AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842220 MtrunA17_Chr5g0412111 96.154 468 15 2 1 467 1 466 0.0 933
Msa0842220 MtrunA17_Chr5g0412101 76.282 468 106 2 3 467 10 475 0.0 741
Msa0842220 MtrunA17_Chr5g0412131 77.302 467 100 3 4 467 11 474 0.0 738
Msa0842220 MtrunA17_Chr5g0426431 37.577 487 254 13 5 462 12 477 5.37e-93 290
Msa0842220 MtrunA17_Chr6g0454261 33.610 482 286 10 4 462 9 479 7.43e-92 287
Msa0842220 MtrunA17_Chr3g0092641 36.831 486 261 14 4 462 11 477 9.99e-92 286
Msa0842220 MtrunA17_Chr6g0454141 33.895 475 294 8 4 462 9 479 8.63e-91 284
Msa0842220 MtrunA17_Chr6g0454401 33.750 480 293 9 2 462 7 480 1.44e-89 281
Msa0842220 MtrunA17_Chr6g0454331 33.542 480 291 10 4 462 6 478 1.62e-89 281
Msa0842220 MtrunA17_Chr6g0454191 35.625 480 280 12 4 462 9 480 3.05e-89 280
Msa0842220 MtrunA17_Chr6g0453961 33.678 484 284 12 4 462 18 489 5.62e-89 280
Msa0842220 MtrunA17_Chr7g0217881 35.232 474 271 8 4 462 9 461 9.03e-89 278
Msa0842220 MtrunA17_Chr6g0454121 35.714 476 279 11 4 460 9 476 9.67e-89 279
Msa0842220 MtrunA17_Chr3g0118691 35.343 481 281 13 2 462 12 482 4.46e-87 275
Msa0842220 MtrunA17_Chr6g0454301 36.000 475 282 12 4 462 262 730 8.58e-87 281
Msa0842220 MtrunA17_Chr6g0454301 42.544 228 125 3 237 460 2 227 9.29e-53 189
Msa0842220 MtrunA17_Chr2g0278711 36.632 475 277 13 4 462 10 476 9.04e-87 274
Msa0842220 MtrunA17_Chr8g0359821 33.610 482 284 13 4 462 9 477 1.79e-86 273
Msa0842220 MtrunA17_Chr6g0454291 34.440 482 282 10 4 462 6 476 2.41e-86 273
Msa0842220 MtrunA17_Chr6g0453951 34.232 482 283 13 4 462 56 526 3.84e-86 273
Msa0842220 MtrunA17_Chr5g0423981 33.693 463 276 9 4 462 9 444 1.13e-85 270
Msa0842220 MtrunA17_Chr6g0454181 33.054 478 294 10 4 462 9 479 2.48e-85 270
Msa0842220 MtrunA17_Chr4g0050341 34.631 488 277 14 4 463 18 491 3.58e-85 270
Msa0842220 MtrunA17_Chr6g0454131 35.124 484 271 11 4 460 9 476 4.47e-84 267
Msa0842220 MtrunA17_Chr6g0454151 34.792 480 277 13 4 460 9 475 6.45e-84 266
Msa0842220 MtrunA17_Chr6g0454201 35.000 480 282 13 4 462 10 480 9.24e-84 266
Msa0842220 MtrunA17_Chr6g0452771 33.474 475 296 8 4 462 9 479 1.71e-82 263
Msa0842220 MtrunA17_Chr3g0118701 33.958 480 285 14 2 460 12 480 2.89e-82 262
Msa0842220 MtrunA17_Chr3g0118771 33.814 485 279 13 2 460 18 486 4.57e-82 262
Msa0842220 MtrunA17_Chr3g0118661 34.990 483 275 14 2 460 10 477 7.67e-82 261
Msa0842220 MtrunA17_Chr3g0118671 34.310 478 278 13 5 459 6 470 1.13e-81 260
Msa0842220 MtrunA17_Chr6g0454361 33.895 475 288 12 4 459 10 477 2.18e-81 260
Msa0842220 MtrunA17_Chr6g0454341 33.474 475 290 13 4 460 9 475 6.11e-81 258
Msa0842220 MtrunA17_Chr8g0336331 32.845 478 290 11 5 462 10 476 8.54e-81 258
Msa0842220 MtrunA17_Chr6g0454211 34.100 478 289 10 4 462 296 766 1.05e-80 265
Msa0842220 MtrunA17_Chr6g0454211 32.443 262 139 5 125 381 8 236 3.70e-39 150
Msa0842220 MtrunA17_Chr3g0078841 32.911 474 294 12 4 460 9 475 2.69e-80 257
Msa0842220 MtrunA17_Chr6g0454351 33.264 478 276 13 4 462 11 464 4.10e-80 256
Msa0842220 MtrunA17_Chr6g0454321 33.042 457 284 11 5 445 10 460 5.09e-78 255
Msa0842220 MtrunA17_Chr3g0118711 33.265 487 283 14 2 462 10 480 9.96e-77 248
Msa0842220 MtrunA17_Chr3g0112771 32.421 475 273 14 6 465 13 454 3.89e-74 240
Msa0842220 MtrunA17_Chr5g0426401 42.857 301 163 7 168 462 13 310 1.28e-73 234
Msa0842220 MtrunA17_Chr4g0032331 34.238 479 261 16 6 465 9 452 8.17e-73 236
Msa0842220 MtrunA17_Chr3g0112761 33.684 475 271 14 5 465 8 452 3.72e-72 235
Msa0842220 MtrunA17_Chr6g0454271 38.194 288 166 3 182 462 4 286 2.66e-70 225
Msa0842220 MtrunA17_Chr3g0118751 31.405 484 263 12 2 460 3 442 7.05e-69 226
Msa0842220 MtrunA17_Chr6g0454251 33.333 399 241 9 2 382 4 395 1.20e-64 213
Msa0842220 MtrunA17_Chr8g0380531 32.203 472 284 14 5 463 10 458 2.14e-64 215
Msa0842220 MtrunA17_Chr7g0218821 31.772 491 267 15 1 463 1 451 1.28e-61 207
Msa0842220 MtrunA17_Chr6g0464871 32.770 473 268 17 5 459 23 463 2.88e-61 207
Msa0842220 MtrunA17_Chr7g0218811 30.882 476 276 13 1 461 11 448 6.23e-60 202
Msa0842220 MtrunA17_Chr7g0249981 29.895 475 286 16 5 465 25 466 3.46e-59 202
Msa0842220 MtrunA17_Chr7g0250001 29.289 478 276 14 5 459 6 444 9.70e-59 200
Msa0842220 MtrunA17_Chr7g0218831 30.444 473 275 12 4 461 5 438 1.01e-58 199
Msa0842220 MtrunA17_Chr3g0118721 35.764 288 176 5 182 462 4 289 6.30e-58 193
Msa0842220 MtrunA17_Chr6g0454221 42.241 232 121 4 237 460 2 228 7.92e-58 193
Msa0842220 MtrunA17_Chr6g0464921 31.866 477 272 17 3 459 9 452 9.48e-58 197
Msa0842220 MtrunA17_Chr5g0414321 30.608 477 276 18 5 462 11 451 1.30e-57 197
Msa0842220 MtrunA17_Chr6g0464881 30.947 475 280 17 2 459 8 451 2.04e-57 196
Msa0842220 MtrunA17_Chr8g0366391 30.372 484 302 16 5 465 9 480 6.61e-57 196
Msa0842220 MtrunA17_Chr5g0414331 30.480 479 274 18 5 462 13 453 2.32e-56 194
Msa0842220 MtrunA17_Chr3g0121991 30.722 485 297 12 5 465 79 548 4.50e-56 195
Msa0842220 MtrunA17_Chr6g0464841 30.544 478 272 17 5 459 11 451 1.89e-55 191
Msa0842220 MtrunA17_Chr7g0218841 29.851 469 284 11 4 461 5 439 1.04e-54 189
Msa0842220 MtrunA17_Chr6g0454171 36.466 266 147 4 201 460 58 307 1.54e-54 184
Msa0842220 MtrunA17_Chr1g0207981 29.769 477 299 12 5 462 13 472 1.02e-53 187
Msa0842220 MtrunA17_Chr7g0249931 28.782 476 292 15 5 465 40 483 2.17e-52 184
Msa0842220 MtrunA17_Chr6g0464861 28.958 480 280 19 3 459 9 450 5.83e-52 182
Msa0842220 MtrunA17_Chr7g0275681 30.339 501 280 18 2 462 9 480 7.51e-51 179
Msa0842220 MtrunA17_Chr8g0377921 28.482 481 297 15 4 459 2 460 1.08e-50 179
Msa0842220 MtrunA17_Chr8g0347281 30.801 487 270 17 4 458 17 468 2.49e-50 178
Msa0842220 MtrunA17_Chr8g0355011 30.556 360 201 8 108 462 46 361 2.26e-49 172
Msa0842220 MtrunA17_Chr7g0265041 28.770 504 295 16 1 462 7 488 3.12e-49 175
Msa0842220 MtrunA17_Chr7g0265151 30.739 501 278 18 5 462 9 483 5.66e-49 174
Msa0842220 MtrunA17_Chr1g0207861 28.898 481 303 15 5 464 8 470 1.15e-48 174
Msa0842220 MtrunA17_Chr5g0401721 28.041 485 300 16 2 459 5 467 2.30e-48 172
Msa0842220 MtrunA17_Chr4g0053321 28.814 472 296 15 6 459 27 476 3.14e-48 172
Msa0842220 MtrunA17_Chr4g0044511 27.642 492 299 17 5 464 40 506 5.93e-48 172
Msa0842220 MtrunA17_Chr4g0053501 28.632 475 295 16 5 459 11 461 2.39e-47 170
Msa0842220 MtrunA17_Chr1g0207971 28.661 478 291 14 5 463 8 454 3.32e-47 169
Msa0842220 MtrunA17_Chr1g0161351 28.157 483 306 15 5 465 37 500 4.76e-47 169
Msa0842220 MtrunA17_Chr8g0377941 29.752 484 283 16 6 462 8 461 4.81e-47 169
Msa0842220 MtrunA17_Chr3g0122001 30.957 491 282 16 5 462 486 952 5.84e-47 174
Msa0842220 MtrunA17_Chr3g0122001 29.448 489 299 12 5 465 6 476 1.01e-46 173
Msa0842220 MtrunA17_Chr8g0382021 30.928 485 268 19 10 462 39 488 1.62e-46 168
Msa0842220 MtrunA17_Chr8g0347271 29.979 487 274 18 4 458 18 469 2.83e-46 167
Msa0842220 MtrunA17_Chr7g0243631 27.565 497 304 15 5 465 13 489 7.97e-46 166
Msa0842220 MtrunA17_Chr3g0079731 27.525 505 291 14 2 460 3 478 1.09e-45 166
Msa0842220 MtrunA17_Chr7g0275511 30.303 495 268 21 4 458 14 471 1.10e-45 165
Msa0842220 MtrunA17_Chr4g0044501 28.398 493 297 16 5 465 10 478 1.99e-45 165
Msa0842220 MtrunA17_Chr8g0365811 27.651 481 309 14 6 464 496 959 2.60e-45 169
Msa0842220 MtrunA17_Chr8g0365811 27.430 463 287 17 2 435 5 447 1.96e-41 158
Msa0842220 MtrunA17_Chr6g0454371 44.118 170 93 2 295 462 1 170 4.65e-45 155
Msa0842220 MtrunA17_Chr3g0098111 27.721 487 312 15 2 466 5 473 1.66e-44 162
Msa0842220 MtrunA17_Chr7g0243681 28.169 497 296 18 5 465 11 482 3.22e-44 162
Msa0842220 MtrunA17_Chr1g0179901 28.400 500 294 22 5 462 16 493 4.82e-44 161
Msa0842220 MtrunA17_Chr5g0431441 28.025 471 303 15 5 462 18 465 6.18e-44 160
Msa0842220 MtrunA17_Chr5g0429711 29.730 481 285 18 5 462 11 461 6.88e-44 160
Msa0842220 MtrunA17_Chr6g0462531 27.651 481 299 15 6 460 5 462 8.92e-44 160
Msa0842220 MtrunA17_Chr7g0249961 35.865 237 142 5 237 467 32 264 9.67e-44 155
Msa0842220 MtrunA17_Chr7g0218791 26.907 472 296 13 1 455 1 440 1.18e-43 159
Msa0842220 MtrunA17_Chr8g0336691 28.600 500 288 19 2 465 10 476 1.61e-43 164
Msa0842220 MtrunA17_Chr8g0336691 29.495 495 292 16 1 465 915 1382 5.91e-43 162
Msa0842220 MtrunA17_Chr8g0336691 27.178 482 292 16 1 465 476 915 7.47e-37 144
Msa0842220 MtrunA17_Chr1g0207951 28.689 488 292 15 2 466 120 574 2.93e-43 163
Msa0842220 MtrunA17_Chr1g0207951 27.984 486 304 17 2 466 652 1112 3.02e-42 160
Msa0842220 MtrunA17_Chr1g0159551 36.842 266 142 5 215 462 202 459 3.76e-43 158
Msa0842220 MtrunA17_Chr5g0419771 28.942 501 299 16 5 467 36 517 4.31e-43 159
Msa0842220 MtrunA17_Chr8g0373301 31.565 377 206 16 108 458 112 462 7.68e-43 157
Msa0842220 MtrunA17_Chr8g0335141 28.364 483 304 16 4 464 8 470 9.22e-43 157
Msa0842220 MtrunA17_Chr6g0462571 27.044 477 300 16 6 458 5 457 9.63e-43 157
Msa0842220 MtrunA17_Chr5g0419761 27.677 495 303 17 5 462 9 485 1.08e-42 157
Msa0842220 MtrunA17_Chr1g0173121 37.970 266 138 6 215 462 206 462 1.82e-42 156
Msa0842220 MtrunA17_Chr1g0207831 27.254 477 307 13 6 463 9 464 3.26e-42 155
Msa0842220 MtrunA17_Chr7g0243931 28.138 494 305 18 5 465 17 493 8.57e-42 155
Msa0842220 MtrunA17_Chr4g0060511 27.565 497 307 15 5 465 11 490 1.31e-41 154
Msa0842220 MtrunA17_Chr8g0336651 28.056 499 296 16 1 465 777 1246 1.67e-41 158
Msa0842220 MtrunA17_Chr8g0336651 29.592 490 280 20 2 458 3 460 5.33e-37 145
Msa0842220 MtrunA17_Chr8g0336651 32.746 284 149 9 191 465 527 777 9.58e-36 141
Msa0842220 MtrunA17_Chr7g0265101 27.088 491 312 17 5 462 9 486 6.75e-41 153
Msa0842220 MtrunA17_Chr7g0243771 27.146 501 297 16 5 465 6 478 7.31e-41 152
Msa0842220 MtrunA17_Chr7g0243951 27.846 492 308 18 5 465 11 486 9.31e-41 152
Msa0842220 MtrunA17_Chr8g0335161 28.778 483 289 19 5 458 6 462 1.26e-40 151
Msa0842220 MtrunA17_Chr5g0431361 27.066 484 289 15 5 464 12 455 1.34e-40 151
Msa0842220 MtrunA17_Chr4g0011051 28.024 496 308 18 5 465 9 490 3.41e-40 150
Msa0842220 MtrunA17_Chr6g0486251 29.400 483 282 18 6 458 7 460 3.52e-40 150
Msa0842220 MtrunA17_Chr6g0486201 29.400 483 282 18 6 458 7 460 3.52e-40 150
Msa0842220 MtrunA17_Chr6g0463891 27.510 498 300 16 6 465 13 487 3.57e-40 150
Msa0842220 MtrunA17_Chr8g0361371 28.717 491 282 21 6 459 8 467 6.80e-40 149
Msa0842220 MtrunA17_Chr8g0336261 46.099 141 65 2 295 429 1 136 7.11e-40 140
Msa0842220 MtrunA17_Chr8g0334861 33.333 270 143 6 215 459 203 460 1.56e-39 148
Msa0842220 MtrunA17_Chr7g0243871 26.653 499 296 15 5 465 9 475 1.90e-39 148
Msa0842220 MtrunA17_Chr7g0265111 29.459 499 293 17 5 464 39 517 3.10e-39 149
Msa0842220 MtrunA17_Chr8g0336731 29.006 493 285 18 7 466 34 494 4.05e-39 147
Msa0842220 MtrunA17_Chr5g0442491 27.006 511 287 17 1 462 1 474 4.18e-39 147
Msa0842220 MtrunA17_Chr7g0235051 27.824 478 284 14 5 459 11 450 6.12e-39 147
Msa0842220 MtrunA17_Chr6g0454231 32.685 257 130 5 213 465 4 221 6.33e-39 147
Msa0842220 MtrunA17_Chr6g0454231 26.695 236 152 9 4 225 249 477 6.00e-12 67.4
Msa0842220 MtrunA17_Chr3g0106231 27.216 485 283 17 5 466 18 455 6.52e-39 147
Msa0842220 MtrunA17_Chr5g0393591 25.319 470 290 13 5 463 17 436 8.21e-39 146
Msa0842220 MtrunA17_Chr8g0336741 29.630 486 279 22 5 458 13 467 9.84e-39 146
Msa0842220 MtrunA17_Chr8g0334851 31.854 383 206 14 98 451 102 458 1.09e-38 146
Msa0842220 MtrunA17_Chr6g0462551 26.860 484 295 17 6 458 5 460 1.14e-38 146
Msa0842220 MtrunA17_Chr6g0462521 25.941 478 297 13 6 460 5 448 1.37e-38 145
Msa0842220 MtrunA17_Chr7g0243801 26.747 501 299 16 5 465 7 479 1.62e-38 146
Msa0842220 MtrunA17_Chr5g0440421 28.736 522 278 25 4 465 9 496 1.75e-38 146
Msa0842220 MtrunA17_Chr7g0232411 27.364 497 299 17 2 466 3 469 2.37e-38 145
Msa0842220 MtrunA17_Chr4g0014061 34.164 281 161 7 207 465 197 475 2.53e-38 145
Msa0842220 MtrunA17_Chr5g0448521 27.565 497 295 19 1 462 1 467 3.50e-38 144
Msa0842220 MtrunA17_Chr4g0066151 25.000 488 310 13 6 463 19 480 4.04e-38 145
Msa0842220 MtrunA17_Chr7g0243781 25.646 503 299 18 5 465 9 478 4.30e-38 145
Msa0842220 MtrunA17_Chr7g0232341 27.711 498 291 19 5 466 6 470 4.95e-38 144
Msa0842220 MtrunA17_Chr7g0243861 25.956 497 312 16 5 465 14 490 5.38e-38 144
Msa0842220 MtrunA17_Chr5g0442581 26.562 512 290 19 1 462 1 476 5.94e-38 145
Msa0842220 MtrunA17_Chr7g0232331 28.458 506 283 21 2 466 3 470 6.54e-38 144
Msa0842220 MtrunA17_Chr1g0153451 28.157 483 295 18 2 458 3 459 7.91e-38 144
Msa0842220 MtrunA17_Chr4g0044481 28.744 414 242 13 3 404 25 397 9.12e-38 142
Msa0842220 MtrunA17_Chr6g0449931 25.969 516 287 20 1 466 1 471 9.94e-38 143
Msa0842220 MtrunA17_Chr6g0459311 27.572 486 287 19 6 458 14 467 1.02e-37 143
Msa0842220 MtrunA17_Chr6g0462541 25.934 482 301 17 6 458 5 459 1.03e-37 144
Msa0842220 MtrunA17_Chr5g0442601 27.059 510 290 21 1 462 400 875 1.07e-37 147
Msa0842220 MtrunA17_Chr5g0442601 28.660 321 157 12 108 402 62 336 3.87e-25 109
Msa0842220 MtrunA17_Chr1g0207931 32.443 262 161 5 217 466 244 501 1.26e-37 144
Msa0842220 MtrunA17_Chr4g0044521 31.392 309 181 10 175 460 164 464 1.77e-37 142
Msa0842220 MtrunA17_Chr7g0232401 29.972 357 208 11 117 451 120 456 1.92e-37 142
Msa0842220 MtrunA17_Chr5g0431401 25.887 479 298 14 5 464 10 450 2.03e-37 142
Msa0842220 MtrunA17_Chr5g0401851 25.911 494 312 16 7 465 12 486 2.37e-37 142
Msa0842220 MtrunA17_Chr7g0265051 28.367 490 305 19 5 462 9 484 2.55e-37 143
Msa0842220 MtrunA17_Chr5g0448551 26.573 429 286 10 1 422 3 409 3.48e-37 142
Msa0842220 MtrunA17_Chr4g0042891 34.457 267 140 8 215 460 211 463 3.53e-37 142
Msa0842220 MtrunA17_Chr7g0265141 26.148 501 299 16 5 460 9 483 4.18e-37 142
Msa0842220 MtrunA17_Chr8g0339601 34.091 264 136 10 214 450 66 318 5.56e-37 138
Msa0842220 MtrunA17_Chr8g0339451 29.620 395 220 18 97 455 84 456 6.30e-37 141
Msa0842220 MtrunA17_Chr8g0334831 28.000 500 283 20 6 459 7 475 7.58e-37 141
Msa0842220 MtrunA17_Chr4g0072761 29.282 362 232 11 105 464 115 454 7.69e-37 140
Msa0842220 MtrunA17_Chr5g0429681 28.838 482 296 19 1 459 39 496 9.13e-37 141
Msa0842220 MtrunA17_Chr4g0072771 27.004 474 309 17 1 464 21 467 1.05e-36 140
Msa0842220 MtrunA17_Chr6g0453941 28.955 335 168 7 2 335 8 273 1.20e-36 136
Msa0842220 MtrunA17_Chr8g0339461 31.367 373 205 18 108 451 110 460 1.99e-36 140
Msa0842220 MtrunA17_Chr4g0042931 33.704 270 146 7 213 460 203 461 3.02e-36 139
Msa0842220 MtrunA17_Chr5g0442541 26.337 505 289 19 1 462 1 465 4.02e-36 139
Msa0842220 MtrunA17_Chr4g0066221 31.673 281 163 8 212 465 205 483 7.20e-36 139
Msa0842220 MtrunA17_Chr4g0066261 27.126 494 297 18 10 465 16 484 8.06e-36 138
Msa0842220 MtrunA17_Chr7g0232311 30.854 363 200 15 123 459 123 460 8.78e-36 138
Msa0842220 MtrunA17_Chr5g0442561 25.646 503 302 17 1 462 1 472 1.17e-35 137
Msa0842220 MtrunA17_Chr4g0066281 32.039 309 172 10 185 463 167 467 1.95e-35 137
Msa0842220 MtrunA17_Chr7g0232391 32.117 274 154 7 215 466 206 469 2.19e-35 137
Msa0842220 MtrunA17_Chr7g0243711 32.800 250 148 5 235 465 71 319 5.08e-35 133
Msa0842220 MtrunA17_Chr8g0339441 38.647 207 103 7 272 455 217 422 6.40e-35 135
Msa0842220 MtrunA17_Chr5g0431421 26.971 482 289 16 5 464 10 450 9.58e-35 135
Msa0842220 MtrunA17_Chr5g0431371 25.880 483 293 16 5 464 10 450 2.55e-34 134
Msa0842220 MtrunA17_Chr6g0463861 28.997 369 208 15 123 460 126 471 2.82e-34 134
Msa0842220 MtrunA17_Chr8g0339631 33.460 263 138 11 214 451 207 457 3.43e-34 134
Msa0842220 MtrunA17_Chr7g0243851 32.721 272 160 8 216 465 175 445 4.88e-34 133
Msa0842220 MtrunA17_Chr2g0294921 26.157 497 298 18 10 465 165 633 5.24e-34 135
Msa0842220 MtrunA17_Chr6g0463851 27.567 526 270 24 1 463 6 483 5.34e-34 133
Msa0842220 MtrunA17_Chr8g0355221 29.710 276 168 7 213 465 217 489 6.05e-34 133
Msa0842220 MtrunA17_Chr2g0307961 26.875 480 307 15 4 462 12 468 6.30e-34 133
Msa0842220 MtrunA17_Chr8g0369341 25.820 488 314 15 5 466 7 472 6.90e-34 133
Msa0842220 MtrunA17_Chr7g0243761 26.804 485 293 16 5 465 11 457 9.01e-34 132
Msa0842220 MtrunA17_Chr5g0442521 25.347 505 304 16 1 462 1 475 9.22e-34 132
Msa0842220 MtrunA17_Chr5g0428081 26.693 502 306 15 1 465 6 482 1.10e-33 132
Msa0842220 MtrunA17_Chr1g0165701 31.557 244 150 4 239 465 243 486 2.20e-33 132
Msa0842220 MtrunA17_Chr5g0432731 31.076 251 159 5 166 415 3 240 2.81e-33 127
Msa0842220 MtrunA17_Chr4g0066201 26.233 507 290 21 1 465 13 477 6.26e-33 130
Msa0842220 MtrunA17_Chr5g0420801 25.620 484 310 15 5 466 7 462 7.42e-33 130
Msa0842220 MtrunA17_Chr4g0066131 30.034 293 175 8 201 465 187 477 8.27e-33 130
Msa0842220 MtrunA17_Chr2g0294931 26.400 500 297 18 6 463 12 482 1.44e-32 129
Msa0842220 MtrunA17_Chr2g0329111 24.900 502 316 19 2 466 3 480 1.46e-32 129
Msa0842220 MtrunA17_Chr5g0416741 26.735 389 255 10 96 465 109 486 2.39e-32 129
Msa0842220 MtrunA17_Chr7g0218311 30.847 295 170 9 200 465 197 486 2.60e-32 129
Msa0842220 MtrunA17_Chr2g0302991 28.338 367 216 11 117 460 118 460 9.54e-32 126
Msa0842220 MtrunA17_Chr6g0453981 34.222 225 137 5 125 342 8 228 1.06e-31 121
Msa0842220 MtrunA17_Chr2g0302961 26.343 391 237 12 96 460 98 463 1.31e-31 126
Msa0842220 MtrunA17_Chr1g0153461 33.981 206 117 4 272 458 3 208 1.57e-31 120
Msa0842220 MtrunA17_Chr7g0243611 30.208 288 171 8 123 404 8 271 1.92e-31 122
Msa0842220 MtrunA17_Chr8g0374901 31.597 288 152 11 213 465 204 481 1.93e-31 126
Msa0842220 MtrunA17_Chr8g0374941 32.014 278 152 9 213 459 1143 1414 2.94e-31 127
Msa0842220 MtrunA17_Chr8g0374941 30.258 271 145 10 213 445 205 469 6.60e-27 114
Msa0842220 MtrunA17_Chr8g0374941 29.221 308 181 10 170 444 623 926 1.50e-26 113
Msa0842220 MtrunA17_Chr5g0403641 29.861 288 153 9 203 455 222 495 7.76e-31 124
Msa0842220 MtrunA17_Chr8g0374971 30.282 284 163 8 212 465 205 483 9.07e-31 124
Msa0842220 MtrunA17_Chr5g0442511 25.703 498 287 17 1 463 45 494 1.21e-30 124
Msa0842220 MtrunA17_Chr4g0066171 26.285 506 290 19 1 465 16 479 1.47e-30 123
Msa0842220 MtrunA17_Chr5g0431431 31.873 251 137 7 158 399 99 324 1.80e-30 121
Msa0842220 MtrunA17_Chr2g0294941 28.308 325 194 12 110 416 17 320 3.51e-30 120
Msa0842220 MtrunA17_Chr8g0374931 29.252 294 177 8 200 465 194 484 4.53e-30 122
Msa0842220 MtrunA17_Chr8g0350881 31.250 288 163 9 206 463 199 481 5.82e-30 122
Msa0842220 MtrunA17_Chr7g0241801 26.419 458 262 16 5 454 9 399 1.08e-29 120
Msa0842220 MtrunA17_Chr7g0241781 26.778 478 271 19 5 463 9 426 2.34e-29 119
Msa0842220 MtrunA17_Chr7g0243911 33.990 203 121 4 266 457 15 215 3.83e-29 114
Msa0842220 MtrunA17_Chr8g0370941 28.010 407 211 18 109 462 111 488 1.22e-28 118
Msa0842220 MtrunA17_Chr3g0106251 28.378 296 183 7 182 466 20 297 1.37e-28 115
Msa0842220 MtrunA17_Chr5g0410941 25.000 492 302 16 10 463 28 490 1.80e-28 117
Msa0842220 MtrunA17_Chr8g0357361 34.135 208 121 5 208 408 55 253 7.95e-28 111
Msa0842220 MtrunA17_Chr6g0482061 25.466 483 297 17 5 450 11 467 1.21e-27 115
Msa0842220 MtrunA17_Chr5g0416821 29.368 269 176 8 207 465 212 476 3.24e-27 114
Msa0842220 MtrunA17_Chr8g0361411 24.689 482 309 15 5 465 8 456 4.59e-27 113
Msa0842220 MtrunA17_Chr7g0243811 33.846 195 116 5 213 402 187 373 1.82e-26 110
Msa0842220 MtrunA17_Chr7g0232351 37.500 184 87 6 215 381 206 378 7.05e-26 108
Msa0842220 MtrunA17_Chr5g0409591 30.645 248 139 9 216 434 212 455 1.44e-25 109
Msa0842220 MtrunA17_Chr6g0464091 27.518 407 260 13 5 398 18 402 4.98e-25 107
Msa0842220 MtrunA17_Chr6g0454111 32.121 165 110 2 152 315 20 183 3.04e-24 99.4
Msa0842220 MtrunA17_Chr5g0427571 43.651 126 66 4 275 396 105 229 3.44e-24 102
Msa0842220 MtrunA17_Chr8g0336321 43.939 132 68 5 270 396 265 395 6.14e-24 104
Msa0842220 MtrunA17_Chr3g0092031 40.476 126 73 2 274 398 5 129 7.50e-24 99.0
Msa0842220 MtrunA17_Chr7g0231631 29.572 257 171 5 216 465 9 262 8.44e-24 100
Msa0842220 MtrunA17_Chr1g0196851 23.841 453 286 16 5 433 49 466 1.37e-23 103
Msa0842220 MtrunA17_Chr8g0337381 39.062 128 73 2 342 465 2 128 1.70e-23 95.9
Msa0842220 MtrunA17_Chr2g0278721 25.000 452 306 16 5 438 517 953 2.25e-23 103
Msa0842220 MtrunA17_Chr2g0278721 27.273 418 245 16 5 398 15 397 3.22e-21 97.4
Msa0842220 MtrunA17_Chr4g0066141 37.107 159 83 4 324 465 196 354 3.43e-23 100
Msa0842220 MtrunA17_Chr8g0336251 39.695 131 75 3 270 396 265 395 6.85e-23 101
Msa0842220 MtrunA17_Chr8g0367221 37.297 185 100 8 275 448 1058 1237 7.34e-23 102
Msa0842220 MtrunA17_Chr8g0367221 26.329 414 258 14 5 398 12 398 4.06e-22 100
Msa0842220 MtrunA17_Chr8g0367221 40.310 129 71 3 275 398 1548 1675 8.86e-22 99.4
Msa0842220 MtrunA17_Chr2g0278741 27.184 412 253 16 5 398 97 479 1.61e-22 100
Msa0842220 MtrunA17_Chr3g0079711 34.595 185 97 7 299 460 3 186 6.29e-22 93.2
Msa0842220 MtrunA17_Chr4g0069611 25.122 410 259 14 5 398 15 392 8.13e-22 97.8
Msa0842220 MtrunA17_Chr1g0207881 32.692 156 98 1 318 466 233 388 1.26e-20 93.6
Msa0842220 MtrunA17_Chr6g0466831 24.783 460 291 18 5 442 18 444 1.26e-20 94.4
Msa0842220 MtrunA17_Chr4g0039881 26.456 412 231 17 15 398 2 369 2.53e-20 93.2
Msa0842220 MtrunA17_Chr7g0250021 26.012 346 214 13 5 338 12 327 9.06e-20 90.1
Msa0842220 MtrunA17_Chr6g0466841 23.426 397 282 9 5 398 18 395 9.78e-20 91.7
Msa0842220 MtrunA17_Chr4g0029131 24.764 424 256 16 5 406 12 394 2.25e-19 91.3
Msa0842220 MtrunA17_Chr2g0302851 26.005 423 239 16 5 398 16 393 1.08e-18 88.6
Msa0842220 MtrunA17_Chr8g0334841 32.927 164 88 5 175 330 1 150 4.07e-17 79.0
Msa0842220 MtrunA17_Chr4g0040691 23.444 482 313 18 5 460 8 459 5.08e-17 83.2
Msa0842220 MtrunA17_Chr4g0040711 23.385 449 293 15 5 433 8 425 5.57e-16 80.1
Msa0842220 MtrunA17_Chr4g0029151 22.673 419 273 13 5 407 20 403 1.43e-15 79.0
Msa0842220 MtrunA17_Chr5g0426411 32.759 174 93 6 4 164 11 173 1.59e-14 71.6
Msa0842220 MtrunA17_Chr5g0442501 25.000 344 192 10 1 319 1 303 6.30e-14 72.4
Msa0842220 MtrunA17_Chr6g0454391 33.929 112 59 3 358 462 13 116 1.13e-13 67.8
Msa0842220 MtrunA17_Chr7g0243731 43.056 72 41 0 335 406 2 73 1.93e-13 65.5
Msa0842220 MtrunA17_Chr2g0283041 25.373 201 141 3 273 465 256 455 2.04e-13 72.0
Msa0842220 MtrunA17_Chr8g0336271 23.846 260 173 8 5 245 10 263 1.79e-12 67.8
Msa0842220 MtrunA17_Chr3g0118741 55.769 52 22 1 2 52 3 54 2.69e-12 62.4
Msa0842220 MtrunA17_Chr5g0427561 32.955 88 50 3 380 462 1 84 2.83e-11 59.7
Msa0842220 MtrunA17_Chr6g0454281 27.586 203 124 9 4 188 9 206 6.39e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842220 AT1G22380.1 35.185 486 275 12 2 462 10 480 1.16e-92 290
Msa0842220 AT1G22400.1 32.298 483 288 11 2 459 10 478 3.81e-86 273
Msa0842220 AT1G22360.1 33.333 486 278 12 5 462 10 477 5.33e-85 270
Msa0842220 AT1G22340.1 34.310 478 291 12 2 462 10 481 1.32e-83 266
Msa0842220 AT1G78270.1 34.310 478 290 12 2 462 10 480 1.61e-83 266
Msa0842220 AT1G22360.2 33.196 485 268 13 5 462 10 465 3.93e-83 264
Msa0842220 AT1G22370.2 33.056 481 287 11 2 462 10 475 4.32e-82 262
Msa0842220 AT3G11340.1 34.172 477 272 14 1 465 1 447 7.84e-76 244
Msa0842220 AT5G05880.1 32.770 473 275 12 5 464 8 450 5.88e-69 227
Msa0842220 AT3G46670.1 32.842 475 273 14 5 465 9 451 6.54e-69 227
Msa0842220 AT3G46680.1 32.347 473 273 13 2 459 6 446 1.20e-68 226
Msa0842220 AT3G46660.1 33.542 480 263 14 6 465 15 458 3.03e-68 225
Msa0842220 AT5G05900.1 32.704 477 265 15 5 462 8 447 5.30e-68 224
Msa0842220 AT5G05890.1 32.075 477 277 16 5 464 8 454 7.67e-68 224
Msa0842220 AT3G55710.1 31.092 476 285 16 6 465 9 457 1.77e-65 218
Msa0842220 AT3G46700.1 32.292 480 271 15 1 464 5 446 2.00e-65 218
Msa0842220 AT3G46690.1 32.712 483 270 15 1 464 5 451 3.16e-64 214
Msa0842220 AT5G05860.1 32.983 476 264 15 5 462 9 447 3.42e-64 214
Msa0842220 AT3G55700.1 30.608 477 284 13 5 465 8 453 4.31e-64 214
Msa0842220 AT3G46720.1 32.143 476 271 16 2 464 6 442 1.05e-63 213
Msa0842220 AT5G05870.1 30.851 470 290 11 5 462 8 454 1.24e-62 211
Msa0842220 AT5G59590.1 31.381 478 264 17 5 459 10 446 3.03e-62 209
Msa0842220 AT2G43820.1 30.849 483 270 16 5 464 7 448 1.07e-61 207
Msa0842220 AT5G38010.1 31.489 470 284 12 5 462 10 453 1.91e-61 207
Msa0842220 AT5G59580.1 30.947 475 277 17 5 463 9 448 4.77e-61 206
Msa0842220 AT3G46650.1 30.737 475 266 13 5 465 10 435 1.03e-60 205
Msa0842220 AT2G26480.1 29.764 467 290 15 5 462 8 445 4.90e-60 203
Msa0842220 AT5G38040.1 31.749 463 268 15 13 460 18 447 5.40e-60 203
Msa0842220 AT3G02100.1 31.656 477 289 12 1 464 9 461 7.27e-60 203
Msa0842220 AT2G43840.1 29.412 476 284 15 5 463 7 447 4.20e-58 198
Msa0842220 AT2G43840.2 29.387 473 288 14 5 463 7 447 4.42e-58 198
Msa0842220 AT1G22370.1 35.548 301 186 6 168 462 7 305 7.39e-58 193
Msa0842220 AT4G15480.1 28.571 476 306 10 5 462 19 478 3.54e-57 197
Msa0842220 AT2G23260.1 31.064 470 286 17 5 462 10 453 2.39e-55 191
Msa0842220 AT3G21560.1 28.807 486 291 19 4 460 11 470 3.21e-53 186
Msa0842220 AT2G36970.1 28.986 483 302 15 4 464 9 472 1.15e-52 185
Msa0842220 AT2G28080.1 28.507 442 270 14 10 429 23 440 5.76e-52 182
Msa0842220 AT2G31750.1 28.330 473 298 16 5 462 8 454 6.02e-52 182
Msa0842220 AT2G31750.2 28.512 477 299 17 5 465 8 458 7.40e-52 182
Msa0842220 AT4G15490.1 28.008 482 294 17 5 459 8 463 2.50e-51 181
Msa0842220 AT5G17040.1 28.306 484 286 17 1 465 1 442 8.50e-51 179
Msa0842220 AT4G15500.1 27.521 476 301 12 4 459 8 459 9.03e-51 179
Msa0842220 AT5G17050.1 31.250 368 226 10 104 465 113 459 1.15e-50 179
Msa0842220 AT2G23250.1 30.407 467 269 18 14 462 7 435 2.02e-49 175
Msa0842220 AT2G31790.1 27.119 472 301 13 5 459 8 453 9.29e-49 174
Msa0842220 AT1G05675.1 28.998 469 300 8 2 459 3 449 1.46e-48 173
Msa0842220 AT4G15550.1 28.000 500 275 17 4 459 12 470 2.31e-48 173
Msa0842220 AT5G17040.2 32.680 306 187 8 165 465 49 340 2.40e-48 169
Msa0842220 AT5G26310.1 30.488 492 265 19 4 455 6 460 4.59e-48 172
Msa0842220 AT1G05680.1 28.750 480 287 15 2 459 3 449 1.96e-47 170
Msa0842220 AT5G17030.1 28.689 366 243 8 104 466 109 459 1.43e-46 167
Msa0842220 AT2G36760.1 29.234 496 300 17 5 464 14 494 1.80e-46 168
Msa0842220 AT1G30530.1 31.507 365 227 10 101 462 106 450 3.70e-46 166
Msa0842220 AT2G15480.1 27.902 491 303 14 2 460 7 478 9.04e-46 166
Msa0842220 AT2G36770.1 27.475 495 310 17 5 464 14 494 1.16e-45 166
Msa0842220 AT1G01420.2 30.204 490 275 19 3 458 9 465 2.13e-45 165
Msa0842220 AT1G01420.1 30.204 490 275 19 3 458 6 462 2.15e-45 165
Msa0842220 AT2G36780.1 28.049 492 311 17 5 466 14 492 2.59e-45 165
Msa0842220 AT4G01070.1 29.652 489 276 15 2 455 5 460 7.77e-45 163
Msa0842220 AT1G05560.1 28.803 493 278 20 1 462 1 451 1.13e-44 163
Msa0842220 AT1G05530.1 27.935 494 284 18 1 462 1 454 1.28e-44 162
Msa0842220 AT1G05560.2 28.803 493 278 20 1 462 51 501 2.16e-44 163
Msa0842220 AT5G66690.1 29.132 484 272 16 4 451 6 454 3.60e-44 162
Msa0842220 AT2G15480.2 27.146 501 304 14 2 460 7 488 4.63e-44 162
Msa0842220 AT4G34138.1 27.824 478 293 14 5 451 11 467 2.17e-43 159
Msa0842220 AT2G15490.3 28.252 492 300 16 2 460 4 475 3.72e-43 159
Msa0842220 AT3G16520.3 26.834 477 302 15 6 460 6 457 1.23e-42 157
Msa0842220 AT2G15490.1 28.081 495 300 16 2 460 4 478 1.35e-42 157
Msa0842220 AT1G24100.1 29.079 478 289 16 5 462 11 458 2.62e-42 156
Msa0842220 AT4G34131.1 26.531 490 312 15 5 464 10 481 4.14e-42 156
Msa0842220 AT3G53160.1 32.602 319 173 10 174 462 176 482 5.52e-42 156
Msa0842220 AT3G16520.1 27.021 470 293 16 6 449 6 451 6.76e-42 155
Msa0842220 AT3G16520.2 27.553 421 264 13 6 408 6 403 1.38e-41 154
Msa0842220 AT2G29730.1 25.458 491 318 14 1 467 1 467 4.78e-41 153
Msa0842220 AT2G36800.1 27.071 495 313 17 5 466 12 491 8.52e-41 152
Msa0842220 AT2G29710.1 26.069 491 301 14 1 460 1 460 1.50e-40 151
Msa0842220 AT1G01390.1 29.356 419 247 14 3 398 6 398 1.32e-39 149
Msa0842220 AT4G14090.1 27.235 481 285 16 4 459 12 452 1.40e-39 149
Msa0842220 AT1G01390.2 29.356 419 247 14 3 398 23 415 2.19e-39 149
Msa0842220 AT2G36750.1 27.381 504 296 18 5 465 10 486 3.15e-39 148
Msa0842220 AT4G34135.1 27.088 491 309 13 5 464 11 483 4.30e-39 148
Msa0842220 AT2G36790.1 27.435 503 300 19 5 464 13 493 4.83e-39 148
Msa0842220 AT3G50740.1 26.923 494 275 18 4 450 6 460 2.78e-37 143
Msa0842220 AT1G73880.1 26.994 489 298 19 5 466 14 470 1.36e-36 140
Msa0842220 AT3G22250.1 25.217 460 300 16 2 441 5 440 1.87e-36 140
Msa0842220 AT5G03490.1 26.547 501 280 19 2 465 16 465 1.46e-35 137
Msa0842220 AT1G10400.1 27.536 483 300 18 1 459 3 459 1.76e-35 137
Msa0842220 AT2G30140.2 26.471 476 294 17 5 462 13 450 2.30e-35 137
Msa0842220 AT2G30140.1 26.471 476 295 17 5 462 13 451 3.08e-35 136
Msa0842220 AT1G07250.1 27.479 484 286 19 5 451 6 461 6.98e-35 136
Msa0842220 AT3G21790.1 25.202 496 309 16 7 462 5 478 1.51e-34 135
Msa0842220 AT4G36770.1 32.197 264 135 7 212 446 199 447 1.02e-33 132
Msa0842220 AT3G53150.1 26.758 512 297 18 5 462 22 509 1.12e-33 133
Msa0842220 AT5G14860.1 27.843 510 274 26 5 462 8 475 3.84e-33 131
Msa0842220 AT2G18570.1 26.326 509 271 23 1 455 1 459 6.02e-33 130
Msa0842220 AT5G37950.2 32.500 280 162 8 106 381 81 337 2.26e-32 126
Msa0842220 AT2G29750.1 24.897 486 317 14 2 459 5 470 4.03e-32 128
Msa0842220 AT5G37950.1 31.786 280 170 8 106 381 81 343 7.59e-32 125
Msa0842220 AT2G18560.1 31.111 270 141 9 215 455 116 369 2.66e-31 124
Msa0842220 AT2G16890.2 24.845 483 314 15 5 462 9 467 8.65e-31 124
Msa0842220 AT1G07240.1 29.316 307 179 10 164 451 177 464 1.29e-30 124
Msa0842220 AT4G15280.1 26.200 500 290 17 7 460 5 471 1.97e-30 123
Msa0842220 AT3G21780.1 26.932 427 257 15 7 407 5 402 2.11e-30 123
Msa0842220 AT4G15280.2 26.052 499 292 16 7 460 37 503 2.21e-30 124
Msa0842220 AT2G29740.1 24.536 485 315 14 5 459 8 471 2.25e-30 123
Msa0842220 AT3G21800.1 28.235 425 259 16 6 407 5 406 6.92e-30 122
Msa0842220 AT4G15260.1 31.136 273 152 8 213 460 91 352 7.75e-30 119
Msa0842220 AT2G16890.3 26.014 419 270 13 5 407 9 403 1.60e-29 120
Msa0842220 AT1G07260.1 30.469 256 150 8 214 452 217 461 1.72e-29 120
Msa0842220 AT1G51210.1 23.902 410 258 10 4 398 19 389 2.57e-29 119
Msa0842220 AT2G30150.2 25.625 480 301 19 5 465 13 455 2.73e-29 120
Msa0842220 AT5G49690.1 26.195 481 307 19 2 466 7 455 5.19e-29 119
Msa0842220 AT3G21750.1 27.477 444 245 17 7 413 5 408 5.57e-29 119
Msa0842220 AT3G21760.1 25.747 435 266 14 7 408 5 415 1.04e-28 118
Msa0842220 AT5G12890.1 38.421 190 97 6 215 393 224 404 8.32e-28 116
Msa0842220 AT1G06000.1 30.882 272 160 9 207 459 168 430 1.04e-27 115
Msa0842220 AT2G30150.1 25.474 475 298 19 10 465 2 439 1.11e-27 115
Msa0842220 AT5G65550.1 26.316 418 266 13 5 406 9 400 2.90e-27 114
Msa0842220 AT4G01070.2 27.410 332 196 10 2 319 5 305 3.13e-20 92.0
Msa0842220 AT5G54010.1 24.228 421 260 15 5 407 6 385 2.22e-19 90.9
Msa0842220 AT2G22590.1 33.140 172 103 5 275 436 274 443 9.01e-18 85.9
Msa0842220 AT4G27560.1 22.542 417 269 15 5 406 7 384 3.29e-15 78.2
Msa0842220 AT1G64910.1 23.445 418 267 14 2 407 3 379 8.33e-15 76.6
Msa0842220 AT5G53990.1 31.387 137 89 2 275 407 244 379 2.19e-14 75.5
Msa0842220 AT4G34135.2 24.629 337 211 11 5 319 11 326 3.62e-14 73.9
Msa0842220 AT4G27570.1 22.410 415 272 14 5 406 7 384 5.38e-14 74.3
Msa0842220 AT1G50580.1 25.598 418 235 19 5 398 6 371 2.66e-13 72.0
Msa0842220 AT5G54060.1 22.129 479 329 13 6 464 14 468 2.65e-12 68.9
Msa0842220 AT4G09500.2 24.155 414 261 15 5 406 6 378 1.48e-11 66.6
Msa0842220 AT4G09500.1 32.308 130 81 4 282 406 226 353 3.92e-11 65.1

Find 97 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCCACTTTGAAGAAAT+TGG 0.151742 5_4:+19208849 None:intergenic
TGCTACTAAAATGGCGGATT+TGG 0.188389 5_4:-19208338 Msa0842220:CDS
TGGGGAAGTGGAGACGAATT+TGG 0.191985 5_4:+19208944 None:intergenic
AGGCTTACCATACATATTTA+TGG 0.193194 5_4:+19210323 None:intergenic
TTCAAAATCTGCTACTAAAA+TGG 0.200580 5_4:-19208347 Msa0842220:CDS
TAAGGAGAGAGGTTTGATTT+TGG 0.221542 5_4:-19208626 Msa0842220:CDS
CTAACCCAAGCATCACTTAA+AGG 0.264331 5_4:-19209018 Msa0842220:CDS
ACTGATTTGGCTGCTGAGTT+TGG 0.266869 5_4:-19210228 Msa0842220:CDS
GAGAAGAAATACTTGAGTTT+TGG 0.290736 5_4:-19208747 Msa0842220:CDS
GGGGAAGTGGAGACGAATTT+GGG 0.316790 5_4:+19208945 None:intergenic
AAGGAGAAGCATCCTGGATT+TGG 0.317655 5_4:-19210372 Msa0842220:CDS
GACGAATTTGGGAGAGAATT+GGG 0.319264 5_4:+19208956 None:intergenic
AAGATTTGATTCAGTATATA+AGG 0.326472 5_4:-19208270 Msa0842220:CDS
ATTCAGTATATAAGGTCTAT+TGG 0.329771 5_4:-19208262 Msa0842220:CDS
TTTCGGTACATCAAACAAAA+TGG 0.331422 5_4:-19209070 Msa0842220:CDS
CTGATTTGGCTGCTGAGTTT+GGG 0.334780 5_4:-19210227 Msa0842220:CDS
AGTGCGTAGTATACCTCTAA+TGG 0.342564 5_4:+19210110 None:intergenic
AGACGAATTTGGGAGAGAAT+TGG 0.348002 5_4:+19208955 None:intergenic
GTAAGTGAGGTTTGGAAGCT+TGG 0.358809 5_4:-19208451 Msa0842220:CDS
CTGATCAACCACTTAATAGT+AGG 0.368297 5_4:-19208477 Msa0842220:CDS
CATTGCCTTTAAGTGATGCT+TGG 0.369928 5_4:+19209013 None:intergenic
GGGCCAACAGTGTAGAGTTT+GGG 0.371311 5_4:+19208925 None:intergenic
TTTCTGTATGCCCAAGCTCT+TGG 0.371365 5_4:-19210154 Msa0842220:CDS
GTGGTGTGCCTATGATTTGT+TGG 0.376618 5_4:-19208510 Msa0842220:CDS
CAAAATAAGGAGAAGCATCC+TGG 0.377170 5_4:-19210378 Msa0842220:CDS
AAACTTTATCTAAAACAATA+TGG 0.380820 5_4:+19209046 None:intergenic
GAATATGGTGAATTATATTA+TGG 0.384555 5_4:-19208389 Msa0842220:CDS
CAGTGTAGAGTTTGGGGAAG+TGG 0.396257 5_4:+19208932 None:intergenic
CAAATCTTGGAGGTTATTGT+AGG 0.399409 5_4:+19208285 None:intergenic
TGGGCCAACAGTGTAGAGTT+TGG 0.401252 5_4:+19208924 None:intergenic
TGGTGACCTTGCTACTGATT+TGG 0.401952 5_4:-19210241 Msa0842220:CDS
TCGGAATGTTGTTGAGAATA+TGG 0.404862 5_4:-19208404 Msa0842220:CDS
TATGCCCAAGCTCTTGGACT+TGG 0.409489 5_4:-19210148 Msa0842220:CDS
ATTGCCTTTAAGTGATGCTT+GGG 0.413731 5_4:+19209014 None:intergenic
CACTCCAAGTCCAAGAGCTT+GGG 0.424017 5_4:+19210144 None:intergenic
TGTGGATGTACTCAGTGTTT+AGG 0.425236 5_4:+19210484 None:intergenic
ATGGTCTTGAATTGAAGCTT+AGG 0.425350 5_4:+19210411 None:intergenic
TTATATACTGAATCAAATCT+TGG 0.428359 5_4:+19208272 None:intergenic
TCAGTTGTATATGTTAGCTT+TGG 0.431301 5_4:-19208790 Msa0842220:CDS
TGAGGTTTGGAAGCTTGGAT+TGG 0.438209 5_4:-19208446 Msa0842220:CDS
GTAGGTTTGTAAGTGAGGTT+TGG 0.440134 5_4:-19208459 Msa0842220:CDS
CTTACAAACCTACTATTAAG+TGG 0.443768 5_4:+19208469 None:intergenic
GCTTGAGCATTGTGTTTACA+TGG 0.456188 5_4:+19210547 None:intergenic
AAATAAGGCCAACAAATCAT+AGG 0.459700 5_4:+19208502 None:intergenic
TTCTTCTCTTGTCATTGTTG+TGG 0.462665 5_4:+19208762 None:intergenic
ACCATCAGGATTTACACTCT+TGG 0.464702 5_4:+19208312 None:intergenic
ACTTGAGGAAAGAACTAGTA+AGG 0.465489 5_4:-19208644 Msa0842220:CDS
CAACTCCAATTTCTTCAAAG+TGG 0.471156 5_4:-19208854 Msa0842220:CDS
TGTAGAGATCTTCCACGTTT+CGG 0.471834 5_4:-19209087 Msa0842220:CDS
GTGCGTAGTATACCTCTAAT+GGG 0.477570 5_4:+19210111 None:intergenic
TGCAACGAGATTCCCATTAG+AGG 0.478288 5_4:-19210123 Msa0842220:intron
GCACTCCAAGTCCAAGAGCT+TGG 0.481348 5_4:+19210143 None:intergenic
GTGTTTACATGGCCTTGTGC+TGG 0.482580 5_4:+19210558 None:intergenic
ATTTCCTCCATAAATATGTA+TGG 0.483586 5_4:-19210330 Msa0842220:CDS
CTGTTGCTGCTAGTAGCGTC+TGG 0.486057 5_4:-19210182 Msa0842220:CDS
CGAATTATGTTCTCCATGCC+TGG 0.491483 5_4:+19209111 None:intergenic
ACTTTAGAGAGTGTGGTTTG+TGG 0.496972 5_4:-19208529 Msa0842220:CDS
TGGTCTTGAATTGAAGCTTA+GGG 0.509318 5_4:+19210412 None:intergenic
ACATGGCCTTGTGCTGGACA+TGG 0.511830 5_4:+19210564 None:intergenic
TATACTGAATCAAATCTTGG+AGG 0.514232 5_4:+19208275 None:intergenic
CTATTGGCCCATAAAATATG+AGG 0.517423 5_4:-19208246 Msa0842220:exon
ACAATAATATCTCTCAAAGA+AGG 0.522945 5_4:+19210303 None:intergenic
TTATTGTAGGAGGAACCATC+AGG 0.526435 5_4:+19208298 None:intergenic
GAAAGAACTAGTAAGGAGAG+AGG 0.530175 5_4:-19208637 Msa0842220:CDS
TAATAGTAGGTTTGTAAGTG+AGG 0.531816 5_4:-19208464 Msa0842220:CDS
CATAAGAAACGTGCCAGGCA+TGG 0.537902 5_4:-19209124 Msa0842220:CDS
ACGAATTTGGGAGAGAATTG+GGG 0.540729 5_4:+19208957 None:intergenic
ATCTTGGAGGTTATTGTAGG+AGG 0.543778 5_4:+19208288 None:intergenic
GTATTGAGGTGGTGGTGAAG+TGG 0.552097 5_4:+19208904 None:intergenic
AGAATCGAGCCATGTCATGC+AGG 0.553167 5_4:+19208825 None:intergenic
CAAGCATCACTTAAAGGCAA+TGG 0.555557 5_4:-19209012 Msa0842220:CDS
CGCATCATAAGAAACGTGCC+AGG 0.561151 5_4:-19209129 Msa0842220:CDS
TTCCCCAAACTCTACACTGT+TGG 0.565818 5_4:-19208928 Msa0842220:CDS
ATTTATAGGAGACGAGGACA+TGG 0.568194 5_4:-19209154 Msa0842220:intron
GAATTCTACTTTAGAGAGTG+TGG 0.575911 5_4:-19208536 Msa0842220:CDS
TTATATTATGGTGAACAAGA+AGG 0.577043 5_4:-19208377 Msa0842220:CDS
AGAACTAATAAAAGAACTTG+AGG 0.581885 5_4:-19208659 Msa0842220:CDS
TTTGGAGTGGGCTCCACAAG+AGG 0.583012 5_4:-19208608 Msa0842220:CDS
TGTGACAAAACTTCCTCTTG+TGG 0.586898 5_4:+19208595 None:intergenic
CATGGCCTTGTGCTGGACAT+GGG 0.589394 5_4:+19210565 None:intergenic
TATTGAGGTGGTGGTGAAGT+GGG 0.589759 5_4:+19208905 None:intergenic
TGGATAGAACCTGCATGACA+TGG 0.591199 5_4:-19208834 Msa0842220:CDS
GTCTTCCCATGTCCAGCACA+AGG 0.596744 5_4:-19210570 Msa0842220:CDS
ACATATACAACTGACTTCAA+CGG 0.597249 5_4:+19208799 None:intergenic
TCCAAGAGTGTAAATCCTGA+TGG 0.602064 5_4:-19208313 Msa0842220:CDS
TTTAGTTTATCGAAGATGAG+TGG 0.602955 5_4:-19208032 Msa0842220:three_prime_UTR
AAAATCTGCTACTAAAATGG+CGG 0.603184 5_4:-19208344 Msa0842220:CDS
TCAAACTAATGAGTCTGTTG+TGG 0.611017 5_4:+19210466 None:intergenic
GGCCAACAGTGTAGAGTTTG+GGG 0.621309 5_4:+19208926 None:intergenic
CTTACCATACATATTTATGG+AGG 0.622125 5_4:+19210326 None:intergenic
TATTATGGTGAACAAGAAGG+AGG 0.626325 5_4:-19208374 Msa0842220:CDS
CAGCAGCCAAATCAGTAGCA+AGG 0.634571 5_4:+19210235 None:intergenic
ATATGAAAGATGTTTGTGAT+CGG 0.639488 5_4:-19208423 Msa0842220:CDS
TTGTTTGATGTACCGAAACG+TGG 0.645855 5_4:+19209075 None:intergenic
TGTTTAATTTATAGGAGACG+AGG 0.652256 5_4:-19209160 Msa0842220:intron
GTGGGTGATTAGACCAAACA+TGG 0.685305 5_4:-19208692 Msa0842220:CDS
CATGGGAAGACTAACACATG+TGG 0.769505 5_4:+19210582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAATCAAGAAATTA+GGG + chr5_4:19208626-19208645 None:intergenic 10.0%
!! AATAATTAAATCAAGAAATT+AGG + chr5_4:19208627-19208646 None:intergenic 10.0%
!! AGATAAGTTTAAATAAAATA+AGG + chr5_4:19209189-19209208 None:intergenic 10.0%
!! ATTAAGTAAAAAAAATAGAA+AGG + chr5_4:19209418-19209437 None:intergenic 10.0%
!! TAATTAAATCAAGAAATTAG+GGG + chr5_4:19208625-19208644 None:intergenic 15.0%
!! TTAATTATTATACATATGCA+AGG - chr5_4:19208638-19208657 Msa0842220:CDS 15.0%
!! ACTACATAAATTATATACTT+TGG + chr5_4:19208664-19208683 None:intergenic 15.0%
!! ATATTGAGAAAATACTTAAT+TGG - chr5_4:19208811-19208830 Msa0842220:CDS 15.0%
!! TATTGAGAAAATACTTAATT+GGG - chr5_4:19208812-19208831 Msa0842220:CDS 15.0%
!!! ACTTATCTTTAATTTTATGA+TGG - chr5_4:19209201-19209220 Msa0842220:intron 15.0%
!! TTATTAGATAAAACTTATGT+AGG + chr5_4:19209329-19209348 None:intergenic 15.0%
!!! AAACTTTATCTAAAACAATA+TGG + chr5_4:19209612-19209631 None:intergenic 15.0%
!! AAATTGAGATTGTTGAAAAA+TGG - chr5_4:19208045-19208064 Msa0842220:three_prime_UTR 20.0%
!!! ATAAGTTGCATTATTTTAGA+TGG - chr5_4:19208385-19208404 Msa0842220:CDS 20.0%
!! TTTAAATAAAATAAGGCATG+TGG + chr5_4:19209182-19209201 None:intergenic 20.0%
!!! GTTTTATCTAATAAAAGAGT+AGG - chr5_4:19209335-19209354 Msa0842220:intron 20.0%
!! TATAACTCATATTAGAATTG+TGG + chr5_4:19209462-19209481 None:intergenic 20.0%
!! GAATATGGTGAATTATATTA+TGG - chr5_4:19210266-19210285 Msa0842220:CDS 20.0%
!! TTATATACTGAATCAAATCT+TGG + chr5_4:19210386-19210405 None:intergenic 20.0%
!! AAGATTTGATTCAGTATATA+AGG - chr5_4:19210385-19210404 Msa0842220:CDS 20.0%
!!! AAATATGAGAAGTTTTTAGT+AGG + chr5_4:19210451-19210470 None:intergenic 20.0%
!!! CTTATTTTGAAAATCAGAGA+TGG + chr5_4:19208266-19208285 None:intergenic 25.0%
!! CATCTCTGATTTTCAAAATA+AGG - chr5_4:19208264-19208283 Msa0842220:CDS 25.0%
! ATTTCCTCCATAAATATGTA+TGG - chr5_4:19208325-19208344 Msa0842220:CDS 25.0%
! ACAATAATATCTCTCAAAGA+AGG + chr5_4:19208355-19208374 None:intergenic 25.0%
!!! ATTATTTTAGATGGAGGTTT+TGG - chr5_4:19208394-19208413 Msa0842220:CDS 25.0%
!! ATGAAATATACTTTTGTGTG+TGG - chr5_4:19208932-19208951 Msa0842220:CDS 25.0%
!! TGAAATATACTTTTGTGTGT+GGG - chr5_4:19208933-19208952 Msa0842220:CDS 25.0%
! TAAGACTTTGTAAAAGAGAT+TGG - chr5_4:19209065-19209084 Msa0842220:CDS 25.0%
! AAGACTTTGTAAAAGAGATT+GGG - chr5_4:19209066-19209085 Msa0842220:CDS 25.0%
! AGCTTATTGAAATATGACAT+AGG + chr5_4:19209131-19209150 None:intergenic 25.0%
!! AGAAAGGTGTATAAAATAAG+AGG + chr5_4:19209402-19209421 None:intergenic 25.0%
!! GTTCTGGTTGTTTAATTTAT+AGG - chr5_4:19209487-19209506 Msa0842220:intron 25.0%
!!! TTGTTTTTTTCATGGTATTG+AGG + chr5_4:19209768-19209787 None:intergenic 25.0%
!!! TGATGATGTTGTTTTTTTCA+TGG + chr5_4:19209776-19209795 None:intergenic 25.0%
! AGAACTAATAAAAGAACTTG+AGG - chr5_4:19209996-19210015 Msa0842220:intron 25.0%
! ATATGAAAGATGTTTGTGAT+CGG - chr5_4:19210232-19210251 Msa0842220:CDS 25.0%
! TTATATTATGGTGAACAAGA+AGG - chr5_4:19210278-19210297 Msa0842220:CDS 25.0%
! TTCAAAATCTGCTACTAAAA+TGG - chr5_4:19210308-19210327 Msa0842220:CDS 25.0%
! ATTCAGTATATAAGGTCTAT+TGG - chr5_4:19210393-19210412 Msa0842220:CDS 25.0%
! AAATACATACAAAAACATCG+AGG - chr5_4:19210509-19210528 Msa0842220:CDS 25.0%
! AATACATACAAAAACATCGA+GGG - chr5_4:19210510-19210529 Msa0842220:CDS 25.0%
CTTACCATACATATTTATGG+AGG + chr5_4:19208332-19208351 None:intergenic 30.0%
AGGCTTACCATACATATTTA+TGG + chr5_4:19208335-19208354 None:intergenic 30.0%
!!! AGTTGCATTATTTTAGATGG+AGG - chr5_4:19208388-19208407 Msa0842220:CDS 30.0%
! TGTTTAATTTATAGGAGACG+AGG - chr5_4:19209495-19209514 Msa0842220:intron 30.0%
TTTCGGTACATCAAACAAAA+TGG - chr5_4:19209585-19209604 Msa0842220:intron 30.0%
!!! TTTTTTTCATGGTATTGAGG+TGG + chr5_4:19209765-19209784 None:intergenic 30.0%
! TCTATCCACTTTGAAGAAAT+TGG + chr5_4:19209809-19209828 None:intergenic 30.0%
! ACATATACAACTGACTTCAA+CGG + chr5_4:19209859-19209878 None:intergenic 30.0%
! TCAGTTGTATATGTTAGCTT+TGG - chr5_4:19209865-19209884 Msa0842220:intron 30.0%
! GAGAAGAAATACTTGAGTTT+TGG - chr5_4:19209908-19209927 Msa0842220:intron 30.0%
ACAGCAAAAAATCATTCTTG+TGG - chr5_4:19209944-19209963 Msa0842220:intron 30.0%
CAGCAAAAAATCATTCTTGT+GGG - chr5_4:19209945-19209964 Msa0842220:intron 30.0%
! TCTTTTTCTTGTACCATGTT+TGG + chr5_4:19209979-19209998 None:intergenic 30.0%
AAATAAGGCCAACAAATCAT+AGG + chr5_4:19210156-19210175 None:intergenic 30.0%
AGTGGTTGATCAGAAAAATA+AGG + chr5_4:19210171-19210190 None:intergenic 30.0%
CTTACAAACCTACTATTAAG+TGG + chr5_4:19210189-19210208 None:intergenic 30.0%
TAATAGTAGGTTTGTAAGTG+AGG - chr5_4:19210191-19210210 Msa0842220:CDS 30.0%
AAAATCTGCTACTAAAATGG+CGG - chr5_4:19210311-19210330 Msa0842220:CDS 30.0%
TATACTGAATCAAATCTTGG+AGG + chr5_4:19210383-19210402 None:intergenic 30.0%
!! TTTTTAGTAGGAGAATGGAA+GGG + chr5_4:19210439-19210458 None:intergenic 30.0%
!!! AGAAGTTTTTAGTAGGAGAA+TGG + chr5_4:19210444-19210463 None:intergenic 30.0%
! TTTAGTTTATCGAAGATGAG+TGG - chr5_4:19210623-19210642 Msa0842220:five_prime_UTR 30.0%
TCAAACTAATGAGTCTGTTG+TGG + chr5_4:19208192-19208211 None:intergenic 35.0%
! TGGTCTTGAATTGAAGCTTA+GGG + chr5_4:19208246-19208265 None:intergenic 35.0%
! ATGGTCTTGAATTGAAGCTT+AGG + chr5_4:19208247-19208266 None:intergenic 35.0%
! ACAATGTTTTCTCCAAATCC+AGG + chr5_4:19208298-19208317 None:intergenic 35.0%
! CAAACTGCTCTTAGAGTTTT+TGG - chr5_4:19208686-19208705 Msa0842220:CDS 35.0%
TTACTCTGAGCAATCTATGT+GGG - chr5_4:19209263-19209282 Msa0842220:intron 35.0%
TATGAGTTATATGCGTGTTC+TGG - chr5_4:19209471-19209490 Msa0842220:intron 35.0%
ATTGCCTTTAAGTGATGCTT+GGG + chr5_4:19209644-19209663 None:intergenic 35.0%
CAACTCCAATTTCTTCAAAG+TGG - chr5_4:19209801-19209820 Msa0842220:intron 35.0%
TTCTTCTCTTGTCATTGTTG+TGG + chr5_4:19209896-19209915 None:intergenic 35.0%
!! GAAATACTTGAGTTTTGGCA+CGG - chr5_4:19209913-19209932 Msa0842220:intron 35.0%
ACTTGAGGAAAGAACTAGTA+AGG - chr5_4:19210011-19210030 Msa0842220:intron 35.0%
!! TAAGGAGAGAGGTTTGATTT+TGG - chr5_4:19210029-19210048 Msa0842220:intron 35.0%
!! CATTTTTGACACATAGTGGA+TGG - chr5_4:19210097-19210116 Msa0842220:intron 35.0%
! GAATTCTACTTTAGAGAGTG+TGG - chr5_4:19210119-19210138 Msa0842220:intron 35.0%
CTGATCAACCACTTAATAGT+AGG - chr5_4:19210178-19210197 Msa0842220:CDS 35.0%
TCGGAATGTTGTTGAGAATA+TGG - chr5_4:19210251-19210270 Msa0842220:CDS 35.0%
TATTATGGTGAACAAGAAGG+AGG - chr5_4:19210281-19210300 Msa0842220:CDS 35.0%
CAAATCTTGGAGGTTATTGT+AGG + chr5_4:19210373-19210392 None:intergenic 35.0%
CTATTGGCCCATAAAATATG+AGG - chr5_4:19210409-19210428 Msa0842220:CDS 35.0%
! TTTTAGTAGGAGAATGGAAG+GGG + chr5_4:19210438-19210457 None:intergenic 35.0%
!!! GTTTTTAGTAGGAGAATGGA+AGG + chr5_4:19210440-19210459 None:intergenic 35.0%
! GCTTGAGCATTGTGTTTACA+TGG + chr5_4:19208111-19208130 None:intergenic 40.0%
TGTGGATGTACTCAGTGTTT+AGG + chr5_4:19208174-19208193 None:intergenic 40.0%
!! CAAAATAAGGAGAAGCATCC+TGG - chr5_4:19208277-19208296 Msa0842220:CDS 40.0%
GTGCGTAGTATACCTCTAAT+GGG + chr5_4:19208547-19208566 None:intergenic 40.0%
AGTGCGTAGTATACCTCTAA+TGG + chr5_4:19208548-19208567 None:intergenic 40.0%
ACTTGTACGTTAGATCCGTT+TGG - chr5_4:19209008-19209027 Msa0842220:CDS 40.0%
TACGTTAGATCCGTTTGGAT+TGG - chr5_4:19209013-19209032 Msa0842220:CDS 40.0%
AAGGCATGTGGAATGAGAAA+AGG + chr5_4:19209170-19209189 None:intergenic 40.0%
CTTACTCTGAGCAATCTATG+TGG - chr5_4:19209262-19209281 Msa0842220:intron 40.0%
! GTATAAAATAAGAGGAGCGC+TGG + chr5_4:19209394-19209413 None:intergenic 40.0%
ATTTATAGGAGACGAGGACA+TGG - chr5_4:19209501-19209520 Msa0842220:intron 40.0%
TGTAGAGATCTTCCACGTTT+CGG - chr5_4:19209568-19209587 Msa0842220:intron 40.0%
TTGTTTGATGTACCGAAACG+TGG + chr5_4:19209583-19209602 None:intergenic 40.0%
CTAACCCAAGCATCACTTAA+AGG - chr5_4:19209637-19209656 Msa0842220:intron 40.0%
CATTGCCTTTAAGTGATGCT+TGG + chr5_4:19209645-19209664 None:intergenic 40.0%
CAAGCATCACTTAAAGGCAA+TGG - chr5_4:19209643-19209662 Msa0842220:intron 40.0%
ACGAATTTGGGAGAGAATTG+GGG + chr5_4:19209701-19209720 None:intergenic 40.0%
GACGAATTTGGGAGAGAATT+GGG + chr5_4:19209702-19209721 None:intergenic 40.0%
AGACGAATTTGGGAGAGAAT+TGG + chr5_4:19209703-19209722 None:intergenic 40.0%
!! TTTTCATGGTATTGAGGTGG+TGG + chr5_4:19209762-19209781 None:intergenic 40.0%
GAAAGAACTAGTAAGGAGAG+AGG - chr5_4:19210018-19210037 Msa0842220:intron 40.0%
!! AGAGAGGTTTGATTTTGGAG+TGG - chr5_4:19210034-19210053 Msa0842220:intron 40.0%
!!! GAGAGGTTTGATTTTGGAGT+GGG - chr5_4:19210035-19210054 Msa0842220:intron 40.0%
TGTGACAAAACTTCCTCTTG+TGG + chr5_4:19210063-19210082 None:intergenic 40.0%
!! AGAGGAAGTTTTGTCACACA+AGG - chr5_4:19210065-19210084 Msa0842220:intron 40.0%
! GTTTTGTCACACAAGGCAAT+TGG - chr5_4:19210072-19210091 Msa0842220:intron 40.0%
! GGTGCATTTTTGACACATAG+TGG - chr5_4:19210093-19210112 Msa0842220:intron 40.0%
! ACTTTAGAGAGTGTGGTTTG+TGG - chr5_4:19210126-19210145 Msa0842220:CDS 40.0%
GTAGGTTTGTAAGTGAGGTT+TGG - chr5_4:19210196-19210215 Msa0842220:CDS 40.0%
!! TGCTACTAAAATGGCGGATT+TGG - chr5_4:19210317-19210336 Msa0842220:CDS 40.0%
! TCCAAGAGTGTAAATCCTGA+TGG - chr5_4:19210342-19210361 Msa0842220:CDS 40.0%
ACCATCAGGATTTACACTCT+TGG + chr5_4:19210346-19210365 None:intergenic 40.0%
TTATTGTAGGAGGAACCATC+AGG + chr5_4:19210360-19210379 None:intergenic 40.0%
ATCTTGGAGGTTATTGTAGG+AGG + chr5_4:19210370-19210389 None:intergenic 40.0%
! GGGGAAGCCTCATATTTTAT+GGG + chr5_4:19210419-19210438 None:intergenic 40.0%
! AGGGGAAGCCTCATATTTTA+TGG + chr5_4:19210420-19210439 None:intergenic 40.0%
CATACAAAAACATCGAGGGA+CGG - chr5_4:19210514-19210533 Msa0842220:CDS 40.0%
CATGGGAAGACTAACACATG+TGG + chr5_4:19208076-19208095 None:intergenic 45.0%
!! AAGGAGAAGCATCCTGGATT+TGG - chr5_4:19208283-19208302 Msa0842220:CDS 45.0%
! TGGTGACCTTGCTACTGATT+TGG - chr5_4:19208414-19208433 Msa0842220:CDS 45.0%
!! ACTGATTTGGCTGCTGAGTT+TGG - chr5_4:19208427-19208446 Msa0842220:CDS 45.0%
!! CTGATTTGGCTGCTGAGTTT+GGG - chr5_4:19208428-19208447 Msa0842220:CDS 45.0%
TTTCTGTATGCCCAAGCTCT+TGG - chr5_4:19208501-19208520 Msa0842220:CDS 45.0%
TGCAACGAGATTCCCATTAG+AGG - chr5_4:19208532-19208551 Msa0842220:CDS 45.0%
GCAAGCTAAGCCAATCCAAA+CGG + chr5_4:19209026-19209045 None:intergenic 45.0%
CGAATTATGTTCTCCATGCC+TGG + chr5_4:19209547-19209566 None:intergenic 45.0%
TTCCCCAAACTCTACACTGT+TGG - chr5_4:19209727-19209746 Msa0842220:intron 45.0%
! TATTGAGGTGGTGGTGAAGT+GGG + chr5_4:19209753-19209772 None:intergenic 45.0%
TGGATAGAACCTGCATGACA+TGG - chr5_4:19209821-19209840 Msa0842220:intron 45.0%
GTGGGTGATTAGACCAAACA+TGG - chr5_4:19209963-19209982 Msa0842220:intron 45.0%
! GTGGTGTGCCTATGATTTGT+TGG - chr5_4:19210145-19210164 Msa0842220:CDS 45.0%
GTAAGTGAGGTTTGGAAGCT+TGG - chr5_4:19210204-19210223 Msa0842220:CDS 45.0%
TGAGGTTTGGAAGCTTGGAT+TGG - chr5_4:19210209-19210228 Msa0842220:CDS 45.0%
!! GTGTTTACATGGCCTTGTGC+TGG + chr5_4:19208100-19208119 None:intergenic 50.0%
CAGCAGCCAAATCAGTAGCA+AGG + chr5_4:19208423-19208442 None:intergenic 50.0%
TATGCCCAAGCTCTTGGACT+TGG - chr5_4:19208507-19208526 Msa0842220:CDS 50.0%
CACTCCAAGTCCAAGAGCTT+GGG + chr5_4:19208514-19208533 None:intergenic 50.0%
!! TTGGATTGGCTTAGCTTGCG+TGG - chr5_4:19209027-19209046 Msa0842220:CDS 50.0%
!! TGGATTGGCTTAGCTTGCGT+GGG - chr5_4:19209028-19209047 Msa0842220:CDS 50.0%
GAAAAGGCAAAGCTCGCACT+AGG + chr5_4:19209154-19209173 None:intergenic 50.0%
CGCATCATAAGAAACGTGCC+AGG - chr5_4:19209526-19209545 Msa0842220:intron 50.0%
CATAAGAAACGTGCCAGGCA+TGG - chr5_4:19209531-19209550 Msa0842220:intron 50.0%
GGGGAAGTGGAGACGAATTT+GGG + chr5_4:19209713-19209732 None:intergenic 50.0%
TGGGGAAGTGGAGACGAATT+TGG + chr5_4:19209714-19209733 None:intergenic 50.0%
CAGTGTAGAGTTTGGGGAAG+TGG + chr5_4:19209726-19209745 None:intergenic 50.0%
GGCCAACAGTGTAGAGTTTG+GGG + chr5_4:19209732-19209751 None:intergenic 50.0%
GGGCCAACAGTGTAGAGTTT+GGG + chr5_4:19209733-19209752 None:intergenic 50.0%
TGGGCCAACAGTGTAGAGTT+TGG + chr5_4:19209734-19209753 None:intergenic 50.0%
! GTATTGAGGTGGTGGTGAAG+TGG + chr5_4:19209754-19209773 None:intergenic 50.0%
AGAATCGAGCCATGTCATGC+AGG + chr5_4:19209833-19209852 None:intergenic 50.0%
GTCTTCCCATGTCCAGCACA+AGG - chr5_4:19208085-19208104 Msa0842220:three_prime_UTR 55.0%
!! CATGGCCTTGTGCTGGACAT+GGG + chr5_4:19208093-19208112 None:intergenic 55.0%
!! ACATGGCCTTGTGCTGGACA+TGG + chr5_4:19208094-19208113 None:intergenic 55.0%
CTGTTGCTGCTAGTAGCGTC+TGG - chr5_4:19208473-19208492 Msa0842220:CDS 55.0%
GCACTCCAAGTCCAAGAGCT+TGG + chr5_4:19208515-19208534 None:intergenic 55.0%
! TTTGGAGTGGGCTCCACAAG+AGG - chr5_4:19210047-19210066 Msa0842220:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19208025 19210652 19208025 ID=Msa0842220;Name=Msa0842220
chr5_4 mRNA 19208025 19210652 19208025 ID=Msa0842220-mRNA-1;Parent=Msa0842220;Name=Msa0842220-mRNA-1;_AED=0.26;_eAED=0.26;_QI=39|1|1|1|1|1|2|230|467
chr5_4 exon 19208025 19209168 19208025 ID=Msa0842220-mRNA-1:exon:8033;Parent=Msa0842220-mRNA-1
chr5_4 exon 19210124 19210652 19210124 ID=Msa0842220-mRNA-1:exon:8032;Parent=Msa0842220-mRNA-1
chr5_4 five_prime_UTR 19210614 19210652 19210614 ID=Msa0842220-mRNA-1:five_prime_utr;Parent=Msa0842220-mRNA-1
chr5_4 CDS 19210124 19210613 19210124 ID=Msa0842220-mRNA-1:cds;Parent=Msa0842220-mRNA-1
chr5_4 CDS 19208255 19209168 19208255 ID=Msa0842220-mRNA-1:cds;Parent=Msa0842220-mRNA-1
chr5_4 three_prime_UTR 19208025 19208254 19208025 ID=Msa0842220-mRNA-1:three_prime_utr;Parent=Msa0842220-mRNA-1
Gene Sequence

>Msa0842220

ATGGAAACACCACATGTGTTAGTCTTCCCATGTCCAGCACAAGGCCATGTAAACACAATGCTCAAGCTAGCTGAACTTCTTTTAATTCAAAATCTTCACATAACATTCCTAAACACTGAGTACATCCACAACAGACTCATTAGTTTGAATGATGATGTTAAATCAATTTCACAATGTTACCCTAAGCTTCAATTCAAGACCATCTCTGATTTTCAAAATAAGGAGAAGCATCCTGGATTTGGAGAAAACATTGTAGATGTAATTTCCTCCATAAATATGTATGGTAAGCCTTCTTTGAGAGATATTATTGTCTCTGAGAAAATAAGTTGCATTATTTTAGATGGAGGTTTTGGTGACCTTGCTACTGATTTGGCTGCTGAGTTTGGGATACAATTGATACATTTTCGTACTGTTGCTGCTAGTAGCGTCTGGATTTATTTCTGTATGCCCAAGCTCTTGGACTTGGAGTGCAACGAGATTCCCATTAGAGGAGACGAGGACATGGATCGCATCATAAGAAACGTGCCAGGCATGGAGAACATAATTCGATGTAGAGATCTTCCACGTTTCGGTACATCAAACAAAATGGACCATATTGTTTTAGATAAAGTTTTACAACTAACCCAAGCATCACTTAAAGGCAATGGAGTAATACTCAACACATTTGAAGATCTAGAGTCCCCAATTCTCTCCCAAATTCGTCTCCACTTCCCCAAACTCTACACTGTTGGCCCACTTCACCACCACCTCAATACCATGAAAAAAACAACATCATCATCTTTCAACTCCAATTTCTTCAAAGTGGATAGAACCTGCATGACATGGCTCGATTCTCAACCGTTGAAGTCAGTTGTATATGTTAGCTTTGGAAGCACCACAACAATGACAAGAGAAGAAATACTTGAGTTTTGGCACGGTTTGATGAACAGCAAAAAATCATTCTTGTGGGTGATTAGACCAAACATGGTACAAGAAAAAGAACTAATAAAAGAACTTGAGGAAAGAACTAGTAAGGAGAGAGGTTTGATTTTGGAGTGGGCTCCACAAGAGGAAGTTTTGTCACACAAGGCAATTGGTGCATTTTTGACACATAGTGGATGGAATTCTACTTTAGAGAGTGTGGTTTGTGGTGTGCCTATGATTTGTTGGCCTTATTTTTCTGATCAACCACTTAATAGTAGGTTTGTAAGTGAGGTTTGGAAGCTTGGATTGGATATGAAAGATGTTTGTGATCGGAATGTTGTTGAGAATATGGTGAATTATATTATGGTGAACAAGAAGGAGGAGTTTTCAAAATCTGCTACTAAAATGGCGGATTTGGCTTCCAAGAGTGTAAATCCTGATGGTTCCTCCTACAATAACCTCCAAGATTTGATTCAGTATATAAGGTCTATTGGCCCATAA

Protein sequence

>Msa0842220

METPHVLVFPCPAQGHVNTMLKLAELLLIQNLHITFLNTEYIHNRLISLNDDVKSISQCYPKLQFKTISDFQNKEKHPGFGENIVDVISSINMYGKPSLRDIIVSEKISCIILDGGFGDLATDLAAEFGIQLIHFRTVAASSVWIYFCMPKLLDLECNEIPIRGDEDMDRIIRNVPGMENIIRCRDLPRFGTSNKMDHIVLDKVLQLTQASLKGNGVILNTFEDLESPILSQIRLHFPKLYTVGPLHHHLNTMKKTTSSSFNSNFFKVDRTCMTWLDSQPLKSVVYVSFGSTTTMTREEILEFWHGLMNSKKSFLWVIRPNMVQEKELIKELEERTSKERGLILEWAPQEEVLSHKAIGAFLTHSGWNSTLESVVCGVPMICWPYFSDQPLNSRFVSEVWKLGLDMKDVCDRNVVENMVNYIMVNKKEEFSKSATKMADLASKSVNPDGSSYNNLQDLIQYIRSIGP*