AlfalfaGEDB | Msa1397270

M. sativa cultivar zhongmu-4 / Msa1397270

KEGG: K11136
GO: GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020
PFAM: PF06733.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397270	XP_003597775.2	80.665	962	92	10	1	868	1	962	0.0	1519

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397270	sp\|F4HQE2\|RTEL1_ARATH	52.848	948	361	17	1	867	46	988	0.0	954

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397270	G7II45	80.665	962	92	10	1	868	1	962	0.0	1519

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1397270	0.824618	7.322888e-54	-8.615850e-47
Msa0016040	Msa1397270	0.826398	2.773577e-54	-8.615850e-47
Msa0020540	Msa1397270	0.815449	9.193408e-52	-8.615850e-47
Msa0038940	Msa1397270	0.812053	5.144110e-51	-8.615850e-47
Msa0048510	Msa1397270	0.837769	4.275137e-57	-8.615850e-47
Msa0053070	Msa1397270	0.839719	1.338916e-57	-8.615850e-47
Msa0062340	Msa1397270	0.819671	1.027682e-52	-8.615850e-47
Msa0065020	Msa1397270	0.819954	8.853963e-53	-8.615850e-47
Msa0075530	Msa1397270	0.816083	6.638367e-52	-8.615850e-47
Msa0077340	Msa1397270	0.805573	1.250556e-49	-8.615850e-47

Showing 1 to 10 of 201 entries

Previous1 2 3 4 5…21Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397270	MtrunA17_Chr2g0331891	80.582	963	92	11	1	868	1	963	0.0	1514
Msa1397270	MtrunA17_Chr1g0157441	33.894	773	409	22	4	700	17	763	6.98e-111	368
Msa1397270	MtrunA17_Chr4g0004621	32.249	338	173	10	410	699	575	904	4.99e-42	166
Msa1397270	MtrunA17_Chr4g0004621	31.844	179	83	3	97	241	199	372	1.31e-18	91.3
Msa1397270	MtrunA17_Chr2g0320831	28.920	287	188	6	392	678	432	702	3.96e-31	131

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1397270	AT1G79950.6	53.262	935	359	16	1	867	46	970	0.0	959
Msa1397270	AT1G79950.1	52.848	948	361	17	1	867	46	988	0.0	954
Msa1397270	AT1G79950.7	59.686	764	273	8	1	733	46	805	0.0	932
Msa1397270	AT1G79950.3	59.686	764	273	8	1	733	46	805	0.0	932
Msa1397270	AT1G79950.2	59.686	764	273	8	1	733	46	805	0.0	932
Msa1397270	AT1G79950.5	60.834	743	257	8	1	712	46	785	0.0	931
Msa1397270	AT1G79950.4	60.834	743	257	8	1	712	46	785	0.0	931
Msa1397270	AT1G20720.1	34.351	786	412	22	4	705	27	792	4.63e-125	406
Msa1397270	AT1G20720.2	34.351	786	412	22	4	705	27	792	2.83e-124	406
Msa1397270	AT1G20750.1	33.792	799	400	25	4	737	27	761	1.93e-106	355

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 226 sgRNAs with CRISPR-Local

Find 711 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGTTCATGTGAAGG+AGG	0.624454	tig0022138:-97203	Msa1397270:intron
AAAACCTGTAATAGAACCTA+GGG	0.570641	tig0022138:-95220	Msa1397270:CDS
AAAACTACCTATAGAACCAT+TGG	0.530664	tig0022138:+97165	None:intergenic
AAAATGGATATAAATGACCA+AGG	0.657728	tig0022138:+89659	None:intergenic
AAACATAGTCCATCAACACA+TGG	0.677107	tig0022138:-89443	Msa1397270:three_prime_UTR
AAATAATTGCTCCATAGTCA+TGG	0.594023	tig0022138:+94140	None:intergenic
AAATTTGACTCGAATTGTTC+CGG	0.359310	tig0022138:-95428	Msa1397270:CDS
AACAATCTGGGGCACAAGGA+GGG	0.570620	tig0022138:-94340	Msa1397270:CDS
AACAGCTTGATTCACAGCTC+TGG	0.449253	tig0022138:+94183	None:intergenic
AACCTTAGGATCAGTGACTG+TGG	0.684557	tig0022138:+94588	None:intergenic

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTAACTATAAGCTATTACG+AGG	-	tig0022138:89936-89955	Msa1397270:intron	30.0%
TATGGAAATAAGTTGCAAAC+AGG	-	tig0022138:90187-90206	Msa1397270:intron	30.0%
TACAATAGTAGGAAACTTTG+AGG	+	tig0022138:90574-90593	None:intergenic	30.0%
TTTCTTCAGCTTAGTGATTA+TGG	-	tig0022138:90855-90874	Msa1397270:intron	30.0%
TATGGTGATATAAGTGTTTC+GGG	-	tig0022138:90957-90976	Msa1397270:intron	30.0%
GTAACCTATATTGTATGCAA+AGG	+	tig0022138:91190-91209	None:intergenic	30.0%
TTGCATACAATATAGGTTAC+TGG	-	tig0022138:91190-91209	Msa1397270:intron	30.0%
ATATTATATCAACAGCCTTG+TGG	+	tig0022138:91770-91789	None:intergenic	30.0%
CGATCAATAAGATAGTTGTA+TGG	+	tig0022138:91798-91817	None:intergenic	30.0%
TACAACTATCTTATTGATCG+AGG	-	tig0022138:91798-91817	Msa1397270:CDS	30.0%

Showing 1 to 10 of 711 entries

Previous1 2 3 4 5…72Next

Chromosome	Type	Strat	End	Strand	Name
tig0022138	gene	89391	100775	89391	ID=Msa1397270;Name=Msa1397270
tig0022138	mRNA	89391	100775	89391	ID=Msa1397270-mRNA-1;Parent=Msa1397270;Name=Msa1397270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=153\|0.78\|0.75\|1\|0.73\|0.75\|24\|366\|888
tig0022138	exon	89391	89477	89391	ID=Msa1397270-mRNA-1:exon:15961;Parent=Msa1397270-mRNA-1
tig0022138	exon	89506	89847	89506	ID=Msa1397270-mRNA-1:exon:15960;Parent=Msa1397270-mRNA-1
tig0022138	exon	91001	91087	91001	ID=Msa1397270-mRNA-1:exon:15959;Parent=Msa1397270-mRNA-1
tig0022138	exon	91426	91580	91426	ID=Msa1397270-mRNA-1:exon:15958;Parent=Msa1397270-mRNA-1
tig0022138	exon	91661	91882	91661	ID=Msa1397270-mRNA-1:exon:15957;Parent=Msa1397270-mRNA-1
tig0022138	exon	93367	93472	93367	ID=Msa1397270-mRNA-1:exon:15956;Parent=Msa1397270-mRNA-1
tig0022138	exon	93543	93600	93543	ID=Msa1397270-mRNA-1:exon:15955;Parent=Msa1397270-mRNA-1
tig0022138	exon	94127	94242	94127	ID=Msa1397270-mRNA-1:exon:15954;Parent=Msa1397270-mRNA-1
tig0022138	exon	94331	94390	94331	ID=Msa1397270-mRNA-1:exon:15953;Parent=Msa1397270-mRNA-1
tig0022138	exon	94591	94677	94591	ID=Msa1397270-mRNA-1:exon:15952;Parent=Msa1397270-mRNA-1
tig0022138	exon	95028	95096	95028	ID=Msa1397270-mRNA-1:exon:15951;Parent=Msa1397270-mRNA-1
tig0022138	exon	95191	95286	95191	ID=Msa1397270-mRNA-1:exon:15950;Parent=Msa1397270-mRNA-1
tig0022138	exon	95360	95451	95360	ID=Msa1397270-mRNA-1:exon:15949;Parent=Msa1397270-mRNA-1
tig0022138	exon	96158	96312	96158	ID=Msa1397270-mRNA-1:exon:15948;Parent=Msa1397270-mRNA-1
tig0022138	exon	96404	96545	96404	ID=Msa1397270-mRNA-1:exon:15947;Parent=Msa1397270-mRNA-1
tig0022138	exon	97173	97218	97173	ID=Msa1397270-mRNA-1:exon:15946;Parent=Msa1397270-mRNA-1
tig0022138	exon	97361	97609	97361	ID=Msa1397270-mRNA-1:exon:15945;Parent=Msa1397270-mRNA-1
tig0022138	exon	97898	97957	97898	ID=Msa1397270-mRNA-1:exon:15944;Parent=Msa1397270-mRNA-1
tig0022138	exon	97974	98054	97974	ID=Msa1397270-mRNA-1:exon:15943;Parent=Msa1397270-mRNA-1
tig0022138	exon	98279	98426	98279	ID=Msa1397270-mRNA-1:exon:15942;Parent=Msa1397270-mRNA-1
tig0022138	exon	98526	98607	98526	ID=Msa1397270-mRNA-1:exon:15941;Parent=Msa1397270-mRNA-1
tig0022138	exon	99000	99154	99000	ID=Msa1397270-mRNA-1:exon:15940;Parent=Msa1397270-mRNA-1
tig0022138	exon	99529	99764	99529	ID=Msa1397270-mRNA-1:exon:15939;Parent=Msa1397270-mRNA-1
tig0022138	exon	100521	100775	100521	ID=Msa1397270-mRNA-1:exon:15938;Parent=Msa1397270-mRNA-1
tig0022138	five_prime_UTR	100623	100775	100623	ID=Msa1397270-mRNA-1:five_prime_utr;Parent=Msa1397270-mRNA-1
tig0022138	CDS	100521	100622	100521	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	99529	99764	99529	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	99000	99154	99000	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	98526	98607	98526	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	98279	98426	98279	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	97974	98054	97974	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	97898	97957	97898	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	97361	97609	97361	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	97173	97218	97173	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	96404	96545	96404	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	96158	96312	96158	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	95360	95451	95360	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	95191	95286	95191	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	95028	95096	95028	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	94591	94677	94591	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	94331	94390	94331	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	94127	94242	94127	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	93543	93600	93543	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	93367	93472	93367	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	91661	91882	91661	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	91426	91580	91426	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	91001	91087	91001	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	CDS	89785	89847	89785	ID=Msa1397270-mRNA-1:cds;Parent=Msa1397270-mRNA-1
tig0022138	three_prime_UTR	89506	89784	89506	ID=Msa1397270-mRNA-1:three_prime_utr;Parent=Msa1397270-mRNA-1
tig0022138	three_prime_UTR	89391	89477	89391	ID=Msa1397270-mRNA-1:three_prime_utr;Parent=Msa1397270-mRNA-1

Gene Sequence

>Msa1397270

ATGCCGACGTACAAGATCAGAGGAATCGACGTTGATTTTCCTTATGAAGCCTATGATTCCCAGCTTGTTTACATGGACAAAGTCGTGCAATCGCTTCAAGAGGAATCTAATGCACTGTTGGAGAGTCCCACAGGAACTGGTAAAACACTATGTCTTCTATGTGCTACTTTAGCCTGGCGGAAGAGTTTGGGCAGTTTCTCAACTGGTATGAGCATAAAAACCGGTGATAACGGTAAAACTGAGGTTTCATCGTCACAGTCAGAGCCTGGGGCCTCAAAGTTTCCTACTATTGTATATGCTTCACGCACCCACAGTCAGATACGTCAAGTAATTCAAGAACCTAAAATGACCGTTCTGGGTTCTCGTGAACAATTTTGCATTCACGATGAAGTGAAGTTACTTCGTGGAAGAACACAAACAAATGCTTGTCGATTTGCCTGTCGAAGGCGTGCGAAGCAAAAGCGTCGATGTAATCATTTCAATCAAGTTCTTGACTATTTGAAGCAAAATCCCAATCTTGGAGAAGAGCCTATGGATATCGAGGATTTGGTCAATATTGGCAAAACATCCGGGCCGTGTCCTTATCATTTAGCAAAGGAGCTCCACAAGGCTGTTGATATAATATTCGCTCCATACAACTATCTTATTGATCGAGGGAAAAGAAAGGCTCTGCAAATTTCTTGGAGCAATAGTATACTCATATTTGACGAAGCTCACAACCTGGAAAGCATATGTGCTGACGCAGCCTCCTTTGACCTGCCTTCTTGGCTTCTAACAGCTTGCATTTCTGAGGCTCAAAGTTGTAAAGAAGAAATAAATCAAATGACAAGTCACAAAATCCAGATGATTTTGCTATCCTTAAAGGTGCATATTGAATCCAAGGAGTTGGGGTTCACCAAACCTGGGCCTTATATTTTTGAACTGCTGGCTGATCTTAATATCACACACAAGACTGCTCCCAAGCTTAAGAGTATCGTCACTGATGCTTCAACTCTCCTCGAAGAAGATAGTCAGGAGAAATCAACTAGCAACATCTGCAGATTGGAAACTATGAAGGATATTCTTGACATCATTTTCAGGGATGGAAGAACGTCTCATGCTAAATACTATCGTGTTCATGTGAAGGAGGCTGAGGCTTGGGCTGCCAATGGTTCTATAGGCAAGGTGTCAAGGACACTCAGCTGGTGGTGCTTTAATCCAGGAATAGCTTTGGAAGAATTTGCCAAGGATGGGGTTAGATCAATTATATTGACATCAGGCACATTATCTCCTTTAGACTCTTTTGCCGAGGAACTGAAATTAGACTTCCCCATTCGGTTGGAAAATCCACATGTAATAGGCCCAAATCAGATATGGGCTGGAGTTGTACCTGTTGGTCCTTTAGGGCGTACTTTTAACTCCTCTTACCGCACTCGTGATACGATGGAGTACAAGCAGGAGCTTGGAAATGCAATCGTAAATTTGACTCGAATTGTTCCGGATGGACTTCTTGTATTCTTCCCATCTTATTACCTTTTGGAGCAAAGCATTGGGTGCTGGAAAAGCTTGAGTAATGATAATTCATCAATATGGGAGAGGATTTGCAAAAACAAAAAACCTGTAATAGAACCTAGGGAATCTTCAATGTTTACCTCATCAATTAAGGACTACTTAACTAAACTGAACGATACCACTGCATCTGGAGCTGTCTTCTTTGCTGTTTGTCGTGGGAAGGTTAGCGAAGGATTAGATTTTGCAGATCATGCAGGTAGAGCTGTGGTAGTTACTGGTTTGCCTTATGCCACAGTCACTGATCCTAAGGTTCGTTTAAAACGTGAGTACTTGGATCAACAATCTGGGGCACAAGGAGGGTCGTTCAAGGTTTTAACTGGAGATGAGTGGTATAACCAACAAGCCTCCAGAGCTGTGAATCAAGCTGTTGGACGTGTAATTCGCCATCGCCATGACTATGGAGCAATTATTTTCTGCGATGAAAGGTTTACACAACCTCATCGCCAATCCCAAGTCTCAAAATGGATACAGCCTCACATCAAGTGTTACTCAAGATTTGGAGAAGTTGTTTTTACTCTGACTCGATTTTTTCGAGATGGACGAACTCGAGGTGCTACAAAGCTGTCATTATTAGAAGCTGAAAATGGTGGTAGTGAAAGTTCAAGTGATACACGCGAGGTAGTTTTGCATAAAAGGAGGACTGTGCTGTCGCAAGAACATGGCGGGTTTGATTTGGCTGGTAGTTCTCAACTGGGTGAAAAATCAAAGAATATGCTGATAGCACCTTGTATCACCAAGAAGCGTAGATTTATAGCAGGAGAGTATGACCTAAAGCAACATATTGGAAATTCTAATGAGCAATCATCGTCAGCTAGTCAAAATGCTCAAGGTGATGTAGATCTGCAATGTAAAGATAACGTGACCTCTCAAAGTAGAAATCTTGAGTTTCTTAGACAAAAAGACAATCTTCCTGCTGATTCAGCACCTACTTCTGATGGAACCCAAGGATCAGCATTCCTTGCTCAGGTCCGAGATAAACTCAGTGCTGCAGAATATATAGACTTTGTGGGTTACATGAAAGCGCTCAAGACCAAAACATTGAAGATTAGCGAATGCCACCCAAAGCATATGTTGGAAAGCGTCATCTGGAGAATTAATATTGACCTTGCGACTTGA

Protein sequence

>Msa1397270

MPTYKIRGIDVDFPYEAYDSQLVYMDKVVQSLQEESNALLESPTGTGKTLCLLCATLAWRKSLGSFSTGMSIKTGDNGKTEVSSSQSEPGASKFPTIVYASRTHSQIRQVIQEPKMTVLGSREQFCIHDEVKLLRGRTQTNACRFACRRRAKQKRRCNHFNQVLDYLKQNPNLGEEPMDIEDLVNIGKTSGPCPYHLAKELHKAVDIIFAPYNYLIDRGKRKALQISWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAQSCKEEINQMTSHKIQMILLSLKVHIESKELGFTKPGPYIFELLADLNITHKTAPKLKSIVTDASTLLEEDSQEKSTSNICRLETMKDILDIIFRDGRTSHAKYYRVHVKEAEAWAANGSIGKVSRTLSWWCFNPGIALEEFAKDGVRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGPNQIWAGVVPVGPLGRTFNSSYRTRDTMEYKQELGNAIVNLTRIVPDGLLVFFPSYYLLEQSIGCWKSLSNDNSSIWERICKNKKPVIEPRESSMFTSSIKDYLTKLNDTTASGAVFFAVCRGKVSEGLDFADHAGRAVVVTGLPYATVTDPKVRLKREYLDQQSGAQGGSFKVLTGDEWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFTQPHRQSQVSKWIQPHIKCYSRFGEVVFTLTRFFRDGRTRGATKLSLLEAENGGSESSSDTREVVLHKRRTVLSQEHGGFDLAGSSQLGEKSKNMLIAPCITKKRRFIAGEYDLKQHIGNSNEQSSSASQNAQGDVDLQCKDNVTSQSRNLEFLRQKDNLPADSAPTSDGTQGSAFLAQVRDKLSAAEYIDFVGYMKALKTKTLKISECHPKHMLESVIWRINIDLAT*