AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272200 MtrunA17_Chr8g0336931 97.778 135 3 0 1 135 1 135 8.96e-95 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272200 AT3G60210.1 60.432 139 50 3 1 135 1 138 5.50e-56 171
Msa1272200 AT2G44650.1 58.273 139 54 2 1 135 1 139 2.79e-53 164

Find 59 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGAATGGATTGGAATT+TGG 0.115284 8_3:-5692362 None:intergenic
CAAAGAATGGATTGGAATTT+GGG 0.188113 8_3:-5692361 None:intergenic
CAGCCTCGGCACCAACATTT+AGG 0.253224 8_3:-5693746 None:intergenic
TGAATACATTATTATCAAAA+AGG 0.306931 8_3:-5695957 None:intergenic
TATTCTTTGTTGACATTCCT+TGG 0.313698 8_3:+5696033 Msa1272200:three_prime_UTR
GTATTCATGGCAAATGTATT+AGG 0.331892 8_3:+5695973 Msa1272200:three_prime_UTR
TAAGAAATGGGAACCCTCTA+AGG 0.340240 8_3:+5692643 Msa1272200:CDS
AGGTTGTGCCTCAGGCTGAT+AGG 0.348377 8_3:+5692760 Msa1272200:intron
CATTAAATCAAGTGACTTGT+TGG 0.348829 8_3:+5695887 Msa1272200:CDS
AGAAATTGGAATAACCTTAG+AGG 0.365531 8_3:-5692657 None:intergenic
TTAATGCAATTGCTAAGAAA+TGG 0.381136 8_3:+5692630 Msa1272200:CDS
GGCCGTCGTTGAGTAGGGTT+TGG 0.386350 8_3:+5695908 Msa1272200:exon
ATTCTTTGTTGACATTCCTT+GGG 0.391711 8_3:+5696034 Msa1272200:three_prime_UTR
AGTGACGAAATGATACCTTT+AGG 0.394240 8_3:+5696190 Msa1272200:three_prime_UTR
GAATTATACTTGGGAGTCTC+TGG 0.395066 8_3:-5692491 None:intergenic
CTCAAATTTAACAGCTGACT+TGG 0.404760 8_3:-5693615 None:intergenic
TGGATTGCAGGTTGTGCCTC+AGG 0.408276 8_3:+5692752 Msa1272200:intron
CACCGACATAAATGCTTATG+AGG 0.413729 8_3:+5695568 Msa1272200:CDS
CTTGTTGGCCGTCGTTGAGT+AGG 0.414558 8_3:+5695902 Msa1272200:CDS
TTGTGAAGGAAGGGAGTTGT+TGG 0.416342 8_3:-5692444 None:intergenic
TTTGAAGAGGAACTCTTTGA+AGG 0.442390 8_3:+5692607 Msa1272200:CDS
TTATCTCTTATCCATTATCA+TGG 0.443311 8_3:+5692401 Msa1272200:exon
AAATGTGGAAGCCATGATAA+TGG 0.443462 8_3:-5692412 None:intergenic
TTAACATTAATCAAAATCCT+TGG 0.446289 8_3:+5696239 Msa1272200:three_prime_UTR
AATGAACTGTTATCAATCAT+TGG 0.459294 8_3:+5696001 Msa1272200:three_prime_UTR
TAATGCAATTGCTAAGAAAT+GGG 0.473150 8_3:+5692631 Msa1272200:CDS
TGATACCTTTAGGCTGGAGT+TGG 0.477447 8_3:+5696200 Msa1272200:three_prime_UTR
GGTTGTGCCTCAGGCTGATA+GGG 0.488435 8_3:+5692761 Msa1272200:intron
GTGAACTGAACAACAAAGAA+TGG 0.490758 8_3:-5692374 None:intergenic
TTGTTTCAGGTCCTAAATGT+TGG 0.499652 8_3:+5693735 Msa1272200:intron
TTGTTGGCCGTCGTTGAGTA+GGG 0.502146 8_3:+5695903 Msa1272200:CDS
CTGAACAACAAAGAATGGAT+TGG 0.502168 8_3:-5692369 None:intergenic
AAATTTGAGCGATATCTTGT+GGG 0.511491 8_3:+5693629 Msa1272200:CDS
GAAATTGGAATAACCTTAGA+GGG 0.512239 8_3:-5692656 None:intergenic
TAAATTTGAGCGATATCTTG+TGG 0.516085 8_3:+5693628 Msa1272200:CDS
TAGGGTTCTTATTCGTCTTG+AGG 0.524050 8_3:+5692779 Msa1272200:CDS
ACGAAATGATACCTTTAGGC+TGG 0.526719 8_3:+5696194 Msa1272200:three_prime_UTR
TTCTTTGTTGACATTCCTTG+GGG 0.545808 8_3:+5696035 Msa1272200:three_prime_UTR
TCAAATTTAACAGCTGACTT+GGG 0.548423 8_3:-5693614 None:intergenic
GGTTTCCAACTCCAGCCTAA+AGG 0.549480 8_3:-5696205 None:intergenic
TGTTGGTATGGTGAGAAATG+TGG 0.554797 8_3:-5692427 None:intergenic
GAGGCTGAAAATGTAAAAGC+TGG 0.554966 8_3:+5693762 Msa1272200:CDS
TATACTTGGGAGTCTCTGGT+TGG 0.556109 8_3:-5692487 None:intergenic
AGGTATCATTTCGTCACTGA+AGG 0.572999 8_3:-5696185 None:intergenic
TGTCAAGATTGAAGACAAGC+GGG 0.586481 8_3:-5692281 None:intergenic
CTGGTTGGAGAAAGAAGCGG+TGG 0.589531 8_3:-5692472 None:intergenic
TTTGGGCAGAAAACTGCTGG+TGG 0.594539 8_3:+5693581 Msa1272200:intron
AAGGAAGGGAGTTGTTGGTA+TGG 0.597282 8_3:-5692439 None:intergenic
AAATGTAAAAGCTGGCTCGA+AGG 0.601859 8_3:+5693770 Msa1272200:CDS
AAAGAATGGATTGGAATTTG+GGG 0.602324 8_3:-5692360 None:intergenic
ATGTCAAGATTGAAGACAAG+CGG 0.603037 8_3:-5692282 None:intergenic
GGTCCTAAATGTTGGTGCCG+AGG 0.613958 8_3:+5693743 Msa1272200:intron
CTGCTCTTTGTCTCACAAAG+CGG 0.654255 8_3:-5695931 None:intergenic
GGTTGGAGAAAGAAGCGGTG+GGG 0.659685 8_3:-5692470 None:intergenic
AACCTCATAAGCATTTATGT+CGG 0.663411 8_3:-5695570 None:intergenic
GGCCAAACCCTACTCAACGA+CGG 0.678555 8_3:-5695910 None:intergenic
TGGTTGGAGAAAGAAGCGGT+GGG 0.681233 8_3:-5692471 None:intergenic
ATAAGAACCCTATCAGCCTG+AGG 0.720606 8_3:-5692768 None:intergenic
TCTCTGGTTGGAGAAAGAAG+CGG 0.732198 8_3:-5692475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAATT+TGG + chr8_3:5692844-5692863 Msa1272200:intron 0.0%
!!! TTTTTTTTTTTTTTTAATTT+GGG + chr8_3:5692845-5692864 Msa1272200:intron 0.0%
!!! TATTAACTTTTTTTTCATTT+GGG + chr8_3:5692573-5692592 Msa1272200:intron 10.0%
!!! GTATTAACTTTTTTTTCATT+TGG + chr8_3:5692572-5692591 Msa1272200:intron 15.0%
!!! TATGATTTTTGGTTATTTTT+TGG + chr8_3:5692732-5692751 Msa1272200:intron 15.0%
!! ATAACAATAAGTTATATGTA+TGG - chr8_3:5693412-5693431 None:intergenic 15.0%
!!! TGATTGTGAATATAATTTTT+TGG + chr8_3:5693563-5693582 Msa1272200:intron 15.0%
!!! GATTGTGAATATAATTTTTT+GGG + chr8_3:5693564-5693583 Msa1272200:intron 15.0%
!! ATATTTGTACTTATGTATAA+AGG + chr8_3:5695605-5695624 Msa1272200:intron 15.0%
!! TTAAATGAATTAATCAATGT+CGG + chr8_3:5695639-5695658 Msa1272200:intron 15.0%
!! TGAATACATTATTATCAAAA+AGG - chr8_3:5695960-5695979 None:intergenic 15.0%
!!! TTTTGATAATAATGTATTCA+TGG + chr8_3:5695960-5695979 Msa1272200:three_prime_UTR 15.0%
!! TGGATAATAAACCTAAAAAA+GGG + chr8_3:5692317-5692336 Msa1272200:five_prime_UTR 20.0%
!! CTTCGTTAAAATGAATAAAA+GGG - chr8_3:5692553-5692572 None:intergenic 20.0%
!! ACTTCGTTAAAATGAATAAA+AGG - chr8_3:5692554-5692573 None:intergenic 20.0%
!!! TTGTTTTTGCATATGATTTT+TGG + chr8_3:5692721-5692740 Msa1272200:intron 20.0%
!!! AATTTTTTTGGATAAGATTG+TGG - chr8_3:5692821-5692840 None:intergenic 20.0%
!! TTGTTTATTTACTATGAAAG+AGG + chr8_3:5693797-5693816 Msa1272200:intron 20.0%
!! TTACTAATTAATTAGTTGTG+AGG + chr8_3:5694618-5694637 Msa1272200:intron 20.0%
!! TTTGTAATATGAGATATTTC+AGG + chr8_3:5694785-5694804 Msa1272200:intron 20.0%
!!! AATCATTATGGTAATTTGTT+GGG + chr8_3:5694869-5694888 Msa1272200:intron 20.0%
!! TAGTTCAAATGATGAAATAA+AGG + chr8_3:5695418-5695437 Msa1272200:intron 20.0%
!! AAATAAAGGAAAATAGTTAG+TGG + chr8_3:5695432-5695451 Msa1272200:intron 20.0%
!!! AATCATAATTATTCTTTTGC+AGG + chr8_3:5695538-5695557 Msa1272200:intron 20.0%
!!! AATTCTAATTTGTAACTCAA+CGG + chr8_3:5695783-5695802 Msa1272200:intron 20.0%
!! TTAATGTTAAAAAGAGAGAA+GGG - chr8_3:5696229-5696248 None:intergenic 20.0%
!! ATTAATGTTAAAAAGAGAGA+AGG - chr8_3:5696230-5696249 None:intergenic 20.0%
! GTGGATAATAAACCTAAAAA+AGG + chr8_3:5692316-5692335 Msa1272200:five_prime_UTR 25.0%
! TTATCTCTTATCCATTATCA+TGG + chr8_3:5692401-5692420 Msa1272200:exon 25.0%
! GTAGAAGAAGAATTATACTT+GGG - chr8_3:5692503-5692522 None:intergenic 25.0%
! AGTAGAAGAAGAATTATACT+TGG - chr8_3:5692504-5692523 None:intergenic 25.0%
! TTAATGCAATTGCTAAGAAA+TGG + chr8_3:5692630-5692649 Msa1272200:CDS 25.0%
! TAATGCAATTGCTAAGAAAT+GGG + chr8_3:5692631-5692650 Msa1272200:CDS 25.0%
! CAGAAAATGAAAAGAGAAAT+TGG - chr8_3:5692674-5692693 None:intergenic 25.0%
!! CAATTTCTCTTTTCATTTTC+TGG + chr8_3:5692672-5692691 Msa1272200:intron 25.0%
!!! TCTGGTTTTTTGTTTTTGAA+AGG + chr8_3:5692690-5692709 Msa1272200:intron 25.0%
! GTGAATGTGATTTAACTATT+TGG + chr8_3:5693453-5693472 Msa1272200:intron 25.0%
! TGTAATTGGCACTTATAAAT+TGG + chr8_3:5693532-5693551 Msa1272200:intron 25.0%
! ATTATATTCACAATCATGCA+TGG - chr8_3:5693559-5693578 None:intergenic 25.0%
! AGTAAGTATACATATTGCAT+AGG + chr8_3:5693655-5693674 Msa1272200:intron 25.0%
! TTCAGATGTAAAACAACATA+AGG - chr8_3:5693683-5693702 None:intergenic 25.0%
!! TTTCCTTTTGTATTTGTTTC+AGG + chr8_3:5693722-5693741 Msa1272200:intron 25.0%
!! TTAAGTTGCTATTGTAAACT+GGG - chr8_3:5694069-5694088 None:intergenic 25.0%
!!! TTTAAGTTGCTATTGTAAAC+TGG - chr8_3:5694070-5694089 None:intergenic 25.0%
! TAAATTACCGATATTCAATG+TGG + chr8_3:5694086-5694105 Msa1272200:intron 25.0%
!! ACTTTTAGCAATGAAAGTTT+AGG + chr8_3:5694438-5694457 Msa1272200:intron 25.0%
! AGACATTAGTTCAATCATTA+TGG + chr8_3:5694857-5694876 Msa1272200:intron 25.0%
!! CAATCATTATGGTAATTTGT+TGG + chr8_3:5694868-5694887 Msa1272200:intron 25.0%
!!! ATAACACAATTTTGAAGAAG+CGG - chr8_3:5695039-5695058 None:intergenic 25.0%
! TTATTTGTACAGTATCTATC+TGG + chr8_3:5695081-5695100 Msa1272200:intron 25.0%
! TATGAACAAGTTCATAACTT+GGG - chr8_3:5695147-5695166 None:intergenic 25.0%
! TTATGAACAAGTTCATAACT+TGG - chr8_3:5695148-5695167 None:intergenic 25.0%
!! TTGTGTCTAAAGAAATTTTC+AGG + chr8_3:5695190-5695209 Msa1272200:intron 25.0%
!!! CATTTTTTAAGAACCACATT+CGG + chr8_3:5695236-5695255 Msa1272200:intron 25.0%
!!! ATTTTTTAAGAACCACATTC+GGG + chr8_3:5695237-5695256 Msa1272200:intron 25.0%
!! GTCTAAACTTGATAATATAG+AGG + chr8_3:5695327-5695346 Msa1272200:intron 25.0%
!!! TATTGGTCTAATTGTTTTTC+AGG + chr8_3:5695833-5695852 Msa1272200:intron 25.0%
! AATGAACTGTTATCAATCAT+TGG + chr8_3:5696001-5696020 Msa1272200:three_prime_UTR 25.0%
!!! GTGTTGTTAAACCCTTTTTT+AGG - chr8_3:5692331-5692350 None:intergenic 30.0%
!! AAAGAATGGATTGGAATTTG+GGG - chr8_3:5692363-5692382 None:intergenic 30.0%
!! CAAAGAATGGATTGGAATTT+GGG - chr8_3:5692364-5692383 None:intergenic 30.0%
!! ACAAAGAATGGATTGGAATT+TGG - chr8_3:5692365-5692384 None:intergenic 30.0%
GAAATTGGAATAACCTTAGA+GGG - chr8_3:5692659-5692678 None:intergenic 30.0%
AGAAATTGGAATAACCTTAG+AGG - chr8_3:5692660-5692679 None:intergenic 30.0%
!!! TTGGTTATTTTTTGGATTGC+AGG + chr8_3:5692740-5692759 Msa1272200:intron 30.0%
!! CTTGTTATTGTTCCAATGTT+TGG + chr8_3:5692993-5693012 Msa1272200:intron 30.0%
! TGAATGTTGGATTTGTTTGT+AGG + chr8_3:5693063-5693082 Msa1272200:intron 30.0%
! GAATGTTGGATTTGTTTGTA+GGG + chr8_3:5693064-5693083 Msa1272200:intron 30.0%
AACACATCAAATTCATGACA+CGG - chr8_3:5693126-5693145 None:intergenic 30.0%
TGTCATGAATTTGATGTGTT+TGG + chr8_3:5693126-5693145 Msa1272200:intron 30.0%
AAAACTAAGCTGTATCACAT+TGG + chr8_3:5693168-5693187 Msa1272200:intron 30.0%
CAATGAGGATATATCAGATT+AGG - chr8_3:5693201-5693220 None:intergenic 30.0%
TGCAGTTATCTCGATAATAA+GGG - chr8_3:5693278-5693297 None:intergenic 30.0%
TTGCAGTTATCTCGATAATA+AGG - chr8_3:5693279-5693298 None:intergenic 30.0%
TACTCATAAGTCATGTAAGA+AGG + chr8_3:5693334-5693353 Msa1272200:intron 30.0%
! ATGTAAGAAGGTATAGACTA+GGG + chr8_3:5693346-5693365 Msa1272200:intron 30.0%
!! ATTTTGCTATAATGTCCGTA+AGG + chr8_3:5693504-5693523 Msa1272200:intron 30.0%
! TCAAATTTAACAGCTGACTT+GGG - chr8_3:5693617-5693636 None:intergenic 30.0%
TAAATTTGAGCGATATCTTG+TGG + chr8_3:5693628-5693647 Msa1272200:CDS 30.0%
AAATTTGAGCGATATCTTGT+GGG + chr8_3:5693629-5693648 Msa1272200:CDS 30.0%
TGCTTGCCATTGTAAAATTA+GGG - chr8_3:5693947-5693966 None:intergenic 30.0%
TTGCTTGCCATTGTAAAATT+AGG - chr8_3:5693948-5693967 None:intergenic 30.0%
TGACATAAATCCTAATCACA+AGG + chr8_3:5693978-5693997 Msa1272200:intron 30.0%
TTTCATTACCAATAACTCCA+GGG - chr8_3:5694024-5694043 None:intergenic 30.0%
ATTTCATTACCAATAACTCC+AGG - chr8_3:5694025-5694044 None:intergenic 30.0%
AATGAAAGTTTAGGTGTGTT+GGG + chr8_3:5694447-5694466 Msa1272200:intron 30.0%
CACACTTAAATATGATGAGA+AGG + chr8_3:5694595-5694614 Msa1272200:intron 30.0%
! AATGTGATGCAACATTTTTG+AGG + chr8_3:5694810-5694829 Msa1272200:intron 30.0%
!! AATTTTGAAGAAGCGGATAA+GGG - chr8_3:5695032-5695051 None:intergenic 30.0%
!!! TGTTATTTTGCAACTCTGTT+TGG + chr8_3:5695053-5695072 Msa1272200:intron 30.0%
TATAATAAGTATCCCGAATG+TGG - chr8_3:5695252-5695271 None:intergenic 30.0%
ACTCATTAATCAAATGACCA+TGG + chr8_3:5695278-5695297 Msa1272200:intron 30.0%
CAAAGTGATAATAGAAACCA+TGG - chr8_3:5695298-5695317 None:intergenic 30.0%
AACCTCATAAGCATTTATGT+CGG - chr8_3:5695573-5695592 None:intergenic 30.0%
! TATCTGAAGAACAACTTTTG+TGG + chr8_3:5695674-5695693 Msa1272200:intron 30.0%
! ATCTGAAGAACAACTTTTGT+GGG + chr8_3:5695675-5695694 Msa1272200:intron 30.0%
!!! AATTGTTTTTCAGGTGGATT+TGG + chr8_3:5695842-5695861 Msa1272200:intron 30.0%
!!! ATTGTTTTTCAGGTGGATTT+GGG + chr8_3:5695843-5695862 Msa1272200:intron 30.0%
! CATTAAATCAAGTGACTTGT+TGG + chr8_3:5695887-5695906 Msa1272200:CDS 30.0%
GTATTCATGGCAAATGTATT+AGG + chr8_3:5695973-5695992 Msa1272200:three_prime_UTR 30.0%
TATTCTTTGTTGACATTCCT+TGG + chr8_3:5696033-5696052 Msa1272200:three_prime_UTR 30.0%
ATTCTTTGTTGACATTCCTT+GGG + chr8_3:5696034-5696053 Msa1272200:three_prime_UTR 30.0%
!!! TCTGCTTTTTTCAATATTGC+TGG + chr8_3:5696086-5696105 Msa1272200:three_prime_UTR 30.0%
!!! CTGCTTTTTTCAATATTGCT+GGG + chr8_3:5696087-5696106 Msa1272200:three_prime_UTR 30.0%
ATGTCAAGATTGAAGACAAG+CGG - chr8_3:5692285-5692304 None:intergenic 35.0%
! CTTGACATTTTGTGACTTTG+TGG + chr8_3:5692297-5692316 Msa1272200:five_prime_UTR 35.0%
CTGAACAACAAAGAATGGAT+TGG - chr8_3:5692372-5692391 None:intergenic 35.0%
GTGAACTGAACAACAAAGAA+TGG - chr8_3:5692377-5692396 None:intergenic 35.0%
AAATGTGGAAGCCATGATAA+TGG - chr8_3:5692415-5692434 None:intergenic 35.0%
!!! GGTATGTTTCAGTTTTGAAG+AGG + chr8_3:5692594-5692613 Msa1272200:intron 35.0%
TTTGAAGAGGAACTCTTTGA+AGG + chr8_3:5692607-5692626 Msa1272200:CDS 35.0%
GCAGTCTTGAAATAATCACT+AGG + chr8_3:5693021-5693040 Msa1272200:intron 35.0%
CTAGGATAAGTTCAAACTGT+AGG + chr8_3:5693039-5693058 Msa1272200:intron 35.0%
! GATTTGTTTGTAGGGATCAT+TGG + chr8_3:5693072-5693091 Msa1272200:intron 35.0%
!! GTTGTTTTGTCAGTGAAAAC+AGG + chr8_3:5693240-5693259 Msa1272200:intron 35.0%
TCTCGATAATAAGGGAACAT+CGG - chr8_3:5693270-5693289 None:intergenic 35.0%
! CATGTAAGAAGGTATAGACT+AGG + chr8_3:5693345-5693364 Msa1272200:intron 35.0%
! TCCGTAAGGTATTCTGTAAT+TGG + chr8_3:5693518-5693537 Msa1272200:intron 35.0%
GCCAATTACAGAATACCTTA+CGG - chr8_3:5693522-5693541 None:intergenic 35.0%
CTCAAATTTAACAGCTGACT+TGG - chr8_3:5693618-5693637 None:intergenic 35.0%
GGACCTGAAACAAATACAAA+AGG - chr8_3:5693728-5693747 None:intergenic 35.0%
! TTGTTTCAGGTCCTAAATGT+TGG + chr8_3:5693735-5693754 Msa1272200:intron 35.0%
! AGCTTTTACATTTTCAGCCT+CGG - chr8_3:5693763-5693782 None:intergenic 35.0%
TGAAAGAGGTGAAGTAGAAA+AGG + chr8_3:5693811-5693830 Msa1272200:intron 35.0%
! TAGTTGACTCAGATTCTGAA+AGG + chr8_3:5693918-5693937 Msa1272200:intron 35.0%
! AGGACACCCTAATTTTACAA+TGG + chr8_3:5693938-5693957 Msa1272200:intron 35.0%
CTTGTTTGAACCTTGTGATT+AGG - chr8_3:5693991-5694010 None:intergenic 35.0%
! TAAACTGGGAATTGGAGTTT+TGG - chr8_3:5694055-5694074 None:intergenic 35.0%
TGCTATTGTAAACTGGGAAT+TGG - chr8_3:5694063-5694082 None:intergenic 35.0%
CCATAGACCACATTGAATAT+CGG - chr8_3:5694096-5694115 None:intergenic 35.0%
ATATTCAATGTGGTCTATGG+CGG + chr8_3:5694096-5694115 Msa1272200:intron 35.0%
TCAGCAGTGTTGTCAAATAT+CGG - chr8_3:5694262-5694281 None:intergenic 35.0%
ACCAATATTCCCAAATCTGT+TGG + chr8_3:5694290-5694309 Msa1272200:intron 35.0%
ACCAACAGATTTGGGAATAT+TGG - chr8_3:5694294-5694313 None:intergenic 35.0%
TCTAATCTAATCAGCCCAAA+AGG - chr8_3:5694400-5694419 None:intergenic 35.0%
CAATGAAAGTTTAGGTGTGT+TGG + chr8_3:5694446-5694465 Msa1272200:intron 35.0%
AAAATCATACGAGCACTAAG+TGG + chr8_3:5694901-5694920 Msa1272200:intron 35.0%
! TGTTAGATCTTGCTATCACA+AGG - chr8_3:5694927-5694946 None:intergenic 35.0%
GATAGCAAGATCTAACAACT+TGG + chr8_3:5694930-5694949 Msa1272200:intron 35.0%
! AACTTGGAAGTCTCTTTTGT+TGG + chr8_3:5694946-5694965 Msa1272200:intron 35.0%
! ACTTGGAAGTCTCTTTTGTT+GGG + chr8_3:5694947-5694966 Msa1272200:intron 35.0%
!! CAATTTTGAAGAAGCGGATA+AGG - chr8_3:5695033-5695052 None:intergenic 35.0%
! TCCACATAGTTCTTAACTTG+TGG + chr8_3:5695104-5695123 Msa1272200:intron 35.0%
TCCACAAGTTAAGAACTATG+TGG - chr8_3:5695108-5695127 None:intergenic 35.0%
AACAAGTTCATAACTTGGGA+AGG - chr8_3:5695143-5695162 None:intergenic 35.0%
TCACTTATTTGCATTCCATG+CGG + chr8_3:5695361-5695380 Msa1272200:intron 35.0%
! GTATTTGAGCAAGTGCTATT+TGG + chr8_3:5695700-5695719 Msa1272200:intron 35.0%
!!! TGGTCTAATTGTTTTTCAGG+TGG + chr8_3:5695836-5695855 Msa1272200:intron 35.0%
!!! TTGTTTTTCAGGTGGATTTG+GGG + chr8_3:5695844-5695863 Msa1272200:intron 35.0%
TTCTTTGTTGACATTCCTTG+GGG + chr8_3:5696035-5696054 Msa1272200:three_prime_UTR 35.0%
AGTGACGAAATGATACCTTT+AGG + chr8_3:5696190-5696209 Msa1272200:three_prime_UTR 35.0%
TGTCAAGATTGAAGACAAGC+GGG - chr8_3:5692284-5692303 None:intergenic 40.0%
TGTTGGTATGGTGAGAAATG+TGG - chr8_3:5692430-5692449 None:intergenic 40.0%
GAATTATACTTGGGAGTCTC+TGG - chr8_3:5692494-5692513 None:intergenic 40.0%
TAAGAAATGGGAACCCTCTA+AGG + chr8_3:5692643-5692662 Msa1272200:CDS 40.0%
TAGGGTTCTTATTCGTCTTG+AGG + chr8_3:5692779-5692798 Msa1272200:CDS 40.0%
TCAAACTGTAGGCTGAATGT+TGG + chr8_3:5693050-5693069 Msa1272200:intron 40.0%
TGACACGGTACAACATCAAA+CGG - chr8_3:5693111-5693130 None:intergenic 40.0%
ACTAAGCTGTATCACATTGG+TGG + chr8_3:5693171-5693190 Msa1272200:intron 40.0%
CAAGCTGATGACATTCAATG+AGG - chr8_3:5693216-5693235 None:intergenic 40.0%
CTCATTGAATGTCATCAGCT+TGG + chr8_3:5693214-5693233 Msa1272200:intron 40.0%
!!! TTTTTTGGGCAGAAAACTGC+TGG + chr8_3:5693578-5693597 Msa1272200:intron 40.0%
GAGGCTGAAAATGTAAAAGC+TGG + chr8_3:5693762-5693781 Msa1272200:CDS 40.0%
!! AAATGTAAAAGCTGGCTCGA+AGG + chr8_3:5693770-5693789 Msa1272200:CDS 40.0%
AAACAAGTAACCATGAACCC+TGG + chr8_3:5694004-5694023 Msa1272200:intron 40.0%
CCGATATTCAATGTGGTCTA+TGG + chr8_3:5694093-5694112 Msa1272200:intron 40.0%
CTGCCATATCTGCTGAAATT+GGG + chr8_3:5694194-5694213 Msa1272200:intron 40.0%
ATGCCCAATTTCAGCAGATA+TGG - chr8_3:5694200-5694219 None:intergenic 40.0%
ATATCTGCTGAAATTGGGCA+TGG + chr8_3:5694199-5694218 Msa1272200:intron 40.0%
! AGATATCAGTGGGGGTTTTT+GGG - chr8_3:5694232-5694251 None:intergenic 40.0%
GAGCTTCAACCAACAGATTT+GGG - chr8_3:5694302-5694321 None:intergenic 40.0%
TGAGCTTCAACCAACAGATT+TGG - chr8_3:5694303-5694322 None:intergenic 40.0%
! TGTTGGTTGAAGCTCATAGA+TGG + chr8_3:5694307-5694326 Msa1272200:intron 40.0%
CAAAGGTCTTCTGTTTGAGA+GGG - chr8_3:5694346-5694365 None:intergenic 40.0%
AGACCTTTGGACTTAAACGT+TGG + chr8_3:5694357-5694376 Msa1272200:intron 40.0%
TGTCCAACGTTTAAGTCCAA+AGG - chr8_3:5694363-5694382 None:intergenic 40.0%
ATCTAATCAGCCCAAAAGGT+GGG - chr8_3:5694396-5694415 None:intergenic 40.0%
AATCTAATCAGCCCAAAAGG+TGG - chr8_3:5694397-5694416 None:intergenic 40.0%
! CTTGGAAGTCTCTTTTGTTG+GGG + chr8_3:5694948-5694967 Msa1272200:intron 40.0%
ACACAAATTCGTCTGCTGAA+GGG - chr8_3:5695176-5695195 None:intergenic 40.0%
CACTTATTTGCATTCCATGC+GGG + chr8_3:5695362-5695381 Msa1272200:intron 40.0%
CACCGACATAAATGCTTATG+AGG + chr8_3:5695568-5695587 Msa1272200:CDS 40.0%
! CTTTTCTCAAGAAAGCAGTG+TGG - chr8_3:5695752-5695771 None:intergenic 40.0%
GCAAAATCAAAAACTCCCCA+AGG - chr8_3:5696053-5696072 None:intergenic 40.0%
AGGTATCATTTCGTCACTGA+AGG - chr8_3:5696188-5696207 None:intergenic 40.0%
ACGAAATGATACCTTTAGGC+TGG + chr8_3:5696194-5696213 Msa1272200:three_prime_UTR 40.0%
AAGGAAGGGAGTTGTTGGTA+TGG - chr8_3:5692442-5692461 None:intergenic 45.0%
TTGTGAAGGAAGGGAGTTGT+TGG - chr8_3:5692447-5692466 None:intergenic 45.0%
! GTGGGGTTTTTGTGAAGGAA+GGG - chr8_3:5692456-5692475 None:intergenic 45.0%
TCTCTGGTTGGAGAAAGAAG+CGG - chr8_3:5692478-5692497 None:intergenic 45.0%
TATACTTGGGAGTCTCTGGT+TGG - chr8_3:5692490-5692509 None:intergenic 45.0%
ATAAGAACCCTATCAGCCTG+AGG - chr8_3:5692771-5692790 None:intergenic 45.0%
AGACTGCAGACACCAAACAT+TGG - chr8_3:5693008-5693027 None:intergenic 45.0%
ACCATGAACCCTGGAGTTAT+TGG + chr8_3:5694013-5694032 Msa1272200:intron 45.0%
ACCAATAACTCCAGGGTTCA+TGG - chr8_3:5694017-5694036 None:intergenic 45.0%
GACGCCGTCATTTCAGATTA+CGG + chr8_3:5694162-5694181 Msa1272200:intron 45.0%
! TCCGCCGTAATCTGAAATGA+CGG - chr8_3:5694169-5694188 None:intergenic 45.0%
CCAATTTCAGCAGATATGGC+AGG - chr8_3:5694196-5694215 None:intergenic 45.0%
CCTGCCATATCTGCTGAAAT+TGG + chr8_3:5694193-5694212 Msa1272200:intron 45.0%
! CAGATATCAGTGGGGGTTTT+TGG - chr8_3:5694233-5694252 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr8_3:5694256-5694275 None:intergenic 45.0%
CCAAAGGTCTTCTGTTTGAG+AGG - chr8_3:5694347-5694366 None:intergenic 45.0%
CCTCTCAAACAGAAGACCTT+TGG + chr8_3:5694344-5694363 Msa1272200:intron 45.0%
TAAACGTTGGACAATGCCAC+TGG + chr8_3:5694370-5694389 Msa1272200:intron 45.0%
TACACGTTCGTTGAGCCTTA+AGG - chr8_3:5694502-5694521 None:intergenic 45.0%
CCTAAGCTGCTCATAACACA+CGG + chr8_3:5694647-5694666 Msa1272200:intron 45.0%
! AAGTCTCTTTTGTTGGGGTG+AGG + chr8_3:5694953-5694972 Msa1272200:intron 45.0%
TTGTTGGGGTGAGGATTCAT+TGG + chr8_3:5694962-5694981 Msa1272200:intron 45.0%
GACACAAATTCGTCTGCTGA+AGG - chr8_3:5695177-5695196 None:intergenic 45.0%
TCTCAAGAAAGCAGTGTGGT+TGG - chr8_3:5695748-5695767 None:intergenic 45.0%
CTGCTCTTTGTCTCACAAAG+CGG - chr8_3:5695934-5695953 None:intergenic 45.0%
TGATACCTTTAGGCTGGAGT+TGG + chr8_3:5696200-5696219 Msa1272200:three_prime_UTR 45.0%
!!! AAAAAAAAAACTAATTTTTT+TGG - chr8_3:5692833-5692852 None:intergenic 5.0%
!! TTCAAAAAAAAATTTAAATA+TGG - chr8_3:5695495-5695514 None:intergenic 5.0%
!! TTATGATTATAATTTAAATA+TGG - chr8_3:5695526-5695545 None:intergenic 5.0%
!! CATTAATAAATAATAAATAT+TGG + chr8_3:5695816-5695835 Msa1272200:intron 5.0%
! GGTGGGGTTTTTGTGAAGGA+AGG - chr8_3:5692457-5692476 None:intergenic 50.0%
! AAGCGGTGGGGTTTTTGTGA+AGG - chr8_3:5692461-5692480 None:intergenic 50.0%
TGGTTGGAGAAAGAAGCGGT+GGG - chr8_3:5692474-5692493 None:intergenic 50.0%
TTTGGGCAGAAAACTGCTGG+TGG + chr8_3:5693581-5693600 Msa1272200:intron 50.0%
GCCGTCATTTCAGATTACGG+CGG + chr8_3:5694165-5694184 Msa1272200:intron 50.0%
TCTGCTGAAATTGGGCATGG+CGG + chr8_3:5694202-5694221 Msa1272200:intron 50.0%
AGTTTAGGTGTGTTGGGCTC+CGG + chr8_3:5694453-5694472 Msa1272200:intron 50.0%
GGCTCAACGAACGTGTACAA+CGG + chr8_3:5694505-5694524 Msa1272200:intron 50.0%
CCGTGTGTTATGAGCAGCTT+AGG - chr8_3:5694650-5694669 None:intergenic 50.0%
TTTGCATTCCATGCGGGTAG+TGG + chr8_3:5695368-5695387 Msa1272200:intron 50.0%
TTGTTGGCCGTCGTTGAGTA+GGG + chr8_3:5695903-5695922 Msa1272200:CDS 50.0%
GGTTTCCAACTCCAGCCTAA+AGG - chr8_3:5696208-5696227 None:intergenic 50.0%
GGTTGGAGAAAGAAGCGGTG+GGG - chr8_3:5692473-5692492 None:intergenic 55.0%
CTGGTTGGAGAAAGAAGCGG+TGG - chr8_3:5692475-5692494 None:intergenic 55.0%
TGGATTGCAGGTTGTGCCTC+AGG + chr8_3:5692752-5692771 Msa1272200:intron 55.0%
AGGTTGTGCCTCAGGCTGAT+AGG + chr8_3:5692760-5692779 Msa1272200:intron 55.0%
GGTTGTGCCTCAGGCTGATA+GGG + chr8_3:5692761-5692780 Msa1272200:intron 55.0%
!! GGTCCTAAATGTTGGTGCCG+AGG + chr8_3:5693743-5693762 Msa1272200:intron 55.0%
CAGCCTCGGCACCAACATTT+AGG - chr8_3:5693749-5693768 None:intergenic 55.0%
ATGTGGTCTATGGCGGTCCA+TGG + chr8_3:5694103-5694122 Msa1272200:intron 55.0%
ACCCCCACTGATATCTGCCA+TGG + chr8_3:5694236-5694255 Msa1272200:intron 55.0%
GCCATGGCAGATATCAGTGG+GGG - chr8_3:5694240-5694259 None:intergenic 55.0%
GGCCATGGCAGATATCAGTG+GGG - chr8_3:5694241-5694260 None:intergenic 55.0%
CGGCCATGGCAGATATCAGT+GGG - chr8_3:5694242-5694261 None:intergenic 55.0%
TCGGCCATGGCAGATATCAG+TGG - chr8_3:5694243-5694262 None:intergenic 55.0%
! AATGCCACTGGCCCACCTTT+TGG + chr8_3:5694382-5694401 Msa1272200:intron 55.0%
! ATGCCACTGGCCCACCTTTT+GGG + chr8_3:5694383-5694402 Msa1272200:intron 55.0%
TGACCAAAGAGTCCTCACGC+TGG + chr8_3:5694542-5694561 Msa1272200:intron 55.0%
GACCAAAGAGTCCTCACGCT+GGG + chr8_3:5694543-5694562 Msa1272200:intron 55.0%
CTTGTTGGCCGTCGTTGAGT+AGG + chr8_3:5695902-5695921 Msa1272200:CDS 55.0%
GGCCAAACCCTACTCAACGA+CGG - chr8_3:5695913-5695932 None:intergenic 55.0%
! CATGGCAGGGTCTTGGCTCT+CGG - chr8_3:5694129-5694148 None:intergenic 60.0%
ACAAAGCGACCGGCATGGCA+GGG - chr8_3:5694142-5694161 None:intergenic 60.0%
TGACGGCGTCACAAAGCGAC+CGG - chr8_3:5694152-5694171 None:intergenic 60.0%
TTAGGTGTGTTGGGCTCCGG+AGG + chr8_3:5694456-5694475 Msa1272200:intron 60.0%
CTTAAGGCCTGCCTTGACCC+TGG - chr8_3:5694486-5694505 None:intergenic 60.0%
CAGGGTCAAGGCAGGCCTTA+AGG + chr8_3:5694484-5694503 Msa1272200:intron 60.0%
CTCCCAGCGTGAGGACTCTT+TGG - chr8_3:5694548-5694567 None:intergenic 60.0%
AAGAGTCCTCACGCTGGGAG+CGG + chr8_3:5694548-5694567 Msa1272200:intron 60.0%
TATATCCCGCTCCCAGCGTG+AGG - chr8_3:5694557-5694576 None:intergenic 60.0%
! CATGCGGGTAGTGGTGTGCA+GGG + chr8_3:5695377-5695396 Msa1272200:intron 60.0%
! ATGCGGGTAGTGGTGTGCAG+GGG + chr8_3:5695378-5695397 Msa1272200:intron 60.0%
GGCCGTCGTTGAGTAGGGTT+TGG + chr8_3:5695908-5695927 Msa1272200:exon 60.0%
! AGGGTCTTGGCTCTCGGCCA+TGG - chr8_3:5694123-5694142 None:intergenic 65.0%
GAGCCAAGACCCTGCCATGC+CGG + chr8_3:5694130-5694149 Msa1272200:intron 65.0%
CACAAAGCGACCGGCATGGC+AGG - chr8_3:5694143-5694162 None:intergenic 65.0%
GCGTCACAAAGCGACCGGCA+TGG - chr8_3:5694147-5694166 None:intergenic 65.0%
CAGCCCAAAAGGTGGGCCAG+TGG - chr8_3:5694389-5694408 None:intergenic 65.0%
CCTTGACCCTGGTGAGCCTC+CGG - chr8_3:5694475-5694494 None:intergenic 65.0%
AGGCTCACCAGGGTCAAGGC+AGG + chr8_3:5694476-5694495 Msa1272200:intron 65.0%
AGAGTCCTCACGCTGGGAGC+GGG + chr8_3:5694549-5694568 Msa1272200:intron 65.0%
CCTGCACACCACTACCCGCA+TGG - chr8_3:5695379-5695398 None:intergenic 65.0%
! CCATGCGGGTAGTGGTGTGC+AGG + chr8_3:5695376-5695395 Msa1272200:intron 65.0%
CGACCGGCATGGCAGGGTCT+TGG - chr8_3:5694136-5694155 None:intergenic 70.0%
TTGGGCTCCGGAGGCTCACC+AGG + chr8_3:5694465-5694484 Msa1272200:intron 70.0%
TGGGCTCCGGAGGCTCACCA+GGG + chr8_3:5694466-5694485 Msa1272200:intron 70.0%
CCGGAGGCTCACCAGGGTCA+AGG + chr8_3:5694472-5694491 Msa1272200:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 5692275 5696260 5692275 ID=Msa1272200;Name=Msa1272200
chr8_3 mRNA 5692275 5696260 5692275 ID=Msa1272200-mRNA-1;Parent=Msa1272200;Name=Msa1272200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=145|1|1|1|1|1|7|337|135
chr8_3 exon 5692275 5692504 5692275 ID=Msa1272200-mRNA-1:exon:2058;Parent=Msa1272200-mRNA-1
chr8_3 exon 5692606 5692664 5692606 ID=Msa1272200-mRNA-1:exon:2059;Parent=Msa1272200-mRNA-1
chr8_3 exon 5692762 5692812 5692762 ID=Msa1272200-mRNA-1:exon:2060;Parent=Msa1272200-mRNA-1
chr8_3 exon 5693590 5693655 5693590 ID=Msa1272200-mRNA-1:exon:2061;Parent=Msa1272200-mRNA-1
chr8_3 exon 5693744 5693791 5693744 ID=Msa1272200-mRNA-1:exon:2062;Parent=Msa1272200-mRNA-1
chr8_3 exon 5695560 5695589 5695560 ID=Msa1272200-mRNA-1:exon:2063;Parent=Msa1272200-mRNA-1
chr8_3 exon 5695855 5696260 5695855 ID=Msa1272200-mRNA-1:exon:2064;Parent=Msa1272200-mRNA-1
chr8_3 five_prime_UTR 5692275 5692419 5692275 ID=Msa1272200-mRNA-1:five_prime_utr;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5692420 5692504 5692420 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5692606 5692664 5692606 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5692762 5692812 5692762 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5693590 5693655 5693590 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5693744 5693791 5693744 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5695560 5695589 5695560 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 CDS 5695855 5695923 5695855 ID=Msa1272200-mRNA-1:cds;Parent=Msa1272200-mRNA-1
chr8_3 three_prime_UTR 5695924 5696260 5695924 ID=Msa1272200-mRNA-1:three_prime_utr;Parent=Msa1272200-mRNA-1
Gene Sequence

>Msa1272200

ATGGCTTCCACATTTCTCACCATACCAACAACTCCCTTCCTTCACAAAAACCCCACCGCTTCTTTCTCCAACCAGAGACTCCCAATTTTGAAGAGGAACTCTTTGAAGGTTAATGCAATTGCTAAGAAATGGGAACCCTCTAAGGTTGTGCCTCAGGCTGATAGGGTTCTTATTCGTCTTGAGGAGTTATCAGACAAAACTGCTGGTGGAATTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAGTCCTAAATGTTGGTGCCGAGGCTGAAAATGTAAAAGCTGGCTCGAAGGTACTATTCACCGACATAAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCATTAAATCAAGTGACTTGTTGGCCGTCGTTGAGTAG

Protein sequence

>Msa1272200

MASTFLTIPTTPFLHKNPTASFSNQRLPILKRNSLKVNAIAKKWEPSKVVPQADRVLIRLEELSDKTAGGILLPKSAVKFERYLVGEVLNVGAEAENVKAGSKVLFTDINAYEVDLGTDAKHCFIKSSDLLAVVE*