AlfalfaGEDB | Msa1389670

M. sativa cultivar zhongmu-4 / Msa1389670

KEGG: K00281
GO: GO:0000166 GO:0001505 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006544 GO:0006546 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042133 GO:0042135 GO:0042221 GO:0042737 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046686 GO:0048046 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606
PFAM: PF02347.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389670	XP_003589000.1	99.527	1056	5	0	1	1056	1	1056	0.0	2197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389670	sp\|P26969\|GCSP_PEA	94.816	1061	46	4	1	1056	1	1057	0.0	1987

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389670	G7I9Z0	99.527	1056	5	0	1	1056	1	1056	0.0	2197

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1389670	0.889936	1.549162e-73	-8.615850e-47
Msa0001040	Msa1389670	0.809336	1.990106e-50	-8.615850e-47
Msa0001510	Msa1389670	0.828351	9.434625e-55	-8.615850e-47
Msa0001550	Msa1389670	0.809288	2.037701e-50	-8.615850e-47
Msa0002110	Msa1389670	0.925508	1.668276e-90	-8.615850e-47
Msa0002690	Msa1389670	0.893242	7.541581e-75	-8.615850e-47
Msa0002700	Msa1389670	0.895698	7.483520e-76	-8.615850e-47
Msa0003340	Msa1389670	0.867437	1.369418e-65	-8.615850e-47
Msa0003450	Msa1389670	0.819929	8.969784e-53	-8.615850e-47
Msa0004180	Msa1389670	0.871558	6.235369e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389670	MtrunA17_Chr1g0151501	99.527	1056	5	0	1	1056	1	1056	0.0	2197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1389670	AT4G33010.1	84.579	1057	136	5	1	1054	1	1033	1836
Msa1389670	AT2G26080.1	84.717	1060	136	7	1	1054	1	1040	1833
Msa1389670	AT4G33010.2	84.833	989	127	4	1	986	1	969	1716

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Find 338 sgRNAs with CRISPR-Local

Find 596 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAAATAAAGAATCA+CGG	0.571310	tig0021290:-26059	Msa1389670:intergenic
AAAACCTCACCTTCAGTACC+AGG	0.558852	tig0021290:-18721	Msa1389670:intergenic
AAAATATTCCTCAAGATCAC+TGG	0.518936	tig0021290:-18349	Msa1389670:intergenic
AAACATAAATAAAGAATCAC+GGG	0.550724	tig0021290:-26058	Msa1389670:intergenic
AAACTACATGGCGAAACGAT+TGG	0.577356	tig0021290:+22805	Msa1389670:CDS
AAAGCTAATAAGGTTACTGG+TGG	0.620023	tig0021290:+25707	Msa1389670:three_prime_UTR
AAAGGGTTCATGGTCTTGCT+GGG	0.486903	tig0021290:+19588	Msa1389670:CDS
AACATCGTTGCAGGCTGAGT+TGG	0.474673	tig0021290:+23322	Msa1389670:intron
AACTCAACCATCCAACCAAG+AGG	0.651121	tig0021290:-25404	Msa1389670:intergenic
AACTTTGCAACACGGAGCCA+TGG	0.549304	tig0021290:-23884	Msa1389670:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAGAAGAACAAACAAAAA+TGG	+	tig0021290:18123-18142	Msa1389670:CDS	30.0%
TCAAATGATTGAACACATGA+AGG	+	tig0021290:18258-18277	Msa1389670:CDS	30.0%
AAAATATTCCTCAAGATCAC+TGG	-	tig0021290:18352-18371	Msa1389670:intergenic	30.0%
TAATGAGGTTAAGGTTGTTA+TGG	+	tig0021290:18777-18796	Msa1389670:CDS	30.0%
TAGCCTTTAAATCACTTATG+TGG	+	tig0021290:19177-19196	Msa1389670:intron	30.0%
AAAAGGTCTGAATACAATCT+GGG	-	tig0021290:19266-19285	Msa1389670:intergenic	30.0%
GATACTTTGTACTTGTAACA+TGG	+	tig0021290:19366-19385	Msa1389670:intron	30.0%
ATACTTTGACTATCTTGTTC+AGG	+	tig0021290:19402-19421	Msa1389670:intron	30.0%
TTGCATAAGTGAATTAGTTG+AGG	+	tig0021290:19464-19483	Msa1389670:intron	30.0%
ATCAATTTGAGAGTTGTAGA+TGG	+	tig0021290:19734-19753	Msa1389670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021290	gene	17664	26072	17664	ID=Msa1389670;Name=Msa1389670
tig0021290	mRNA	17664	26072	17664	ID=Msa1389670-mRNA-1;Parent=Msa1389670;Name=Msa1389670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=148\|1\|1\|1\|1\|1\|15\|1128\|1056
tig0021290	exon	17664	19077	17664	ID=Msa1389670-mRNA-1:exon:11743;Parent=Msa1389670-mRNA-1
tig0021290	exon	19518	19763	19518	ID=Msa1389670-mRNA-1:exon:11744;Parent=Msa1389670-mRNA-1
tig0021290	exon	19869	19946	19869	ID=Msa1389670-mRNA-1:exon:11745;Parent=Msa1389670-mRNA-1
tig0021290	exon	20403	20503	20403	ID=Msa1389670-mRNA-1:exon:11746;Parent=Msa1389670-mRNA-1
tig0021290	exon	20599	20794	20599	ID=Msa1389670-mRNA-1:exon:11747;Parent=Msa1389670-mRNA-1
tig0021290	exon	21184	21309	21184	ID=Msa1389670-mRNA-1:exon:11748;Parent=Msa1389670-mRNA-1
tig0021290	exon	21654	21839	21654	ID=Msa1389670-mRNA-1:exon:11749;Parent=Msa1389670-mRNA-1
tig0021290	exon	21953	22066	21953	ID=Msa1389670-mRNA-1:exon:11750;Parent=Msa1389670-mRNA-1
tig0021290	exon	22292	22444	22292	ID=Msa1389670-mRNA-1:exon:11751;Parent=Msa1389670-mRNA-1
tig0021290	exon	22641	22829	22641	ID=Msa1389670-mRNA-1:exon:11752;Parent=Msa1389670-mRNA-1
tig0021290	exon	22926	23003	22926	ID=Msa1389670-mRNA-1:exon:11753;Parent=Msa1389670-mRNA-1
tig0021290	exon	23094	23219	23094	ID=Msa1389670-mRNA-1:exon:11754;Parent=Msa1389670-mRNA-1
tig0021290	exon	23335	23433	23335	ID=Msa1389670-mRNA-1:exon:11755;Parent=Msa1389670-mRNA-1
tig0021290	exon	23803	23920	23803	ID=Msa1389670-mRNA-1:exon:11756;Parent=Msa1389670-mRNA-1
tig0021290	exon	24850	26072	24850	ID=Msa1389670-mRNA-1:exon:11757;Parent=Msa1389670-mRNA-1
tig0021290	five_prime_UTR	17664	17811	17664	ID=Msa1389670-mRNA-1:five_prime_utr;Parent=Msa1389670-mRNA-1
tig0021290	CDS	17812	19077	17812	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	19518	19763	19518	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	19869	19946	19869	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	20403	20503	20403	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	20599	20794	20599	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	21184	21309	21184	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	21654	21839	21654	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	21953	22066	21953	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	22292	22444	22292	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	22641	22829	22641	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	22926	23003	22926	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	23094	23219	23094	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	23335	23433	23335	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	23803	23920	23803	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	CDS	24850	24944	24850	ID=Msa1389670-mRNA-1:cds;Parent=Msa1389670-mRNA-1
tig0021290	three_prime_UTR	24945	26072	24945	ID=Msa1389670-mRNA-1:three_prime_utr;Parent=Msa1389670-mRNA-1

Gene Sequence

>Msa1389670

ATGGAACGTGCAAGAAGACTCGCAAACCGTGCAACTCTGAAACGTCTTCTTTCAGAGGCAAAGCAGAATTGTAAGAACGAATCAACAACAACAACAGCACCTCTTCCATTTTCATCTTCATCAAGATATGTTTCCTCTGTTTCAAACTCTGTTTTCAGAAACAGAGGATCCAACGTTTTTGGAAGAAACAGCAATGTTTCACGTGGTGTTGGTGGATTTCACGGTTCTGGGTCTTCAACACAATCTCGATCCATCACTGTTGAAGCTTTGAAACCAAGTGATACATTCGCAAGACGCCATAACTCAGCTACACCAGAAGAACAAACAAAAATGGCTGAATCATGTGGTTTTGATCATCTTGATTCACTTGTTGATGCAACAGTTCCGAAATCAATCCGTTTGAAGGAAATGAAGTTTAACAAGTTTGATGAAGGGTTAACAGAAGGTCAAATGATTGAACACATGAAGGATTTAGCTTCAAAGAATAAGGTTTTCAAATCTTTCATTGGTATGGGATACTATAACACACATGTTCCACCAGTGATCTTGAGGAATATTTTGGAGAATCCTGCTTGGTATACTCAGTATACACCTTATCAAGCTGAGATTTCGCAAGGTCGTCTTGAATCGTTGTTGAATTTTCAAACCTTGATTACTGATCTCACTGGTTTGCCTATGTCAAATGCTTCATTGCTTGATGAAGGTACTGCTGCAGCTGAAGCAATGTCTATGTGTAATAATATTCAAAAGGGTAAGAAGAAGACTTTTATTATTGCTAGTAATTGTCATCCACAGACTATTGATATATGTAAGACAAGAGCTGATGGATTTGAGCTTAAGGTTGTGGTGAAAGATCTTAAGGATATTGATTACAAATCCGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCTGGTACTGAAGGTGAGGTTTTGGATTATGGTGAGTTTATTAAGAAGGCTCATGCTAATGAGGTTAAGGTTGTTATGGCAAGTGATCTATTGGCATTGACTGTGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTTGGTTCAGCTCAGAGATTTGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCCTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGAAGAATCATTGGTGTTAGTGTTGATTCTTCTGGAAAGCCAGCTTTGAGGATGGCTATGCAAACTCGGGAACAGCATATCCGTAGGGATAAGGCTACTAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAGCTATTGCACAAAGGGTTCATGGTCTTGCTGGGGTATTTGCTTTGGGACTAAAGAAACTTGGAACAGTGGAAGTTCAGGATCTTGGCTTCTTTGACACTGTGAAGGTTAAGACTTCAAATGCCAAAGCAATTGCAGATGCTGCTGTCAAAAGTGAAATCAATTTGAGAGTTGTAGATGGAAACACCATCACTGTTGCTTTTGATGAAACAACTACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGCAAGCCTGTCTCATTCACAGCTGCGTCTCTTGCACCAGAATTTCAGAATGCAATTCCTTCTGGATTAGTTAGGGAGACTCCTTATTTGACACACCCTATCTTTAACACGTACCAAACTGAGCACGAGTTGTTGAGATACATTCATAGGCTACAATCAAAAGATCTCTCACTTTGCCACAGTATGATCCCACTTGGATCCTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTACTGATATTCACCCTTTTGCACCAACTGAACAGGCTCAAGGTTACCAGGAAATGTTCGACAATTTGGGTGACCTGTTGTGTACCATCACTGGATTTGATTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTCATGGTTATCCGTGCATATCATATGTCAAGAGGTGACCACCACCGCAATGTCTGCATTATACCAGTCTCAGCACATGGTACCAATCCTGCTAGTGCCGCTATGTGTGGAATGAAAATTGTCACCATAGGAACTGATGCCAAGGGAAACATTAACATTGAAGAGTTGAAGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCATTTATGGTTACATATCCTTCAACTCACGGTGTTTATGAAGAAGGTATTGATGATATTTGCAAGATCATCCATGATAATGGAGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTCAATCTCCACAAGACATTTTGCATTCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCCTCACACCCTGTGGTGCCAACTGGTGGAATTCCTGCCCCTGAAAATGCTCAACCACTTGGTAGTATCTCAGCTGCACCTTGGGGATCAGCGCTCATATTGCCTATCTCTTACACATACATAGCCATGATGGGTTCCAAAGGACTCACTGACGCGTCAAAGATAGCCATTTTGAATGCAAACTACATGGCGAAACGATTGGAGAGTTATTACCCGGTTCTTTTCCGTGGAGTCAACGGAACATGTGCTCATGAGTTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCGAAGCGTCTCATGGACTATGGATTTCATGGACCAACAATGTCATGGCCTGTGCCTGGTACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTGGATAGGTTTTGTGATGCTCTCATTTCCATTAGAAAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGATGTTCACAACAATGTTCTTAAGGGAGCTCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAGCCATATTCCAGGGAATATGCAGCCTTCCCTGCTCCATGGCTCCGTGTTGCAAAGTTTTGGCCTACCAATGGACGTGTTGATAATGTGTATGGTGACCGCAACCTGATCTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCCACAGCATAA

Protein sequence

>Msa1389670

MERARRLANRATLKRLLSEAKQNCKNESTTTTAPLPFSSSSRYVSSVSNSVFRNRGSNVFGRNSNVSRGVGGFHGSGSSTQSRSITVEALKPSDTFARRHNSATPEEQTKMAESCGFDHLDSLVDATVPKSIRLKEMKFNKFDEGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNFQTLITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFELKVVVKDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLGTVEVQDLGFFDTVKVKTSNAKAIADAAVKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPSGLVRETPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPTEQAQGYQEMFDNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVTIGTDAKGNINIEELKKAAETHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENAQPLGSISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAEIEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRVAKFWPTNGRVDNVYGDRNLICTLLPASQAVEEQAAATA*