Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008060 | XP_003621371.1 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 4.25e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008060 | sp|Q75GT2|MUB1_ORYSJ | 65.546 | 119 | 36 | 3 | 3 | 119 | 4 | 119 | 3.05e-49 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008060 | G7L472 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.03e-81 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa1008060 | -0.830535 | 2.780528e-55 | -8.615850e-47 |
| Msa0016670 | Msa1008060 | -0.844782 | 6.106698e-59 | -8.615850e-47 |
| Msa0021810 | Msa1008060 | -0.807756 | 4.326593e-50 | -8.615850e-47 |
| Msa0024210 | Msa1008060 | 0.806636 | 7.472949e-50 | -8.615850e-47 |
| Msa0030310 | Msa1008060 | -0.809224 | 2.103319e-50 | -8.615850e-47 |
| Msa0032840 | Msa1008060 | 0.874605 | 5.928287e-68 | -8.615850e-47 |
| Msa0041620 | Msa1008060 | -0.821179 | 4.633840e-53 | -8.615850e-47 |
| Msa0072810 | Msa1008060 | -0.802482 | 5.494732e-49 | -8.615850e-47 |
| Msa0073670 | Msa1008060 | -0.854936 | 8.829778e-62 | -8.615850e-47 |
| Msa0077200 | Msa1008060 | -0.801201 | 1.006821e-48 | -8.615850e-47 |
| Msa0095380 | Msa1008060 | -0.832172 | 1.100056e-55 | -8.615850e-47 |
| Msa0096670 | Msa1008060 | -0.835648 | 1.484742e-56 | -8.615850e-47 |
| Msa0103170 | Msa1008060 | -0.821823 | 3.289967e-53 | -8.615850e-47 |
| Msa0110970 | Msa1008060 | -0.827915 | 1.201399e-54 | -8.615850e-47 |
| Msa0114540 | Msa1008060 | 0.859883 | 3.038884e-63 | -8.615850e-47 |
| Msa0615870 | Msa1008060 | -0.806418 | 8.305984e-50 | -8.615850e-47 |
| Msa0639120 | Msa1008060 | -0.801064 | 1.074060e-48 | -8.615850e-47 |
| Msa0663900 | Msa1008060 | -0.817690 | 2.893145e-52 | -8.615850e-47 |
| Msa0664960 | Msa1008060 | -0.810798 | 9.635489e-51 | -8.615850e-47 |
| Msa0669850 | Msa1008060 | -0.816792 | 4.607403e-52 | -8.615850e-47 |
| Msa0670980 | Msa1008060 | -0.800641 | 1.310505e-48 | -8.615850e-47 |
| Msa0673010 | Msa1008060 | 0.814986 | 1.165092e-51 | -8.615850e-47 |
| Msa0680240 | Msa1008060 | -0.835733 | 1.413180e-56 | -8.615850e-47 |
| Msa0684500 | Msa1008060 | -0.813849 | 2.078096e-51 | -8.615850e-47 |
| Msa0687630 | Msa1008060 | -0.816706 | 4.815508e-52 | -8.615850e-47 |
| Msa0701280 | Msa1008060 | -0.800185 | 1.622730e-48 | -8.615850e-47 |
| Msa0703230 | Msa1008060 | -0.821723 | 3.470065e-53 | -8.615850e-47 |
| Msa0743800 | Msa1008060 | -0.807770 | 4.296282e-50 | -8.615850e-47 |
| Msa0752510 | Msa1008060 | -0.808495 | 3.012222e-50 | -8.615850e-47 |
| Msa0755340 | Msa1008060 | -0.800553 | 1.365637e-48 | -8.615850e-47 |
| Msa0759030 | Msa1008060 | -0.806557 | 7.762002e-50 | -8.615850e-47 |
| Msa0762210 | Msa1008060 | -0.803144 | 4.009623e-49 | -8.615850e-47 |
| Msa0771280 | Msa1008060 | -0.801387 | 9.221382e-49 | -8.615850e-47 |
| Msa0794510 | Msa1008060 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
| Msa0797750 | Msa1008060 | -0.823390 | 1.421248e-53 | -8.615850e-47 |
| Msa0798000 | Msa1008060 | 0.801243 | 9.872965e-49 | -8.615850e-47 |
| Msa0824640 | Msa1008060 | -0.818337 | 2.065965e-52 | -8.615850e-47 |
| Msa0830880 | Msa1008060 | -0.805899 | 1.068333e-49 | -8.615850e-47 |
| Msa0835280 | Msa1008060 | -0.813292 | 2.756056e-51 | -8.615850e-47 |
| Msa0837350 | Msa1008060 | 0.811257 | 7.665642e-51 | -8.615850e-47 |
| Msa0124340 | Msa1008060 | -0.813636 | 2.314990e-51 | -8.615850e-47 |
| Msa0137610 | Msa1008060 | 0.810330 | 1.216473e-50 | -8.615850e-47 |
| Msa0138820 | Msa1008060 | 0.823302 | 1.490283e-53 | -8.615850e-47 |
| Msa0143080 | Msa1008060 | -0.832533 | 8.955113e-56 | -8.615850e-47 |
| Msa0143240 | Msa1008060 | 0.805238 | 1.470403e-49 | -8.615850e-47 |
| Msa0148100 | Msa1008060 | -0.800053 | 1.725808e-48 | -8.615850e-47 |
| Msa0172350 | Msa1008060 | -0.813794 | 2.136778e-51 | -8.615850e-47 |
| Msa0172960 | Msa1008060 | 0.849188 | 3.796794e-60 | -8.615850e-47 |
| Msa0182620 | Msa1008060 | 0.804083 | 2.561404e-49 | -8.615850e-47 |
| Msa0185900 | Msa1008060 | -0.804730 | 1.877445e-49 | -8.615850e-47 |
| Msa0186890 | Msa1008060 | -0.819882 | 9.194911e-53 | -8.615850e-47 |
| Msa0194280 | Msa1008060 | -0.821598 | 3.707424e-53 | -8.615850e-47 |
| Msa0194970 | Msa1008060 | -0.812726 | 3.666641e-51 | -8.615850e-47 |
| Msa0197780 | Msa1008060 | -0.805487 | 1.303842e-49 | -8.615850e-47 |
| Msa0222920 | Msa1008060 | -0.846446 | 2.161418e-59 | -8.615850e-47 |
| Msa0230550 | Msa1008060 | 0.868867 | 4.745890e-66 | -8.615850e-47 |
| Msa0235980 | Msa1008060 | -0.800769 | 1.233939e-48 | -8.615850e-47 |
| Msa0236270 | Msa1008060 | -0.809900 | 1.505388e-50 | -8.615850e-47 |
| Msa0236980 | Msa1008060 | -0.848636 | 5.401458e-60 | -8.615850e-47 |
| Msa0376040 | Msa1008060 | -0.835375 | 1.740529e-56 | -8.615850e-47 |
| Msa0414950 | Msa1008060 | 0.813524 | 2.451088e-51 | -8.615850e-47 |
| Msa0416400 | Msa1008060 | -0.804448 | 2.149924e-49 | -8.615850e-47 |
| Msa0417610 | Msa1008060 | 0.832672 | 8.269130e-56 | -8.615850e-47 |
| Msa0422850 | Msa1008060 | -0.807948 | 3.938791e-50 | -8.615850e-47 |
| Msa0422910 | Msa1008060 | -0.801147 | 1.032769e-48 | -8.615850e-47 |
| Msa0422930 | Msa1008060 | -0.803746 | 3.008565e-49 | -8.615850e-47 |
| Msa0425940 | Msa1008060 | -0.801065 | 1.073424e-48 | -8.615850e-47 |
| Msa0429210 | Msa1008060 | -0.800605 | 1.332259e-48 | -8.615850e-47 |
| Msa0436280 | Msa1008060 | 0.835710 | 1.431986e-56 | -8.615850e-47 |
| Msa0437690 | Msa1008060 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0469910 | Msa1008060 | 0.816608 | 5.065954e-52 | -8.615850e-47 |
| Msa0996080 | Msa1008060 | -0.843341 | 1.487101e-58 | -8.615850e-47 |
| Msa1000940 | Msa1008060 | -0.812661 | 3.788581e-51 | -8.615850e-47 |
| Msa1004900 | Msa1008060 | 0.812459 | 4.194313e-51 | -8.615850e-47 |
| Msa1008060 | Msa1012700 | -0.805816 | 1.111765e-49 | -8.615850e-47 |
| Msa1008060 | Msa1013770 | -0.800479 | 1.413770e-48 | -8.615850e-47 |
| Msa1008060 | Msa1040400 | -0.816240 | 6.124571e-52 | -8.615850e-47 |
| Msa1008060 | Msa1044340 | -0.800298 | 1.539267e-48 | -8.615850e-47 |
| Msa1008060 | Msa1049510 | 0.882928 | 6.898570e-71 | -8.615850e-47 |
| Msa1008060 | Msa1082700 | -0.821089 | 4.859342e-53 | -8.615850e-47 |
| Msa1008060 | Msa1094420 | -0.824522 | 7.712632e-54 | -8.615850e-47 |
| Msa1008060 | Msa1127890 | -0.801776 | 7.676948e-49 | -8.615850e-47 |
| Msa1008060 | Msa1134110 | -0.828768 | 7.482049e-55 | -8.615850e-47 |
| Msa1008060 | Msa1139810 | -0.814635 | 1.393424e-51 | -8.615850e-47 |
| Msa1008060 | Msa1165870 | -0.823021 | 1.732928e-53 | -8.615850e-47 |
| Msa1008060 | Msa1166010 | -0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa1008060 | Msa1183660 | -0.803923 | 2.765250e-49 | -8.615850e-47 |
| Msa1008060 | Msa1193950 | 0.830438 | 2.936199e-55 | -8.615850e-47 |
| Msa1008060 | Msa1204250 | -0.803200 | 3.904884e-49 | -8.615850e-47 |
| Msa1008060 | Msa1208890 | 0.800521 | 1.386220e-48 | -8.615850e-47 |
| Msa1008060 | Msa1218280 | 0.830477 | 2.872769e-55 | -8.615850e-47 |
| Msa1008060 | Msa1237030 | -0.824739 | 6.855036e-54 | -8.615850e-47 |
| Msa1008060 | Msa1246530 | 0.808194 | 3.492011e-50 | -8.615850e-47 |
| Msa1008060 | Msa1249200 | 0.809676 | 1.682144e-50 | -8.615850e-47 |
| Msa1008060 | Msa1269580 | 0.831495 | 1.616422e-55 | -8.615850e-47 |
| Msa1008060 | Msa1283990 | -0.809467 | 1.865689e-50 | -8.615850e-47 |
| Msa1008060 | Msa1284260 | -0.801138 | 1.037069e-48 | -8.615850e-47 |
| Msa1008060 | Msa1299360 | -0.804041 | 2.612412e-49 | -8.615850e-47 |
| Msa1008060 | Msa1307950 | -0.803177 | 3.947771e-49 | -8.615850e-47 |
| Msa1008060 | Msa1333110 | -0.803716 | 3.052349e-49 | -8.615850e-47 |
| Msa1008060 | Msa1341070 | -0.810117 | 1.352066e-50 | -8.615850e-47 |
| Msa1008060 | Msa1346370 | -0.805515 | 1.286301e-49 | -8.615850e-47 |
| Msa1008060 | Msa1365150 | -0.813758 | 2.176153e-51 | -8.615850e-47 |
| Msa1008060 | Msa1367880 | -0.820596 | 6.307944e-53 | -8.615850e-47 |
| Msa1008060 | Msa1373510 | -0.811095 | 8.309773e-51 | -8.615850e-47 |
| Msa1008060 | Msa1382310 | -0.804187 | 2.436279e-49 | -8.615850e-47 |
| Msa1008060 | Msa1382410 | -0.825568 | 4.366891e-54 | -8.615850e-47 |
| Msa1008060 | Msa1390310 | -0.801482 | 8.819472e-49 | -8.615850e-47 |
| Msa1008060 | Msa1403580 | 0.810074 | 1.381097e-50 | -8.615850e-47 |
| Msa1008060 | Msa1404190 | -0.826127 | 3.217091e-54 | -8.615850e-47 |
| Msa1008060 | Msa1429360 | 0.835065 | 2.083928e-56 | -8.615850e-47 |
| Msa1008060 | Msa1448510 | -0.825051 | 5.785921e-54 | -8.615850e-47 |
| Msa1008060 | Msa1460470 | -0.815854 | 7.466556e-52 | -8.615850e-47 |
| Msa1008060 | Msa1461300 | -0.809612 | 1.735863e-50 | -8.615850e-47 |
| Msa1008060 | Msa1461490 | -0.804596 | 2.002285e-49 | -8.615850e-47 |
| Msa0241800 | Msa1008060 | -0.804346 | 2.257455e-49 | -8.615850e-47 |
| Msa0259560 | Msa1008060 | -0.811911 | 5.523108e-51 | -8.615850e-47 |
| Msa0264350 | Msa1008060 | -0.823870 | 1.097367e-53 | -8.615850e-47 |
| Msa0267760 | Msa1008060 | -0.811221 | 7.801868e-51 | -8.615850e-47 |
| Msa0270220 | Msa1008060 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0274290 | Msa1008060 | -0.800914 | 1.152531e-48 | -8.615850e-47 |
| Msa0294560 | Msa1008060 | 0.822242 | 2.631171e-53 | -8.615850e-47 |
| Msa0302450 | Msa1008060 | -0.804071 | 2.575348e-49 | -8.615850e-47 |
| Msa0314480 | Msa1008060 | -0.807094 | 5.977144e-50 | -8.615850e-47 |
| Msa0328210 | Msa1008060 | -0.823222 | 1.556078e-53 | -8.615850e-47 |
| Msa0334040 | Msa1008060 | -0.805366 | 1.382411e-49 | -8.615850e-47 |
| Msa0509950 | Msa1008060 | 0.804545 | 2.052118e-49 | -8.615850e-47 |
| Msa0516040 | Msa1008060 | -0.831597 | 1.525549e-55 | -8.615850e-47 |
| Msa0525340 | Msa1008060 | -0.825796 | 3.856136e-54 | -8.615850e-47 |
| Msa0526710 | Msa1008060 | -0.810937 | 8.992625e-51 | -8.615850e-47 |
| Msa0535030 | Msa1008060 | -0.801534 | 8.604411e-49 | -8.615850e-47 |
| Msa0541860 | Msa1008060 | -0.821603 | 3.698315e-53 | -8.615850e-47 |
| Msa0552810 | Msa1008060 | -0.825529 | 4.460665e-54 | -8.615850e-47 |
| Msa0553220 | Msa1008060 | 0.804018 | 2.641415e-49 | -8.615850e-47 |
| Msa0560470 | Msa1008060 | -0.815812 | 7.631100e-52 | -8.615850e-47 |
| Msa0581070 | Msa1008060 | -0.807613 | 4.641372e-50 | -8.615850e-47 |
| Msa0591060 | Msa1008060 | -0.834865 | 2.340385e-56 | -8.615850e-47 |
| Msa0591770 | Msa1008060 | -0.822144 | 2.771385e-53 | -8.615850e-47 |
| Msa0850960 | Msa1008060 | -0.815000 | 1.156947e-51 | -8.615850e-47 |
| Msa0864010 | Msa1008060 | -0.828722 | 7.674508e-55 | -8.615850e-47 |
| Msa0872310 | Msa1008060 | -0.807524 | 4.846981e-50 | -8.615850e-47 |
| Msa0875620 | Msa1008060 | -0.805256 | 1.457500e-49 | -8.615850e-47 |
| Msa0883030 | Msa1008060 | -0.809277 | 2.048421e-50 | -8.615850e-47 |
| Msa0893480 | Msa1008060 | 0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa0896220 | Msa1008060 | -0.810734 | 9.947486e-51 | -8.615850e-47 |
| Msa0901160 | Msa1008060 | 0.824174 | 9.309376e-54 | -8.615850e-47 |
| Msa0922540 | Msa1008060 | -0.800312 | 1.529034e-48 | -8.615850e-47 |
| Msa0930780 | Msa1008060 | -0.819483 | 1.134100e-52 | -8.615850e-47 |
| Msa0936340 | Msa1008060 | -0.808978 | 2.374594e-50 | -8.615850e-47 |
| Msa0937550 | Msa1008060 | -0.809368 | 1.958820e-50 | -8.615850e-47 |
| Msa0957450 | Msa1008060 | 0.815565 | 8.661471e-52 | -8.615850e-47 |
| Msa0966720 | Msa1008060 | 0.819777 | 9.719895e-53 | -8.615850e-47 |
| Msa0970520 | Msa1008060 | -0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0974810 | Msa1008060 | -0.806698 | 7.247842e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008060 | MtrunA17_Chr7g0218501 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 3.91e-85 | 243 |
| Msa1008060 | MtrunA17_Chr6g0454091 | 76.471 | 119 | 26 | 1 | 1 | 119 | 1 | 117 | 1.35e-60 | 181 |
| Msa1008060 | MtrunA17_Chr7g0224251 | 51.695 | 118 | 53 | 2 | 4 | 119 | 3 | 118 | 1.37e-37 | 123 |
| Msa1008060 | MtrunA17_Chr7g0224241 | 58.242 | 91 | 36 | 1 | 6 | 96 | 5 | 93 | 8.53e-32 | 114 |
| Msa1008060 | MtrunA17_Chr8g0386041 | 45.299 | 117 | 60 | 2 | 5 | 119 | 4 | 118 | 1.46e-31 | 108 |
| Msa1008060 | MtrunA17_Chr7g0268701 | 40.678 | 118 | 65 | 4 | 1 | 116 | 1 | 115 | 6.71e-27 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008060 | AT3G01050.2 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1008060 | AT3G01050.3 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1008060 | AT3G01050.1 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1008060 | AT3G01050.4 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1008060 | AT3G01050.5 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1008060 | AT5G15460.2 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1008060 | AT5G15460.1 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1008060 | AT5G15460.4 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1008060 | AT1G22050.1 | 49.587 | 121 | 57 | 3 | 1 | 119 | 1 | 119 | 4.29e-41 | 132 |
| Msa1008060 | AT1G77870.1 | 52.101 | 119 | 55 | 2 | 3 | 119 | 2 | 120 | 7.91e-39 | 127 |
| Msa1008060 | AT4G24990.2 | 48.718 | 117 | 56 | 2 | 5 | 119 | 4 | 118 | 1.64e-32 | 110 |
| Msa1008060 | AT4G24990.1 | 48.718 | 117 | 56 | 2 | 5 | 119 | 4 | 118 | 1.64e-32 | 110 |
| Msa1008060 | AT3G26980.1 | 45.833 | 120 | 59 | 3 | 4 | 119 | 3 | 120 | 5.96e-32 | 109 |
| Msa1008060 | AT5G15460.3 | 51.163 | 86 | 37 | 2 | 37 | 119 | 11 | 94 | 2.76e-19 | 76.6 |
Find 73 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAACTTTACAAGTTTCT+TGG | 0.232597 | 7_1:-7970108 | Msa1008060:five_prime_UTR |
| TTGTTAAAATCACGAGAATT+TGG | 0.233810 | 7_1:+7970713 | None:intergenic |
| ACTTGATCTCAAACTGTTCT+TGG | 0.235141 | 7_1:+7970064 | None:intergenic |
| TAGGTCATTTGGTTCTTTAA+TGG | 0.251440 | 7_1:-7967255 | Msa1008060:three_prime_UTR |
| TTCTTCTTCATCTTCAATCT+AGG | 0.307764 | 7_1:-7970746 | Msa1008060:five_prime_UTR |
| CTCAAACTGTTCTTGGTTCC+CGG | 0.316859 | 7_1:+7970071 | None:intergenic |
| CTTGTTATAATTAGGTCATT+TGG | 0.325336 | 7_1:-7967266 | Msa1008060:three_prime_UTR |
| GTTTGGAGATACATTACATT+TGG | 0.330094 | 7_1:+7967229 | None:intergenic |
| TGTTGGAACTTGTTATAATT+AGG | 0.356807 | 7_1:-7967274 | Msa1008060:three_prime_UTR |
| TTCCTCATACACAAATTATT+CGG | 0.359259 | 7_1:-7967681 | Msa1008060:three_prime_UTR |
| AGTGGCGGCAGGAAAACTTT+TGG | 0.362153 | 7_1:+7970011 | None:intergenic |
| TTAGATGAGAAACTCTGATT+TGG | 0.366421 | 7_1:-7967115 | Msa1008060:three_prime_UTR |
| CACATAAAGGGCTTTGGCTC+TGG | 0.376161 | 7_1:+7968822 | None:intergenic |
| TTTCAAATGACCCAAGTGTT+TGG | 0.376228 | 7_1:+7967212 | None:intergenic |
| TTTGGAGATACATTACATTT+GGG | 0.386862 | 7_1:+7967230 | None:intergenic |
| CCACCAAGACAAGTACTCTT+TGG | 0.387227 | 7_1:+7967632 | None:intergenic |
| TTGACGGATGGTTCTGATAT+CGG | 0.410506 | 7_1:-7970036 | Msa1008060:CDS |
| GTCTACAAACATTTCGCATC+AGG | 0.420308 | 7_1:+7967439 | None:intergenic |
| GTACCAGGGGTATCACATAA+AGG | 0.432829 | 7_1:+7968809 | None:intergenic |
| AACAGTTTGAGATCAAGTTT+AGG | 0.441071 | 7_1:-7970059 | Msa1008060:CDS |
| CTTGGATCTCCGAGCATGAC+CGG | 0.442129 | 7_1:-7970090 | Msa1008060:exon |
| GATGAGAAACTCTGATTTGG+TGG | 0.443615 | 7_1:-7967112 | Msa1008060:three_prime_UTR |
| TGAGATCAAGTTTAGGTTGA+CGG | 0.445292 | 7_1:-7970052 | Msa1008060:CDS |
| AAAGCGTATCACATGCATAC+TGG | 0.459512 | 7_1:+7967079 | None:intergenic |
| TCTTGGTTCCCGGTCATGCT+CGG | 0.467045 | 7_1:+7970081 | None:intergenic |
| TGACCCTTGGTATGTTCAGT+AGG | 0.467305 | 7_1:-7967139 | Msa1008060:three_prime_UTR |
| ATCAGATACAGTACAACAAA+TGG | 0.474515 | 7_1:+7967495 | None:intergenic |
| AAGAAAGTATTCTTGCTCAA+TGG | 0.479119 | 7_1:-7969972 | Msa1008060:CDS |
| TTTCATAAAGTGGCTGATGA+AGG | 0.486244 | 7_1:+7967538 | None:intergenic |
| TACCAGGGGTATCACATAAA+GGG | 0.490754 | 7_1:+7968810 | None:intergenic |
| TTTGGAAAATGATGATTTGA+GGG | 0.491457 | 7_1:-7967302 | Msa1008060:three_prime_UTR |
| ATTCTTGCTCAATGGCCAAA+AGG | 0.495557 | 7_1:-7969964 | Msa1008060:intron |
| GGGTATCACATAAAGGGCTT+TGG | 0.495798 | 7_1:+7968816 | None:intergenic |
| TGCATTGTTGTAACAGTACC+AGG | 0.498824 | 7_1:+7968794 | None:intergenic |
| ACTTTATCTCTATTATGAAA+CGG | 0.501471 | 7_1:-7967340 | Msa1008060:three_prime_UTR |
| CCAAAGAGTACTTGTCTTGG+TGG | 0.502636 | 7_1:-7967632 | Msa1008060:three_prime_UTR |
| TTGGATGTAGTAACAATATG+AGG | 0.503509 | 7_1:+7967651 | None:intergenic |
| AGCCGAATAATTTGTGTATG+AGG | 0.508584 | 7_1:+7967679 | None:intergenic |
| GGGAGAAAAGTAAGGAAAGA+GGG | 0.522439 | 7_1:+7970894 | None:intergenic |
| GTTTGGAAAATGATGATTTG+AGG | 0.532846 | 7_1:-7967303 | Msa1008060:three_prime_UTR |
| CAAAGAGTACTTGTCTTGGT+GGG | 0.534485 | 7_1:-7967631 | Msa1008060:three_prime_UTR |
| TGGGAGAAAAGTAAGGAAAG+AGG | 0.538600 | 7_1:+7970893 | None:intergenic |
| GATTTGAAGTTAATCAGTGC+AGG | 0.542038 | 7_1:-7968881 | Msa1008060:CDS |
| CTCAATTGAAGTGATTTCAA+AGG | 0.545197 | 7_1:-7970179 | Msa1008060:five_prime_UTR |
| ATGATTTGAGGGTTGTGTGT+TGG | 0.545496 | 7_1:-7967291 | Msa1008060:three_prime_UTR |
| TTTCAATGTTGCAATACTAG+TGG | 0.550833 | 7_1:+7969993 | None:intergenic |
| TTGGATCTCCGAGCATGACC+GGG | 0.551174 | 7_1:-7970089 | Msa1008060:exon |
| ATCAGACCTTTGTCTGTAGT+AGG | 0.563127 | 7_1:+7968755 | None:intergenic |
| AGACCTTTGTCTGTAGTAGG+TGG | 0.569774 | 7_1:+7968758 | None:intergenic |
| CATCCAAAGAGTACTTGTCT+TGG | 0.575373 | 7_1:-7967635 | Msa1008060:three_prime_UTR |
| GTAATGTATCTCCAAACACT+TGG | 0.577932 | 7_1:-7967223 | Msa1008060:three_prime_UTR |
| ATCAAGTTTAGGTTGACGGA+TGG | 0.578278 | 7_1:-7970048 | Msa1008060:CDS |
| CAATGTTGCAATACTAGTGG+CGG | 0.583009 | 7_1:+7969996 | None:intergenic |
| GTTGCAATACTAGTGGCGGC+AGG | 0.593429 | 7_1:+7970000 | None:intergenic |
| TAAACCTACTGAACATACCA+AGG | 0.604174 | 7_1:+7967135 | None:intergenic |
| AAAGAGTACTTGTCTTGGTG+GGG | 0.607936 | 7_1:-7967630 | Msa1008060:three_prime_UTR |
| TAATGTATCTCCAAACACTT+GGG | 0.618943 | 7_1:-7967222 | Msa1008060:three_prime_UTR |
| TCTCTAACCGTAAACACCTA+CGG | 0.622542 | 7_1:+7967740 | None:intergenic |
| TTGGAGAACAACAAAACAGT+CGG | 0.627089 | 7_1:-7968851 | Msa1008060:CDS |
| AGCCCTTTATGTGATACCCC+TGG | 0.627346 | 7_1:-7968812 | Msa1008060:CDS |
| TGGGGATATTGTGAATCTAG+TGG | 0.628252 | 7_1:-7967612 | Msa1008060:three_prime_UTR |
| CGGGTATGATTTATGCGCGG+AGG | 0.656167 | 7_1:-7967165 | Msa1008060:three_prime_UTR |
| AAAGTGGCTGATGAAGGCTA+TGG | 0.656799 | 7_1:+7967544 | None:intergenic |
| CATTGTTGTAACAGTACCAG+GGG | 0.659317 | 7_1:+7968796 | None:intergenic |
| GATGCAGCACAGCACAAATG+TGG | 0.659452 | 7_1:-7967814 | Msa1008060:CDS |
| CAACCACCTACTACAGACAA+AGG | 0.663273 | 7_1:-7968761 | Msa1008060:intron |
| GCATTGTTGTAACAGTACCA+GGG | 0.672978 | 7_1:+7968795 | None:intergenic |
| AAACCTACTGAACATACCAA+GGG | 0.673080 | 7_1:+7967136 | None:intergenic |
| AAGATAAGGAGAATGTGCCA+AGG | 0.679109 | 7_1:-7968913 | Msa1008060:CDS |
| GAGTTTAATTAACGAATACG+AGG | 0.684836 | 7_1:+7970199 | None:intergenic |
| TACTGTTACAACAATGCATG+TGG | 0.701570 | 7_1:-7968789 | Msa1008060:CDS |
| ATAGATGTCACTGATCTGAG+TGG | 0.707851 | 7_1:+7970686 | None:intergenic |
| GCTCGGGTATGATTTATGCG+CGG | 0.718407 | 7_1:-7967168 | Msa1008060:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTTTTTTTTTTGTTT+TGG | + | chr7_1:7967171-7967190 | None:intergenic | 10.0% |
| !! | AAAAAAATCAAACAAAAAAT+TGG | + | chr7_1:7967407-7967426 | None:intergenic | 10.0% |
| !! | TACTGATAAAAAAATTAAAA+GGG | - | chr7_1:7968279-7968298 | Msa1008060:intron | 10.0% |
| !! | TCATATATCAAAAAAATAAA+AGG | + | chr7_1:7969022-7969041 | None:intergenic | 10.0% |
| !! | AAATAATAATAATTAGAACT+AGG | + | chr7_1:7969286-7969305 | None:intergenic | 10.0% |
| !! | ATAATGAATAAAAAAAACAA+GGG | + | chr7_1:7969486-7969505 | None:intergenic | 10.0% |
| !! | AATAATGAATAAAAAAAACA+AGG | + | chr7_1:7969487-7969506 | None:intergenic | 10.0% |
| !! | AAAAACAAATCAAAACTTTA+AGG | - | chr7_1:7967351-7967370 | Msa1008060:three_prime_UTR | 15.0% |
| !!! | AAAATCTAAAATTTTCAACT+GGG | + | chr7_1:7967437-7967456 | None:intergenic | 15.0% |
| !!! | AAAAATCTAAAATTTTCAAC+TGG | + | chr7_1:7967438-7967457 | None:intergenic | 15.0% |
| !! | CTACTGATAAAAAAATTAAA+AGG | - | chr7_1:7968278-7968297 | Msa1008060:intron | 15.0% |
| !! | ACTGATAAAAAAATTAAAAG+GGG | - | chr7_1:7968280-7968299 | Msa1008060:intron | 15.0% |
| !!! | ATTTTAGAAGATATATATTG+AGG | - | chr7_1:7968387-7968406 | Msa1008060:intron | 15.0% |
| !! | ATTCTAAATATCACATTAAA+TGG | + | chr7_1:7968557-7968576 | None:intergenic | 15.0% |
| !!! | GATAAATTATTCTTTTTCAA+AGG | - | chr7_1:7969331-7969350 | Msa1008060:intron | 15.0% |
| !!! | TTAATTTACTATAACTCTTT+TGG | + | chr7_1:7969870-7969889 | None:intergenic | 15.0% |
| !!! | AAATCATATACAATTTTCAT+AGG | - | chr7_1:7970408-7970427 | Msa1008060:intron | 15.0% |
| !! | AAAAAAAACAGAACAAAAAG+TGG | + | chr7_1:7967382-7967401 | None:intergenic | 20.0% |
| !!! | AACAGATCTAATTTTCAAAA+GGG | + | chr7_1:7967477-7967496 | None:intergenic | 20.0% |
| !!! | AAACAGATCTAATTTTCAAA+AGG | + | chr7_1:7967478-7967497 | None:intergenic | 20.0% |
| !!! | TTGAAAATTAGATCTGTTTT+AGG | - | chr7_1:7967479-7967498 | Msa1008060:three_prime_UTR | 20.0% |
| !!! | AATCATAGATATTTTTCAAG+AGG | + | chr7_1:7967624-7967643 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTACAAGTTTCT+TGG | - | chr7_1:7967884-7967903 | Msa1008060:intron | 20.0% |
| !!! | AAATCTATTTTGTTATTGCA+GGG | + | chr7_1:7968258-7968277 | None:intergenic | 20.0% |
| !! | AGTAATAACTACATACTAAA+AGG | + | chr7_1:7968431-7968450 | None:intergenic | 20.0% |
| !!! | ATTTTGATATTCTCTGTTAT+TGG | + | chr7_1:7968484-7968503 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAGCTGTTT+AGG | - | chr7_1:7968674-7968693 | Msa1008060:intron | 20.0% |
| !! | TAATAATTAGAACTAGGATT+TGG | + | chr7_1:7969280-7969299 | None:intergenic | 20.0% |
| !! | TGATTGACATATTAATTATG+AGG | - | chr7_1:7969421-7969440 | Msa1008060:intron | 20.0% |
| !!! | TTGATCTTTTGTTATTGAAA+TGG | - | chr7_1:7969801-7969820 | Msa1008060:intron | 20.0% |
| !! | ACTTTATCTCTATTATGAAA+CGG | - | chr7_1:7970652-7970671 | Msa1008060:five_prime_UTR | 20.0% |
| ! | TAAAAAATGGGAGAAAAGTA+AGG | + | chr7_1:7967109-7967128 | None:intergenic | 25.0% |
| ! | TTGTTAAAATCACGAGAATT+TGG | + | chr7_1:7967282-7967301 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTTTGTGAGT+TGG | + | chr7_1:7967334-7967353 | None:intergenic | 25.0% |
| !! | ATTTATCTGTTTTCCTATGT+TGG | - | chr7_1:7967648-7967667 | Msa1008060:three_prime_UTR | 25.0% |
| ! | CAAATCTGACATAGATAATT+TGG | + | chr7_1:7968113-7968132 | None:intergenic | 25.0% |
| !!! | AATCTATTTTGTTATTGCAG+GGG | + | chr7_1:7968257-7968276 | None:intergenic | 25.0% |
| !!! | GAAATCTATTTTGTTATTGC+AGG | + | chr7_1:7968259-7968278 | None:intergenic | 25.0% |
| !! | TCAGTTAAGAAAAGTATGTA+AGG | - | chr7_1:7968703-7968722 | Msa1008060:intron | 25.0% |
| !!! | GTTCGGTTTTTAAAACATTA+TGG | - | chr7_1:7968966-7968985 | Msa1008060:intron | 25.0% |
| !! | TTCAAATCTTTTATAGTCCT+TGG | + | chr7_1:7969099-7969118 | None:intergenic | 25.0% |
| ! | TTAATATGTCAATCAAGAAC+AGG | + | chr7_1:7969416-7969435 | None:intergenic | 25.0% |
| !!! | AGTTATACACATGTTTTGAT+TGG | - | chr7_1:7969610-7969629 | Msa1008060:intron | 25.0% |
| !!! | GCTTTTGAGAAACAATTTTT+TGG | - | chr7_1:7969660-7969679 | Msa1008060:intron | 25.0% |
| ! | GCTTTCTTATCTGTATAATA+AGG | + | chr7_1:7970151-7970170 | None:intergenic | 25.0% |
| !!! | TGTGTTATTTTATAGCATCA+AGG | - | chr7_1:7970202-7970221 | Msa1008060:five_prime_UTR | 25.0% |
| ! | TTCCTCATACACAAATTATT+CGG | - | chr7_1:7970311-7970330 | Msa1008060:intron | 25.0% |
| ! | TTTGGAAAATGATGATTTGA+GGG | - | chr7_1:7970690-7970709 | Msa1008060:five_prime_UTR | 25.0% |
| !!! | TGTTGGAACTTGTTATAATT+AGG | - | chr7_1:7970718-7970737 | Msa1008060:five_prime_UTR | 25.0% |
| !! | CTTGTTATAATTAGGTCATT+TGG | - | chr7_1:7970726-7970745 | Msa1008060:five_prime_UTR | 25.0% |
| ! | TTTGGAGATACATTACATTT+GGG | + | chr7_1:7970765-7970784 | None:intergenic | 25.0% |
| AGAAGAAAAAGAGAGAAAGT+TGG | + | chr7_1:7967224-7967243 | None:intergenic | 30.0% | |
| TTCTTCTTCATCTTCAATCT+AGG | - | chr7_1:7967246-7967265 | Msa1008060:three_prime_UTR | 30.0% | |
| !!! | GTTTTTTTGTATGCACTTGT+TGG | - | chr7_1:7967552-7967571 | Msa1008060:three_prime_UTR | 30.0% |
| GAGTTTAATTAACGAATACG+AGG | + | chr7_1:7967796-7967815 | None:intergenic | 30.0% | |
| CTCAATTGAAGTGATTTCAA+AGG | - | chr7_1:7967813-7967832 | Msa1008060:CDS | 30.0% | |
| ! | AACAGTTTGAGATCAAGTTT+AGG | - | chr7_1:7967933-7967952 | Msa1008060:intron | 30.0% |
| TTTCAATGTTGCAATACTAG+TGG | + | chr7_1:7968002-7968021 | None:intergenic | 30.0% | |
| !! | AAGAAAGTATTCTTGCTCAA+TGG | - | chr7_1:7968020-7968039 | Msa1008060:intron | 30.0% |
| ! | ACACAAAACAACTAACCTTT+TGG | + | chr7_1:7968046-7968065 | None:intergenic | 30.0% |
| TTAAGCTAAAAACCCGAAAA+GGG | + | chr7_1:7968087-7968106 | None:intergenic | 30.0% | |
| ATTAAGCTAAAAACCCGAAA+AGG | + | chr7_1:7968088-7968107 | None:intergenic | 30.0% | |
| ACAATGTTTCTTACAACAAC+GGG | + | chr7_1:7968157-7968176 | None:intergenic | 30.0% | |
| CACAATGTTTCTTACAACAA+CGG | + | chr7_1:7968158-7968177 | None:intergenic | 30.0% | |
| AAAAAATTAAAAGGGGCAGA+TGG | - | chr7_1:7968287-7968306 | Msa1008060:intron | 30.0% | |
| ! | TATGCTTCTAGAAGATATGT+TGG | - | chr7_1:7968607-7968626 | Msa1008060:intron | 30.0% |
| ! | GAAAAGTATGTAAGGTGATA+AGG | - | chr7_1:7968711-7968730 | Msa1008060:intron | 30.0% |
| TTAGGTTAAAGCTCTATTTG+AGG | + | chr7_1:7968737-7968756 | None:intergenic | 30.0% | |
| ! | AGAGCTTTAACCTAAAAATG+TGG | - | chr7_1:7968742-7968761 | Msa1008060:intron | 30.0% |
| ! | CTAGTGTTTTCCACATTTTT+AGG | + | chr7_1:7968755-7968774 | None:intergenic | 30.0% |
| CTAAAAATGTGGAAAACACT+AGG | - | chr7_1:7968753-7968772 | Msa1008060:intron | 30.0% | |
| AGAAACAAACTACTAAACGA+CGG | + | chr7_1:7968786-7968805 | None:intergenic | 30.0% | |
| CTAAAATAACTGAACAGTGA+AGG | + | chr7_1:7968867-7968886 | None:intergenic | 30.0% | |
| !!! | TTATTTTAGCAATTCGACCA+CGG | - | chr7_1:7968878-7968897 | Msa1008060:CDS | 30.0% |
| !!! | TGTGTTGTGTTTTGAAGATA+AGG | - | chr7_1:7969065-7969084 | Msa1008060:intron | 30.0% |
| AATCAGTGCAGGAAAAATAT+TGG | - | chr7_1:7969122-7969141 | Msa1008060:intron | 30.0% | |
| GTAAATTTAAGAGGCAAGTA+TGG | + | chr7_1:7970049-7970068 | None:intergenic | 30.0% | |
| AGAACAGCAGTAAATTTAAG+AGG | + | chr7_1:7970058-7970077 | None:intergenic | 30.0% | |
| AAATTTACTGCTGTTCTGTT+TGG | - | chr7_1:7970061-7970080 | Msa1008060:CDS | 30.0% | |
| TTGGATGTAGTAACAATATG+AGG | + | chr7_1:7970344-7970363 | None:intergenic | 30.0% | |
| ! | GAGAGTTCATTTTCATAAAG+TGG | + | chr7_1:7970467-7970486 | None:intergenic | 30.0% |
| ATCAGATACAGTACAACAAA+TGG | + | chr7_1:7970500-7970519 | None:intergenic | 30.0% | |
| !!! | CGGATGTCTTATTTTTTGTT+TGG | - | chr7_1:7970672-7970691 | Msa1008060:five_prime_UTR | 30.0% |
| GTTTGGAAAATGATGATTTG+AGG | - | chr7_1:7970689-7970708 | Msa1008060:five_prime_UTR | 30.0% | |
| !! | TAGGTCATTTGGTTCTTTAA+TGG | - | chr7_1:7970737-7970756 | Msa1008060:five_prime_UTR | 30.0% |
| GTTTGGAGATACATTACATT+TGG | + | chr7_1:7970766-7970785 | None:intergenic | 30.0% | |
| TAATGTATCTCCAAACACTT+GGG | - | chr7_1:7970770-7970789 | Msa1008060:five_prime_UTR | 30.0% | |
| ! | TATGAGACTAATCTTTTGCT+CGG | - | chr7_1:7970807-7970826 | Msa1008060:five_prime_UTR | 30.0% |
| TTAGATGAGAAACTCTGATT+TGG | - | chr7_1:7970877-7970896 | Msa1008060:five_prime_UTR | 30.0% | |
| ACTTGATCTCAAACTGTTCT+TGG | + | chr7_1:7967931-7967950 | None:intergenic | 35.0% | |
| !! | TGAGATCAAGTTTAGGTTGA+CGG | - | chr7_1:7967940-7967959 | Msa1008060:intron | 35.0% |
| ! | TTCTTTGTGCTTTCCCTTTT+CGG | - | chr7_1:7968071-7968090 | Msa1008060:intron | 35.0% |
| TAATAGATATAACTGCCACC+AGG | - | chr7_1:7968187-7968206 | Msa1008060:intron | 35.0% | |
| AATAGATATAACTGCCACCA+GGG | - | chr7_1:7968188-7968207 | Msa1008060:intron | 35.0% | |
| TGATGAGATCAGAGAAGAAA+AGG | - | chr7_1:7968516-7968535 | Msa1008060:intron | 35.0% | |
| ! | TATCTTCTAGAAGCATATGC+AGG | + | chr7_1:7968604-7968623 | None:intergenic | 35.0% |
| TGCCTTAAACCCCTTTATAT+CGG | + | chr7_1:7968911-7968930 | None:intergenic | 35.0% | |
| ! | GATTTGAAGTTAATCAGTGC+AGG | - | chr7_1:7969111-7969130 | Msa1008060:intron | 35.0% |
| TTGGAGAACAACAAAACAGT+CGG | - | chr7_1:7969141-7969160 | Msa1008060:intron | 35.0% | |
| TACTGTTACAACAATGCATG+TGG | - | chr7_1:7969203-7969222 | Msa1008060:intron | 35.0% | |
| ! | ATCCTTTAACTTAGCTGTCA+AGG | - | chr7_1:7969451-7969470 | Msa1008060:intron | 35.0% |
| TTCCTTGACAGCTAAGTTAA+AGG | + | chr7_1:7969456-7969475 | None:intergenic | 35.0% | |
| CGTTAGATTACTATTCTCTC+TGG | - | chr7_1:7969578-7969597 | Msa1008060:intron | 35.0% | |
| TGTTTCTCAAAAGCTTATGC+CGG | + | chr7_1:7969654-7969673 | None:intergenic | 35.0% | |
| ! | TTTCATAAGCGCTTTTGTAC+AGG | + | chr7_1:7969744-7969763 | None:intergenic | 35.0% |
| ACCATTAAATTTCACCAGCT+TGG | - | chr7_1:7969904-7969923 | Msa1008060:intron | 35.0% | |
| ! | ATGTCATCATCATTTTCCGT+AGG | - | chr7_1:7970236-7970255 | Msa1008060:intron | 35.0% |
| ! | TCATTTTCCGTAGGTGTTTA+CGG | - | chr7_1:7970245-7970264 | Msa1008060:intron | 35.0% |
| ! | CTTCGTTTTCACGTAATCTA+TGG | - | chr7_1:7970277-7970296 | Msa1008060:intron | 35.0% |
| ! | AGCCGAATAATTTGTGTATG+AGG | + | chr7_1:7970316-7970335 | None:intergenic | 35.0% |
| !!! | CATAGGAGTTGTTTTTCTTC+TGG | - | chr7_1:7970425-7970444 | Msa1008060:intron | 35.0% |
| TTTCATAAAGTGGCTGATGA+AGG | + | chr7_1:7970457-7970476 | None:intergenic | 35.0% | |
| GTAATGTATCTCCAAACACT+TGG | - | chr7_1:7970769-7970788 | Msa1008060:five_prime_UTR | 35.0% | |
| TTTCAAATGACCCAAGTGTT+TGG | + | chr7_1:7970783-7970802 | None:intergenic | 35.0% | |
| ! | ATGAGACTAATCTTTTGCTC+GGG | - | chr7_1:7970808-7970827 | Msa1008060:five_prime_UTR | 35.0% |
| AAACCTACTGAACATACCAA+GGG | + | chr7_1:7970859-7970878 | None:intergenic | 35.0% | |
| TAAACCTACTGAACATACCA+AGG | + | chr7_1:7970860-7970879 | None:intergenic | 35.0% | |
| GGGAGAAAAGTAAGGAAAGA+GGG | + | chr7_1:7967101-7967120 | None:intergenic | 40.0% | |
| TGGGAGAAAAGTAAGGAAAG+AGG | + | chr7_1:7967102-7967121 | None:intergenic | 40.0% | |
| ATAGATGTCACTGATCTGAG+TGG | + | chr7_1:7967309-7967328 | None:intergenic | 40.0% | |
| CATCATGCAGAATCCAACAT+AGG | + | chr7_1:7967664-7967683 | None:intergenic | 40.0% | |
| !! | ATCAAGTTTAGGTTGACGGA+TGG | - | chr7_1:7967944-7967963 | Msa1008060:intron | 40.0% |
| !! | TTGACGGATGGTTCTGATAT+CGG | - | chr7_1:7967956-7967975 | Msa1008060:intron | 40.0% |
| CAATGTTGCAATACTAGTGG+CGG | + | chr7_1:7967999-7968018 | None:intergenic | 40.0% | |
| ATTCTTGCTCAATGGCCAAA+AGG | - | chr7_1:7968028-7968047 | Msa1008060:intron | 40.0% | |
| ! | TCTTTGTGCTTTCCCTTTTC+GGG | - | chr7_1:7968072-7968091 | Msa1008060:intron | 40.0% |
| ! | GATTGGATGGATTCGAAAAC+CGG | - | chr7_1:7968313-7968332 | Msa1008060:intron | 40.0% |
| ! | ATTGGATGGATTCGAAAACC+GGG | - | chr7_1:7968314-7968333 | Msa1008060:intron | 40.0% |
| TGGAGCAAGAGTTACATCTA+CGG | + | chr7_1:7968464-7968483 | None:intergenic | 40.0% | |
| TTTATATCGGGACAAAACCG+TGG | + | chr7_1:7968898-7968917 | None:intergenic | 40.0% | |
| !! | ACGGTTTTGTCCCGATATAA+AGG | - | chr7_1:7968897-7968916 | Msa1008060:CDS | 40.0% |
| !! | CGGTTTTGTCCCGATATAAA+GGG | - | chr7_1:7968898-7968917 | Msa1008060:CDS | 40.0% |
| !! | GGTTTTGTCCCGATATAAAG+GGG | - | chr7_1:7968899-7968918 | Msa1008060:CDS | 40.0% |
| TCCCGATATAAAGGGGTTTA+AGG | - | chr7_1:7968906-7968925 | Msa1008060:CDS | 40.0% | |
| GCCTTAAACCCCTTTATATC+GGG | + | chr7_1:7968910-7968929 | None:intergenic | 40.0% | |
| TCAGCAAGACTTCTGGATTA+TGG | + | chr7_1:7968940-7968959 | None:intergenic | 40.0% | |
| !! | AGTCTTGCTGATTCGTTGTT+CGG | - | chr7_1:7968949-7968968 | Msa1008060:intron | 40.0% |
| AAGATAAGGAGAATGTGCCA+AGG | - | chr7_1:7969079-7969098 | Msa1008060:intron | 40.0% | |
| !! | TACCAGGGGTATCACATAAA+GGG | + | chr7_1:7969185-7969204 | None:intergenic | 40.0% |
| CATTGTTGTAACAGTACCAG+GGG | + | chr7_1:7969199-7969218 | None:intergenic | 40.0% | |
| GCATTGTTGTAACAGTACCA+GGG | + | chr7_1:7969200-7969219 | None:intergenic | 40.0% | |
| TGCATTGTTGTAACAGTACC+AGG | + | chr7_1:7969201-7969220 | None:intergenic | 40.0% | |
| ATCAGACCTTTGTCTGTAGT+AGG | + | chr7_1:7969240-7969259 | None:intergenic | 40.0% | |
| GCACATTTGAGCTTATCTAC+CGG | - | chr7_1:7969632-7969651 | Msa1008060:intron | 40.0% | |
| GCCAAGCTGGTGAAATTTAA+TGG | + | chr7_1:7969908-7969927 | None:intergenic | 40.0% | |
| ATATACTGCATATGCCAAGC+TGG | + | chr7_1:7969921-7969940 | None:intergenic | 40.0% | |
| TCATCCGACACATATTGACA+TGG | - | chr7_1:7970114-7970133 | Msa1008060:five_prime_UTR | 40.0% | |
| TCCACCATGTCAATATGTGT+CGG | + | chr7_1:7970121-7970140 | None:intergenic | 40.0% | |
| TCTCTAACCGTAAACACCTA+CGG | + | chr7_1:7970255-7970274 | None:intergenic | 40.0% | |
| !! | CATCCAAAGAGTACTTGTCT+TGG | - | chr7_1:7970357-7970376 | Msa1008060:intron | 40.0% |
| !! | CAAAGAGTACTTGTCTTGGT+GGG | - | chr7_1:7970361-7970380 | Msa1008060:intron | 40.0% |
| !! | AAAGAGTACTTGTCTTGGTG+GGG | - | chr7_1:7970362-7970381 | Msa1008060:intron | 40.0% |
| TGGGGATATTGTGAATCTAG+TGG | - | chr7_1:7970380-7970399 | Msa1008060:intron | 40.0% | |
| GTCTACAAACATTTCGCATC+AGG | + | chr7_1:7970556-7970575 | None:intergenic | 40.0% | |
| ATGATTTGAGGGTTGTGTGT+TGG | - | chr7_1:7970701-7970720 | Msa1008060:five_prime_UTR | 40.0% | |
| !! | GATGAGAAACTCTGATTTGG+TGG | - | chr7_1:7970880-7970899 | Msa1008060:five_prime_UTR | 40.0% |
| CTCAAACTGTTCTTGGTTCC+CGG | + | chr7_1:7967924-7967943 | None:intergenic | 45.0% | |
| AAAGGGGCAGATGGTTTGAT+TGG | - | chr7_1:7968296-7968315 | Msa1008060:intron | 45.0% | |
| CATGATCATTCGAGGCTTCT+GGG | - | chr7_1:7968349-7968368 | Msa1008060:intron | 45.0% | |
| GGCTTCTGGGTTTGATGTAT+TGG | - | chr7_1:7968362-7968381 | Msa1008060:intron | 45.0% | |
| TTCCTTACTGTCCTGCTTGA+CGG | - | chr7_1:7968816-7968835 | Msa1008060:CDS | 45.0% | |
| ! | AGGCTGATTCAAGGTTCAAC+CGG | + | chr7_1:7968847-7968866 | None:intergenic | 45.0% |
| ! | GAACAGTGAAGGCTGATTCA+AGG | + | chr7_1:7968856-7968875 | None:intergenic | 45.0% |
| CAACGAATCAGCAAGACTTC+TGG | + | chr7_1:7968947-7968966 | None:intergenic | 45.0% | |
| GGGTATCACATAAAGGGCTT+TGG | + | chr7_1:7969179-7969198 | None:intergenic | 45.0% | |
| !! | GTACCAGGGGTATCACATAA+AGG | + | chr7_1:7969186-7969205 | None:intergenic | 45.0% |
| CAACCACCTACTACAGACAA+AGG | - | chr7_1:7969231-7969250 | Msa1008060:intron | 45.0% | |
| AGACCTTTGTCTGTAGTAGG+TGG | + | chr7_1:7969237-7969256 | None:intergenic | 45.0% | |
| TTACAGTCCTAGCTTCACAG+AGG | + | chr7_1:7969546-7969565 | None:intergenic | 45.0% | |
| TCCGACACATATTGACATGG+TGG | - | chr7_1:7970117-7970136 | Msa1008060:five_prime_UTR | 45.0% | |
| CCACCAAGACAAGTACTCTT+TGG | + | chr7_1:7970363-7970382 | None:intergenic | 45.0% | |
| !! | CCAAAGAGTACTTGTCTTGG+TGG | - | chr7_1:7970360-7970379 | Msa1008060:intron | 45.0% |
| AAAGTGGCTGATGAAGGCTA+TGG | + | chr7_1:7970451-7970470 | None:intergenic | 45.0% | |
| TGACCCTTGGTATGTTCAGT+AGG | - | chr7_1:7970853-7970872 | Msa1008060:five_prime_UTR | 45.0% | |
| !! | ATTATTGATATATAAAAAAT+GGG | + | chr7_1:7967121-7967140 | None:intergenic | 5.0% |
| !! | AATTATTGATATATAAAAAA+TGG | + | chr7_1:7967122-7967141 | None:intergenic | 5.0% |
| !!! | AAATAAATTGAAAAATTTTA+TGG | + | chr7_1:7969715-7969734 | None:intergenic | 5.0% |
| ! | TGGCGGCAGGAAAACTTTTG+GGG | + | chr7_1:7967982-7968001 | None:intergenic | 50.0% |
| ! | GTGGCGGCAGGAAAACTTTT+GGG | + | chr7_1:7967983-7968002 | None:intergenic | 50.0% |
| ! | AGTGGCGGCAGGAAAACTTT+TGG | + | chr7_1:7967984-7968003 | None:intergenic | 50.0% |
| GGGCAGATGGTTTGATTGGA+TGG | - | chr7_1:7968300-7968319 | Msa1008060:intron | 50.0% | |
| GCATGATCATTCGAGGCTTC+TGG | - | chr7_1:7968348-7968367 | Msa1008060:intron | 50.0% | |
| AACCGTCAAGCAGGACAGTA+AGG | + | chr7_1:7968821-7968840 | None:intergenic | 50.0% | |
| ! | CACATAAAGGGCTTTGGCTC+TGG | + | chr7_1:7969173-7969192 | None:intergenic | 50.0% |
| AGCCCTTTATGTGATACCCC+TGG | - | chr7_1:7969180-7969199 | Msa1008060:intron | 50.0% | |
| GTAGTCTCCTCTGTGAAGCT+AGG | - | chr7_1:7969536-7969555 | Msa1008060:intron | 50.0% | |
| GATGCAGCACAGCACAAATG+TGG | - | chr7_1:7970178-7970197 | Msa1008060:five_prime_UTR | 50.0% | |
| GCTCGGGTATGATTTATGCG+CGG | - | chr7_1:7970824-7970843 | Msa1008060:five_prime_UTR | 50.0% | |
| CTTGGATCTCCGAGCATGAC+CGG | - | chr7_1:7967902-7967921 | Msa1008060:intron | 55.0% | |
| TTGGATCTCCGAGCATGACC+GGG | - | chr7_1:7967903-7967922 | Msa1008060:intron | 55.0% | |
| TCTTGGTTCCCGGTCATGCT+CGG | + | chr7_1:7967914-7967933 | None:intergenic | 55.0% | |
| GTTGCAATACTAGTGGCGGC+AGG | + | chr7_1:7967995-7968014 | None:intergenic | 55.0% | |
| TTCGAAAACCGGGTGATCGC+AGG | - | chr7_1:7968324-7968343 | Msa1008060:intron | 55.0% | |
| ATCATGCACCTGCGATCACC+CGG | + | chr7_1:7968335-7968354 | None:intergenic | 55.0% | |
| CGCAGGTGCATGATCATTCG+AGG | - | chr7_1:7968341-7968360 | Msa1008060:intron | 55.0% | |
| GTCCTGCTTGACGGTTCAAC+CGG | - | chr7_1:7968825-7968844 | Msa1008060:CDS | 55.0% | |
| AACCGGTTGAACCGTCAAGC+AGG | + | chr7_1:7968830-7968849 | None:intergenic | 55.0% | |
| CGGGTATGATTTATGCGCGG+AGG | - | chr7_1:7970827-7970846 | Msa1008060:five_prime_UTR | 55.0% | |
| CAACCACTTGCGCTAGACCC+TGG | + | chr7_1:7968208-7968227 | None:intergenic | 60.0% | |
| CAGGGTCTAGCGCAAGTGGT+TGG | - | chr7_1:7968206-7968225 | Msa1008060:intron | 60.0% | |
| CCACTTGCGCTAGACCCTGG+TGG | + | chr7_1:7968205-7968224 | None:intergenic | 65.0% | |
| CCACCAGGGTCTAGCGCAAG+TGG | - | chr7_1:7968202-7968221 | Msa1008060:intron | 65.0% | |
| AGCGCAAGTGGTTGGCGCTC+AGG | - | chr7_1:7968214-7968233 | Msa1008060:intron | 65.0% | |
| GCGCAAGTGGTTGGCGCTCA+GGG | - | chr7_1:7968215-7968234 | Msa1008060:intron | 65.0% | |
| CGCAAGTGGTTGGCGCTCAG+GGG | - | chr7_1:7968216-7968235 | Msa1008060:intron | 65.0% | |
| ! | GGCGCTCAGGGGTGTGAGTG+TGG | - | chr7_1:7968227-7968246 | Msa1008060:intron | 70.0% |
| TGCGCGGAGGCAGTGACCCT+TGG | - | chr7_1:7970840-7970859 | Msa1008060:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 7967094 | 7970920 | 7967094 | ID=Msa1008060;Name=Msa1008060 |
| chr7_1 | mRNA | 7967094 | 7970920 | 7967094 | ID=Msa1008060-mRNA-1;Parent=Msa1008060;Name=Msa1008060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=432|1|1|1|0.33|0|4|704|119 |
| chr7_1 | exon | 7967094 | 7967853 | 7967094 | ID=Msa1008060-mRNA-1:exon:2376;Parent=Msa1008060-mRNA-1 |
| chr7_1 | exon | 7968762 | 7968932 | 7968762 | ID=Msa1008060-mRNA-1:exon:2375;Parent=Msa1008060-mRNA-1 |
| chr7_1 | exon | 7969965 | 7970250 | 7969965 | ID=Msa1008060-mRNA-1:exon:2374;Parent=Msa1008060-mRNA-1 |
| chr7_1 | exon | 7970642 | 7970920 | 7970642 | ID=Msa1008060-mRNA-1:exon:2373;Parent=Msa1008060-mRNA-1 |
| chr7_1 | five_prime_UTR | 7970642 | 7970920 | 7970642 | ID=Msa1008060-mRNA-1:five_prime_utr;Parent=Msa1008060-mRNA-1 |
| chr7_1 | five_prime_UTR | 7970098 | 7970250 | 7970098 | ID=Msa1008060-mRNA-1:five_prime_utr;Parent=Msa1008060-mRNA-1 |
| chr7_1 | CDS | 7969965 | 7970097 | 7969965 | ID=Msa1008060-mRNA-1:cds;Parent=Msa1008060-mRNA-1 |
| chr7_1 | CDS | 7968762 | 7968932 | 7968762 | ID=Msa1008060-mRNA-1:cds;Parent=Msa1008060-mRNA-1 |
| chr7_1 | CDS | 7967798 | 7967853 | 7967798 | ID=Msa1008060-mRNA-1:cds;Parent=Msa1008060-mRNA-1 |
| chr7_1 | three_prime_UTR | 7967094 | 7967797 | 7967094 | ID=Msa1008060-mRNA-1:three_prime_utr;Parent=Msa1008060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
