AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037840 MtrunA17_Chr1g0212421 95.902 122 5 0 37 158 1 122 8.41e-82 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037840 AT5G08535.4 61.404 114 34 2 46 158 12 116 8.47e-37 123
Msa0037840 AT5G08535.2 61.404 114 34 2 46 158 12 116 8.47e-37 123
Msa0037840 AT5G08535.3 61.404 114 34 2 46 158 12 116 8.47e-37 123
Msa0037840 AT5G08535.1 61.404 114 34 3 46 158 37 141 1.15e-36 123
Msa0037840 AT3G52350.1 57.983 119 41 3 41 158 70 180 7.26e-31 110

Find 53 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTAATATAGGGTTTC+AGG 0.106839 1_1:+67019705 Msa0037840:CDS
ACAATCAACTCTTCTAATAT+AGG 0.290837 1_1:+67019697 Msa0037840:CDS
TACCTGCTTATTGTCTCCTT+TGG 0.305621 1_1:-67020505 None:intergenic
AGAGTACCCCGTATGGGTTT+TGG 0.312465 1_1:+67023513 Msa0037840:three_prime_UTR
CAATCAACTCTTCTAATATA+GGG 0.322273 1_1:+67019698 Msa0037840:CDS
GCGCTTTCTTTAGAGAGTTC+TGG 0.323271 1_1:+67023015 Msa0037840:CDS
ATGATAGGCCATGTCCTTCC+TGG 0.332353 1_1:+67023323 Msa0037840:three_prime_UTR
AAGAATAATAAACGAGGTTT+GGG 0.354264 1_1:+67020432 Msa0037840:CDS
CCAGGATACTTACAGGATAT+AGG 0.358028 1_1:+67023166 Msa0037840:three_prime_UTR
CTGCTTATTGTCTCCTTTGG+AGG 0.363940 1_1:-67020502 None:intergenic
AAAGAATAATAAACGAGGTT+TGG 0.364649 1_1:+67020431 Msa0037840:CDS
TGGAAAGAAGGGACTGGTCT+TGG 0.385117 1_1:+67019851 Msa0037840:CDS
CCTATATCCTGTAAGTATCC+TGG 0.397988 1_1:-67023166 None:intergenic
AAGCCAAAGCACTTTCTAAA+CGG 0.409716 1_1:+67022940 Msa0037840:CDS
CGACGTTTCTTCCATGGCTA+TGG 0.409832 1_1:-67019659 None:intergenic
CACCCGTTTAGAAAGTGCTT+TGG 0.422675 1_1:-67022943 None:intergenic
ATGTGTCAAATGTGCAAGTA+TGG 0.429149 1_1:+67023484 Msa0037840:three_prime_UTR
TTGGAGGAATCACCGTGATC+AGG 0.437824 1_1:-67020486 None:intergenic
AAGAAGCATGGTTGGAAAGA+AGG 0.444986 1_1:+67019839 Msa0037840:CDS
GATAAATATACAAAATTCAG+AGG 0.460514 1_1:+67023293 Msa0037840:three_prime_UTR
AGCCAAAGCACTTTCTAAAC+GGG 0.461909 1_1:+67022941 Msa0037840:CDS
AACTCATCCAAAACCCATAC+GGG 0.478312 1_1:-67023520 None:intergenic
TGGTCTTGGAATCTCTGAGC+AGG 0.482435 1_1:+67019865 Msa0037840:CDS
ACTAAGAAAGTGAATGCAAA+AGG 0.483023 1_1:-67023092 None:intergenic
TTCAGAGGGAAGGTAATGAT+AGG 0.500568 1_1:+67023308 Msa0037840:three_prime_UTR
CTATATCCTGTAAGTATCCT+GGG 0.500671 1_1:-67023165 None:intergenic
TAAACTCGACGTTTCTTCCA+TGG 0.501987 1_1:-67019665 None:intergenic
TGAAAAGAAGATGCAAGAGA+AGG 0.518345 1_1:+67022983 Msa0037840:CDS
TTCTTTACACGAGTTTCCAC+AGG 0.518432 1_1:-67020414 None:intergenic
CAACTCATCCAAAACCCATA+CGG 0.528929 1_1:-67023521 None:intergenic
TAGTGGTTGAAGTCCTGAAA+AGG 0.542963 1_1:-67023387 None:intergenic
AGAAGCATGGTTGGAAAGAA+GGG 0.546784 1_1:+67019840 Msa0037840:CDS
GGAGAGGAGAAGAGACAGAG+AGG 0.551960 1_1:+67019401 None:intergenic
AGCAGATATAGCGAAGAAGA+AGG 0.552241 1_1:+67020455 Msa0037840:CDS
GTTCTTGAGAGTACCCCGTA+TGG 0.558523 1_1:+67023506 Msa0037840:three_prime_UTR
TTTCAAAGTCGTGTGCAAGT+TGG 0.562551 1_1:+67023126 Msa0037840:three_prime_UTR
GAGGAGAAGAGACAGAGAGG+AGG 0.567527 1_1:+67019404 Msa0037840:CDS
TTCTTGAGAGTACCCCGTAT+GGG 0.578616 1_1:+67023507 Msa0037840:three_prime_UTR
CTCCAAAGGAGACAATAAGC+AGG 0.587624 1_1:+67020503 Msa0037840:CDS
CTTGTGTAAATCCATAGCCA+TGG 0.590413 1_1:+67019648 Msa0037840:CDS
GGAAGTGTCTTTAGAGCTAG+TGG 0.595771 1_1:-67023404 None:intergenic
AAATGTATGAGAATTGATGA+TGG 0.601449 1_1:+67023043 Msa0037840:exon
ATATACAAAATTCAGAGGGA+AGG 0.608055 1_1:+67023298 Msa0037840:three_prime_UTR
CATGGTTGGAAAGAAGGGAC+TGG 0.614326 1_1:+67019845 Msa0037840:CDS
GATCACGGTGATTCCTCCAA+AGG 0.624641 1_1:+67020489 Msa0037840:CDS
ACAGGGTAGATTAGAACCTG+TGG 0.628498 1_1:+67020398 Msa0037840:intron
AATGTATGAGAATTGATGAT+GGG 0.631074 1_1:+67023044 Msa0037840:exon
AAGAATATATAAAATACATG+TGG 0.634241 1_1:-67023425 None:intergenic
GTGTGCAAGTTGGATCTCGA+AGG 0.648173 1_1:+67023136 Msa0037840:three_prime_UTR
ATAAATATACAAAATTCAGA+GGG 0.657730 1_1:+67023294 Msa0037840:three_prime_UTR
AAGGTTGTGAAACCTGATCA+CGG 0.667061 1_1:+67020474 Msa0037840:CDS
CGTGTAAAGAATAATAAACG+AGG 0.690122 1_1:+67020426 Msa0037840:CDS
ACTCATCCAAAACCCATACG+GGG 0.756814 1_1:-67023519 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATATATTTAAAGTG+GGG + chr1_1:67021682-67021701 Msa0037840:intron 10.0%
!! AAGAAAAAGAAAAAAAAAAA+AGG - chr1_1:67023253-67023272 None:intergenic 10.0%
!! TGTGCATTTAAATTAAATTA+GGG - chr1_1:67020140-67020159 None:intergenic 15.0%
!! ATGTGCATTTAAATTAAATT+AGG - chr1_1:67020141-67020160 None:intergenic 15.0%
!! TTAAATTAGTATAAGATTGT+AGG + chr1_1:67020207-67020226 Msa0037840:intron 15.0%
!! AATAGAATTATGCAAATAAT+AGG + chr1_1:67020926-67020945 Msa0037840:intron 15.0%
!! ATAGAATTATGCAAATAATA+GGG + chr1_1:67020927-67020946 Msa0037840:intron 15.0%
!! TATGCATTCTTAAAAAAAAA+TGG + chr1_1:67021123-67021142 Msa0037840:intron 15.0%
!! TTCTTAAAAAAAAATGGAAA+AGG + chr1_1:67021129-67021148 Msa0037840:intron 15.0%
!! TCTTAAAAAAAAATGGAAAA+GGG + chr1_1:67021130-67021149 Msa0037840:intron 15.0%
!! AATTATTAGAAAGAAAATTG+AGG + chr1_1:67022040-67022059 Msa0037840:intron 15.0%
!! TATAAAAATAAAAAAGCTGT+AGG + chr1_1:67022385-67022404 Msa0037840:intron 15.0%
!! ATAAAAATAAAAAAGCTGTA+GGG + chr1_1:67022386-67022405 Msa0037840:intron 15.0%
!! ATAAATATACAAAATTCAGA+GGG + chr1_1:67023294-67023313 Msa0037840:three_prime_UTR 15.0%
!! AAGAATATATAAAATACATG+TGG - chr1_1:67023428-67023447 None:intergenic 15.0%
!! TGAAAGAATTGATATGAAAT+TGG - chr1_1:67019512-67019531 None:intergenic 20.0%
!! GAAAATAGAAAATGAAAGAA+GGG - chr1_1:67019745-67019764 None:intergenic 20.0%
!! TGAAAATAGAAAATGAAAGA+AGG - chr1_1:67019746-67019765 None:intergenic 20.0%
!!! TTAATTTGATCTTTCAATGA+AGG - chr1_1:67019919-67019938 None:intergenic 20.0%
!! TCAAATTAATTCTTATGTCT+AGG + chr1_1:67020106-67020125 Msa0037840:intron 20.0%
!!! TTTAATTTAAATGCACATTC+AGG + chr1_1:67020143-67020162 Msa0037840:intron 20.0%
!! TTAATTTAAATGCACATTCA+GGG + chr1_1:67020144-67020163 Msa0037840:intron 20.0%
!!! TCTGATACACAATTTTATTT+TGG + chr1_1:67020373-67020392 Msa0037840:intron 20.0%
!!! ACAATTTTATTTTGGTAACA+GGG + chr1_1:67020381-67020400 Msa0037840:intron 20.0%
!! TAACAATTTACAATAGTAGA+AGG + chr1_1:67020575-67020594 Msa0037840:intron 20.0%
!! AACAATTTACAATAGTAGAA+GGG + chr1_1:67020576-67020595 Msa0037840:intron 20.0%
!! AACTACATAACTATGTAAAA+CGG + chr1_1:67020600-67020619 Msa0037840:intron 20.0%
!!! TTATTTTATTGAATTTGGTG+AGG + chr1_1:67020743-67020762 Msa0037840:intron 20.0%
!! ATCATTTGTAATCAAATGAA+TGG + chr1_1:67020862-67020881 Msa0037840:intron 20.0%
!! CTTAAAAAAAAATGGAAAAG+GGG + chr1_1:67021131-67021150 Msa0037840:intron 20.0%
!! ACCTCAAAAATATATATGAA+GGG + chr1_1:67021216-67021235 Msa0037840:intron 20.0%
!! TTGAACTAATAAACACTTTA+CGG + chr1_1:67021263-67021282 Msa0037840:intron 20.0%
!! ATTCATTTCTTAGATATGTT+TGG - chr1_1:67021365-67021384 None:intergenic 20.0%
!!! ACTATATTTTGCTTTTACTT+TGG - chr1_1:67021507-67021526 None:intergenic 20.0%
!!! TTCTCTTATTTGAGTTTAAA+GGG - chr1_1:67021775-67021794 None:intergenic 20.0%
!! AAGTAAAGTGAATTAAAAAG+AGG + chr1_1:67021885-67021904 Msa0037840:intron 20.0%
!! CTATCTCAAGATTTAATAAA+TGG + chr1_1:67022243-67022262 Msa0037840:intron 20.0%
!!! ATGCTTATTTTAAGATATTC+TGG - chr1_1:67022354-67022373 None:intergenic 20.0%
!! AGAATATCTTAAAATAAGCA+TGG + chr1_1:67022353-67022372 Msa0037840:intron 20.0%
!!! TTTTTTTCAGAGAGAAAAAA+GGG - chr1_1:67022496-67022515 None:intergenic 20.0%
!!! CATTTCTTTTTAATTTGAAG+AGG - chr1_1:67022624-67022643 None:intergenic 20.0%
!! CTCTTCAAATTAAAAAGAAA+TGG + chr1_1:67022622-67022641 Msa0037840:intron 20.0%
!! ATGGTAAAAACTTCAAAAAT+AGG + chr1_1:67022641-67022660 Msa0037840:intron 20.0%
!! AAACTTCAAAAATAGGAAAT+AGG + chr1_1:67022648-67022667 Msa0037840:intron 20.0%
!! TCATATTTAACAATAATGCA+AGG + chr1_1:67022747-67022766 Msa0037840:intron 20.0%
!! CATATTTAACAATAATGCAA+GGG + chr1_1:67022748-67022767 Msa0037840:intron 20.0%
!!! TTTTCAGTCATTTGAATTTT+TGG + chr1_1:67022829-67022848 Msa0037840:intron 20.0%
!!! TTTTTTTTTTTGCAAACAGA+AGG + chr1_1:67023190-67023209 Msa0037840:three_prime_UTR 20.0%
!! ACTATTTACAGATGAAAAAA+AGG - chr1_1:67023227-67023246 None:intergenic 20.0%
!! GATAAATATACAAAATTCAG+AGG + chr1_1:67023293-67023312 Msa0037840:three_prime_UTR 20.0%
!!! ATTTTTTTTTTAAACCAGGA+AGG - chr1_1:67023340-67023359 None:intergenic 20.0%
!! TTCCTGGTTTAAAAAAAAAA+TGG + chr1_1:67023339-67023358 Msa0037840:three_prime_UTR 20.0%
!! CTGTTCAACAATTTCTTTTA+AGG + chr1_1:67019548-67019567 Msa0037840:intron 25.0%
!!! AATTTCTTTTAAGGCTTCAA+GGG + chr1_1:67019557-67019576 Msa0037840:intron 25.0%
! ACAATCAACTCTTCTAATAT+AGG + chr1_1:67019697-67019716 Msa0037840:CDS 25.0%
! CAATCAACTCTTCTAATATA+GGG + chr1_1:67019698-67019717 Msa0037840:CDS 25.0%
! TCTTATACTAATTTAACCCA+AGG - chr1_1:67020203-67020222 None:intergenic 25.0%
! TAAGATTGTAGGTTAATTGA+TGG + chr1_1:67020218-67020237 Msa0037840:intron 25.0%
! TACAAGAGAAATACTGAAAT+AGG - chr1_1:67020317-67020336 None:intergenic 25.0%
!!! TTGTATTCTGAAACAGTTTT+AGG + chr1_1:67020332-67020351 Msa0037840:intron 25.0%
!!! TGTATTCTGAAACAGTTTTA+GGG + chr1_1:67020333-67020352 Msa0037840:intron 25.0%
!!! CACAATTTTATTTTGGTAAC+AGG + chr1_1:67020380-67020399 Msa0037840:intron 25.0%
! AAAGAATAATAAACGAGGTT+TGG + chr1_1:67020431-67020450 Msa0037840:CDS 25.0%
! AAGAATAATAAACGAGGTTT+GGG + chr1_1:67020432-67020451 Msa0037840:CDS 25.0%
! ACCTAAAATAAGAAAACCTT+CGG - chr1_1:67020667-67020686 None:intergenic 25.0%
! AGATATACTTTGTTGACATA+TGG + chr1_1:67020829-67020848 Msa0037840:intron 25.0%
!!! AAACCATATATTTGCTATAC+AGG + chr1_1:67021064-67021083 Msa0037840:intron 25.0%
! GACCTCAAAAATATATATGA+AGG + chr1_1:67021215-67021234 Msa0037840:intron 25.0%
!! GTTCTCTTATTTGAGTTTAA+AGG - chr1_1:67021776-67021795 None:intergenic 25.0%
!!! TGAAAACAAATCTTTTTGAG+AGG - chr1_1:67021918-67021937 None:intergenic 25.0%
! TTCTACCATCTCTATTATAA+AGG - chr1_1:67022069-67022088 None:intergenic 25.0%
! TCTAAATCATTCTTAATGTC+AGG - chr1_1:67022213-67022232 None:intergenic 25.0%
! TGACATTAAGAATGATTTAG+AGG + chr1_1:67022212-67022231 Msa0037840:intron 25.0%
! TAATAAATGGCATAACTGTA+AGG + chr1_1:67022256-67022275 Msa0037840:intron 25.0%
!! CTTTTATATTGAACAACTCT+AGG + chr1_1:67022413-67022432 Msa0037840:intron 25.0%
!!! TTTTTTCAGAGAGAAAAAAG+GGG - chr1_1:67022495-67022514 None:intergenic 25.0%
!!! GTTTTTTTCAGAGAGAAAAA+AGG - chr1_1:67022497-67022516 None:intergenic 25.0%
!!! TTCTTTTTAATTTGAAGAGG+AGG - chr1_1:67022621-67022640 None:intergenic 25.0%
! ATAATATGATATCCGTGAAA+GGG - chr1_1:67022780-67022799 None:intergenic 25.0%
! TATAATATGATATCCGTGAA+AGG - chr1_1:67022781-67022800 None:intergenic 25.0%
! TGACTGAAAATGAAAAACAA+CGG - chr1_1:67022819-67022838 None:intergenic 25.0%
!! ATCAATTCTCATACATTTTC+AGG - chr1_1:67023041-67023060 None:intergenic 25.0%
! AAATGTATGAGAATTGATGA+TGG + chr1_1:67023043-67023062 Msa0037840:exon 25.0%
!! AATGTATGAGAATTGATGAT+GGG + chr1_1:67023044-67023063 Msa0037840:exon 25.0%
!!! CACCATTTTTTTTTTAAACC+AGG - chr1_1:67023344-67023363 None:intergenic 25.0%
!!! CAATTTCTTTTAAGGCTTCA+AGG + chr1_1:67019556-67019575 Msa0037840:intron 30.0%
! GTTTTACGATGTATTTTCAG+TGG + chr1_1:67019579-67019598 Msa0037840:intron 30.0%
!! ACCTTTAAGGGCATTAAATT+TGG + chr1_1:67020075-67020094 Msa0037840:intron 30.0%
TCCAAATTTAATGCCCTTAA+AGG - chr1_1:67020079-67020098 None:intergenic 30.0%
AATTGCATATTTAGTAGCCT+TGG + chr1_1:67020183-67020202 Msa0037840:intron 30.0%
ATTGCATATTTAGTAGCCTT+GGG + chr1_1:67020184-67020203 Msa0037840:intron 30.0%
TGTTTATATCAGTTCTCCTT+AGG - chr1_1:67020248-67020267 None:intergenic 30.0%
!!! GTATTCTGAAACAGTTTTAG+GGG + chr1_1:67020334-67020353 Msa0037840:intron 30.0%
!!! GTGTATCAGAATTTTTTGCA+AGG - chr1_1:67020363-67020382 None:intergenic 30.0%
CGTGTAAAGAATAATAAACG+AGG + chr1_1:67020426-67020445 Msa0037840:CDS 30.0%
!! AAAGTTTGCTTTTGTTCTCA+AGG + chr1_1:67020536-67020555 Msa0037840:intron 30.0%
!! AAGTTTGCTTTTGTTCTCAA+GGG + chr1_1:67020537-67020556 Msa0037840:intron 30.0%
!! CTGAGTTTTTCATTTGGAAT+TGG + chr1_1:67020625-67020644 Msa0037840:intron 30.0%
!! TTTTATTGAATTTGGTGAGG+TGG + chr1_1:67020746-67020765 Msa0037840:intron 30.0%
! TTTATTGAATTTGGTGAGGT+GGG + chr1_1:67020747-67020766 Msa0037840:intron 30.0%
! TGGTATAGTACTTGGTAATT+AGG + chr1_1:67020773-67020792 Msa0037840:intron 30.0%
! ATATCTGTCTCTAAGAACAA+AGG + chr1_1:67020900-67020919 Msa0037840:intron 30.0%
GTAGATTTATAATACGACTC+AGG - chr1_1:67020960-67020979 None:intergenic 30.0%
AGTCGTATTATAAATCTACG+AGG + chr1_1:67020961-67020980 Msa0037840:intron 30.0%
GTCGTATTATAAATCTACGA+GGG + chr1_1:67020962-67020981 Msa0037840:intron 30.0%
CAACCTGTATAGCAAATATA+TGG - chr1_1:67021070-67021089 None:intergenic 30.0%
!! ATATTTGCTATACAGGTTGA+TGG + chr1_1:67021071-67021090 Msa0037840:intron 30.0%
!! GCCCTTCATATATATTTTTG+AGG - chr1_1:67021220-67021239 None:intergenic 30.0%
AAACACTTTACGGTAACTAT+AGG + chr1_1:67021273-67021292 Msa0037840:intron 30.0%
TAACTATAGGTGTGCATTAA+AGG + chr1_1:67021286-67021305 Msa0037840:intron 30.0%
GTGTTTGTAGTTTCTAAACT+TGG - chr1_1:67021539-67021558 None:intergenic 30.0%
ACAAACACATCATAACATAG+AGG + chr1_1:67021551-67021570 Msa0037840:intron 30.0%
AACATAGAGGTGAAAATAAG+AGG + chr1_1:67021564-67021583 Msa0037840:intron 30.0%
TGAAAATAAGAGGACCTAAA+GGG + chr1_1:67021574-67021593 Msa0037840:intron 30.0%
GTTTGTCATACAAAGTGATA+GGG + chr1_1:67021832-67021851 Msa0037840:intron 30.0%
TTTGTCATACAAAGTGATAG+GGG + chr1_1:67021833-67021852 Msa0037840:intron 30.0%
! ATAAAGATGAGTTGAATGAG+TGG + chr1_1:67021980-67021999 Msa0037840:intron 30.0%
ATCCAATTTACTCTTCTTAC+AGG - chr1_1:67022139-67022158 None:intergenic 30.0%
TGTAAGAAGAGTAAATTGGA+TGG + chr1_1:67022138-67022157 Msa0037840:intron 30.0%
AGTCCAATTGTTATAGACAA+AGG + chr1_1:67022166-67022185 Msa0037840:intron 30.0%
GTCCAATTGTTATAGACAAA+GGG + chr1_1:67022167-67022186 Msa0037840:intron 30.0%
ATTGAACAACTCTAGGTAAT+TGG + chr1_1:67022420-67022439 Msa0037840:intron 30.0%
TTTCACATTTGTCATTCTGA+TGG + chr1_1:67022525-67022544 Msa0037840:intron 30.0%
TCATGTGTATGTTTCACTAA+AGG + chr1_1:67022573-67022592 Msa0037840:intron 30.0%
CATGTGTATGTTTCACTAAA+GGG + chr1_1:67022574-67022593 Msa0037840:intron 30.0%
TAATATGATATCCGTGAAAG+GGG - chr1_1:67022779-67022798 None:intergenic 30.0%
! ATTTGATTTCCTGTTGTTGA+TGG + chr1_1:67022881-67022900 Msa0037840:intron 30.0%
ACTAAGAAAGTGAATGCAAA+AGG - chr1_1:67023095-67023114 None:intergenic 30.0%
! TTTTCGATTCTTCTGTACAA+TGG + chr1_1:67023271-67023290 Msa0037840:three_prime_UTR 30.0%
ATATACAAAATTCAGAGGGA+AGG + chr1_1:67023298-67023317 Msa0037840:three_prime_UTR 30.0%
! ATATTGTGTTCATCCTTTTC+AGG + chr1_1:67023374-67023393 Msa0037840:three_prime_UTR 30.0%
! ACGATGTATTTTCAGTGGTT+TGG + chr1_1:67019584-67019603 Msa0037840:intron 35.0%
CTCTTCTAATATAGGGTTTC+AGG + chr1_1:67019705-67019724 Msa0037840:CDS 35.0%
CTACTAAATATGCAATTCCC+TGG - chr1_1:67020180-67020199 None:intergenic 35.0%
!!! GCCGAAGGTTTTCTTATTTT+AGG + chr1_1:67020663-67020682 Msa0037840:intron 35.0%
! TTATTGAATTTGGTGAGGTG+GGG + chr1_1:67020748-67020767 Msa0037840:intron 35.0%
AAACCAGCTTTGCTTATGTT+TGG + chr1_1:67021027-67021046 Msa0037840:intron 35.0%
AACCAGCTTTGCTTATGTTT+GGG + chr1_1:67021028-67021047 Msa0037840:intron 35.0%
! GAGAATCTAGAGAGGTTTTA+TGG + chr1_1:67021161-67021180 Msa0037840:intron 35.0%
!! ATCTAGAGAGGTTTTATGGA+AGG + chr1_1:67021165-67021184 Msa0037840:intron 35.0%
CTATCTATCTCTATCTCTCT+TGG - chr1_1:67021432-67021451 None:intergenic 35.0%
GTGAAAATAAGAGGACCTAA+AGG + chr1_1:67021573-67021592 Msa0037840:intron 35.0%
GAAAATAAGAGGACCTAAAG+GGG + chr1_1:67021575-67021594 Msa0037840:intron 35.0%
TTCTCACATTTGTAGTACCT+TGG + chr1_1:67021809-67021828 Msa0037840:intron 35.0%
TCTCACATTTGTAGTACCTT+GGG + chr1_1:67021810-67021829 Msa0037840:intron 35.0%
GGTTTGTCATACAAAGTGAT+AGG + chr1_1:67021831-67021850 Msa0037840:intron 35.0%
GGTAGCCTTTATAATAGAGA+TGG + chr1_1:67022061-67022080 Msa0037840:intron 35.0%
CACCTGTAAGAAGAGTAAAT+TGG + chr1_1:67022134-67022153 Msa0037840:intron 35.0%
CTCCCTTTGTCTATAACAAT+TGG - chr1_1:67022172-67022191 None:intergenic 35.0%
TTTGTCATTCTGATGGTACT+TGG + chr1_1:67022532-67022551 Msa0037840:intron 35.0%
ACTATCCTGTATTGAATCAG+TGG + chr1_1:67022717-67022736 Msa0037840:intron 35.0%
CTATCCTGTATTGAATCAGT+GGG + chr1_1:67022718-67022737 Msa0037840:intron 35.0%
GATATCAACTCGAATTACTG+CGG + chr1_1:67022851-67022870 Msa0037840:intron 35.0%
AATTGAAGTCCATCAACAAC+AGG - chr1_1:67022893-67022912 None:intergenic 35.0%
! GATGGACTTCAATTGATTTC+AGG + chr1_1:67022899-67022918 Msa0037840:intron 35.0%
! AAGCCAAAGCACTTTCTAAA+CGG + chr1_1:67022940-67022959 Msa0037840:CDS 35.0%
TGAAAAGAAGATGCAAGAGA+AGG + chr1_1:67022983-67023002 Msa0037840:CDS 35.0%
CTATATCCTGTAAGTATCCT+GGG - chr1_1:67023168-67023187 None:intergenic 35.0%
! TTTTTAAACCAGGAAGGACA+TGG - chr1_1:67023334-67023353 None:intergenic 35.0%
ATGTGTCAAATGTGCAAGTA+TGG + chr1_1:67023484-67023503 Msa0037840:three_prime_UTR 35.0%
CTTGTGTAAATCCATAGCCA+TGG + chr1_1:67019648-67019667 Msa0037840:CDS 40.0%
TAAACTCGACGTTTCTTCCA+TGG - chr1_1:67019668-67019687 None:intergenic 40.0%
!! CTGTAGCTTTTGAAGAAGCA+TGG + chr1_1:67019827-67019846 Msa0037840:intron 40.0%
!! AGCTTTTGAAGAAGCATGGT+TGG + chr1_1:67019831-67019850 Msa0037840:intron 40.0%
! AAGAAGCATGGTTGGAAAGA+AGG + chr1_1:67019839-67019858 Msa0037840:CDS 40.0%
! AGAAGCATGGTTGGAAAGAA+GGG + chr1_1:67019840-67019859 Msa0037840:CDS 40.0%
ACGATACTATCATGTCTGTG+CGG + chr1_1:67019972-67019991 Msa0037840:intron 40.0%
ATTCAGGGACTAATTTGACC+AGG + chr1_1:67020159-67020178 Msa0037840:intron 40.0%
TTCAGGGACTAATTTGACCA+GGG + chr1_1:67020160-67020179 Msa0037840:intron 40.0%
GTTAATTGATGGAACGCCTA+AGG + chr1_1:67020229-67020248 Msa0037840:intron 40.0%
TTCTTTACACGAGTTTCCAC+AGG - chr1_1:67020417-67020436 None:intergenic 40.0%
AGCAGATATAGCGAAGAAGA+AGG + chr1_1:67020455-67020474 Msa0037840:CDS 40.0%
AAGGTTGTGAAACCTGATCA+CGG + chr1_1:67020474-67020493 Msa0037840:CDS 40.0%
TACCTGCTTATTGTCTCCTT+TGG - chr1_1:67020508-67020527 None:intergenic 40.0%
! GCTTTTGTTCTCAAGGGTTT+TGG + chr1_1:67020543-67020562 Msa0037840:intron 40.0%
!! ACGGTGCTGAGTTTTTCATT+TGG + chr1_1:67020619-67020638 Msa0037840:intron 40.0%
AAATTTGCAATAGCTGCCGA+AGG + chr1_1:67020648-67020667 Msa0037840:intron 40.0%
! TTAGGTAGTACTAGCTTGTC+AGG + chr1_1:67020681-67020700 Msa0037840:intron 40.0%
! TATTGAATTTGGTGAGGTGG+GGG + chr1_1:67020749-67020768 Msa0037840:intron 40.0%
GCAAGATAGAGAATCTAGAG+AGG + chr1_1:67021153-67021172 Msa0037840:intron 40.0%
! TTGCGACAATCTTTAGAAGC+AGG + chr1_1:67021471-67021490 Msa0037840:intron 40.0%
GGCAATATTGGGAGTTCTTA+TGG - chr1_1:67021638-67021657 None:intergenic 40.0%
AGTGCAGAAGTGGCAATATT+GGG - chr1_1:67021649-67021668 None:intergenic 40.0%
AAGTGCAGAAGTGGCAATAT+TGG - chr1_1:67021650-67021669 None:intergenic 40.0%
GTTTGTATGAAGTGCAGAAG+TGG - chr1_1:67021659-67021678 None:intergenic 40.0%
CACTTTGTATGACAAACCCA+AGG - chr1_1:67021829-67021848 None:intergenic 40.0%
! AATCCCGACTTATGGTGTTT+TGG + chr1_1:67022087-67022106 Msa0037840:intron 40.0%
! ATCCCGACTTATGGTGTTTT+GGG + chr1_1:67022088-67022107 Msa0037840:intron 40.0%
ATGCCCAAAACACCATAAGT+CGG - chr1_1:67022094-67022113 None:intergenic 40.0%
TTATAGACAAAGGGAGACCA+AGG + chr1_1:67022176-67022195 Msa0037840:intron 40.0%
! GTCAGGTCTATCATTTTCCT+TGG - chr1_1:67022196-67022215 None:intergenic 40.0%
GAGTCTGCTACAAAGATCAA+TGG - chr1_1:67022285-67022304 None:intergenic 40.0%
TTGTAGCAGACTCTACATAG+TGG + chr1_1:67022292-67022311 Msa0037840:intron 40.0%
TGTAGCAGACTCTACATAGT+GGG + chr1_1:67022293-67022312 Msa0037840:intron 40.0%
! AGACTCTACATAGTGGGAAA+AGG + chr1_1:67022299-67022318 Msa0037840:intron 40.0%
TTCAGAGAGAAAAAAGGGGA+GGG - chr1_1:67022491-67022510 None:intergenic 40.0%
TTTCAGAGAGAAAAAAGGGG+AGG - chr1_1:67022492-67022511 None:intergenic 40.0%
! AGCCAAAGCACTTTCTAAAC+GGG + chr1_1:67022941-67022960 Msa0037840:CDS 40.0%
TTTCAAAGTCGTGTGCAAGT+TGG + chr1_1:67023126-67023145 Msa0037840:three_prime_UTR 40.0%
! TGTTTTCCCAGGATACTTAC+AGG + chr1_1:67023159-67023178 Msa0037840:three_prime_UTR 40.0%
CCTATATCCTGTAAGTATCC+TGG - chr1_1:67023169-67023188 None:intergenic 40.0%
CCAGGATACTTACAGGATAT+AGG + chr1_1:67023166-67023185 Msa0037840:three_prime_UTR 40.0%
TTCAGAGGGAAGGTAATGAT+AGG + chr1_1:67023308-67023327 Msa0037840:three_prime_UTR 40.0%
TAGTGGTTGAAGTCCTGAAA+AGG - chr1_1:67023390-67023409 None:intergenic 40.0%
AACTCATCCAAAACCCATAC+GGG - chr1_1:67023523-67023542 None:intergenic 40.0%
CAACTCATCCAAAACCCATA+CGG - chr1_1:67023524-67023543 None:intergenic 40.0%
CGATACTATCATGTCTGTGC+GGG + chr1_1:67019973-67019992 Msa0037840:intron 45.0%
! CTTCTGATTGAAGGCGTGTT+CGG - chr1_1:67020019-67020038 None:intergenic 45.0%
! ACGCCTTCAATCAGAAGTGT+CGG + chr1_1:67020022-67020041 Msa0037840:intron 45.0%
ATGGGGGAAGCTACCTTTAA+GGG + chr1_1:67020063-67020082 Msa0037840:intron 45.0%
ACAGGGTAGATTAGAACCTG+TGG + chr1_1:67020398-67020417 Msa0037840:intron 45.0%
CTGCTTATTGTCTCCTTTGG+AGG - chr1_1:67020505-67020524 None:intergenic 45.0%
CTCCAAAGGAGACAATAAGC+AGG + chr1_1:67020503-67020522 Msa0037840:CDS 45.0%
CTCCCAAACATAAGCAAAGC+TGG - chr1_1:67021033-67021052 None:intergenic 45.0%
! CGACAATCTTTAGAAGCAGG+TGG + chr1_1:67021474-67021493 Msa0037840:intron 45.0%
CTGACATTGTATGCCCCTTT+AGG - chr1_1:67021591-67021610 None:intergenic 45.0%
GATGGTAGAATCCCGACTTA+TGG + chr1_1:67022079-67022098 Msa0037840:intron 45.0%
TGCCCAAAACACCATAAGTC+GGG - chr1_1:67022093-67022112 None:intergenic 45.0%
TCAGAGAGAAAAAAGGGGAG+GGG - chr1_1:67022490-67022509 None:intergenic 45.0%
!! CTGTCCCACTGATTCAATAC+AGG - chr1_1:67022725-67022744 None:intergenic 45.0%
!! CACCCGTTTAGAAAGTGCTT+TGG - chr1_1:67022946-67022965 None:intergenic 45.0%
! GCGCTTTCTTTAGAGAGTTC+TGG + chr1_1:67023015-67023034 Msa0037840:CDS 45.0%
!! GGAAGTGTCTTTAGAGCTAG+TGG - chr1_1:67023407-67023426 None:intergenic 45.0%
!! TTCTTGAGAGTACCCCGTAT+GGG + chr1_1:67023507-67023526 Msa0037840:three_prime_UTR 45.0%
ACTCATCCAAAACCCATACG+GGG - chr1_1:67023522-67023541 None:intergenic 45.0%
!!! CGTATGGGTTTTGGATGAGT+TGG + chr1_1:67023522-67023541 Msa0037840:three_prime_UTR 45.0%
!! AAATTCAATAAAATAAAATA+AGG - chr1_1:67020739-67020758 None:intergenic 5.0%
!!! TTATTTTATTTTATTGAATT+TGG + chr1_1:67020738-67020757 Msa0037840:intron 5.0%
!! AATTAAAAATATATTTAAAG+TGG + chr1_1:67021680-67021699 Msa0037840:intron 5.0%
!!! ATTAAAAATATATTTAAAGT+GGG + chr1_1:67021681-67021700 Msa0037840:intron 5.0%
CGACGTTTCTTCCATGGCTA+TGG - chr1_1:67019662-67019681 None:intergenic 50.0%
CATGGTTGGAAAGAAGGGAC+TGG + chr1_1:67019845-67019864 Msa0037840:CDS 50.0%
!! TGGAAAGAAGGGACTGGTCT+TGG + chr1_1:67019851-67019870 Msa0037840:CDS 50.0%
! TGGTCTTGGAATCTCTGAGC+AGG + chr1_1:67019865-67019884 Msa0037840:CDS 50.0%
! GCACCGACACTTCTGATTGA+AGG - chr1_1:67020028-67020047 None:intergenic 50.0%
!! TGCCTTTGAAGTCCCTGGAT+GGG + chr1_1:67020045-67020064 Msa0037840:intron 50.0%
GATGGGGGAAGCTACCTTTA+AGG + chr1_1:67020062-67020081 Msa0037840:intron 50.0%
TTGGAGGAATCACCGTGATC+AGG - chr1_1:67020489-67020508 None:intergenic 50.0%
GATCACGGTGATTCCTCCAA+AGG + chr1_1:67020489-67020508 Msa0037840:CDS 50.0%
!! GTGGGGGTTGGTATAGTACT+TGG + chr1_1:67020765-67020784 Msa0037840:intron 50.0%
CAGAGAGAAAAAAGGGGAGG+GGG - chr1_1:67022489-67022508 None:intergenic 50.0%
CAAGGGAAAAGCCCCTTTCA+CGG + chr1_1:67022765-67022784 Msa0037840:intron 50.0%
! GTGTGCAAGTTGGATCTCGA+AGG + chr1_1:67023136-67023155 Msa0037840:three_prime_UTR 50.0%
!!! GATCTCGAAGGTGTTTTCCC+AGG + chr1_1:67023148-67023167 Msa0037840:three_prime_UTR 50.0%
ATGATAGGCCATGTCCTTCC+TGG + chr1_1:67023323-67023342 Msa0037840:three_prime_UTR 50.0%
!! GTTCTTGAGAGTACCCCGTA+TGG + chr1_1:67023506-67023525 Msa0037840:three_prime_UTR 50.0%
!! AGAGTACCCCGTATGGGTTT+TGG + chr1_1:67023513-67023532 Msa0037840:three_prime_UTR 50.0%
GAGGAGAAGAGACAGAGAGG+AGG + chr1_1:67019404-67019423 Msa0037840:CDS 55.0%
!! GTGCCTTTGAAGTCCCTGGA+TGG + chr1_1:67020044-67020063 Msa0037840:intron 55.0%
!! GCCTTTGAAGTCCCTGGATG+GGG + chr1_1:67020046-67020065 Msa0037840:intron 55.0%
!! CCTTTGAAGTCCCTGGATGG+GGG + chr1_1:67020047-67020066 Msa0037840:intron 55.0%
AAGGTAGCTTCCCCCATCCA+GGG - chr1_1:67020060-67020079 None:intergenic 55.0%
AAAGGTAGCTTCCCCCATCC+AGG - chr1_1:67020061-67020080 None:intergenic 55.0%
! GAATTTGGTGAGGTGGGGGT+TGG + chr1_1:67020753-67020772 Msa0037840:intron 55.0%
GGGGTGACGTTGCACAATAG+TGG + chr1_1:67021701-67021720 Msa0037840:intron 55.0%
!! GTCGGTGCCTTTGAAGTCCC+TGG + chr1_1:67020040-67020059 Msa0037840:intron 60.0%
CCCCCATCCAGGGACTTCAA+AGG - chr1_1:67020050-67020069 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67019402 67023656 67019402 ID=Msa0037840;Name=Msa0037840
chr1_1 mRNA 67019402 67023656 67019402 ID=Msa0037840-mRNA-1;Parent=Msa0037840;Name=Msa0037840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|0.75|0.8|5|604|158
chr1_1 exon 67019402 67019484 67019402 ID=Msa0037840-mRNA-1:exon:21680;Parent=Msa0037840-mRNA-1
chr1_1 exon 67019642 67019726 67019642 ID=Msa0037840-mRNA-1:exon:21681;Parent=Msa0037840-mRNA-1
chr1_1 exon 67019833 67019886 67019833 ID=Msa0037840-mRNA-1:exon:21682;Parent=Msa0037840-mRNA-1
chr1_1 exon 67020402 67020524 67020402 ID=Msa0037840-mRNA-1:exon:21683;Parent=Msa0037840-mRNA-1
chr1_1 exon 67022921 67023656 67022921 ID=Msa0037840-mRNA-1:exon:21684;Parent=Msa0037840-mRNA-1
chr1_1 CDS 67019402 67019484 67019402 ID=Msa0037840-mRNA-1:cds;Parent=Msa0037840-mRNA-1
chr1_1 CDS 67019642 67019726 67019642 ID=Msa0037840-mRNA-1:cds;Parent=Msa0037840-mRNA-1
chr1_1 CDS 67019833 67019886 67019833 ID=Msa0037840-mRNA-1:cds;Parent=Msa0037840-mRNA-1
chr1_1 CDS 67020402 67020524 67020402 ID=Msa0037840-mRNA-1:cds;Parent=Msa0037840-mRNA-1
chr1_1 CDS 67022921 67023052 67022921 ID=Msa0037840-mRNA-1:cds;Parent=Msa0037840-mRNA-1
chr1_1 three_prime_UTR 67023053 67023656 67023053 ID=Msa0037840-mRNA-1:three_prime_utr;Parent=Msa0037840-mRNA-1
Gene Sequence

>Msa0037840

GAGAGGAGAAGAGACAGAGAGGAGGAGAAAAGAAAAAGAAGAACACGACACGACACGACAAGAAAAGCTCTGATCAATTCGATATTAAGCTTGTGTAAATCCATAGCCATGGAAGAAACGTCGAGTTTAGCAACAACAACAATCAACTCTTCTAATATAGGGTTTCAGCTTTTGAAGAAGCATGGTTGGAAAGAAGGGACTGGTCTTGGAATCTCTGAGCAGGGTAGATTAGAACCTGTGGAAACTCGTGTAAAGAATAATAAACGAGGTTTGGGAGCAGATATAGCGAAGAAGAAGGTTGTGAAACCTGATCACGGTGATTCCTCCAAAGGAGACAATAAGCAGGAACAGTTGTCTCAAAAGAAAGCCAAAGCACTTTCTAAACGGGTGAGAAAGATGCAAGAGATTGAAAAGAAGATGCAAGAGAAGGAATTCGAGCGCGCTTTCTTTAGAGAGTTCTGGCCTGAAAATGTATGA

Protein sequence

>Msa0037840

ERRRDREEEKRKRRTRHDTTRKALINSILSLCKSIAMEETSSLATTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIAKKKVVKPDHGDSSKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV*