Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272200 | sp|Q9M1C2|CH101_ARATH | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.41e-55 | 171 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272200 | G7LDE7 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 4.65e-91 | 269 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001420 | Msa1272200 | 0.808390 | 3.170964e-50 | -8.615850e-47 |
Msa0001540 | Msa1272200 | 0.864190 | 1.452914e-64 | -8.615850e-47 |
Msa0024070 | Msa1272200 | 0.809421 | 1.907663e-50 | -8.615850e-47 |
Msa0025830 | Msa1272200 | 0.821424 | 4.066958e-53 | -8.615850e-47 |
Msa0037300 | Msa1272200 | 0.835981 | 1.222923e-56 | -8.615850e-47 |
Msa0046800 | Msa1272200 | 0.803480 | 3.417602e-49 | -8.615850e-47 |
Msa0047400 | Msa1272200 | 0.812880 | 3.393304e-51 | -8.615850e-47 |
Msa0049990 | Msa1272200 | 0.831567 | 1.551934e-55 | -8.615850e-47 |
Msa0056370 | Msa1272200 | 0.802598 | 5.200400e-49 | -8.615850e-47 |
Msa0073220 | Msa1272200 | 0.836976 | 6.823925e-57 | -8.615850e-47 |
Msa0074910 | Msa1272200 | 0.806489 | 8.023690e-50 | -8.615850e-47 |
Msa0075080 | Msa1272200 | 0.804059 | 2.590737e-49 | -8.615850e-47 |
Msa0076550 | Msa1272200 | 0.816063 | 6.708975e-52 | -8.615850e-47 |
Msa0077910 | Msa1272200 | 0.818856 | 1.575520e-52 | -8.615850e-47 |
Msa0081300 | Msa1272200 | 0.806137 | 9.519922e-50 | -8.615850e-47 |
Msa0112290 | Msa1272200 | 0.805214 | 1.487466e-49 | -8.615850e-47 |
Msa0115410 | Msa1272200 | 0.800016 | 1.756371e-48 | -8.615850e-47 |
Msa0619870 | Msa1272200 | 0.827589 | 1.438962e-54 | -8.615850e-47 |
Msa0620050 | Msa1272200 | 0.810189 | 1.304703e-50 | -8.615850e-47 |
Msa0623470 | Msa1272200 | 0.809901 | 1.504448e-50 | -8.615850e-47 |
Msa0624700 | Msa1272200 | 0.871600 | 6.041872e-67 | -8.615850e-47 |
Msa0653090 | Msa1272200 | 0.820478 | 6.714648e-53 | -8.615850e-47 |
Msa0661490 | Msa1272200 | 0.820898 | 5.376393e-53 | -8.615850e-47 |
Msa0681910 | Msa1272200 | 0.812945 | 3.283012e-51 | -8.615850e-47 |
Msa0682460 | Msa1272200 | 0.816539 | 5.250246e-52 | -8.615850e-47 |
Msa0689880 | Msa1272200 | 0.801100 | 1.055750e-48 | -8.615850e-47 |
Msa0695470 | Msa1272200 | 0.845389 | 4.186956e-59 | -8.615850e-47 |
Msa0705250 | Msa1272200 | 0.814627 | 1.398947e-51 | -8.615850e-47 |
Msa0706450 | Msa1272200 | 0.802453 | 5.570521e-49 | -8.615850e-47 |
Msa0706490 | Msa1272200 | 0.861382 | 1.066728e-63 | -8.615850e-47 |
Msa0720380 | Msa1272200 | 0.804283 | 2.327013e-49 | -8.615850e-47 |
Msa0738950 | Msa1272200 | 0.800639 | 1.311513e-48 | -8.615850e-47 |
Msa0748890 | Msa1272200 | 0.827977 | 1.161057e-54 | -8.615850e-47 |
Msa0749940 | Msa1272200 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
Msa0752290 | Msa1272200 | 0.822609 | 2.161749e-53 | -8.615850e-47 |
Msa0773080 | Msa1272200 | 0.819754 | 9.836826e-53 | -8.615850e-47 |
Msa0790180 | Msa1272200 | 0.801758 | 7.742312e-49 | -8.615850e-47 |
Msa0790380 | Msa1272200 | 0.814724 | 1.331796e-51 | -8.615850e-47 |
Msa0795850 | Msa1272200 | 0.802673 | 5.017048e-49 | -8.615850e-47 |
Msa0796840 | Msa1272200 | 0.818044 | 2.407246e-52 | -8.615850e-47 |
Msa0810370 | Msa1272200 | 0.800850 | 1.187601e-48 | -8.615850e-47 |
Msa0832270 | Msa1272200 | 0.831897 | 1.286749e-55 | -8.615850e-47 |
Msa0833980 | Msa1272200 | 0.806085 | 9.761168e-50 | -8.615850e-47 |
Msa0121420 | Msa1272200 | 0.837223 | 5.901106e-57 | -8.615850e-47 |
Msa0125800 | Msa1272200 | 0.811507 | 6.762889e-51 | -8.615850e-47 |
Msa0131440 | Msa1272200 | 0.849199 | 3.769323e-60 | -8.615850e-47 |
Msa0131640 | Msa1272200 | 0.804702 | 1.902572e-49 | -8.615850e-47 |
Msa0141770 | Msa1272200 | 0.824393 | 8.272222e-54 | -8.615850e-47 |
Msa0147070 | Msa1272200 | 0.803406 | 3.540280e-49 | -8.615850e-47 |
Msa0151790 | Msa1272200 | 0.820066 | 8.344775e-53 | -8.615850e-47 |
Msa0155550 | Msa1272200 | 0.820233 | 7.644354e-53 | -8.615850e-47 |
Msa0164530 | Msa1272200 | 0.864748 | 9.724868e-65 | -8.615850e-47 |
Msa0166060 | Msa1272200 | 0.831565 | 1.553230e-55 | -8.615850e-47 |
Msa0170440 | Msa1272200 | 0.817744 | 2.813316e-52 | -8.615850e-47 |
Msa0174510 | Msa1272200 | 0.808095 | 3.664029e-50 | -8.615850e-47 |
Msa0178020 | Msa1272200 | 0.831076 | 2.048744e-55 | -8.615850e-47 |
Msa0179200 | Msa1272200 | 0.806620 | 7.528052e-50 | -8.615850e-47 |
Msa0181380 | Msa1272200 | 0.822500 | 2.291887e-53 | -8.615850e-47 |
Msa0182610 | Msa1272200 | 0.828192 | 1.030357e-54 | -8.615850e-47 |
Msa0188670 | Msa1272200 | 0.818786 | 1.634723e-52 | -8.615850e-47 |
Msa0217300 | Msa1272200 | 0.822794 | 1.957207e-53 | -8.615850e-47 |
Msa0234930 | Msa1272200 | 0.835311 | 1.806788e-56 | -8.615850e-47 |
Msa1235140 | Msa1272200 | 0.876767 | 1.074432e-68 | -8.615850e-47 |
Msa1244380 | Msa1272200 | 0.815867 | 7.416993e-52 | -8.615850e-47 |
Msa1250500 | Msa1272200 | 0.813274 | 2.781069e-51 | -8.615850e-47 |
Msa1258940 | Msa1272200 | 0.813516 | 2.460486e-51 | -8.615850e-47 |
Msa1264670 | Msa1272200 | 0.818320 | 2.085050e-52 | -8.615850e-47 |
Msa1267560 | Msa1272200 | 0.873952 | 9.863047e-68 | -8.615850e-47 |
Msa1269550 | Msa1272200 | 0.838282 | 3.154830e-57 | -8.615850e-47 |
Msa1272200 | Msa1279700 | 0.803199 | 3.907012e-49 | -8.615850e-47 |
Msa1272200 | Msa1294940 | 0.855535 | 5.910086e-62 | -8.615850e-47 |
Msa1272200 | Msa1297500 | 0.827827 | 1.261930e-54 | -8.615850e-47 |
Msa1272200 | Msa1297560 | 0.825968 | 3.509707e-54 | -8.615850e-47 |
Msa1272200 | Msa1298180 | 0.827293 | 1.694624e-54 | -8.615850e-47 |
Msa1272200 | Msa1302750 | 0.827408 | 1.590752e-54 | -8.615850e-47 |
Msa1272200 | Msa1303810 | 0.816667 | 4.913544e-52 | -8.615850e-47 |
Msa1272200 | Msa1305650 | 0.849715 | 2.705944e-60 | -8.615850e-47 |
Msa1272200 | Msa1324940 | 0.807755 | 4.330007e-50 | -8.615850e-47 |
Msa1272200 | Msa1334690 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
Msa1272200 | Msa1337950 | 0.803389 | 3.568958e-49 | -8.615850e-47 |
Msa1272200 | Msa1349720 | 0.814631 | 1.396165e-51 | -8.615850e-47 |
Msa1272200 | Msa1363080 | 0.803132 | 4.033973e-49 | -8.615850e-47 |
Msa1272200 | Msa1367560 | 0.822918 | 1.831839e-53 | -8.615850e-47 |
Msa1272200 | Msa1372680 | 0.813913 | 2.012201e-51 | -8.615850e-47 |
Msa1272200 | Msa1375120 | 0.828043 | 1.119123e-54 | -8.615850e-47 |
Msa1272200 | Msa1375570 | 0.801857 | 7.386641e-49 | -8.615850e-47 |
Msa1272200 | Msa1375600 | 0.865219 | 6.919546e-65 | -8.615850e-47 |
Msa1272200 | Msa1376560 | 0.869028 | 4.208012e-66 | -8.615850e-47 |
Msa1272200 | Msa1376590 | 0.812285 | 4.577421e-51 | -8.615850e-47 |
Msa1272200 | Msa1376680 | 0.840878 | 6.669862e-58 | -8.615850e-47 |
Msa1272200 | Msa1388010 | 0.821398 | 4.125028e-53 | -8.615850e-47 |
Msa1272200 | Msa1391430 | 0.815840 | 7.520215e-52 | -8.615850e-47 |
Msa1272200 | Msa1398840 | 0.839564 | 1.469578e-57 | -8.615850e-47 |
Msa1272200 | Msa1400830 | 0.804161 | 2.467355e-49 | -8.615850e-47 |
Msa1272200 | Msa1403590 | 0.816171 | 6.345393e-52 | -8.615850e-47 |
Msa1272200 | Msa1411390 | 0.829890 | 3.996686e-55 | -8.615850e-47 |
Msa1272200 | Msa1411690 | 0.895945 | 5.913883e-76 | -8.615850e-47 |
Msa1272200 | Msa1412750 | 0.823302 | 1.490283e-53 | -8.615850e-47 |
Msa1272200 | Msa1415250 | 0.817244 | 3.646417e-52 | -8.615850e-47 |
Msa1272200 | Msa1418600 | 0.839228 | 1.796624e-57 | -8.615850e-47 |
Msa1272200 | Msa1419760 | 0.808831 | 2.552959e-50 | -8.615850e-47 |
Msa1272200 | Msa1426880 | 0.813307 | 2.735397e-51 | -8.615850e-47 |
Msa1272200 | Msa1429390 | 0.819452 | 1.153007e-52 | -8.615850e-47 |
Msa1272200 | Msa1430010 | 0.811617 | 6.400607e-51 | -8.615850e-47 |
Msa1272200 | Msa1437320 | 0.835373 | 1.743082e-56 | -8.615850e-47 |
Msa1272200 | Msa1438380 | 0.820989 | 5.124134e-53 | -8.615850e-47 |
Msa1272200 | Msa1439880 | 0.832837 | 7.526633e-56 | -8.615850e-47 |
Msa1272200 | Msa1443280 | 0.813109 | 3.022542e-51 | -8.615850e-47 |
Msa1272200 | Msa1444750 | 0.801797 | 7.600762e-49 | -8.615850e-47 |
Msa1272200 | Msa1455560 | 0.865595 | 5.270806e-65 | -8.615850e-47 |
Msa1272200 | Msa1456390 | 0.849810 | 2.546414e-60 | -8.615850e-47 |
Msa1272200 | Msa1460650 | 0.812299 | 4.546785e-51 | -8.615850e-47 |
Msa0367370 | Msa1272200 | 0.802430 | 5.630751e-49 | -8.615850e-47 |
Msa0369770 | Msa1272200 | 0.828210 | 1.020324e-54 | -8.615850e-47 |
Msa0371050 | Msa1272200 | 0.802971 | 4.355800e-49 | -8.615850e-47 |
Msa0376760 | Msa1272200 | 0.819881 | 9.198990e-53 | -8.615850e-47 |
Msa0379450 | Msa1272200 | 0.857029 | 2.155697e-62 | -8.615850e-47 |
Msa0380270 | Msa1272200 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
Msa0380390 | Msa1272200 | 0.845973 | 2.906395e-59 | -8.615850e-47 |
Msa0380440 | Msa1272200 | 0.861435 | 1.028417e-63 | -8.615850e-47 |
Msa0383110 | Msa1272200 | 0.824729 | 6.893597e-54 | -8.615850e-47 |
Msa0399180 | Msa1272200 | 0.812233 | 4.699634e-51 | -8.615850e-47 |
Msa0412470 | Msa1272200 | 0.821929 | 3.108504e-53 | -8.615850e-47 |
Msa0415050 | Msa1272200 | 0.808734 | 2.677822e-50 | -8.615850e-47 |
Msa0415060 | Msa1272200 | 0.854756 | 9.959673e-62 | -8.615850e-47 |
Msa0415860 | Msa1272200 | 0.817975 | 2.494454e-52 | -8.615850e-47 |
Msa0417140 | Msa1272200 | 0.818830 | 1.597469e-52 | -8.615850e-47 |
Msa0419030 | Msa1272200 | 0.811443 | 6.984535e-51 | -8.615850e-47 |
Msa0420300 | Msa1272200 | 0.831791 | 1.366483e-55 | -8.615850e-47 |
Msa0423820 | Msa1272200 | 0.850287 | 1.871951e-60 | -8.615850e-47 |
Msa0425150 | Msa1272200 | 0.823573 | 1.288040e-53 | -8.615850e-47 |
Msa0429490 | Msa1272200 | 0.802700 | 4.954396e-49 | -8.615850e-47 |
Msa0429560 | Msa1272200 | 0.835340 | 1.776603e-56 | -8.615850e-47 |
Msa0436310 | Msa1272200 | 0.818823 | 1.602739e-52 | -8.615850e-47 |
Msa0438990 | Msa1272200 | 0.836844 | 7.375558e-57 | -8.615850e-47 |
Msa0455200 | Msa1272200 | 0.819454 | 1.151483e-52 | -8.615850e-47 |
Msa0463980 | Msa1272200 | 0.834691 | 2.588693e-56 | -8.615850e-47 |
Msa0471700 | Msa1272200 | 0.817213 | 3.705302e-52 | -8.615850e-47 |
Msa0473010 | Msa1272200 | 0.813646 | 2.303997e-51 | -8.615850e-47 |
Msa0475130 | Msa1272200 | 0.825866 | 3.710319e-54 | -8.615850e-47 |
Msa0480040 | Msa1272200 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
Msa1013510 | Msa1272200 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
Msa1013560 | Msa1272200 | 0.837727 | 4.383570e-57 | -8.615850e-47 |
Msa1032410 | Msa1272200 | 0.808080 | 3.691625e-50 | -8.615850e-47 |
Msa1033120 | Msa1272200 | 0.849706 | 2.721329e-60 | -8.615850e-47 |
Msa1052800 | Msa1272200 | 0.805872 | 1.082097e-49 | -8.615850e-47 |
Msa1054480 | Msa1272200 | 0.811718 | 6.084906e-51 | -8.615850e-47 |
Msa1054620 | Msa1272200 | 0.812617 | 3.873435e-51 | -8.615850e-47 |
Msa1067430 | Msa1272200 | 0.809163 | 2.167043e-50 | -8.615850e-47 |
Msa1074730 | Msa1272200 | 0.898790 | 3.755693e-77 | -8.615850e-47 |
Msa1079630 | Msa1272200 | 0.800372 | 1.486307e-48 | -8.615850e-47 |
Msa1084150 | Msa1272200 | 0.837823 | 4.141715e-57 | -8.615850e-47 |
Msa0255100 | Msa1272200 | 0.829027 | 6.474544e-55 | -8.615850e-47 |
Msa0256590 | Msa1272200 | 0.818937 | 1.510451e-52 | -8.615850e-47 |
Msa0258410 | Msa1272200 | 0.816422 | 5.577056e-52 | -8.615850e-47 |
Msa0259390 | Msa1272200 | 0.826245 | 3.015076e-54 | -8.615850e-47 |
Msa0269790 | Msa1272200 | 0.807264 | 5.502519e-50 | -8.615850e-47 |
Msa0270230 | Msa1272200 | 0.816929 | 4.291671e-52 | -8.615850e-47 |
Msa0273270 | Msa1272200 | 0.833747 | 4.465902e-56 | -8.615850e-47 |
Msa0273550 | Msa1272200 | 0.826972 | 2.023169e-54 | -8.615850e-47 |
Msa0280120 | Msa1272200 | 0.803214 | 3.879656e-49 | -8.615850e-47 |
Msa0280140 | Msa1272200 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
Msa0282070 | Msa1272200 | 0.810050 | 1.397847e-50 | -8.615850e-47 |
Msa0285130 | Msa1272200 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
Msa0288350 | Msa1272200 | 0.800996 | 1.109065e-48 | -8.615850e-47 |
Msa0294170 | Msa1272200 | 0.857562 | 1.500245e-62 | -8.615850e-47 |
Msa0295730 | Msa1272200 | 0.840893 | 6.609249e-58 | -8.615850e-47 |
Msa0296490 | Msa1272200 | 0.834264 | 3.313691e-56 | -8.615850e-47 |
Msa0307820 | Msa1272200 | 0.819405 | 1.181562e-52 | -8.615850e-47 |
Msa0308430 | Msa1272200 | 0.825799 | 3.848183e-54 | -8.615850e-47 |
Msa0313550 | Msa1272200 | 0.835185 | 1.944027e-56 | -8.615850e-47 |
Msa0334780 | Msa1272200 | 0.806375 | 8.481847e-50 | -8.615850e-47 |
Msa0335740 | Msa1272200 | 0.835860 | 1.312097e-56 | -8.615850e-47 |
Msa0362840 | Msa1272200 | 0.829247 | 5.728916e-55 | -8.615850e-47 |
Msa1110350 | Msa1272200 | 0.894641 | 2.036321e-75 | -8.615850e-47 |
Msa1118390 | Msa1272200 | 0.834874 | 2.328741e-56 | -8.615850e-47 |
Msa1126310 | Msa1272200 | 0.841933 | 3.518386e-58 | -8.615850e-47 |
Msa1127510 | Msa1272200 | 0.838815 | 2.298171e-57 | -8.615850e-47 |
Msa1128200 | Msa1272200 | 0.802787 | 4.753931e-49 | -8.615850e-47 |
Msa1131300 | Msa1272200 | 0.806536 | 7.843170e-50 | -8.615850e-47 |
Msa1149960 | Msa1272200 | 0.821533 | 3.838711e-53 | -8.615850e-47 |
Msa1154020 | Msa1272200 | 0.895410 | 9.845266e-76 | -8.615850e-47 |
Msa1167160 | Msa1272200 | 0.817697 | 2.883110e-52 | -8.615850e-47 |
Msa1171030 | Msa1272200 | 0.811942 | 5.440006e-51 | -8.615850e-47 |
Msa1177300 | Msa1272200 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
Msa1190510 | Msa1272200 | 0.808473 | 3.044083e-50 | -8.615850e-47 |
Msa1202170 | Msa1272200 | 0.868714 | 5.316646e-66 | -8.615850e-47 |
Msa1206500 | Msa1272200 | 0.820414 | 6.946416e-53 | -8.615850e-47 |
Msa1208630 | Msa1272200 | 0.871010 | 9.459349e-67 | -8.615850e-47 |
Msa1208750 | Msa1272200 | 0.819842 | 9.390623e-53 | -8.615850e-47 |
Msa1221580 | Msa1272200 | 0.811340 | 7.353769e-51 | -8.615850e-47 |
Msa1222020 | Msa1272200 | 0.804530 | 2.067066e-49 | -8.615850e-47 |
Msa0485350 | Msa1272200 | 0.807950 | 3.934978e-50 | -8.615850e-47 |
Msa0503120 | Msa1272200 | 0.830918 | 2.240388e-55 | -8.615850e-47 |
Msa0504740 | Msa1272200 | 0.824636 | 7.252018e-54 | -8.615850e-47 |
Msa0506740 | Msa1272200 | 0.835178 | 1.951741e-56 | -8.615850e-47 |
Msa0509530 | Msa1272200 | 0.829089 | 6.255371e-55 | -8.615850e-47 |
Msa0510540 | Msa1272200 | 0.824803 | 6.621848e-54 | -8.615850e-47 |
Msa0515730 | Msa1272200 | 0.868865 | 4.750349e-66 | -8.615850e-47 |
Msa0524470 | Msa1272200 | 0.823714 | 1.193835e-53 | -8.615850e-47 |
Msa0524570 | Msa1272200 | 0.822141 | 2.776644e-53 | -8.615850e-47 |
Msa0557770 | Msa1272200 | 0.825496 | 4.541696e-54 | -8.615850e-47 |
Msa0572880 | Msa1272200 | 0.830414 | 2.976465e-55 | -8.615850e-47 |
Msa0580360 | Msa1272200 | 0.801372 | 9.287312e-49 | -8.615850e-47 |
Msa0583180 | Msa1272200 | 0.969138 | 1.101362e-129 | -8.615850e-47 |
Msa0862960 | Msa1272200 | 0.810369 | 1.193000e-50 | -8.615850e-47 |
Msa0866650 | Msa1272200 | 0.815883 | 7.358976e-52 | -8.615850e-47 |
Msa0879820 | Msa1272200 | 0.833230 | 6.008238e-56 | -8.615850e-47 |
Msa0926090 | Msa1272200 | 0.806943 | 6.435101e-50 | -8.615850e-47 |
Msa0934800 | Msa1272200 | 0.817383 | 3.393819e-52 | -8.615850e-47 |
Msa0969050 | Msa1272200 | 0.857429 | 1.641720e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272200 | MtrunA17_Chr8g0336931 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 8.96e-95 | 269 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272200 | AT3G60210.1 | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.50e-56 | 171 |
Msa1272200 | AT2G44650.1 | 58.273 | 139 | 54 | 2 | 1 | 135 | 1 | 139 | 2.79e-53 | 164 |
Find 59 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAAGAATGGATTGGAATT+TGG | 0.115284 | 8_3:-5692362 | None:intergenic |
CAAAGAATGGATTGGAATTT+GGG | 0.188113 | 8_3:-5692361 | None:intergenic |
CAGCCTCGGCACCAACATTT+AGG | 0.253224 | 8_3:-5693746 | None:intergenic |
TGAATACATTATTATCAAAA+AGG | 0.306931 | 8_3:-5695957 | None:intergenic |
TATTCTTTGTTGACATTCCT+TGG | 0.313698 | 8_3:+5696033 | Msa1272200:three_prime_UTR |
GTATTCATGGCAAATGTATT+AGG | 0.331892 | 8_3:+5695973 | Msa1272200:three_prime_UTR |
TAAGAAATGGGAACCCTCTA+AGG | 0.340240 | 8_3:+5692643 | Msa1272200:CDS |
AGGTTGTGCCTCAGGCTGAT+AGG | 0.348377 | 8_3:+5692760 | Msa1272200:intron |
CATTAAATCAAGTGACTTGT+TGG | 0.348829 | 8_3:+5695887 | Msa1272200:CDS |
AGAAATTGGAATAACCTTAG+AGG | 0.365531 | 8_3:-5692657 | None:intergenic |
TTAATGCAATTGCTAAGAAA+TGG | 0.381136 | 8_3:+5692630 | Msa1272200:CDS |
GGCCGTCGTTGAGTAGGGTT+TGG | 0.386350 | 8_3:+5695908 | Msa1272200:exon |
ATTCTTTGTTGACATTCCTT+GGG | 0.391711 | 8_3:+5696034 | Msa1272200:three_prime_UTR |
AGTGACGAAATGATACCTTT+AGG | 0.394240 | 8_3:+5696190 | Msa1272200:three_prime_UTR |
GAATTATACTTGGGAGTCTC+TGG | 0.395066 | 8_3:-5692491 | None:intergenic |
CTCAAATTTAACAGCTGACT+TGG | 0.404760 | 8_3:-5693615 | None:intergenic |
TGGATTGCAGGTTGTGCCTC+AGG | 0.408276 | 8_3:+5692752 | Msa1272200:intron |
CACCGACATAAATGCTTATG+AGG | 0.413729 | 8_3:+5695568 | Msa1272200:CDS |
CTTGTTGGCCGTCGTTGAGT+AGG | 0.414558 | 8_3:+5695902 | Msa1272200:CDS |
TTGTGAAGGAAGGGAGTTGT+TGG | 0.416342 | 8_3:-5692444 | None:intergenic |
TTTGAAGAGGAACTCTTTGA+AGG | 0.442390 | 8_3:+5692607 | Msa1272200:CDS |
TTATCTCTTATCCATTATCA+TGG | 0.443311 | 8_3:+5692401 | Msa1272200:exon |
AAATGTGGAAGCCATGATAA+TGG | 0.443462 | 8_3:-5692412 | None:intergenic |
TTAACATTAATCAAAATCCT+TGG | 0.446289 | 8_3:+5696239 | Msa1272200:three_prime_UTR |
AATGAACTGTTATCAATCAT+TGG | 0.459294 | 8_3:+5696001 | Msa1272200:three_prime_UTR |
TAATGCAATTGCTAAGAAAT+GGG | 0.473150 | 8_3:+5692631 | Msa1272200:CDS |
TGATACCTTTAGGCTGGAGT+TGG | 0.477447 | 8_3:+5696200 | Msa1272200:three_prime_UTR |
GGTTGTGCCTCAGGCTGATA+GGG | 0.488435 | 8_3:+5692761 | Msa1272200:intron |
GTGAACTGAACAACAAAGAA+TGG | 0.490758 | 8_3:-5692374 | None:intergenic |
TTGTTTCAGGTCCTAAATGT+TGG | 0.499652 | 8_3:+5693735 | Msa1272200:intron |
TTGTTGGCCGTCGTTGAGTA+GGG | 0.502146 | 8_3:+5695903 | Msa1272200:CDS |
CTGAACAACAAAGAATGGAT+TGG | 0.502168 | 8_3:-5692369 | None:intergenic |
AAATTTGAGCGATATCTTGT+GGG | 0.511491 | 8_3:+5693629 | Msa1272200:CDS |
GAAATTGGAATAACCTTAGA+GGG | 0.512239 | 8_3:-5692656 | None:intergenic |
TAAATTTGAGCGATATCTTG+TGG | 0.516085 | 8_3:+5693628 | Msa1272200:CDS |
TAGGGTTCTTATTCGTCTTG+AGG | 0.524050 | 8_3:+5692779 | Msa1272200:CDS |
ACGAAATGATACCTTTAGGC+TGG | 0.526719 | 8_3:+5696194 | Msa1272200:three_prime_UTR |
TTCTTTGTTGACATTCCTTG+GGG | 0.545808 | 8_3:+5696035 | Msa1272200:three_prime_UTR |
TCAAATTTAACAGCTGACTT+GGG | 0.548423 | 8_3:-5693614 | None:intergenic |
GGTTTCCAACTCCAGCCTAA+AGG | 0.549480 | 8_3:-5696205 | None:intergenic |
TGTTGGTATGGTGAGAAATG+TGG | 0.554797 | 8_3:-5692427 | None:intergenic |
GAGGCTGAAAATGTAAAAGC+TGG | 0.554966 | 8_3:+5693762 | Msa1272200:CDS |
TATACTTGGGAGTCTCTGGT+TGG | 0.556109 | 8_3:-5692487 | None:intergenic |
AGGTATCATTTCGTCACTGA+AGG | 0.572999 | 8_3:-5696185 | None:intergenic |
TGTCAAGATTGAAGACAAGC+GGG | 0.586481 | 8_3:-5692281 | None:intergenic |
CTGGTTGGAGAAAGAAGCGG+TGG | 0.589531 | 8_3:-5692472 | None:intergenic |
TTTGGGCAGAAAACTGCTGG+TGG | 0.594539 | 8_3:+5693581 | Msa1272200:intron |
AAGGAAGGGAGTTGTTGGTA+TGG | 0.597282 | 8_3:-5692439 | None:intergenic |
AAATGTAAAAGCTGGCTCGA+AGG | 0.601859 | 8_3:+5693770 | Msa1272200:CDS |
AAAGAATGGATTGGAATTTG+GGG | 0.602324 | 8_3:-5692360 | None:intergenic |
ATGTCAAGATTGAAGACAAG+CGG | 0.603037 | 8_3:-5692282 | None:intergenic |
GGTCCTAAATGTTGGTGCCG+AGG | 0.613958 | 8_3:+5693743 | Msa1272200:intron |
CTGCTCTTTGTCTCACAAAG+CGG | 0.654255 | 8_3:-5695931 | None:intergenic |
GGTTGGAGAAAGAAGCGGTG+GGG | 0.659685 | 8_3:-5692470 | None:intergenic |
AACCTCATAAGCATTTATGT+CGG | 0.663411 | 8_3:-5695570 | None:intergenic |
GGCCAAACCCTACTCAACGA+CGG | 0.678555 | 8_3:-5695910 | None:intergenic |
TGGTTGGAGAAAGAAGCGGT+GGG | 0.681233 | 8_3:-5692471 | None:intergenic |
ATAAGAACCCTATCAGCCTG+AGG | 0.720606 | 8_3:-5692768 | None:intergenic |
TCTCTGGTTGGAGAAAGAAG+CGG | 0.732198 | 8_3:-5692475 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTAATT+TGG | + | chr8_3:5692844-5692863 | Msa1272200:intron | 0.0% |
!!! | TTTTTTTTTTTTTTTAATTT+GGG | + | chr8_3:5692845-5692864 | Msa1272200:intron | 0.0% |
!!! | TATTAACTTTTTTTTCATTT+GGG | + | chr8_3:5692573-5692592 | Msa1272200:intron | 10.0% |
!!! | GTATTAACTTTTTTTTCATT+TGG | + | chr8_3:5692572-5692591 | Msa1272200:intron | 15.0% |
!!! | TATGATTTTTGGTTATTTTT+TGG | + | chr8_3:5692732-5692751 | Msa1272200:intron | 15.0% |
!! | ATAACAATAAGTTATATGTA+TGG | - | chr8_3:5693412-5693431 | None:intergenic | 15.0% |
!!! | TGATTGTGAATATAATTTTT+TGG | + | chr8_3:5693563-5693582 | Msa1272200:intron | 15.0% |
!!! | GATTGTGAATATAATTTTTT+GGG | + | chr8_3:5693564-5693583 | Msa1272200:intron | 15.0% |
!! | ATATTTGTACTTATGTATAA+AGG | + | chr8_3:5695605-5695624 | Msa1272200:intron | 15.0% |
!! | TTAAATGAATTAATCAATGT+CGG | + | chr8_3:5695639-5695658 | Msa1272200:intron | 15.0% |
!! | TGAATACATTATTATCAAAA+AGG | - | chr8_3:5695960-5695979 | None:intergenic | 15.0% |
!!! | TTTTGATAATAATGTATTCA+TGG | + | chr8_3:5695960-5695979 | Msa1272200:three_prime_UTR | 15.0% |
!! | TGGATAATAAACCTAAAAAA+GGG | + | chr8_3:5692317-5692336 | Msa1272200:five_prime_UTR | 20.0% |
!! | CTTCGTTAAAATGAATAAAA+GGG | - | chr8_3:5692553-5692572 | None:intergenic | 20.0% |
!! | ACTTCGTTAAAATGAATAAA+AGG | - | chr8_3:5692554-5692573 | None:intergenic | 20.0% |
!!! | TTGTTTTTGCATATGATTTT+TGG | + | chr8_3:5692721-5692740 | Msa1272200:intron | 20.0% |
!!! | AATTTTTTTGGATAAGATTG+TGG | - | chr8_3:5692821-5692840 | None:intergenic | 20.0% |
!! | TTGTTTATTTACTATGAAAG+AGG | + | chr8_3:5693797-5693816 | Msa1272200:intron | 20.0% |
!! | TTACTAATTAATTAGTTGTG+AGG | + | chr8_3:5694618-5694637 | Msa1272200:intron | 20.0% |
!! | TTTGTAATATGAGATATTTC+AGG | + | chr8_3:5694785-5694804 | Msa1272200:intron | 20.0% |
!!! | AATCATTATGGTAATTTGTT+GGG | + | chr8_3:5694869-5694888 | Msa1272200:intron | 20.0% |
!! | TAGTTCAAATGATGAAATAA+AGG | + | chr8_3:5695418-5695437 | Msa1272200:intron | 20.0% |
!! | AAATAAAGGAAAATAGTTAG+TGG | + | chr8_3:5695432-5695451 | Msa1272200:intron | 20.0% |
!!! | AATCATAATTATTCTTTTGC+AGG | + | chr8_3:5695538-5695557 | Msa1272200:intron | 20.0% |
!!! | AATTCTAATTTGTAACTCAA+CGG | + | chr8_3:5695783-5695802 | Msa1272200:intron | 20.0% |
!! | TTAATGTTAAAAAGAGAGAA+GGG | - | chr8_3:5696229-5696248 | None:intergenic | 20.0% |
!! | ATTAATGTTAAAAAGAGAGA+AGG | - | chr8_3:5696230-5696249 | None:intergenic | 20.0% |
! | GTGGATAATAAACCTAAAAA+AGG | + | chr8_3:5692316-5692335 | Msa1272200:five_prime_UTR | 25.0% |
! | TTATCTCTTATCCATTATCA+TGG | + | chr8_3:5692401-5692420 | Msa1272200:exon | 25.0% |
! | GTAGAAGAAGAATTATACTT+GGG | - | chr8_3:5692503-5692522 | None:intergenic | 25.0% |
! | AGTAGAAGAAGAATTATACT+TGG | - | chr8_3:5692504-5692523 | None:intergenic | 25.0% |
! | TTAATGCAATTGCTAAGAAA+TGG | + | chr8_3:5692630-5692649 | Msa1272200:CDS | 25.0% |
! | TAATGCAATTGCTAAGAAAT+GGG | + | chr8_3:5692631-5692650 | Msa1272200:CDS | 25.0% |
! | CAGAAAATGAAAAGAGAAAT+TGG | - | chr8_3:5692674-5692693 | None:intergenic | 25.0% |
!! | CAATTTCTCTTTTCATTTTC+TGG | + | chr8_3:5692672-5692691 | Msa1272200:intron | 25.0% |
!!! | TCTGGTTTTTTGTTTTTGAA+AGG | + | chr8_3:5692690-5692709 | Msa1272200:intron | 25.0% |
! | GTGAATGTGATTTAACTATT+TGG | + | chr8_3:5693453-5693472 | Msa1272200:intron | 25.0% |
! | TGTAATTGGCACTTATAAAT+TGG | + | chr8_3:5693532-5693551 | Msa1272200:intron | 25.0% |
! | ATTATATTCACAATCATGCA+TGG | - | chr8_3:5693559-5693578 | None:intergenic | 25.0% |
! | AGTAAGTATACATATTGCAT+AGG | + | chr8_3:5693655-5693674 | Msa1272200:intron | 25.0% |
! | TTCAGATGTAAAACAACATA+AGG | - | chr8_3:5693683-5693702 | None:intergenic | 25.0% |
!! | TTTCCTTTTGTATTTGTTTC+AGG | + | chr8_3:5693722-5693741 | Msa1272200:intron | 25.0% |
!! | TTAAGTTGCTATTGTAAACT+GGG | - | chr8_3:5694069-5694088 | None:intergenic | 25.0% |
!!! | TTTAAGTTGCTATTGTAAAC+TGG | - | chr8_3:5694070-5694089 | None:intergenic | 25.0% |
! | TAAATTACCGATATTCAATG+TGG | + | chr8_3:5694086-5694105 | Msa1272200:intron | 25.0% |
!! | ACTTTTAGCAATGAAAGTTT+AGG | + | chr8_3:5694438-5694457 | Msa1272200:intron | 25.0% |
! | AGACATTAGTTCAATCATTA+TGG | + | chr8_3:5694857-5694876 | Msa1272200:intron | 25.0% |
!! | CAATCATTATGGTAATTTGT+TGG | + | chr8_3:5694868-5694887 | Msa1272200:intron | 25.0% |
!!! | ATAACACAATTTTGAAGAAG+CGG | - | chr8_3:5695039-5695058 | None:intergenic | 25.0% |
! | TTATTTGTACAGTATCTATC+TGG | + | chr8_3:5695081-5695100 | Msa1272200:intron | 25.0% |
! | TATGAACAAGTTCATAACTT+GGG | - | chr8_3:5695147-5695166 | None:intergenic | 25.0% |
! | TTATGAACAAGTTCATAACT+TGG | - | chr8_3:5695148-5695167 | None:intergenic | 25.0% |
!! | TTGTGTCTAAAGAAATTTTC+AGG | + | chr8_3:5695190-5695209 | Msa1272200:intron | 25.0% |
!!! | CATTTTTTAAGAACCACATT+CGG | + | chr8_3:5695236-5695255 | Msa1272200:intron | 25.0% |
!!! | ATTTTTTAAGAACCACATTC+GGG | + | chr8_3:5695237-5695256 | Msa1272200:intron | 25.0% |
!! | GTCTAAACTTGATAATATAG+AGG | + | chr8_3:5695327-5695346 | Msa1272200:intron | 25.0% |
!!! | TATTGGTCTAATTGTTTTTC+AGG | + | chr8_3:5695833-5695852 | Msa1272200:intron | 25.0% |
! | AATGAACTGTTATCAATCAT+TGG | + | chr8_3:5696001-5696020 | Msa1272200:three_prime_UTR | 25.0% |
!!! | GTGTTGTTAAACCCTTTTTT+AGG | - | chr8_3:5692331-5692350 | None:intergenic | 30.0% |
!! | AAAGAATGGATTGGAATTTG+GGG | - | chr8_3:5692363-5692382 | None:intergenic | 30.0% |
!! | CAAAGAATGGATTGGAATTT+GGG | - | chr8_3:5692364-5692383 | None:intergenic | 30.0% |
!! | ACAAAGAATGGATTGGAATT+TGG | - | chr8_3:5692365-5692384 | None:intergenic | 30.0% |
GAAATTGGAATAACCTTAGA+GGG | - | chr8_3:5692659-5692678 | None:intergenic | 30.0% | |
AGAAATTGGAATAACCTTAG+AGG | - | chr8_3:5692660-5692679 | None:intergenic | 30.0% | |
!!! | TTGGTTATTTTTTGGATTGC+AGG | + | chr8_3:5692740-5692759 | Msa1272200:intron | 30.0% |
!! | CTTGTTATTGTTCCAATGTT+TGG | + | chr8_3:5692993-5693012 | Msa1272200:intron | 30.0% |
! | TGAATGTTGGATTTGTTTGT+AGG | + | chr8_3:5693063-5693082 | Msa1272200:intron | 30.0% |
! | GAATGTTGGATTTGTTTGTA+GGG | + | chr8_3:5693064-5693083 | Msa1272200:intron | 30.0% |
AACACATCAAATTCATGACA+CGG | - | chr8_3:5693126-5693145 | None:intergenic | 30.0% | |
TGTCATGAATTTGATGTGTT+TGG | + | chr8_3:5693126-5693145 | Msa1272200:intron | 30.0% | |
AAAACTAAGCTGTATCACAT+TGG | + | chr8_3:5693168-5693187 | Msa1272200:intron | 30.0% | |
CAATGAGGATATATCAGATT+AGG | - | chr8_3:5693201-5693220 | None:intergenic | 30.0% | |
TGCAGTTATCTCGATAATAA+GGG | - | chr8_3:5693278-5693297 | None:intergenic | 30.0% | |
TTGCAGTTATCTCGATAATA+AGG | - | chr8_3:5693279-5693298 | None:intergenic | 30.0% | |
TACTCATAAGTCATGTAAGA+AGG | + | chr8_3:5693334-5693353 | Msa1272200:intron | 30.0% | |
! | ATGTAAGAAGGTATAGACTA+GGG | + | chr8_3:5693346-5693365 | Msa1272200:intron | 30.0% |
!! | ATTTTGCTATAATGTCCGTA+AGG | + | chr8_3:5693504-5693523 | Msa1272200:intron | 30.0% |
! | TCAAATTTAACAGCTGACTT+GGG | - | chr8_3:5693617-5693636 | None:intergenic | 30.0% |
TAAATTTGAGCGATATCTTG+TGG | + | chr8_3:5693628-5693647 | Msa1272200:CDS | 30.0% | |
AAATTTGAGCGATATCTTGT+GGG | + | chr8_3:5693629-5693648 | Msa1272200:CDS | 30.0% | |
TGCTTGCCATTGTAAAATTA+GGG | - | chr8_3:5693947-5693966 | None:intergenic | 30.0% | |
TTGCTTGCCATTGTAAAATT+AGG | - | chr8_3:5693948-5693967 | None:intergenic | 30.0% | |
TGACATAAATCCTAATCACA+AGG | + | chr8_3:5693978-5693997 | Msa1272200:intron | 30.0% | |
TTTCATTACCAATAACTCCA+GGG | - | chr8_3:5694024-5694043 | None:intergenic | 30.0% | |
ATTTCATTACCAATAACTCC+AGG | - | chr8_3:5694025-5694044 | None:intergenic | 30.0% | |
AATGAAAGTTTAGGTGTGTT+GGG | + | chr8_3:5694447-5694466 | Msa1272200:intron | 30.0% | |
CACACTTAAATATGATGAGA+AGG | + | chr8_3:5694595-5694614 | Msa1272200:intron | 30.0% | |
! | AATGTGATGCAACATTTTTG+AGG | + | chr8_3:5694810-5694829 | Msa1272200:intron | 30.0% |
!! | AATTTTGAAGAAGCGGATAA+GGG | - | chr8_3:5695032-5695051 | None:intergenic | 30.0% |
!!! | TGTTATTTTGCAACTCTGTT+TGG | + | chr8_3:5695053-5695072 | Msa1272200:intron | 30.0% |
TATAATAAGTATCCCGAATG+TGG | - | chr8_3:5695252-5695271 | None:intergenic | 30.0% | |
ACTCATTAATCAAATGACCA+TGG | + | chr8_3:5695278-5695297 | Msa1272200:intron | 30.0% | |
CAAAGTGATAATAGAAACCA+TGG | - | chr8_3:5695298-5695317 | None:intergenic | 30.0% | |
AACCTCATAAGCATTTATGT+CGG | - | chr8_3:5695573-5695592 | None:intergenic | 30.0% | |
! | TATCTGAAGAACAACTTTTG+TGG | + | chr8_3:5695674-5695693 | Msa1272200:intron | 30.0% |
! | ATCTGAAGAACAACTTTTGT+GGG | + | chr8_3:5695675-5695694 | Msa1272200:intron | 30.0% |
!!! | AATTGTTTTTCAGGTGGATT+TGG | + | chr8_3:5695842-5695861 | Msa1272200:intron | 30.0% |
!!! | ATTGTTTTTCAGGTGGATTT+GGG | + | chr8_3:5695843-5695862 | Msa1272200:intron | 30.0% |
! | CATTAAATCAAGTGACTTGT+TGG | + | chr8_3:5695887-5695906 | Msa1272200:CDS | 30.0% |
GTATTCATGGCAAATGTATT+AGG | + | chr8_3:5695973-5695992 | Msa1272200:three_prime_UTR | 30.0% | |
TATTCTTTGTTGACATTCCT+TGG | + | chr8_3:5696033-5696052 | Msa1272200:three_prime_UTR | 30.0% | |
ATTCTTTGTTGACATTCCTT+GGG | + | chr8_3:5696034-5696053 | Msa1272200:three_prime_UTR | 30.0% | |
!!! | TCTGCTTTTTTCAATATTGC+TGG | + | chr8_3:5696086-5696105 | Msa1272200:three_prime_UTR | 30.0% |
!!! | CTGCTTTTTTCAATATTGCT+GGG | + | chr8_3:5696087-5696106 | Msa1272200:three_prime_UTR | 30.0% |
ATGTCAAGATTGAAGACAAG+CGG | - | chr8_3:5692285-5692304 | None:intergenic | 35.0% | |
! | CTTGACATTTTGTGACTTTG+TGG | + | chr8_3:5692297-5692316 | Msa1272200:five_prime_UTR | 35.0% |
CTGAACAACAAAGAATGGAT+TGG | - | chr8_3:5692372-5692391 | None:intergenic | 35.0% | |
GTGAACTGAACAACAAAGAA+TGG | - | chr8_3:5692377-5692396 | None:intergenic | 35.0% | |
AAATGTGGAAGCCATGATAA+TGG | - | chr8_3:5692415-5692434 | None:intergenic | 35.0% | |
!!! | GGTATGTTTCAGTTTTGAAG+AGG | + | chr8_3:5692594-5692613 | Msa1272200:intron | 35.0% |
TTTGAAGAGGAACTCTTTGA+AGG | + | chr8_3:5692607-5692626 | Msa1272200:CDS | 35.0% | |
GCAGTCTTGAAATAATCACT+AGG | + | chr8_3:5693021-5693040 | Msa1272200:intron | 35.0% | |
CTAGGATAAGTTCAAACTGT+AGG | + | chr8_3:5693039-5693058 | Msa1272200:intron | 35.0% | |
! | GATTTGTTTGTAGGGATCAT+TGG | + | chr8_3:5693072-5693091 | Msa1272200:intron | 35.0% |
!! | GTTGTTTTGTCAGTGAAAAC+AGG | + | chr8_3:5693240-5693259 | Msa1272200:intron | 35.0% |
TCTCGATAATAAGGGAACAT+CGG | - | chr8_3:5693270-5693289 | None:intergenic | 35.0% | |
! | CATGTAAGAAGGTATAGACT+AGG | + | chr8_3:5693345-5693364 | Msa1272200:intron | 35.0% |
! | TCCGTAAGGTATTCTGTAAT+TGG | + | chr8_3:5693518-5693537 | Msa1272200:intron | 35.0% |
GCCAATTACAGAATACCTTA+CGG | - | chr8_3:5693522-5693541 | None:intergenic | 35.0% | |
CTCAAATTTAACAGCTGACT+TGG | - | chr8_3:5693618-5693637 | None:intergenic | 35.0% | |
GGACCTGAAACAAATACAAA+AGG | - | chr8_3:5693728-5693747 | None:intergenic | 35.0% | |
! | TTGTTTCAGGTCCTAAATGT+TGG | + | chr8_3:5693735-5693754 | Msa1272200:intron | 35.0% |
! | AGCTTTTACATTTTCAGCCT+CGG | - | chr8_3:5693763-5693782 | None:intergenic | 35.0% |
TGAAAGAGGTGAAGTAGAAA+AGG | + | chr8_3:5693811-5693830 | Msa1272200:intron | 35.0% | |
! | TAGTTGACTCAGATTCTGAA+AGG | + | chr8_3:5693918-5693937 | Msa1272200:intron | 35.0% |
! | AGGACACCCTAATTTTACAA+TGG | + | chr8_3:5693938-5693957 | Msa1272200:intron | 35.0% |
CTTGTTTGAACCTTGTGATT+AGG | - | chr8_3:5693991-5694010 | None:intergenic | 35.0% | |
! | TAAACTGGGAATTGGAGTTT+TGG | - | chr8_3:5694055-5694074 | None:intergenic | 35.0% |
TGCTATTGTAAACTGGGAAT+TGG | - | chr8_3:5694063-5694082 | None:intergenic | 35.0% | |
CCATAGACCACATTGAATAT+CGG | - | chr8_3:5694096-5694115 | None:intergenic | 35.0% | |
ATATTCAATGTGGTCTATGG+CGG | + | chr8_3:5694096-5694115 | Msa1272200:intron | 35.0% | |
TCAGCAGTGTTGTCAAATAT+CGG | - | chr8_3:5694262-5694281 | None:intergenic | 35.0% | |
ACCAATATTCCCAAATCTGT+TGG | + | chr8_3:5694290-5694309 | Msa1272200:intron | 35.0% | |
ACCAACAGATTTGGGAATAT+TGG | - | chr8_3:5694294-5694313 | None:intergenic | 35.0% | |
TCTAATCTAATCAGCCCAAA+AGG | - | chr8_3:5694400-5694419 | None:intergenic | 35.0% | |
CAATGAAAGTTTAGGTGTGT+TGG | + | chr8_3:5694446-5694465 | Msa1272200:intron | 35.0% | |
AAAATCATACGAGCACTAAG+TGG | + | chr8_3:5694901-5694920 | Msa1272200:intron | 35.0% | |
! | TGTTAGATCTTGCTATCACA+AGG | - | chr8_3:5694927-5694946 | None:intergenic | 35.0% |
GATAGCAAGATCTAACAACT+TGG | + | chr8_3:5694930-5694949 | Msa1272200:intron | 35.0% | |
! | AACTTGGAAGTCTCTTTTGT+TGG | + | chr8_3:5694946-5694965 | Msa1272200:intron | 35.0% |
! | ACTTGGAAGTCTCTTTTGTT+GGG | + | chr8_3:5694947-5694966 | Msa1272200:intron | 35.0% |
!! | CAATTTTGAAGAAGCGGATA+AGG | - | chr8_3:5695033-5695052 | None:intergenic | 35.0% |
! | TCCACATAGTTCTTAACTTG+TGG | + | chr8_3:5695104-5695123 | Msa1272200:intron | 35.0% |
TCCACAAGTTAAGAACTATG+TGG | - | chr8_3:5695108-5695127 | None:intergenic | 35.0% | |
AACAAGTTCATAACTTGGGA+AGG | - | chr8_3:5695143-5695162 | None:intergenic | 35.0% | |
TCACTTATTTGCATTCCATG+CGG | + | chr8_3:5695361-5695380 | Msa1272200:intron | 35.0% | |
! | GTATTTGAGCAAGTGCTATT+TGG | + | chr8_3:5695700-5695719 | Msa1272200:intron | 35.0% |
!!! | TGGTCTAATTGTTTTTCAGG+TGG | + | chr8_3:5695836-5695855 | Msa1272200:intron | 35.0% |
!!! | TTGTTTTTCAGGTGGATTTG+GGG | + | chr8_3:5695844-5695863 | Msa1272200:intron | 35.0% |
TTCTTTGTTGACATTCCTTG+GGG | + | chr8_3:5696035-5696054 | Msa1272200:three_prime_UTR | 35.0% | |
AGTGACGAAATGATACCTTT+AGG | + | chr8_3:5696190-5696209 | Msa1272200:three_prime_UTR | 35.0% | |
TGTCAAGATTGAAGACAAGC+GGG | - | chr8_3:5692284-5692303 | None:intergenic | 40.0% | |
TGTTGGTATGGTGAGAAATG+TGG | - | chr8_3:5692430-5692449 | None:intergenic | 40.0% | |
GAATTATACTTGGGAGTCTC+TGG | - | chr8_3:5692494-5692513 | None:intergenic | 40.0% | |
TAAGAAATGGGAACCCTCTA+AGG | + | chr8_3:5692643-5692662 | Msa1272200:CDS | 40.0% | |
TAGGGTTCTTATTCGTCTTG+AGG | + | chr8_3:5692779-5692798 | Msa1272200:CDS | 40.0% | |
TCAAACTGTAGGCTGAATGT+TGG | + | chr8_3:5693050-5693069 | Msa1272200:intron | 40.0% | |
TGACACGGTACAACATCAAA+CGG | - | chr8_3:5693111-5693130 | None:intergenic | 40.0% | |
ACTAAGCTGTATCACATTGG+TGG | + | chr8_3:5693171-5693190 | Msa1272200:intron | 40.0% | |
CAAGCTGATGACATTCAATG+AGG | - | chr8_3:5693216-5693235 | None:intergenic | 40.0% | |
CTCATTGAATGTCATCAGCT+TGG | + | chr8_3:5693214-5693233 | Msa1272200:intron | 40.0% | |
!!! | TTTTTTGGGCAGAAAACTGC+TGG | + | chr8_3:5693578-5693597 | Msa1272200:intron | 40.0% |
GAGGCTGAAAATGTAAAAGC+TGG | + | chr8_3:5693762-5693781 | Msa1272200:CDS | 40.0% | |
!! | AAATGTAAAAGCTGGCTCGA+AGG | + | chr8_3:5693770-5693789 | Msa1272200:CDS | 40.0% |
AAACAAGTAACCATGAACCC+TGG | + | chr8_3:5694004-5694023 | Msa1272200:intron | 40.0% | |
CCGATATTCAATGTGGTCTA+TGG | + | chr8_3:5694093-5694112 | Msa1272200:intron | 40.0% | |
CTGCCATATCTGCTGAAATT+GGG | + | chr8_3:5694194-5694213 | Msa1272200:intron | 40.0% | |
ATGCCCAATTTCAGCAGATA+TGG | - | chr8_3:5694200-5694219 | None:intergenic | 40.0% | |
ATATCTGCTGAAATTGGGCA+TGG | + | chr8_3:5694199-5694218 | Msa1272200:intron | 40.0% | |
! | AGATATCAGTGGGGGTTTTT+GGG | - | chr8_3:5694232-5694251 | None:intergenic | 40.0% |
GAGCTTCAACCAACAGATTT+GGG | - | chr8_3:5694302-5694321 | None:intergenic | 40.0% | |
TGAGCTTCAACCAACAGATT+TGG | - | chr8_3:5694303-5694322 | None:intergenic | 40.0% | |
! | TGTTGGTTGAAGCTCATAGA+TGG | + | chr8_3:5694307-5694326 | Msa1272200:intron | 40.0% |
CAAAGGTCTTCTGTTTGAGA+GGG | - | chr8_3:5694346-5694365 | None:intergenic | 40.0% | |
AGACCTTTGGACTTAAACGT+TGG | + | chr8_3:5694357-5694376 | Msa1272200:intron | 40.0% | |
TGTCCAACGTTTAAGTCCAA+AGG | - | chr8_3:5694363-5694382 | None:intergenic | 40.0% | |
ATCTAATCAGCCCAAAAGGT+GGG | - | chr8_3:5694396-5694415 | None:intergenic | 40.0% | |
AATCTAATCAGCCCAAAAGG+TGG | - | chr8_3:5694397-5694416 | None:intergenic | 40.0% | |
! | CTTGGAAGTCTCTTTTGTTG+GGG | + | chr8_3:5694948-5694967 | Msa1272200:intron | 40.0% |
ACACAAATTCGTCTGCTGAA+GGG | - | chr8_3:5695176-5695195 | None:intergenic | 40.0% | |
CACTTATTTGCATTCCATGC+GGG | + | chr8_3:5695362-5695381 | Msa1272200:intron | 40.0% | |
CACCGACATAAATGCTTATG+AGG | + | chr8_3:5695568-5695587 | Msa1272200:CDS | 40.0% | |
! | CTTTTCTCAAGAAAGCAGTG+TGG | - | chr8_3:5695752-5695771 | None:intergenic | 40.0% |
GCAAAATCAAAAACTCCCCA+AGG | - | chr8_3:5696053-5696072 | None:intergenic | 40.0% | |
AGGTATCATTTCGTCACTGA+AGG | - | chr8_3:5696188-5696207 | None:intergenic | 40.0% | |
ACGAAATGATACCTTTAGGC+TGG | + | chr8_3:5696194-5696213 | Msa1272200:three_prime_UTR | 40.0% | |
AAGGAAGGGAGTTGTTGGTA+TGG | - | chr8_3:5692442-5692461 | None:intergenic | 45.0% | |
TTGTGAAGGAAGGGAGTTGT+TGG | - | chr8_3:5692447-5692466 | None:intergenic | 45.0% | |
! | GTGGGGTTTTTGTGAAGGAA+GGG | - | chr8_3:5692456-5692475 | None:intergenic | 45.0% |
TCTCTGGTTGGAGAAAGAAG+CGG | - | chr8_3:5692478-5692497 | None:intergenic | 45.0% | |
TATACTTGGGAGTCTCTGGT+TGG | - | chr8_3:5692490-5692509 | None:intergenic | 45.0% | |
ATAAGAACCCTATCAGCCTG+AGG | - | chr8_3:5692771-5692790 | None:intergenic | 45.0% | |
AGACTGCAGACACCAAACAT+TGG | - | chr8_3:5693008-5693027 | None:intergenic | 45.0% | |
ACCATGAACCCTGGAGTTAT+TGG | + | chr8_3:5694013-5694032 | Msa1272200:intron | 45.0% | |
ACCAATAACTCCAGGGTTCA+TGG | - | chr8_3:5694017-5694036 | None:intergenic | 45.0% | |
GACGCCGTCATTTCAGATTA+CGG | + | chr8_3:5694162-5694181 | Msa1272200:intron | 45.0% | |
! | TCCGCCGTAATCTGAAATGA+CGG | - | chr8_3:5694169-5694188 | None:intergenic | 45.0% |
CCAATTTCAGCAGATATGGC+AGG | - | chr8_3:5694196-5694215 | None:intergenic | 45.0% | |
CCTGCCATATCTGCTGAAAT+TGG | + | chr8_3:5694193-5694212 | Msa1272200:intron | 45.0% | |
! | CAGATATCAGTGGGGGTTTT+TGG | - | chr8_3:5694233-5694252 | None:intergenic | 45.0% |
GTGTTGTCAAATATCGGCCA+TGG | - | chr8_3:5694256-5694275 | None:intergenic | 45.0% | |
CCAAAGGTCTTCTGTTTGAG+AGG | - | chr8_3:5694347-5694366 | None:intergenic | 45.0% | |
CCTCTCAAACAGAAGACCTT+TGG | + | chr8_3:5694344-5694363 | Msa1272200:intron | 45.0% | |
TAAACGTTGGACAATGCCAC+TGG | + | chr8_3:5694370-5694389 | Msa1272200:intron | 45.0% | |
TACACGTTCGTTGAGCCTTA+AGG | - | chr8_3:5694502-5694521 | None:intergenic | 45.0% | |
CCTAAGCTGCTCATAACACA+CGG | + | chr8_3:5694647-5694666 | Msa1272200:intron | 45.0% | |
! | AAGTCTCTTTTGTTGGGGTG+AGG | + | chr8_3:5694953-5694972 | Msa1272200:intron | 45.0% |
TTGTTGGGGTGAGGATTCAT+TGG | + | chr8_3:5694962-5694981 | Msa1272200:intron | 45.0% | |
GACACAAATTCGTCTGCTGA+AGG | - | chr8_3:5695177-5695196 | None:intergenic | 45.0% | |
TCTCAAGAAAGCAGTGTGGT+TGG | - | chr8_3:5695748-5695767 | None:intergenic | 45.0% | |
CTGCTCTTTGTCTCACAAAG+CGG | - | chr8_3:5695934-5695953 | None:intergenic | 45.0% | |
TGATACCTTTAGGCTGGAGT+TGG | + | chr8_3:5696200-5696219 | Msa1272200:three_prime_UTR | 45.0% | |
!!! | AAAAAAAAAACTAATTTTTT+TGG | - | chr8_3:5692833-5692852 | None:intergenic | 5.0% |
!! | TTCAAAAAAAAATTTAAATA+TGG | - | chr8_3:5695495-5695514 | None:intergenic | 5.0% |
!! | TTATGATTATAATTTAAATA+TGG | - | chr8_3:5695526-5695545 | None:intergenic | 5.0% |
!! | CATTAATAAATAATAAATAT+TGG | + | chr8_3:5695816-5695835 | Msa1272200:intron | 5.0% |
! | GGTGGGGTTTTTGTGAAGGA+AGG | - | chr8_3:5692457-5692476 | None:intergenic | 50.0% |
! | AAGCGGTGGGGTTTTTGTGA+AGG | - | chr8_3:5692461-5692480 | None:intergenic | 50.0% |
TGGTTGGAGAAAGAAGCGGT+GGG | - | chr8_3:5692474-5692493 | None:intergenic | 50.0% | |
TTTGGGCAGAAAACTGCTGG+TGG | + | chr8_3:5693581-5693600 | Msa1272200:intron | 50.0% | |
GCCGTCATTTCAGATTACGG+CGG | + | chr8_3:5694165-5694184 | Msa1272200:intron | 50.0% | |
TCTGCTGAAATTGGGCATGG+CGG | + | chr8_3:5694202-5694221 | Msa1272200:intron | 50.0% | |
AGTTTAGGTGTGTTGGGCTC+CGG | + | chr8_3:5694453-5694472 | Msa1272200:intron | 50.0% | |
GGCTCAACGAACGTGTACAA+CGG | + | chr8_3:5694505-5694524 | Msa1272200:intron | 50.0% | |
CCGTGTGTTATGAGCAGCTT+AGG | - | chr8_3:5694650-5694669 | None:intergenic | 50.0% | |
TTTGCATTCCATGCGGGTAG+TGG | + | chr8_3:5695368-5695387 | Msa1272200:intron | 50.0% | |
TTGTTGGCCGTCGTTGAGTA+GGG | + | chr8_3:5695903-5695922 | Msa1272200:CDS | 50.0% | |
GGTTTCCAACTCCAGCCTAA+AGG | - | chr8_3:5696208-5696227 | None:intergenic | 50.0% | |
GGTTGGAGAAAGAAGCGGTG+GGG | - | chr8_3:5692473-5692492 | None:intergenic | 55.0% | |
CTGGTTGGAGAAAGAAGCGG+TGG | - | chr8_3:5692475-5692494 | None:intergenic | 55.0% | |
TGGATTGCAGGTTGTGCCTC+AGG | + | chr8_3:5692752-5692771 | Msa1272200:intron | 55.0% | |
AGGTTGTGCCTCAGGCTGAT+AGG | + | chr8_3:5692760-5692779 | Msa1272200:intron | 55.0% | |
GGTTGTGCCTCAGGCTGATA+GGG | + | chr8_3:5692761-5692780 | Msa1272200:intron | 55.0% | |
!! | GGTCCTAAATGTTGGTGCCG+AGG | + | chr8_3:5693743-5693762 | Msa1272200:intron | 55.0% |
CAGCCTCGGCACCAACATTT+AGG | - | chr8_3:5693749-5693768 | None:intergenic | 55.0% | |
ATGTGGTCTATGGCGGTCCA+TGG | + | chr8_3:5694103-5694122 | Msa1272200:intron | 55.0% | |
ACCCCCACTGATATCTGCCA+TGG | + | chr8_3:5694236-5694255 | Msa1272200:intron | 55.0% | |
GCCATGGCAGATATCAGTGG+GGG | - | chr8_3:5694240-5694259 | None:intergenic | 55.0% | |
GGCCATGGCAGATATCAGTG+GGG | - | chr8_3:5694241-5694260 | None:intergenic | 55.0% | |
CGGCCATGGCAGATATCAGT+GGG | - | chr8_3:5694242-5694261 | None:intergenic | 55.0% | |
TCGGCCATGGCAGATATCAG+TGG | - | chr8_3:5694243-5694262 | None:intergenic | 55.0% | |
! | AATGCCACTGGCCCACCTTT+TGG | + | chr8_3:5694382-5694401 | Msa1272200:intron | 55.0% |
! | ATGCCACTGGCCCACCTTTT+GGG | + | chr8_3:5694383-5694402 | Msa1272200:intron | 55.0% |
TGACCAAAGAGTCCTCACGC+TGG | + | chr8_3:5694542-5694561 | Msa1272200:intron | 55.0% | |
GACCAAAGAGTCCTCACGCT+GGG | + | chr8_3:5694543-5694562 | Msa1272200:intron | 55.0% | |
CTTGTTGGCCGTCGTTGAGT+AGG | + | chr8_3:5695902-5695921 | Msa1272200:CDS | 55.0% | |
GGCCAAACCCTACTCAACGA+CGG | - | chr8_3:5695913-5695932 | None:intergenic | 55.0% | |
! | CATGGCAGGGTCTTGGCTCT+CGG | - | chr8_3:5694129-5694148 | None:intergenic | 60.0% |
ACAAAGCGACCGGCATGGCA+GGG | - | chr8_3:5694142-5694161 | None:intergenic | 60.0% | |
TGACGGCGTCACAAAGCGAC+CGG | - | chr8_3:5694152-5694171 | None:intergenic | 60.0% | |
TTAGGTGTGTTGGGCTCCGG+AGG | + | chr8_3:5694456-5694475 | Msa1272200:intron | 60.0% | |
CTTAAGGCCTGCCTTGACCC+TGG | - | chr8_3:5694486-5694505 | None:intergenic | 60.0% | |
CAGGGTCAAGGCAGGCCTTA+AGG | + | chr8_3:5694484-5694503 | Msa1272200:intron | 60.0% | |
CTCCCAGCGTGAGGACTCTT+TGG | - | chr8_3:5694548-5694567 | None:intergenic | 60.0% | |
AAGAGTCCTCACGCTGGGAG+CGG | + | chr8_3:5694548-5694567 | Msa1272200:intron | 60.0% | |
TATATCCCGCTCCCAGCGTG+AGG | - | chr8_3:5694557-5694576 | None:intergenic | 60.0% | |
! | CATGCGGGTAGTGGTGTGCA+GGG | + | chr8_3:5695377-5695396 | Msa1272200:intron | 60.0% |
! | ATGCGGGTAGTGGTGTGCAG+GGG | + | chr8_3:5695378-5695397 | Msa1272200:intron | 60.0% |
GGCCGTCGTTGAGTAGGGTT+TGG | + | chr8_3:5695908-5695927 | Msa1272200:exon | 60.0% | |
! | AGGGTCTTGGCTCTCGGCCA+TGG | - | chr8_3:5694123-5694142 | None:intergenic | 65.0% |
GAGCCAAGACCCTGCCATGC+CGG | + | chr8_3:5694130-5694149 | Msa1272200:intron | 65.0% | |
CACAAAGCGACCGGCATGGC+AGG | - | chr8_3:5694143-5694162 | None:intergenic | 65.0% | |
GCGTCACAAAGCGACCGGCA+TGG | - | chr8_3:5694147-5694166 | None:intergenic | 65.0% | |
CAGCCCAAAAGGTGGGCCAG+TGG | - | chr8_3:5694389-5694408 | None:intergenic | 65.0% | |
CCTTGACCCTGGTGAGCCTC+CGG | - | chr8_3:5694475-5694494 | None:intergenic | 65.0% | |
AGGCTCACCAGGGTCAAGGC+AGG | + | chr8_3:5694476-5694495 | Msa1272200:intron | 65.0% | |
AGAGTCCTCACGCTGGGAGC+GGG | + | chr8_3:5694549-5694568 | Msa1272200:intron | 65.0% | |
CCTGCACACCACTACCCGCA+TGG | - | chr8_3:5695379-5695398 | None:intergenic | 65.0% | |
! | CCATGCGGGTAGTGGTGTGC+AGG | + | chr8_3:5695376-5695395 | Msa1272200:intron | 65.0% |
CGACCGGCATGGCAGGGTCT+TGG | - | chr8_3:5694136-5694155 | None:intergenic | 70.0% | |
TTGGGCTCCGGAGGCTCACC+AGG | + | chr8_3:5694465-5694484 | Msa1272200:intron | 70.0% | |
TGGGCTCCGGAGGCTCACCA+GGG | + | chr8_3:5694466-5694485 | Msa1272200:intron | 70.0% | |
CCGGAGGCTCACCAGGGTCA+AGG | + | chr8_3:5694472-5694491 | Msa1272200:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 5692275 | 5696260 | 5692275 | ID=Msa1272200;Name=Msa1272200 |
chr8_3 | mRNA | 5692275 | 5696260 | 5692275 | ID=Msa1272200-mRNA-1;Parent=Msa1272200;Name=Msa1272200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=145|1|1|1|1|1|7|337|135 |
chr8_3 | exon | 5692275 | 5692504 | 5692275 | ID=Msa1272200-mRNA-1:exon:2058;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5692606 | 5692664 | 5692606 | ID=Msa1272200-mRNA-1:exon:2059;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5692762 | 5692812 | 5692762 | ID=Msa1272200-mRNA-1:exon:2060;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5693590 | 5693655 | 5693590 | ID=Msa1272200-mRNA-1:exon:2061;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5693744 | 5693791 | 5693744 | ID=Msa1272200-mRNA-1:exon:2062;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5695560 | 5695589 | 5695560 | ID=Msa1272200-mRNA-1:exon:2063;Parent=Msa1272200-mRNA-1 |
chr8_3 | exon | 5695855 | 5696260 | 5695855 | ID=Msa1272200-mRNA-1:exon:2064;Parent=Msa1272200-mRNA-1 |
chr8_3 | five_prime_UTR | 5692275 | 5692419 | 5692275 | ID=Msa1272200-mRNA-1:five_prime_utr;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5692420 | 5692504 | 5692420 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5692606 | 5692664 | 5692606 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5692762 | 5692812 | 5692762 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5693590 | 5693655 | 5693590 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5693744 | 5693791 | 5693744 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5695560 | 5695589 | 5695560 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | CDS | 5695855 | 5695923 | 5695855 | ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1 |
chr8_3 | three_prime_UTR | 5695924 | 5696260 | 5695924 | ID=Msa1272200-mRNA-1:three_prime_utr;Parent=Msa1272200-mRNA-1 |
Gene Sequence |
Protein sequence |