
Msa1464470 MtrunA17_Chr2g0301911 37.234 376 185 11 15 382 28 360 1.17e-59 204
Msa1464470 MtrunA17_Chr6g0480721 40.462 346 166 12 302 629 276 599 2.79e-59 209
Msa1464470 MtrunA17_Chr6g0480721 39.516 248 130 5 4 249 77 306 5.96e-50 184
Msa1464470 MtrunA17_Chr3g0103071 37.500 280 173 2 137 415 1 279 9.87e-58 196
Msa1464470 MtrunA17_Chr8g0346361 37.500 344 172 11 302 629 180 496 1.49e-55 196
Msa1464470 MtrunA17_Chr8g0346361 40.909 220 103 5 17 235 4 197 3.62e-43 162
Msa1464470 MtrunA17_Chr3g0097061 38.112 286 152 5 3 288 47 307 1.50e-53 189
Msa1464470 MtrunA17_Chr3g0097061 45.833 96 45 1 411 506 330 418 2.26e-19 91.3
Msa1464470 MtrunA17_Chr3g0105451 35.452 299 160 6 345 630 1 279 3.96e-51 178
Msa1464470 MtrunA17_Chr4g0026661 40.613 261 134 5 379 630 12 260 5.21e-51 177
Msa1464470 MtrunA17_Chr2g0312841 40.580 207 98 5 17 223 9 190 2.00e-42 151
Msa1464470 MtrunA17_Chr2g0301031 36.260 262 144 7 379 631 1 248 1.16e-41 151
Msa1464470 MtrunA17_Chr2g0312861 37.023 262 138 9 379 629 1 246 6.49e-40 148
Msa1464470 MtrunA17_Chr3g0105461 43.523 193 83 7 42 228 150 322 8.19e-35 135
Msa1464470 MtrunA17_Chr4g0071191 38.430 242 123 8 324 552 22 250 2.33e-34 131
Msa1464470 MtrunA17_Chr5g0418921 48.889 135 58 4 352 480 5 134 2.08e-30 117
Msa1464470 MtrunA17_Chr3g0103061 49.565 115 51 3 4 118 153 260 4.00e-28 114
Msa1464470 MtrunA17_Chr2g0301921 33.028 218 124 6 421 629 1 205 3.84e-27 109
Msa1464470 MtrunA17_Chr5g0436021 38.889 180 82 5 42 216 31 187 1.19e-26 107
Msa1464470 MtrunA17_Chr2g0301021 30.000 350 139 12 5 345 129 381 3.91e-26 110
Msa1464470 MtrunA17_Chr3g0143231 55.914 93 33 2 363 452 2 89 1.03e-21 89.7
Msa1464470 MtrunA17_Chr3g0142981 35.602 191 78 4 45 233 32 179 1.02e-20 90.9
Msa1464470 MtrunA17_Chr3g0142971 53.488 86 38 1 363 448 2 85 2.25e-19 83.2
Msa1464470 MtrunA17_Chr8g0376851 35.465 172 94 5 469 629 6 171 1.59e-18 83.6
Msa1464470 MtrunA17_Chr5g0398341 43.333 90 51 0 421 510 1 90 3.28e-16 74.7
Msa1464470 MtrunA17_Chr5g0436031 31.609 174 95 5 469 629 18 180 9.45e-16 76.6
Msa1464470 MtrunA17_Chr3g0142961 34.586 133 74 5 462 581 4 136 1.48e-13 68.2
Msa1464470 MtrunA17_Chr7g0248851 32.258 155 84 6 488 630 2 147 3.14e-13 67.8
Msa1464470 MtrunA17_Chr3g0077671 45.070 71 37 2 411 479 236 306 6.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464470 AT5G45650.2 55.538 632 274 5 4 631 162 790 0.0 702
Msa1464470 AT5G45650.1 55.538 632 274 5 4 631 162 790 0.0 702
Msa1464470 AT5G45640.1 48.762 646 289 12 4 631 132 753 0.0 579
Msa1464470 AT5G67360.1 46.490 641 305 15 4 631 141 756 1.78e-177 523
Msa1464470 AT2G04160.1 43.622 635 334 12 4 631 155 772 2.52e-174 515
Msa1464470 AT5G59810.1 43.150 635 333 10 4 632 165 777 1.42e-164 490
Msa1464470 AT4G34980.1 43.411 645 329 17 4 630 133 759 4.29e-162 483
Msa1464470 AT2G05920.1 42.768 643 328 14 4 632 136 752 1.48e-161 481
Msa1464470 AT3G14240.1 43.359 655 324 15 4 632 139 772 2.94e-158 474
Msa1464470 AT5G51750.1 42.593 648 325 14 4 631 156 776 1.97e-156 469
Msa1464470 AT1G04110.1 40.093 646 350 13 4 632 148 773 1.55e-154 464
Msa1464470 AT1G20160.2 40.769 650 332 14 4 632 108 725 1.03e-150 453
Msa1464470 AT1G20160.1 40.769 650 332 14 4 632 147 764 3.48e-150 453
Msa1464470 AT3G14067.1 40.867 646 344 14 4 631 144 769 4.30e-146 442
Msa1464470 AT4G10550.4 40.155 645 346 14 4 632 93 713 2.37e-143 434
Msa1464470 AT4G10550.2 40.155 645 346 14 4 632 93 713 2.37e-143 434
Msa1464470 AT4G10550.1 40.155 645 346 14 4 632 149 769 7.09e-143 434
Msa1464470 AT4G10550.3 40.155 645 346 14 4 632 165 785 1.69e-142 434
Msa1464470 AT1G01900.1 39.752 644 350 13 4 632 154 774 1.23e-140 428
Msa1464470 AT4G10540.1 39.938 646 347 16 4 632 145 766 8.41e-140 426
Msa1464470 AT1G32960.1 40.340 647 343 14 4 632 147 768 3.65e-139 424
Msa1464470 AT1G32940.4 40.310 645 346 15 4 632 93 714 4.54e-138 420
Msa1464470 AT1G32940.2 40.310 645 346 15 4 632 93 714 4.54e-138 420
Msa1464470 AT1G32940.1 40.310 645 346 15 4 632 144 765 2.49e-137 420
Msa1464470 AT5G59120.1 39.470 641 317 16 4 629 143 727 4.79e-136 415
Msa1464470 AT1G32950.2 40.775 645 342 15 4 632 93 713 1.99e-135 413
Msa1464470 AT1G32950.1 40.775 645 342 15 4 632 144 764 3.75e-135 414
Msa1464470 AT1G66210.1 39.286 644 325 15 4 629 155 750 8.15e-135 413
Msa1464470 AT4G10520.1 37.947 643 346 13 4 632 144 747 1.46e-134 412
Msa1464470 AT5G59090.2 39.938 641 309 18 4 629 144 723 3.73e-134 410
Msa1464470 AT5G59090.3 39.938 641 314 18 4 629 142 726 3.89e-134 410
Msa1464470 AT5G59090.1 39.938 641 314 18 4 629 144 728 4.62e-134 410
Msa1464470 AT4G10510.2 38.295 645 357 15 4 632 78 697 9.49e-133 405
Msa1464470 AT4G10510.4 38.295 645 357 15 4 632 93 712 1.41e-132 406
Msa1464470 AT4G10510.1 38.295 645 357 15 4 632 137 756 4.90e-132 405
Msa1464470 AT4G10510.3 38.295 645 357 15 4 632 149 768 4.90e-132 406
Msa1464470 AT1G20150.1 38.285 653 347 16 4 630 149 771 6.69e-130 400
Msa1464470 AT5G11940.1 39.144 654 323 18 4 632 152 755 7.55e-130 400
Msa1464470 AT5G59100.1 38.941 642 326 19 4 629 146 737 1.45e-129 399
Msa1464470 AT4G26330.2 37.984 645 359 16 4 629 99 721 4.05e-128 394
Msa1464470 AT4G26330.1 37.984 645 359 16 4 629 113 735 5.42e-128 395
Msa1464470 AT5G59190.1 38.158 608 312 18 4 597 105 662 3.33e-127 391
Msa1464470 AT5G58830.1 38.462 637 305 20 4 629 145 705 1.19e-126 390
Msa1464470 AT5G59130.3 36.933 639 330 17 4 629 108 686 6.27e-126 388
Msa1464470 AT1G66220.1 38.485 647 323 15 4 629 152 744 1.45e-125 389
Msa1464470 AT3G46850.1 37.850 642 331 19 4 629 145 734 1.61e-125 388
Msa1464470 AT5G59130.4 36.933 639 330 17 4 629 147 725 2.51e-125 387
Msa1464470 AT5G59130.1 36.933 639 330 17 4 629 143 721 3.15e-125 387
Msa1464470 AT4G10530.1 37.152 646 338 14 4 632 144 738 3.48e-125 387
Msa1464470 AT4G00230.1 39.498 638 333 17 4 629 147 743 6.82e-123 382
Msa1464470 AT4G21650.1 37.792 643 337 17 4 629 164 760 3.46e-122 380
Msa1464470 AT3G46840.1 38.185 639 332 21 4 629 146 734 3.60e-122 379
Msa1464470 AT4G21640.1 38.558 638 304 18 4 629 166 727 6.17e-121 376
Msa1464470 AT5G59130.2 36.620 639 322 18 4 629 147 715 7.53e-121 375
Msa1464470 AT5G58840.1 36.421 637 317 16 4 629 147 706 2.00e-118 369
Msa1464470 AT5G58820.1 37.969 640 303 22 4 629 141 700 2.28e-118 368
Msa1464470 AT4G21630.1 38.785 642 327 19 4 629 162 753 4.89e-118 369
Msa1464470 AT1G32970.1 40.855 585 307 13 62 632 166 725 1.59e-115 362
Msa1464470 AT5G03620.1 37.730 652 337 21 4 627 146 756 2.70e-115 362
Msa1464470 AT4G21323.1 36.392 643 346 13 4 629 197 793 6.33e-112 354
Msa1464470 AT4G21326.1 36.434 645 347 17 4 632 93 690 1.46e-110 348
Msa1464470 AT1G32940.3 42.765 463 229 13 4 452 144 584 5.22e-104 328
Msa1464470 AT4G15040.2 35.479 637 343 18 4 629 106 685 1.05e-103 330
Msa1464470 AT4G15040.1 35.479 637 343 18 4 629 106 685 1.05e-103 330
Msa1464470 AT5G67090.1 33.898 649 329 21 4 619 135 716 4.13e-101 324
Msa1464470 AT5G03620.2 41.228 456 235 13 4 452 146 575 7.54e-96 306
Msa1464470 AT4G00230.2 42.478 452 233 10 4 455 147 571 3.38e-95 305
Msa1464470 AT5G58840.3 38.581 451 213 10 4 454 147 533 2.49e-91 293
Msa1464470 AT2G39850.1 33.183 666 367 29 4 629 138 765 2.74e-89 294
Msa1464470 AT2G19170.1 33.542 638 359 21 4 594 162 781 3.59e-86 286
Msa1464470 AT2G19170.2 33.542 638 359 21 4 594 162 781 3.59e-86 286
Msa1464470 AT4G30020.3 32.967 637 365 21 4 594 162 782 1.01e-84 283
Msa1464470 AT4G30020.1 32.967 637 365 21 4 594 162 782 1.01e-84 283
Msa1464470 AT4G30020.4 32.967 637 365 21 4 594 162 782 1.01e-84 283
Msa1464470 AT4G30020.2 32.967 637 365 21 4 594 162 782 1.01e-84 283
Msa1464470 AT1G20160.3 40.314 382 203 7 4 380 147 508 1.93e-81 267
Msa1464470 AT1G30600.1 32.900 693 364 24 4 632 174 829 3.36e-81 273
Msa1464470 AT4G20430.3 31.798 673 365 24 19 632 214 851 5.46e-80 271
Msa1464470 AT4G20430.1 31.798 673 365 24 19 632 214 851 5.46e-80 271
Msa1464470 AT5G44530.1 31.186 683 382 25 4 629 182 833 1.02e-77 264
Msa1464470 AT4G20430.2 31.832 666 350 23 19 632 214 827 2.05e-77 263
Msa1464470 AT1G62340.1 31.003 658 372 22 24 629 202 829 1.28e-73 253
Msa1464470 AT5G44530.2 30.085 708 382 26 4 629 182 858 2.17e-72 250
Msa1464470 AT5G58840.2 35.544 377 180 9 4 380 147 460 1.98e-60 209
Msa1464470 AT5G44530.3 31.579 437 236 17 4 396 182 599 1.13e-42 163
Msa1464470 AT1G32980.1 43.011 186 99 2 417 595 3 188 2.54e-37 137
Msa1464470 AT5G59110.1 35.758 165 88 5 477 629 8 166 5.00e-21 91.3

Find 162 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCACCTTTAGAATATT+AGG 0.115203 tig0044256:-4008 Msa1464470:intergenic
GTTTGTAGTGCTGGAAATTT+TGG 0.190819 tig0044256:+2621 Msa1464470:CDS
CACATTCCTTTCCATTTCTT+TGG 0.191246 tig0044256:-127 Msa1464470:intergenic
TTTCCTGTTTCATCTGTAAT+TGG 0.211362 tig0044256:-5392 Msa1464470:intergenic
TCTCCAATAATTTGTCCTTT+TGG 0.234879 tig0044256:-5969 Msa1464470:intergenic
GTTAAGTACAATATCATTTC+AGG 0.241800 tig0044256:+4630 Msa1464470:CDS
GACTGTCCTCTTTATAGTTT+TGG 0.241953 tig0044256:-5633 Msa1464470:intergenic
TGTCCAAAAGGACAAATTAT+TGG 0.245949 tig0044256:+5966 Msa1464470:three_prime_UTR
GGCATACTAAGAACAAATTC+TGG 0.256701 tig0044256:+3537 Msa1464470:CDS
TGGAAAGGAATGTGCATAAA+TGG 0.258979 tig0044256:+136 Msa1464470:CDS
CATTTATGATGCATCCTATA+TGG 0.259700 tig0044256:+5481 Msa1464470:CDS
TGGCCAACATGCTTTGTATA+TGG 0.269422 tig0044256:-2409 Msa1464470:intergenic
CACATATTGAACACATTATC+TGG 0.275749 tig0044256:-6063 Msa1464470:intergenic
TCAAAGAGCTTTAGTGATAA+AGG 0.286277 tig0044256:+91 Msa1464470:CDS
GTAATGATATTATTTGATAA+TGG 0.294277 tig0044256:+6089 Msa1464470:three_prime_UTR
GTGCCGTTGTTAAGTTTAAT+TGG 0.297573 tig0044256:-2726 Msa1464470:intergenic
TCTTACAATATGATGTTTAT+CGG 0.302741 tig0044256:-5858 Msa1464470:intergenic
AAAAGTTGTGCCATTGGATT+AGG 0.309116 tig0044256:-3906 Msa1464470:intergenic
ATCTTCCCCTTGACCTTGCT+TGG 0.309479 tig0044256:-3690 Msa1464470:intergenic
AAAGCATGTTGGCCAATAAA+AGG 0.324017 tig0044256:+2417 Msa1464470:CDS
CCTTTCCATTTCTTTGGAAC+AGG 0.332790 tig0044256:-121 Msa1464470:intergenic
TCACTAAAGCTCTTTGAATC+TGG 0.336799 tig0044256:-85 Msa1464470:intergenic
TAGTTTCCGTCCATTAGTTT+TGG 0.343767 tig0044256:+3494 Msa1464470:CDS
AGCATTTCCATAGGGCATTA+TGG 0.343906 tig0044256:+2528 Msa1464470:CDS
TTGATTCATCTAAATGCAAT+AGG 0.344424 tig0044256:+167 Msa1464470:CDS
TGGCCTGAACCCATTGAAAA+AGG 0.354312 tig0044256:-5425 Msa1464470:intergenic
GAATCACCTTTAGAATATTA+GGG 0.363424 tig0044256:-4007 Msa1464470:intergenic
AGTTTATGGATTTGTATAGA+TGG 0.369868 tig0044256:-5602 Msa1464470:intergenic
GTATCTAACACAGTTCTTCC+AGG 0.373539 tig0044256:-3930 Msa1464470:intergenic
CAAAGAGCTTTAGTGATAAA+GGG 0.382318 tig0044256:+92 Msa1464470:CDS
TACCAAACCAGCACCCTCTA+TGG 0.385424 tig0044256:+3950 Msa1464470:CDS
GGCCATAGAGGGTGCTGGTT+TGG 0.387224 tig0044256:-3952 Msa1464470:intergenic
CCTTGACCTTGCTTGGATCA+AGG 0.387825 tig0044256:-3683 Msa1464470:intergenic
AAAGTGTTTGTTTGTCCAAA+AGG 0.395896 tig0044256:+5954 Msa1464470:three_prime_UTR
CCTTATTTCATTCCTGCCAC+TGG 0.399089 tig0044256:+3834 Msa1464470:CDS
TAATCCTCCTCTTCGTTTAG+TGG 0.401849 tig0044256:-2249 Msa1464470:intergenic
AATGGTTGAGGTAGTGGGTT+TGG 0.402907 tig0044256:-5566 Msa1464470:intergenic
AGATCAAATGGTTGAGGTAG+TGG 0.411419 tig0044256:-5572 Msa1464470:intergenic
TCAAAGCCGTGCACCCTACT+TGG 0.411561 tig0044256:+4697 Msa1464470:CDS
ATTGTGGTTGTTTGTAGTGC+TGG 0.411647 tig0044256:+2612 Msa1464470:CDS
CCAGTGGCAGGAATGAAATA+AGG 0.412566 tig0044256:-3834 Msa1464470:intergenic
TGGGTCCTGTTCCAAAGAAA+TGG 0.413375 tig0044256:+116 Msa1464470:CDS
AATATTAGGGTCAATTATGT+TGG 0.421798 tig0044256:-3994 Msa1464470:intergenic
ACATCGCTAGCCAAAACTAA+TGG 0.421885 tig0044256:-3504 Msa1464470:intergenic
CTTGGAGTCCTGCTGCTATA+AGG 0.424426 tig0044256:+4715 Msa1464470:CDS
GGTTTGGACAATTATATGTA+AGG 0.424909 tig0044256:-5550 Msa1464470:intergenic
CAAGGTTATGAAAATCATTA+CGG 0.425826 tig0044256:+2225 Msa1464470:CDS
CTTGACCTTGCTTGGATCAA+GGG 0.427073 tig0044256:-3682 Msa1464470:intergenic
TTCTCAGGATCATACTTACT+TGG 0.427553 tig0044256:-5809 Msa1464470:intergenic
TTCGCCAGCGGTACAGCCTC+TGG 0.429791 tig0044256:+2363 Msa1464470:CDS
CCAGGCAAAAGTTGTGCCAT+TGG 0.432433 tig0044256:-3912 Msa1464470:intergenic
GCCACACACCTATGTACATA+TGG 0.433181 tig0044256:-63 Msa1464470:intergenic
ATAAATATTATTAGAAATGA+TGG 0.435416 tig0044256:+6035 Msa1464470:three_prime_UTR
AATCCAATTACAGATGAAAC+AGG 0.440385 tig0044256:+5389 Msa1464470:CDS
CAGGATCAGAATAAATAGAT+AGG 0.442444 tig0044256:+6012 Msa1464470:three_prime_UTR
GAACTTGAAATTTACCTCAA+TGG 0.443862 tig0044256:-2751 Msa1464470:intergenic
GTGGGGTTGGAATTATCCTT+GGG 0.445531 tig0044256:+3775 Msa1464470:CDS
GATGGATAGTTGAGATCAAA+TGG 0.449473 tig0044256:-5584 Msa1464470:intergenic
GTTCAAAGAGCTGGTGGGGT+TGG 0.453012 tig0044256:+3762 Msa1464470:CDS
AGGTCCATCTTTAGCTGTCC+AGG 0.456119 tig0044256:-4577 Msa1464470:intergenic
AAGTTTAATTGGAGCAAGAA+AGG 0.458196 tig0044256:-2715 Msa1464470:intergenic
AATCCTCCTCTTCGTTTAGT+GGG 0.459141 tig0044256:-2248 Msa1464470:intergenic
TATTTGAGAGAGTGAGAGAC+AGG 0.462360 tig0044256:+5993 Msa1464470:three_prime_UTR
AGCTCCTGGAGTAGACATAT+TGG 0.465037 tig0044256:+4551 Msa1464470:CDS
TTTGACAAACTATGTGGAAA+AGG 0.467819 tig0044256:-2645 Msa1464470:intergenic
TTACACATGTTGGACAGAAA+AGG 0.470122 tig0044256:+5747 Msa1464470:CDS
AATAAACTTGTAAACACTCT+TGG 0.478297 tig0044256:-5672 Msa1464470:intergenic
TCCGCCAGAGGCTGTACCGC+TGG 0.479081 tig0044256:-2367 Msa1464470:intergenic
TAAGATTGCAAAGGTAAAGA+AGG 0.481915 tig0044256:-5508 Msa1464470:intergenic
GGTGGGGTTGGAATTATCCT+TGG 0.485770 tig0044256:+3774 Msa1464470:CDS
CAGCCTGACATAACAGCTCC+TGG 0.486189 tig0044256:+4537 Msa1464470:intron
ACTCCAGGAGCTGTTATGTC+AGG 0.486634 tig0044256:-4540 Msa1464470:intergenic
ATATTAGGGTCAATTATGTT+GGG 0.491226 tig0044256:-3993 Msa1464470:intergenic
GTAAAGAAGGTAATCCATAT+AGG 0.493326 tig0044256:-5495 Msa1464470:intergenic
TTGGATCAAGGGTATTGTCT+TGG 0.493705 tig0044256:-3671 Msa1464470:intergenic
GTTCTGAAATTTACACATGT+TGG 0.496821 tig0044256:+5737 Msa1464470:CDS
AGGTCTGCTCTCATGACATC+AGG 0.503155 tig0044256:+4735 Msa1464470:CDS
TATATGGCAAGGCGAGCAAA+GGG 0.503796 tig0044256:-2393 Msa1464470:intergenic
GCTAGAGAACATGGCCATAG+AGG 0.504617 tig0044256:-3964 Msa1464470:intergenic
TTATGGTCCATTGAAATATG+AGG 0.508212 tig0044256:+2545 Msa1464470:CDS
GCATACTAAGAACAAATTCT+GGG 0.510051 tig0044256:+3538 Msa1464470:CDS
GCTAGCGATGTTGAATATGC+AGG 0.512229 tig0044256:+3516 Msa1464470:CDS
TCATAGGTCACTCCAGTGGC+AGG 0.513394 tig0044256:-3846 Msa1464470:intergenic
ACATCATCCTCATATTTCAA+TGG 0.513710 tig0044256:-2552 Msa1464470:intergenic
TGAAGTTCAAAGAGCTGGTG+GGG 0.515585 tig0044256:+3758 Msa1464470:CDS
CCTAAAAGAGCATCTAATCC+AGG 0.519681 tig0044256:+5455 Msa1464470:CDS
CAATGGACCATAATGCCCTA+TGG 0.519734 tig0044256:-2535 Msa1464470:intergenic
GATCAAATGGTTGAGGTAGT+GGG 0.520637 tig0044256:-5571 Msa1464470:intergenic
CACACATCTTCAATAGTGGC+AGG 0.524677 tig0044256:+2306 Msa1464470:CDS
ATTACACCAAAACTATAAAG+AGG 0.526682 tig0044256:+5627 Msa1464470:CDS
GAGTAGACATATTGGCAGCC+TGG 0.529243 tig0044256:+4559 Msa1464470:CDS
AACACACACATCTTCAATAG+TGG 0.533460 tig0044256:+2302 Msa1464470:CDS
AATTGACCCTAATATTCTAA+AGG 0.534047 tig0044256:+4001 Msa1464470:CDS
CCTTGATCCAAGCAAGGTCA+AGG 0.537135 tig0044256:+3683 Msa1464470:CDS
AGAGCAGACCTTATAGCAGC+AGG 0.539158 tig0044256:-4723 Msa1464470:intergenic
ATCAATTACTCCAGTCCACA+TGG 0.542021 tig0044256:+3467 Msa1464470:CDS
GATGCATCATAAATGAGTCC+TGG 0.547628 tig0044256:-5473 Msa1464470:intergenic
TTTGAAGTTCAAAGAGCTGG+TGG 0.547641 tig0044256:+3756 Msa1464470:CDS
TCATTCTTCTCCTAATCCAA+TGG 0.548937 tig0044256:+3896 Msa1464470:CDS
AGGGTGCATTACAAGCTGTA+AGG 0.551328 tig0044256:+2583 Msa1464470:CDS
GCACCAACGGTGATGATCCA+AGG 0.551550 tig0044256:-2675 Msa1464470:intergenic
GTATATGGCAAGGCGAGCAA+AGG 0.554492 tig0044256:-2394 Msa1464470:intergenic
GAGCTTTAGTGATAAAGGGA+TGG 0.559752 tig0044256:+96 Msa1464470:CDS
TGTGTAAATTTCAGAACACT+TGG 0.561941 tig0044256:-5731 Msa1464470:intergenic
TATTGAAAAGACACAGCCAC+TGG 0.562911 tig0044256:-5884 Msa1464470:intergenic
TAGCAGCAGGACTCCAAGTA+GGG 0.564403 tig0044256:-4710 Msa1464470:intergenic
GGGACCTCTGCTAGAGAACA+TGG 0.567263 tig0044256:-3973 Msa1464470:intergenic
TAGTTGAGATCAAATGGTTG+AGG 0.567465 tig0044256:-5578 Msa1464470:intergenic
CTTGATCCAAGCAAGGTCAA+GGG 0.570101 tig0044256:+3684 Msa1464470:CDS
GTTTATTGCTAAGTCATCAA+AGG 0.571060 tig0044256:+5688 Msa1464470:CDS
GGAATGAAATAAGGATCAGA+AGG 0.572198 tig0044256:-3825 Msa1464470:intergenic
CTAGAGAACATGGCCATAGA+GGG 0.573250 tig0044256:-3963 Msa1464470:intergenic
ATAGATGATGCTATTGAAGA+TGG 0.575968 tig0044256:+2492 Msa1464470:CDS
AGCTTTAGTGATAAAGGGAT+GGG 0.576857 tig0044256:+97 Msa1464470:CDS
GTAGAAAGATAGTTGGAGCA+AGG 0.582949 tig0044256:+2193 Msa1464470:intron
ATGGCCATGTTCTCTAGCAG+AGG 0.585352 tig0044256:+3969 Msa1464470:CDS
CACCAACGGTGATGATCCAA+GGG 0.586661 tig0044256:-2674 Msa1464470:intergenic
GTGTTAAATTAAGATTGCAA+AGG 0.587310 tig0044256:-5517 Msa1464470:intergenic
ATAGCAGCAGGACTCCAAGT+AGG 0.588433 tig0044256:-4711 Msa1464470:intergenic
TTGAAGTTCAAAGAGCTGGT+GGG 0.589149 tig0044256:+3757 Msa1464470:CDS
GCAGCCTGGACAGCTAAAGA+TGG 0.589528 tig0044256:+4573 Msa1464470:CDS
TGAGGATGATGTGATTGCTA+AGG 0.591048 tig0044256:+2563 Msa1464470:CDS
GCTGCCAATATGTCTACTCC+AGG 0.592322 tig0044256:-4555 Msa1464470:intergenic
GCTCTCGACAAAGACGGCCA+TGG 0.593610 tig0044256:+2279 Msa1464470:CDS
AAGAGGACAGTCACCAATGT+TGG 0.594076 tig0044256:+5644 Msa1464470:CDS
TATGGCAAGGCGAGCAAAGG+GGG 0.594666 tig0044256:-2391 Msa1464470:intergenic
GCACTCGGAGGCTTCGCCAG+CGG 0.598983 tig0044256:+2351 Msa1464470:CDS
CGCTAGCCAAAACTAATGGA+CGG 0.598997 tig0044256:-3500 Msa1464470:intergenic
AACATGGCCATAGAGGGTGC+TGG 0.599716 tig0044256:-3957 Msa1464470:intergenic
TAACAACGGCACAACCATTG+AGG 0.600693 tig0044256:+2737 Msa1464470:CDS
ACTCTTGGTCCTACCAACAT+TGG 0.602497 tig0044256:-5657 Msa1464470:intergenic
CCTGTTCCAAAGAAATGGAA+AGG 0.605695 tig0044256:+121 Msa1464470:CDS
TTGAAGATGTGTGTGTTCCA+TGG 0.610418 tig0044256:-2296 Msa1464470:intergenic
AAATTTCAGAACACTTGGAG+TGG 0.611548 tig0044256:-5726 Msa1464470:intergenic
AACATGCTTTGTATATGGCA+AGG 0.611589 tig0044256:-2404 Msa1464470:intergenic
GGAGCAAGGTACTACTTGCA+AGG 0.614915 tig0044256:+2207 Msa1464470:CDS
TTGCCATATACAAAGCATGT+TGG 0.628748 tig0044256:+2406 Msa1464470:CDS
TTGATCCAAGCAAGGTCAAG+GGG 0.630130 tig0044256:+3685 Msa1464470:CDS
ATCGACAGTACTAGCACCAA+CGG 0.638063 tig0044256:-2688 Msa1464470:intergenic
ATATTATTAGAAATGATGGT+AGG 0.638259 tig0044256:+6039 Msa1464470:three_prime_UTR
CTGATGCAGCAGAAACATGA+GGG 0.640317 tig0044256:-4668 Msa1464470:intergenic
TCACGAAAATTCATACGTGT+AGG 0.640582 tig0044256:-4597 Msa1464470:intergenic
AAATCAGCTCTCGACAAAGA+CGG 0.640936 tig0044256:+2273 Msa1464470:CDS
AGGACTCCAAGTAGGGTGCA+CGG 0.642015 tig0044256:-4703 Msa1464470:intergenic
GGAGGATTTGACAAACTATG+TGG 0.642735 tig0044256:-2651 Msa1464470:intergenic
CGGCCCACTAAACGAAGAGG+AGG 0.642872 tig0044256:+2245 Msa1464470:CDS
GGACAGTCACCAATGTTGGT+AGG 0.645534 tig0044256:+5648 Msa1464470:CDS
GCCAGCGGTACAGCCTCTGG+CGG 0.646345 tig0044256:+2366 Msa1464470:CDS
GCTCCAATTAAACTTAACAA+CGG 0.648341 tig0044256:+2723 Msa1464470:CDS
GAGGATGATGTGATTGCTAA+GGG 0.655639 tig0044256:+2564 Msa1464470:CDS
ACTGATGCAGCAGAAACATG+AGG 0.661423 tig0044256:-4669 Msa1464470:intergenic
ACACATCTTCAATAGTGGCA+GGG 0.664129 tig0044256:+2307 Msa1464470:CDS
CAATACCCTTGATCCAAGCA+AGG 0.665194 tig0044256:+3677 Msa1464470:CDS
TCATATTGTAAGAAGTCCAG+TGG 0.673458 tig0044256:+5868 Msa1464470:CDS
TTACGGCCCACTAAACGAAG+AGG 0.683198 tig0044256:+2242 Msa1464470:CDS
ACCAACGGTGATGATCCAAG+GGG 0.697530 tig0044256:-2673 Msa1464470:intergenic
TCCATATGTACATAGGTGTG+TGG 0.698290 tig0044256:+62 Msa1464470:exon
GCTAAGACAACAGACAACAC+AGG 0.702612 tig0044256:+5365 Msa1464470:intron
ATTGTCATAGGTCACTCCAG+TGG 0.712446 tig0044256:-3850 Msa1464470:intergenic
TTGTGCATGAGAGGACAAGG+TGG 0.716284 tig0044256:+3717 Msa1464470:CDS
ATATGGCAAGGCGAGCAAAG+GGG 0.734093 tig0044256:-2392 Msa1464460:intergenic
CCAACGGTGATGATCCAAGG+GGG 0.790280 tig0044256:-2672 Msa1464460:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - tig0044256:1033-1052 Msa1464470:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + tig0044256:1032-1051 Msa1464470:intron 0.0%
!! TATATATATATATATATATA+GGG + tig0044256:1033-1052 Msa1464470:intron 0.0%
!! ATATATATATATATATATAT+AGG - tig0044256:1032-1051 Msa1464470:intergenic 0.0%
!! ATATATATATATATATGGTT+CGG - tig0044256:1028-1047 Msa1464470:intergenic 10.0%
!!! TTTTCTCTTTTTATTTTTTT+TGG - tig0044256:1769-1788 Msa1464470:intergenic 10.0%
!! TAAATTTAAAAAAGAAATCA+TGG - tig0044256:3336-3355 Msa1464470:intergenic 10.0%
!! ATAAATATTATTAGAAATGA+TGG + tig0044256:6035-6054 Msa1464470:three_prime_UTR 10.0%
!! AAAGAAACTACTAATTATAT+TGG - tig0044256:430-449 Msa1464470:intergenic 15.0%
!!! TAATTTTATTTGAAGTATAC+CGG - tig0044256:789-808 Msa1464470:intergenic 15.0%
!! AAAAGAAAGAAACTAAATTA+AGG - tig0044256:1571-1590 Msa1464470:intergenic 15.0%
!!! TGGTTTTTTAAATGTTTATA+TGG - tig0044256:1995-2014 Msa1464470:intergenic 15.0%
!!! TCTTTTTTAAATTTACATTG+AGG + tig0044256:3341-3360 Msa1464470:intron 15.0%
!!! AATATATTGAACAAGTTTTA+AGG - tig0044256:3877-3896 Msa1464470:intergenic 15.0%
!! AACAATTAATATTGTGATAA+AGG - tig0044256:4032-4051 Msa1464470:intergenic 15.0%
!!! TATACTGAAGTTTTAAATTT+TGG - tig0044256:5060-5079 Msa1464470:intergenic 15.0%
!! TTATTGATCTATGTAATAAT+TGG + tig0044256:5175-5194 Msa1464470:intron 15.0%
!! GTAATGATATTATTTGATAA+TGG + tig0044256:6089-6108 Msa1464470:three_prime_UTR 15.0%
!! TTTCAAAAAAGAAACTGAAA+TGG - tig0044256:352-371 Msa1464470:intergenic 20.0%
!!! AAAGTTATTTCAATGAACTT+TGG + tig0044256:374-393 Msa1464470:intron 20.0%
!!! TATTTACGTCTGTTATTTTA+GGG - tig0044256:905-924 Msa1464470:intergenic 20.0%
!!! ATATTTACGTCTGTTATTTT+AGG - tig0044256:906-925 Msa1464470:intergenic 20.0%
!!! AGAGAAATGAGATTTTTTTT+GGG - tig0044256:962-981 Msa1464470:intergenic 20.0%
!!! TAGAGAAATGAGATTTTTTT+TGG - tig0044256:963-982 Msa1464470:intergenic 20.0%
!! ATAAACATTTAAAAAACCAC+CGG + tig0044256:1996-2015 Msa1464470:intron 20.0%
!! AGTGCTAATAAATAGTTAAT+TGG + tig0044256:2095-2114 Msa1464470:intron 20.0%
!! TTAAATATGATGTATGAAGT+TGG - tig0044256:2144-2163 Msa1464470:intergenic 20.0%
!!! TTTTTTGGTTTTCCTTTTAT+TGG - tig0044256:2432-2451 Msa1464470:intergenic 20.0%
!! CACTAGGAAAAAAATAAAAT+AGG + tig0044256:2773-2792 Msa1464470:intron 20.0%
!! AATCTTTCTTAATTAATTCC+AGG + tig0044256:3440-3459 Msa1464470:intron 20.0%
!! ATCTTTCTTAATTAATTCCA+GGG + tig0044256:3441-3460 Msa1464470:intron 20.0%
!! CAATAATCTAAATTTAAGAG+AGG - tig0044256:3587-3606 Msa1464470:intergenic 20.0%
!! CTCTCTTAAATTTAGATTAT+TGG + tig0044256:3585-3604 Msa1464470:intron 20.0%
!!! CATTTTATGTACATTATTAC+AGG - tig0044256:4202-4221 Msa1464470:intergenic 20.0%
!!! TTTAAAACTAATGTAGACAA+TGG - tig0044256:4964-4983 Msa1464470:intergenic 20.0%
!! TAAAATCTTTATATTGTTGC+GGG - tig0044256:5008-5027 Msa1464470:intergenic 20.0%
!! CTAAAATCTTTATATTGTTG+CGG - tig0044256:5009-5028 Msa1464470:intergenic 20.0%
!!! TGAAGTTTTAAATTTTGGTT+GGG - tig0044256:5055-5074 Msa1464470:intergenic 20.0%
!!! ATTTAAAACTTCAGTATAGA+AGG + tig0044256:5062-5081 Msa1464470:intron 20.0%
!! GTAGTATATTTATATCATCA+CGG - tig0044256:5265-5284 Msa1464470:intergenic 20.0%
!! GATTTAGATATATCAATGAA+GGG - tig0044256:5328-5347 Msa1464470:intergenic 20.0%
!! TGATTTAGATATATCAATGA+AGG - tig0044256:5329-5348 Msa1464470:intergenic 20.0%
!! TCTTACAATATGATGTTTAT+CGG - tig0044256:5861-5880 Msa1464470:intergenic 20.0%
!! ATATTATTAGAAATGATGGT+AGG + tig0044256:6039-6058 Msa1464470:three_prime_UTR 20.0%
! TTGATTCATCTAAATGCAAT+AGG + tig0044256:167-186 Msa1464470:CDS 25.0%
! GACAATATAATATGATAGCT+AGG - tig0044256:241-260 Msa1464470:intergenic 25.0%
! TTTACTCCAACTACTAAATA+AGG + tig0044256:292-311 Msa1464470:intron 25.0%
!! AACTAACCTTATTTAGTAGT+TGG - tig0044256:301-320 Msa1464470:intergenic 25.0%
! TAAGAAAAGAACCTATTCAA+AGG - tig0044256:402-421 Msa1464470:intergenic 25.0%
!!! AAGCTTGGTCATATTTTTAT+AGG + tig0044256:551-570 Msa1464470:intron 25.0%
!!! AGCTTGGTCATATTTTTATA+GGG + tig0044256:552-571 Msa1464470:intron 25.0%
! AAAAAGTTCATGTATTAACG+AGG + tig0044256:609-628 Msa1464470:intron 25.0%
! TCTTTATCAGCGTATTTAAA+AGG + tig0044256:834-853 Msa1464470:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG + tig0044256:1201-1220 Msa1464470:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG - tig0044256:1207-1226 Msa1464470:intergenic 25.0%
! GCAAAGTTATAACTAAAAAG+TGG + tig0044256:1233-1252 Msa1464470:intron 25.0%
! CCATTAAAAAGAAAAGAGTA+TGG - tig0044256:1634-1653 Msa1464470:intergenic 25.0%
!! CCATACTCTTTTCTTTTTAA+TGG + tig0044256:1631-1650 Msa1464470:intron 25.0%
! ATAGACAATGAAATAGAGTA+TGG - tig0044256:1666-1685 Msa1464470:intergenic 25.0%
! TAAACATTTAAAAAACCACC+GGG + tig0044256:1997-2016 Msa1464470:intron 25.0%
! TGAACTCATTGTAATACTAA+AGG + tig0044256:2036-2055 Msa1464470:intron 25.0%
!! TCTTTTTGTAGAAAGATAGT+TGG + tig0044256:2186-2205 Msa1464470:intron 25.0%
! CAAGGTTATGAAAATCATTA+CGG + tig0044256:2225-2244 Msa1464470:CDS 25.0%
! AAAGGAAAACCAAAAAATGA+AGG + tig0044256:2435-2454 Msa1464470:CDS 25.0%
!!! CAAAAGTTTCCTTCATTTTT+TGG - tig0044256:2447-2466 Msa1464470:intergenic 25.0%
!!! ATGTTTTAAGCATTTCCATA+GGG + tig0044256:2520-2539 Msa1464470:CDS 25.0%
! AATAGGATAGATGTTCATAA+AGG + tig0044256:2790-2809 Msa1464470:intron 25.0%
! CTGTAATTCAAATACTAGTT+AGG - tig0044256:3021-3040 Msa1464470:intergenic 25.0%
! GTGAGAGATGATTAATATTA+AGG - tig0044256:3109-3128 Msa1464470:intergenic 25.0%
! ATCTTTGGTCAAAATTTCAA+GGG - tig0044256:3134-3153 Msa1464470:intergenic 25.0%
! AATCTTTGGTCAAAATTTCA+AGG - tig0044256:3135-3154 Msa1464470:intergenic 25.0%
!! ATCTCTGGTCAAAATTTTAA+GGG - tig0044256:3165-3184 Msa1464470:intergenic 25.0%
!! AATCTCTGGTCAAAATTTTA+AGG - tig0044256:3166-3185 Msa1464470:intergenic 25.0%
! ACAATTAGTAGTGAATTTCT+AGG + tig0044256:3222-3241 Msa1464470:intron 25.0%
! CAATTAGTAGTGAATTTCTA+GGG + tig0044256:3223-3242 Msa1464470:intron 25.0%
! TTAAATTTACATTGAGGAGA+CGG + tig0044256:3347-3366 Msa1464470:intron 25.0%
! AAGATTAGTAGTTAGTGATT+TGG - tig0044256:3426-3445 Msa1464470:intergenic 25.0%
!!! AAGTTTTAAGGTATTGTCAT+AGG - tig0044256:3865-3884 Msa1464470:intergenic 25.0%
! ATATTAGGGTCAATTATGTT+GGG - tig0044256:3996-4015 Msa1464470:intergenic 25.0%
! AATATTAGGGTCAATTATGT+TGG - tig0044256:3997-4016 Msa1464470:intergenic 25.0%
! AATTGACCCTAATATTCTAA+AGG + tig0044256:4001-4020 Msa1464470:CDS 25.0%
!!! GAATCACCTTTAGAATATTA+GGG - tig0044256:4010-4029 Msa1464470:intergenic 25.0%
!!! ACTTTTTAGAGAAGATAGAT+AGG + tig0044256:4254-4273 Msa1464470:intron 25.0%
! AAAATACCGAACTTGAAATT+TGG + tig0044256:4388-4407 Msa1464470:intron 25.0%
! GTTAAGTACAATATCATTTC+AGG + tig0044256:4630-4649 Msa1464470:CDS 25.0%
!!! CTGAAGTTTTAAATTTTGGT+TGG - tig0044256:5056-5075 Msa1464470:intergenic 25.0%
!!! TAGAATGTTGTTGATTTGAT+TGG - tig0044256:5123-5142 Msa1464470:intergenic 25.0%
! ATATTTATATCATCACGGTA+AGG - tig0044256:5260-5279 Msa1464470:intergenic 25.0%
! GTGTTAAATTAAGATTGCAA+AGG - tig0044256:5520-5539 Msa1464470:intergenic 25.0%
! AGTTTATGGATTTGTATAGA+TGG - tig0044256:5605-5624 Msa1464470:intergenic 25.0%
!!! TTTTGGTGTAATTGAGTTTA+TGG - tig0044256:5619-5638 Msa1464470:intergenic 25.0%
! ATTACACCAAAACTATAAAG+AGG + tig0044256:5627-5646 Msa1464470:CDS 25.0%
! AATAAACTTGTAAACACTCT+TGG - tig0044256:5675-5694 Msa1464470:intergenic 25.0%
!! GTTTTGTTCCATATGTACAT+AGG + tig0044256:55-74 Msa1464470:exon 30.0%
! TCAAAGAGCTTTAGTGATAA+AGG + tig0044256:91-110 Msa1464470:CDS 30.0%
! CAAAGAGCTTTAGTGATAAA+GGG + tig0044256:92-111 Msa1464470:CDS 30.0%
! GAAAAGTGTAGAAGTTCAAA+TGG - tig0044256:217-236 Msa1464470:intergenic 30.0%
AAAAATATGACCAAGCTTCT+TGG - tig0044256:549-568 Msa1464470:intergenic 30.0%
!! ACATACAGAACATTGATTTG+AGG - tig0044256:687-706 Msa1464470:intergenic 30.0%
! CTAAAGCGAATTTTAGATTG+AGG - tig0044256:860-879 Msa1464470:intergenic 30.0%
! CTCAATCTAAAATTCGCTTT+AGG + tig0044256:858-877 Msa1464470:intron 30.0%
TTTAGGTCTACAAATGCATT+AGG + tig0044256:875-894 Msa1464470:intron 30.0%
AGAAATGAGGATTAATGAGA+TGG - tig0044256:934-953 Msa1464470:intergenic 30.0%
!!! TTTTTGGGTACAAAGAAATG+AGG - tig0044256:947-966 Msa1464470:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG - tig0044256:1152-1171 Msa1464470:intergenic 30.0%
TATTGTCCTTTAGACTTGAT+TGG + tig0044256:1489-1508 Msa1464470:intron 30.0%
!!! AGTAGACATAGTTTTGTGTA+GGG - tig0044256:1548-1567 Msa1464470:intergenic 30.0%
ACTATTGTCCAATTATCGAA+GGG + tig0044256:1718-1737 Msa1464470:intron 30.0%
! AAATGTTGTCCTCTTTTACT+GGG - tig0044256:1792-1811 Msa1464470:intergenic 30.0%
! AAAATGTTGTCCTCTTTTAC+TGG - tig0044256:1793-1812 Msa1464470:intergenic 30.0%
AATAAGGCAATAACATGATG+AGG - tig0044256:1858-1877 Msa1464470:intergenic 30.0%
TCATCATGTTATTGCCTTAT+TGG + tig0044256:1857-1876 Msa1464470:intron 30.0%
TTGAGTGCATATTTGAATGA+AGG + tig0044256:1924-1943 Msa1464470:intron 30.0%
CACCAAATTCAAAATAAACC+CGG - tig0044256:2018-2037 Msa1464470:intergenic 30.0%
ACTCATTGTAATACTAAAGG+AGG + tig0044256:2039-2058 Msa1464470:intron 30.0%
ATAGATGATGCTATTGAAGA+TGG + tig0044256:2492-2511 Msa1464470:CDS 30.0%
!! GATGTTTTAAGCATTTCCAT+AGG + tig0044256:2519-2538 Msa1464470:CDS 30.0%
TTATGGTCCATTGAAATATG+AGG + tig0044256:2545-2564 Msa1464470:CDS 30.0%
ACATCATCCTCATATTTCAA+TGG - tig0044256:2555-2574 Msa1464470:intergenic 30.0%
TTTGACAAACTATGTGGAAA+AGG - tig0044256:2648-2667 Msa1464470:intergenic 30.0%
AAGTTTAATTGGAGCAAGAA+AGG - tig0044256:2718-2737 Msa1464470:intergenic 30.0%
GCTCCAATTAAACTTAACAA+CGG + tig0044256:2723-2742 Msa1464470:CDS 30.0%
GAACTTGAAATTTACCTCAA+TGG - tig0044256:2754-2773 Msa1464470:intergenic 30.0%
!! AGGTAAATTTCAAGTTCACT+AGG + tig0044256:2757-2776 Msa1464470:intron 30.0%
! TTGTCGCTTAAATATAAGAC+CGG - tig0044256:2824-2843 Msa1464470:intergenic 30.0%
ATCAATCACACAACTAAGAA+AGG + tig0044256:2887-2906 Msa1464470:intron 30.0%
!!! AACGATGTTACTTTTCTACA+AGG - tig0044256:3196-3215 Msa1464470:intergenic 30.0%
GCATACTAAGAACAAATTCT+GGG + tig0044256:3538-3557 Msa1464470:CDS 30.0%
! AAGATAATTTTGTGCATGAG+AGG + tig0044256:3708-3727 Msa1464470:CDS 30.0%
!!! CATAAGTTTTATTGTTCCCA+AGG - tig0044256:3794-3813 Msa1464470:intergenic 30.0%
!! GGAATCACCTTTAGAATATT+AGG - tig0044256:4011-4030 Msa1464470:intergenic 30.0%
ATGTTCATCAAACAATACAC+AGG + tig0044256:4126-4145 Msa1464470:intron 30.0%
!! GTAGATCCAAATTTCAAGTT+CGG - tig0044256:4397-4416 Msa1464470:intergenic 30.0%
! ATCTACTAATCATGATGATG+TGG + tig0044256:4411-4430 Msa1464470:intron 30.0%
! ATTCTGCACATTCTGAAAAT+TGG + tig0044256:4807-4826 Msa1464470:intron 30.0%
! TTCTGCACATTCTGAAAATT+GGG + tig0044256:4808-4827 Msa1464470:intron 30.0%
! ACTAATGTAGACAATGGATT+TGG - tig0044256:4958-4977 Msa1464470:intergenic 30.0%
!!! AAATTTTGGTTGGGTACAAA+TGG - tig0044256:5046-5065 Msa1464470:intergenic 30.0%
AATCCAATTACAGATGAAAC+AGG + tig0044256:5389-5408 Msa1464470:CDS 30.0%
TTTCCTGTTTCATCTGTAAT+TGG - tig0044256:5395-5414 Msa1464470:intergenic 30.0%
CATTTATGATGCATCCTATA+TGG + tig0044256:5481-5500 Msa1464470:CDS 30.0%
GTAAAGAAGGTAATCCATAT+AGG - tig0044256:5498-5517 Msa1464470:intergenic 30.0%
TAAGATTGCAAAGGTAAAGA+AGG - tig0044256:5511-5530 Msa1464470:intergenic 30.0%
GGTTTGGACAATTATATGTA+AGG - tig0044256:5553-5572 Msa1464470:intergenic 30.0%
GTTTATTGCTAAGTCATCAA+AGG + tig0044256:5688-5707 Msa1464470:CDS 30.0%
TGTGTAAATTTCAGAACACT+TGG - tig0044256:5734-5753 Msa1464470:intergenic 30.0%
!! GTTCTGAAATTTACACATGT+TGG + tig0044256:5737-5756 Msa1464470:CDS 30.0%
!!! ACTTTTTTGGTTGGTATACT+TGG + tig0044256:5834-5853 Msa1464470:CDS 30.0%
! AAAGTGTTTGTTTGTCCAAA+AGG + tig0044256:5954-5973 Msa1464470:three_prime_UTR 30.0%
TGTCCAAAAGGACAAATTAT+TGG + tig0044256:5966-5985 Msa1464470:three_prime_UTR 30.0%
!! TCTCCAATAATTTGTCCTTT+TGG - tig0044256:5972-5991 Msa1464470:intergenic 30.0%
CAGGATCAGAATAAATAGAT+AGG + tig0044256:6012-6031 Msa1464470:three_prime_UTR 30.0%
CACATATTGAACACATTATC+TGG - tig0044256:6066-6085 Msa1464470:intergenic 30.0%
TCACTAAAGCTCTTTGAATC+TGG - tig0044256:88-107 Msa1464470:intergenic 35.0%
! AGCTTTAGTGATAAAGGGAT+GGG + tig0044256:97-116 Msa1464470:CDS 35.0%
CACATTCCTTTCCATTTCTT+TGG - tig0044256:130-149 Msa1464470:intergenic 35.0%
TGGAAAGGAATGTGCATAAA+TGG + tig0044256:136-155 Msa1464470:CDS 35.0%
!! GAACTTTGGAACCTTTGAAT+AGG + tig0044256:388-407 Msa1464470:intron 35.0%
TTATGAGCGTGTCATATTCA+CGG + tig0044256:489-508 Msa1464470:intron 35.0%
TGAAAATATGCCAAGAAGCT+TGG + tig0044256:536-555 Msa1464470:intron 35.0%
CGATACTTGTATTTAGTGTC+CGG + tig0044256:767-786 Msa1464470:intron 35.0%
! CTAGAAGACACCTTTTATGA+AGG + tig0044256:1139-1158 Msa1464470:intron 35.0%
TTGCTATAAGTCACTCATGA+AGG - tig0044256:1294-1313 Msa1464470:intergenic 35.0%
CCAAAACCAATCAAGTCTAA+AGG - tig0044256:1498-1517 Msa1464470:intergenic 35.0%
!!! CCTTTAGACTTGATTGGTTT+TGG + tig0044256:1495-1514 Msa1464470:intron 35.0%
!!! GTAGACATAGTTTTGTGTAG+GGG - tig0044256:1547-1566 Msa1464470:intergenic 35.0%
!!! GAGTAGACATAGTTTTGTGT+AGG - tig0044256:1549-1568 Msa1464470:intergenic 35.0%
! GAAATAGAGTATGGAGTATC+TGG - tig0044256:1657-1676 Msa1464470:intergenic 35.0%
CACTATTGTCCAATTATCGA+AGG + tig0044256:1717-1736 Msa1464470:intron 35.0%
AAGAGAAAACCCAGTAAAAG+AGG + tig0044256:1780-1799 Msa1464470:intron 35.0%
CAAATTCAAAATAAACCCGG+TGG - tig0044256:2015-2034 Msa1464470:intergenic 35.0%
!!! CACCGGGTTTATTTTGAATT+TGG + tig0044256:2013-2032 Msa1464470:intron 35.0%
ATGATGTATGAAGTTGGAGA+AGG - tig0044256:2138-2157 Msa1464470:intergenic 35.0%
AACACACACATCTTCAATAG+TGG + tig0044256:2302-2321 Msa1464470:CDS 35.0%
ATTAAAAATGCTGCAGCACT+CGG + tig0044256:2336-2355 Msa1464470:CDS 35.0%
AACATGCTTTGTATATGGCA+AGG - tig0044256:2407-2426 Msa1464470:intergenic 35.0%
TTGCCATATACAAAGCATGT+TGG + tig0044256:2406-2425 Msa1464470:CDS 35.0%
AAAGCATGTTGGCCAATAAA+AGG + tig0044256:2417-2436 Msa1464470:CDS 35.0%
AGCTGTAAGGAAAAACATTG+TGG + tig0044256:2596-2615 Msa1464470:CDS 35.0%
!! GTTTGTAGTGCTGGAAATTT+TGG + tig0044256:2621-2640 Msa1464470:CDS 35.0%
! GTGCCGTTGTTAAGTTTAAT+TGG - tig0044256:2729-2748 Msa1464470:intergenic 35.0%
ACTAAGAAAGGAACTAAGAG+AGG + tig0044256:2899-2918 Msa1464470:intron 35.0%
TTAAGGGTCGTGATAATCTT+TGG - tig0044256:3149-3168 Msa1464470:intergenic 35.0%
TACAAGGCATGAATAATCTC+TGG - tig0044256:3180-3199 Msa1464470:intergenic 35.0%
! TAGTAGTGAATTTCTAGGGA+TGG + tig0044256:3227-3246 Msa1464470:intron 35.0%
! GGTATTTTATGTCAAATCCC+TGG - tig0044256:3396-3415 Msa1464470:intergenic 35.0%
! AGTTAGTGATTTGGCTGTAA+AGG - tig0044256:3417-3436 Msa1464470:intergenic 35.0%
! AAACTATTTTCCATGTGGAC+TGG - tig0044256:3480-3499 Msa1464470:intergenic 35.0%
!! TAGTTTCCGTCCATTAGTTT+TGG + tig0044256:3494-3513 Msa1464470:CDS 35.0%
GGCATACTAAGAACAAATTC+TGG + tig0044256:3537-3556 Msa1464470:CDS 35.0%
! TTCTGGGTATTTTCTATGTC+TGG + tig0044256:3554-3573 Msa1464470:intron 35.0%
!!! AGTTTTGAAGTTCAAAGAGC+TGG + tig0044256:3753-3772 Msa1464470:CDS 35.0%
GGAATGAAATAAGGATCAGA+AGG - tig0044256:3828-3847 Msa1464470:intergenic 35.0%
TCATTCTTCTCCTAATCCAA+TGG + tig0044256:3896-3915 Msa1464470:CDS 35.0%
! AAAAGTTGTGCCATTGGATT+AGG - tig0044256:3909-3928 Msa1464470:intergenic 35.0%
TCACGAAAATTCATACGTGT+AGG - tig0044256:4600-4619 Msa1464470:intergenic 35.0%
CATCAGGTAATTTCTACATC+AGG + tig0044256:4751-4770 Msa1464470:intron 35.0%
ACAACAATCAATCCATATCC+AGG - tig0044256:4782-4801 Msa1464470:intergenic 35.0%
! TTCTGAAAATTGGGAGTCAA+TGG + tig0044256:4817-4836 Msa1464470:intron 35.0%
!! CTGGATTAGATGCTCTTTTA+GGG - tig0044256:5457-5476 Msa1464470:intergenic 35.0%
TAGTTGAGATCAAATGGTTG+AGG - tig0044256:5581-5600 Msa1464470:intergenic 35.0%
GATGGATAGTTGAGATCAAA+TGG - tig0044256:5587-5606 Msa1464470:intergenic 35.0%
! GACTGTCCTCTTTATAGTTT+TGG - tig0044256:5636-5655 Msa1464470:intergenic 35.0%
AAATTTCAGAACACTTGGAG+TGG - tig0044256:5729-5748 Msa1464470:intergenic 35.0%
TTACACATGTTGGACAGAAA+AGG + tig0044256:5747-5766 Msa1464470:CDS 35.0%
TTCTCAGGATCATACTTACT+TGG - tig0044256:5812-5831 Msa1464470:intergenic 35.0%
!!! GATCCTGAGAAGTACTTTTT+TGG + tig0044256:5821-5840 Msa1464470:CDS 35.0%
!! CAACCAAAAAAGTACTTCTC+AGG - tig0044256:5827-5846 Msa1464470:intergenic 35.0%
!!! CTGAGAAGTACTTTTTTGGT+TGG + tig0044256:5825-5844 Msa1464470:CDS 35.0%
TCATATTGTAAGAAGTCCAG+TGG + tig0044256:5868-5887 Msa1464470:CDS 35.0%
TCCATATGTACATAGGTGTG+TGG + tig0044256:62-81 Msa1464470:exon 40.0%
! GAGCTTTAGTGATAAAGGGA+TGG + tig0044256:96-115 Msa1464470:CDS 40.0%
!! CCTTTCCATTTCTTTGGAAC+AGG - tig0044256:124-143 Msa1464470:intergenic 40.0%
CCTGTTCCAAAGAAATGGAA+AGG + tig0044256:121-140 Msa1464470:CDS 40.0%
CACAACACACTTGATTTCCA+CGG + tig0044256:660-679 Msa1464470:intron 40.0%
ACAACACACTTGATTTCCAC+GGG + tig0044256:661-680 Msa1464470:intron 40.0%
ACCTATGAGTCATAATGACC+AGG + tig0044256:742-761 Msa1464470:intron 40.0%
TCCTGGTCATTATGACTCAT+AGG - tig0044256:746-765 Msa1464470:intergenic 40.0%
! CTAAATACAAGTATCGCTCC+TGG - tig0044256:763-782 Msa1464470:intergenic 40.0%
!!! TACGTCTGTTATTTTAGGGC+CGG - tig0044256:901-920 Msa1464470:intergenic 40.0%
CATAATGATCAGCCCAAAGA+AGG + tig0044256:996-1015 Msa1464470:intron 40.0%
GTTCGGAAAATGCCTTCTTT+GGG - tig0044256:1011-1030 Msa1464470:intergenic 40.0%
AAAGTGGAAATCACACCTTG+AGG + tig0044256:1249-1268 Msa1464470:intron 40.0%
! TTTTAGCAATCCACACCTCA+AGG - tig0044256:1267-1286 Msa1464470:intergenic 40.0%
ATCACAAAAGCTGAGCGAAA+AGG - tig0044256:1608-1627 Msa1464470:intergenic 40.0%
CAGTATAGCCCTTCGATAAT+TGG - tig0044256:1729-1748 Msa1464470:intergenic 40.0%
GACACATCACACAACCAATA+AGG - tig0044256:1874-1893 Msa1464470:intergenic 40.0%
GTAGAAAGATAGTTGGAGCA+AGG + tig0044256:2193-2212 Msa1464470:intron 40.0%
AATCCTCCTCTTCGTTTAGT+GGG - tig0044256:2251-2270 Msa1464470:intergenic 40.0%
TAATCCTCCTCTTCGTTTAG+TGG - tig0044256:2252-2271 Msa1464470:intergenic 40.0%
AAATCAGCTCTCGACAAAGA+CGG + tig0044256:2273-2292 Msa1464470:CDS 40.0%
TTGAAGATGTGTGTGTTCCA+TGG - tig0044256:2299-2318 Msa1464470:intergenic 40.0%
ACACATCTTCAATAGTGGCA+GGG + tig0044256:2307-2326 Msa1464470:CDS 40.0%
!! GAGTGCTGCAGCATTTTTAA+TGG - tig0044256:2337-2356 Msa1464470:intergenic 40.0%
TGGCCAACATGCTTTGTATA+TGG - tig0044256:2412-2431 Msa1464470:intergenic 40.0%
! AGCATTTCCATAGGGCATTA+TGG + tig0044256:2528-2547 Msa1464470:CDS 40.0%
TGAGGATGATGTGATTGCTA+AGG + tig0044256:2563-2582 Msa1464470:CDS 40.0%
GAGGATGATGTGATTGCTAA+GGG + tig0044256:2564-2583 Msa1464470:CDS 40.0%
ATTGTGGTTGTTTGTAGTGC+TGG + tig0044256:2612-2631 Msa1464470:CDS 40.0%
GGAGGATTTGACAAACTATG+TGG - tig0044256:2654-2673 Msa1464470:intergenic 40.0%
!! GTTCATAAAGGTACTCCTTC+CGG + tig0044256:2802-2821 Msa1464470:intron 40.0%
CGCTTAAATATAAGACCGGA+AGG - tig0044256:2820-2839 Msa1464470:intergenic 40.0%
ATTAAGCTCCAGCACTTTCA+AGG - tig0044256:2864-2883 Msa1464470:intergenic 40.0%
AGAGAGGAAAAGAGAAAGAG+AGG + tig0044256:2915-2934 Msa1464470:intron 40.0%
GAGAGGAAAAGAGAAAGAGA+GGG + tig0044256:2916-2935 Msa1464470:intron 40.0%
GTTAGGTAGGTAAGCAACTA+AGG - tig0044256:2954-2973 Msa1464470:intergenic 40.0%
! ACTAACTAGCCAGGTTAGTT+AGG - tig0044256:2971-2990 Msa1464470:intergenic 40.0%
GAACAAGTAACTAACTAGCC+AGG - tig0044256:2980-2999 Msa1464470:intergenic 40.0%
! GTTAGGTTAGTCACGTTACT+TGG - tig0044256:3004-3023 Msa1464470:intergenic 40.0%
ATCAATTACTCCAGTCCACA+TGG + tig0044256:3467-3486 Msa1464470:CDS 40.0%
! GACGGAAACTATTTTCCATG+TGG - tig0044256:3485-3504 Msa1464470:intergenic 40.0%
ACATCGCTAGCCAAAACTAA+TGG - tig0044256:3507-3526 Msa1464470:intergenic 40.0%
!! TTGGATCAAGGGTATTGTCT+TGG - tig0044256:3674-3693 Msa1464470:intergenic 40.0%
! ATTTTGTGCATGAGAGGACA+AGG + tig0044256:3714-3733 Msa1464470:CDS 40.0%
! TTTGAAGTTCAAAGAGCTGG+TGG + tig0044256:3756-3775 Msa1464470:CDS 40.0%
TTGAAGTTCAAAGAGCTGGT+GGG + tig0044256:3757-3776 Msa1464470:CDS 40.0%
GTATCTAACACAGTTCTTCC+AGG - tig0044256:3933-3952 Msa1464470:intergenic 40.0%
ACAATCAATCCATATCCAGG+TGG - tig0044256:4779-4798 Msa1464470:intergenic 40.0%
ATGTGTGAGATTGTTGCATG+TGG + tig0044256:4920-4939 Msa1464470:intron 40.0%
!!! TCCTGCAACACCTTTTTCAA+TGG + tig0044256:5415-5434 Msa1464470:CDS 40.0%
!!! CCTGCAACACCTTTTTCAAT+GGG + tig0044256:5416-5435 Msa1464470:CDS 40.0%
!!! ACACCTTTTTCAATGGGTTC+AGG + tig0044256:5422-5441 Msa1464470:CDS 40.0%
!! CCTGGATTAGATGCTCTTTT+AGG - tig0044256:5458-5477 Msa1464470:intergenic 40.0%
!! CCTAAAAGAGCATCTAATCC+AGG + tig0044256:5455-5474 Msa1464470:CDS 40.0%
GATGCATCATAAATGAGTCC+TGG - tig0044256:5476-5495 Msa1464470:intergenic 40.0%
GATCAAATGGTTGAGGTAGT+GGG - tig0044256:5574-5593 Msa1464470:intergenic 40.0%
AGATCAAATGGTTGAGGTAG+TGG - tig0044256:5575-5594 Msa1464470:intergenic 40.0%
TATTGAAAAGACACAGCCAC+TGG - tig0044256:5887-5906 Msa1464470:intergenic 40.0%
TATTTGAGAGAGTGAGAGAC+AGG + tig0044256:5993-6012 Msa1464470:three_prime_UTR 40.0%
GCCACACACCTATGTACATA+TGG - tig0044256:66-85 Msa1464470:intergenic 45.0%
TGGGTCCTGTTCCAAAGAAA+TGG + tig0044256:116-135 Msa1464470:CDS 45.0%
GGTCTACAAATGCATTAGGC+CGG + tig0044256:879-898 Msa1464470:intron 45.0%
GGTTCGGAAAATGCCTTCTT+TGG - tig0044256:1012-1031 Msa1464470:intergenic 45.0%
CACACATCTTCAATAGTGGC+AGG + tig0044256:2306-2325 Msa1464470:CDS 45.0%
TATATGGCAAGGCGAGCAAA+GGG - tig0044256:2396-2415 Msa1464470:intergenic 45.0%
CAATGGACCATAATGCCCTA+TGG - tig0044256:2538-2557 Msa1464470:intergenic 45.0%
AGGGTGCATTACAAGCTGTA+AGG + tig0044256:2583-2602 Msa1464470:CDS 45.0%
ATCGACAGTACTAGCACCAA+CGG - tig0044256:2691-2710 Msa1464470:intergenic 45.0%
TAACAACGGCACAACCATTG+AGG + tig0044256:2737-2756 Msa1464470:CDS 45.0%
! TATGCACACCTTGAAAGTGC+TGG + tig0044256:2853-2872 Msa1464470:intron 45.0%
GCTTACCTACCTAACTAACC+TGG + tig0044256:2959-2978 Msa1464470:intron 45.0%
! ACTAGCCAGGTTAGTTAGGT+AGG - tig0044256:2967-2986 Msa1464470:intergenic 45.0%
AGACGGAAATGTGATGACCT+AGG + tig0044256:3364-3383 Msa1464470:intron 45.0%
CTGGAGTAATTGATCTACCC+TGG - tig0044256:3461-3480 Msa1464470:intergenic 45.0%
CGCTAGCCAAAACTAATGGA+CGG - tig0044256:3503-3522 Msa1464470:intergenic 45.0%
GCTAGCGATGTTGAATATGC+AGG + tig0044256:3516-3535 Msa1464470:CDS 45.0%
CAATACCCTTGATCCAAGCA+AGG + tig0044256:3677-3696 Msa1464470:CDS 45.0%
CTTGACCTTGCTTGGATCAA+GGG - tig0044256:3685-3704 Msa1464470:intergenic 45.0%
CTTGATCCAAGCAAGGTCAA+GGG + tig0044256:3684-3703 Msa1464470:CDS 45.0%
TTGATCCAAGCAAGGTCAAG+GGG + tig0044256:3685-3704 Msa1464470:CDS 45.0%
TGAAGTTCAAAGAGCTGGTG+GGG + tig0044256:3758-3777 Msa1464470:CDS 45.0%
GTGGGGTTGGAATTATCCTT+GGG + tig0044256:3775-3794 Msa1464470:CDS 45.0%
CCAGTGGCAGGAATGAAATA+AGG - tig0044256:3837-3856 Msa1464470:intergenic 45.0%
! CCTTATTTCATTCCTGCCAC+TGG + tig0044256:3834-3853 Msa1464470:CDS 45.0%
ATTGTCATAGGTCACTCCAG+TGG - tig0044256:3853-3872 Msa1464470:intergenic 45.0%
CTAGAGAACATGGCCATAGA+GGG - tig0044256:3966-3985 Msa1464470:intergenic 45.0%
AATCCCATGCAGTCTCAGAT+TGG + tig0044256:4326-4345 Msa1464470:intron 45.0%
! GAACCAATCTGAGACTGCAT+GGG - tig0044256:4332-4351 Msa1464470:intergenic 45.0%
! AGAACCAATCTGAGACTGCA+TGG - tig0044256:4333-4352 Msa1464470:intergenic 45.0%
AGCTCCTGGAGTAGACATAT+TGG + tig0044256:4551-4570 Msa1464470:CDS 45.0%
CTGATGCAGCAGAAACATGA+GGG - tig0044256:4671-4690 Msa1464470:intergenic 45.0%
ACTGATGCAGCAGAAACATG+AGG - tig0044256:4672-4691 Msa1464470:intergenic 45.0%
TTTCTACATCAGGATCCACC+TGG + tig0044256:4761-4780 Msa1464470:intron 45.0%
GCTAAGACAACAGACAACAC+AGG + tig0044256:5365-5384 Msa1464470:intron 45.0%
!! CCCATTGAAAAAGGTGTTGC+AGG - tig0044256:5419-5438 Msa1464470:intergenic 45.0%
TGGCCTGAACCCATTGAAAA+AGG - tig0044256:5428-5447 Msa1464470:intergenic 45.0%
!!! ATGCTCTTTTAGGGCTGAAG+TGG - tig0044256:5448-5467 Msa1464470:intergenic 45.0%
!! AATGGTTGAGGTAGTGGGTT+TGG - tig0044256:5569-5588 Msa1464470:intergenic 45.0%
AAGAGGACAGTCACCAATGT+TGG + tig0044256:5644-5663 Msa1464470:CDS 45.0%
ACTCTTGGTCCTACCAACAT+TGG - tig0044256:5660-5679 Msa1464470:intergenic 45.0%
!! AATTAAAAAATCTAATTAAA+AGG + tig0044256:3611-3630 Msa1464470:intron 5.0%
!! GAACATTGATTTGAGGCCCG+TGG - tig0044256:680-699 Msa1464470:intergenic 50.0%
GGAAATCACACCTTGAGGTG+TGG + tig0044256:1254-1273 Msa1464470:intron 50.0%
! GGAGCAAGGTACTACTTGCA+AGG + tig0044256:2207-2226 Msa1464470:CDS 50.0%
TTACGGCCCACTAAACGAAG+AGG + tig0044256:2242-2261 Msa1464470:CDS 50.0%
AAAAATGCTGCAGCACTCGG+AGG + tig0044256:2339-2358 Msa1464470:CDS 50.0%
ATATGGCAAGGCGAGCAAAG+GGG - tig0044256:2395-2414 Msa1464470:intergenic 50.0%
GTATATGGCAAGGCGAGCAA+AGG - tig0044256:2397-2416 Msa1464470:intergenic 50.0%
GTTTGTCAAATCCTCCCCCT+TGG + tig0044256:2658-2677 Msa1464470:CDS 50.0%
ACCAACGGTGATGATCCAAG+GGG - tig0044256:2676-2695 Msa1464470:intergenic 50.0%
CACCAACGGTGATGATCCAA+GGG - tig0044256:2677-2696 Msa1464470:intergenic 50.0%
TGATGACCTAGGTTCGAACC+AGG + tig0044256:3375-3394 Msa1464470:intron 50.0%
GATGACCTAGGTTCGAACCA+GGG + tig0044256:3376-3395 Msa1464470:intron 50.0%
! CAAATCCCTGGTTCGAACCT+AGG - tig0044256:3384-3403 Msa1464470:intergenic 50.0%
CCTTGACCTTGCTTGGATCA+AGG - tig0044256:3686-3705 Msa1464470:intergenic 50.0%
CCTTGATCCAAGCAAGGTCA+AGG + tig0044256:3683-3702 Msa1464470:CDS 50.0%
ATCTTCCCCTTGACCTTGCT+TGG - tig0044256:3693-3712 Msa1464470:intergenic 50.0%
TTGTGCATGAGAGGACAAGG+TGG + tig0044256:3717-3736 Msa1464470:CDS 50.0%
GGTGGGGTTGGAATTATCCT+TGG + tig0044256:3774-3793 Msa1464470:CDS 50.0%
CCAGGCAAAAGTTGTGCCAT+TGG - tig0044256:3915-3934 Msa1464470:intergenic 50.0%
! CCAATGGCACAACTTTTGCC+TGG + tig0044256:3912-3931 Msa1464470:CDS 50.0%
TACCAAACCAGCACCCTCTA+TGG + tig0044256:3950-3969 Msa1464470:CDS 50.0%
GCTAGAGAACATGGCCATAG+AGG - tig0044256:3967-3986 Msa1464470:intergenic 50.0%
ATGGCCATGTTCTCTAGCAG+AGG + tig0044256:3969-3988 Msa1464470:CDS 50.0%
CATCGATCGCGACAGATTGA+AGG - tig0044256:4228-4247 Msa1464470:intergenic 50.0%
ACTCCAGGAGCTGTTATGTC+AGG - tig0044256:4543-4562 Msa1464470:intergenic 50.0%
GCTGCCAATATGTCTACTCC+AGG - tig0044256:4558-4577 Msa1464470:intergenic 50.0%
GAGTAGACATATTGGCAGCC+TGG + tig0044256:4559-4578 Msa1464470:CDS 50.0%
AGGTCCATCTTTAGCTGTCC+AGG - tig0044256:4580-4599 Msa1464470:intergenic 50.0%
TAGCAGCAGGACTCCAAGTA+GGG - tig0044256:4713-4732 Msa1464470:intergenic 50.0%
ATAGCAGCAGGACTCCAAGT+AGG - tig0044256:4714-4733 Msa1464470:intergenic 50.0%
CTTGGAGTCCTGCTGCTATA+AGG + tig0044256:4715-4734 Msa1464470:CDS 50.0%
AGAGCAGACCTTATAGCAGC+AGG - tig0044256:4726-4745 Msa1464470:intergenic 50.0%
AGGTCTGCTCTCATGACATC+AGG + tig0044256:4735-4754 Msa1464470:CDS 50.0%
CATCAGGATCCACCTGGATA+TGG + tig0044256:4767-4786 Msa1464470:intron 50.0%
GGACAGTCACCAATGTTGGT+AGG + tig0044256:5648-5667 Msa1464470:CDS 50.0%
TATGGCAAGGCGAGCAAAGG+GGG - tig0044256:2394-2413 Msa1464470:intergenic 55.0%
CCAACGGTGATGATCCAAGG+GGG - tig0044256:2675-2694 Msa1464470:intergenic 55.0%
GCACCAACGGTGATGATCCA+AGG - tig0044256:2678-2697 Msa1464470:intergenic 55.0%
GTTCAAAGAGCTGGTGGGGT+TGG + tig0044256:3762-3781 Msa1464470:CDS 55.0%
TCATAGGTCACTCCAGTGGC+AGG - tig0044256:3849-3868 Msa1464470:intergenic 55.0%
! AACATGGCCATAGAGGGTGC+TGG - tig0044256:3960-3979 Msa1464470:intergenic 55.0%
GGGACCTCTGCTAGAGAACA+TGG - tig0044256:3976-3995 Msa1464470:intergenic 55.0%
CGATCGCGACAGATTGAAGG+AGG - tig0044256:4225-4244 Msa1464470:intergenic 55.0%
CAGCCTGACATAACAGCTCC+TGG + tig0044256:4537-4556 Msa1464470:intron 55.0%
GCAGCCTGGACAGCTAAAGA+TGG + tig0044256:4573-4592 Msa1464470:CDS 55.0%
TCAAAGCCGTGCACCCTACT+TGG + tig0044256:4697-4716 Msa1464470:CDS 55.0%
AGGACTCCAAGTAGGGTGCA+CGG - tig0044256:4706-4725 Msa1464470:intergenic 55.0%
CGGCCCACTAAACGAAGAGG+AGG + tig0044256:2245-2264 Msa1464470:CDS 60.0%
GCTCTCGACAAAGACGGCCA+TGG + tig0044256:2279-2298 Msa1464470:CDS 60.0%
ACGGTGATGATCCAAGGGGG+AGG - tig0044256:2672-2691 Msa1464470:intergenic 60.0%
CCCCCTTGGATCATCACCGT+TGG + tig0044256:2672-2691 Msa1464470:CDS 60.0%
!! GGCCATAGAGGGTGCTGGTT+TGG - tig0044256:3955-3974 Msa1464470:intergenic 60.0%
TTCGCCAGCGGTACAGCCTC+TGG + tig0044256:2363-2382 Msa1464470:CDS 65.0%
GCACTCGGAGGCTTCGCCAG+CGG + tig0044256:2351-2370 Msa1464470:CDS 70.0%
GCCAGCGGTACAGCCTCTGG+CGG + tig0044256:2366-2385 Msa1464470:CDS 70.0%
TCCGCCAGAGGCTGTACCGC+TGG - tig0044256:2370-2389 Msa1464470:intergenic 70.0%
AGCAAAGGGGGCTCCGCCAG+AGG - tig0044256:2382-2401 Msa1464470:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0044256 gene 39 6137 39 ID=Msa1464470;Name=Msa1464470
tig0044256 mRNA 39 6137 39 ID=Msa1464470-mRNA-1;Parent=Msa1464470;Name=Msa1464470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=28|1|1|1|1|1|6|230|632
tig0044256 exon 39 188 39 ID=Msa1464470-mRNA-1:exon:24439;Parent=Msa1464470-mRNA-1
tig0044256 exon 2197 2758 2197 ID=Msa1464470-mRNA-1:exon:24440;Parent=Msa1464470-mRNA-1
tig0044256 exon 3462 3559 3462 ID=Msa1464470-mRNA-1:exon:24441;Parent=Msa1464470-mRNA-1
tig0044256 exon 3665 4022 3665 ID=Msa1464470-mRNA-1:exon:24442;Parent=Msa1464470-mRNA-1
tig0044256 exon 4540 4756 4540 ID=Msa1464470-mRNA-1:exon:24443;Parent=Msa1464470-mRNA-1
tig0044256 exon 5366 6137 5366 ID=Msa1464470-mRNA-1:exon:24444;Parent=Msa1464470-mRNA-1
tig0044256 five_prime_UTR 39 66 39 ID=Msa1464470-mRNA-1:five_prime_utr;Parent=Msa1464470-mRNA-1
tig0044256 CDS 67 188 67 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 CDS 2197 2758 2197 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 CDS 3462 3559 3462 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 CDS 3665 4022 3665 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 CDS 4540 4756 4540 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 CDS 5366 5907 5366 ID=Msa1464470-mRNA-1:cds;Parent=Msa1464470-mRNA-1
tig0044256 three_prime_UTR 5908 6137 5908 ID=Msa1464470-mRNA-1:three_prime_utr;Parent=Msa1464470-mRNA-1
Gene Sequence

>Msa1464470

ATGTACATAGGTGTGTGGCCAGATTCAAAGAGCTTTAGTGATAAAGGGATGGGTCCTGTTCCAAAGAAATGGAAAGGAATGTGCATAAATGGAACTAATTTTGATTCATCTAAATGCAATAGAAAGATAGTTGGAGCAAGGTACTACTTGCAAGGTTATGAAAATCATTACGGCCCACTAAACGAAGAGGAGGATTACAAATCAGCTCTCGACAAAGACGGCCATGGAACACACACATCTTCAATAGTGGCAGGGCGAGCCATTAAAAATGCTGCAGCACTCGGAGGCTTCGCCAGCGGTACAGCCTCTGGCGGAGCCCCCTTTGCTCGCCTTGCCATATACAAAGCATGTTGGCCAATAAAAGGAAAACCAAAAAATGAAGGAAACTTTTGCGCAAACATTGATATGCTTAAAGCTATAGATGATGCTATTGAAGATGGTGTTGATGTTTTAAGCATTTCCATAGGGCATTATGGTCCATTGAAATATGAGGATGATGTGATTGCTAAGGGTGCATTACAAGCTGTAAGGAAAAACATTGTGGTTGTTTGTAGTGCTGGAAATTTTGGTCCTTTTCCACATAGTTTGTCAAATCCTCCCCCTTGGATCATCACCGTTGGTGCTAGTACTGTCGATCGAACCTTTCTTGCTCCAATTAAACTTAACAACGGCACAACCATTGAGGGTAGATCAATTACTCCAGTCCACATGGAAAATAGTTTCCGTCCATTAGTTTTGGCTAGCGATGTTGAATATGCAGGCATACTAAGAACAAATTCTGGTTATTGCCAAGACAATACCCTTGATCCAAGCAAGGTCAAGGGGAAGATAATTTTGTGCATGAGAGGACAAGGTGGAAGACTGAACAAAAGTTTTGAAGTTCAAAGAGCTGGTGGGGTTGGAATTATCCTTGGGAACAATAAAACTTATGCAAATGATGTACCTTCTGATCCTTATTTCATTCCTGCCACTGGAGTGACCTATGACAATACCTTAAAACTTGTTCAATATATTCATTCTTCTCCTAATCCAATGGCACAACTTTTGCCTGGAAGAACTGTGTTAGATACCAAACCAGCACCCTCTATGGCCATGTTCTCTAGCAGAGGTCCCAACATAATTGACCCTAATATTCTAAAGCCTGACATAACAGCTCCTGGAGTAGACATATTGGCAGCCTGGACAGCTAAAGATGGACCTACACGTATGAATTTTCGTGATAAACGAGTTGTTAAGTACAATATCATTTCAGGAACTTCAATGTCTTGCCCTCATGTTTCTGCTGCATCAGTTCTTCTCAAAGCCGTGCACCCTACTTGGAGTCCTGCTGCTATAAGGTCTGCTCTCATGACATCAGCTAAGACAACAGACAACACAGGAAATCCAATTACAGATGAAACAGGAAATCCTGCAACACCTTTTTCAATGGGTTCAGGCCACTTCAGCCCTAAAAGAGCATCTAATCCAGGACTCATTTATGATGCATCCTATATGGATTACCTTCTTTACCTTTGCAATCTTAATTTAACACAACACATAAACCTTACATATAATTGTCCAAACCCACTACCTCAACCATTTGATCTCAACTATCCATCTATACAAATCCATAAACTCAATTACACCAAAACTATAAAGAGGACAGTCACCAATGTTGGTAGGACCAAGAGTGTTTACAAGTTTATTGCTAAGTCATCAAAGGAATTTACTATTAAAGCCACTCCAAGTGTTCTGAAATTTACACATGTTGGACAGAAAAGGAATTTTGTAATCACAGTGACAGCAAATAAAGATCAGTTACCAAGTAAGTATGATCCTGAGAAGTACTTTTTTGGTTGGTATACTTGGACCGATAAACATCATATTGTAAGAAGTCCAGTGGCTGTGTCTTTTCAATAA
Protein sequence

>Msa1464470

MYIGVWPDSKSFSDKGMGPVPKKWKGMCINGTNFDSSKCNRKIVGARYYLQGYENHYGPLNEEEDYKSALDKDGHGTHTSSIVAGRAIKNAAALGGFASGTASGGAPFARLAIYKACWPIKGKPKNEGNFCANIDMLKAIDDAIEDGVDVLSISIGHYGPLKYEDDVIAKGALQAVRKNIVVVCSAGNFGPFPHSLSNPPPWIITVGASTVDRTFLAPIKLNNGTTIEGRSITPVHMENSFRPLVLASDVEYAGILRTNSGYCQDNTLDPSKVKGKIILCMRGQGGRLNKSFEVQRAGGVGIILGNNKTYANDVPSDPYFIPATGVTYDNTLKLVQYIHSSPNPMAQLLPGRTVLDTKPAPSMAMFSSRGPNIIDPNILKPDITAPGVDILAAWTAKDGPTRMNFRDKRVVKYNIISGTSMSCPHVSAASVLLKAVHPTWSPAAIRSALMTSAKTTDNTGNPITDETGNPATPFSMGSGHFSPKRASNPGLIYDASYMDYLLYLCNLNLTQHINLTYNCPNPLPQPFDLNYPSIQIHKLNYTKTIKRTVTNVGRTKSVYKFIAKSSKEFTIKATPSVLKFTHVGQKRNFVITVTANKDQLPSKYDPEKYFFGWYTWTDKHHIVRSPVAVSFQ*