Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023888.t1 | RHN46952.1 | 69 | 290 | 84 | 5 | 2 | 289 | 84 | 369 | 6.10E-103 | 384 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023888.t1 | G7L4M6 | 69.0 | 290 | 84 | 5 | 2 | 289 | 84 | 369 | 4.4e-103 | 384.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023888.t1 | MTR_7g077620 | 68.729 | 291 | 85 | 5 | 2 | 290 | 84 | 370 | 1.60e-133 | 384 |
MS.gene023888.t1 | MTR_7g077660 | 68.493 | 292 | 84 | 6 | 3 | 292 | 83 | 368 | 4.87e-128 | 369 |
MS.gene023888.t1 | MTR_7g077650 | 66.000 | 300 | 85 | 5 | 1 | 292 | 82 | 372 | 9.52e-126 | 363 |
MS.gene023888.t1 | MTR_7g076110 | 54.515 | 299 | 121 | 6 | 3 | 292 | 21 | 313 | 1.11e-100 | 297 |
MS.gene023888.t1 | MTR_7g076100 | 63.180 | 239 | 81 | 4 | 57 | 292 | 66 | 300 | 1.19e-93 | 279 |
MS.gene023888.t1 | MTR_1g108740 | 42.712 | 295 | 140 | 11 | 1 | 290 | 74 | 344 | 5.05e-57 | 187 |
MS.gene023888.t1 | MTR_5g038260 | 41.806 | 299 | 133 | 12 | 24 | 292 | 96 | 383 | 1.40e-53 | 179 |
MS.gene023888.t1 | MTR_5g038230 | 38.983 | 295 | 117 | 11 | 24 | 290 | 94 | 353 | 8.93e-46 | 158 |
MS.gene023888.t1 | MTR_1g064570 | 36.578 | 339 | 151 | 15 | 3 | 292 | 77 | 400 | 7.76e-45 | 156 |
MS.gene023888.t1 | MTR_5g082770 | 45.495 | 222 | 95 | 7 | 15 | 224 | 81 | 288 | 8.31e-43 | 148 |
MS.gene023888.t1 | MTR_7g076130 | 60.317 | 126 | 45 | 2 | 87 | 209 | 25 | 148 | 5.19e-41 | 139 |
MS.gene023888.t1 | MTR_5g082780 | 40.789 | 228 | 102 | 8 | 34 | 248 | 2 | 209 | 4.73e-38 | 134 |
MS.gene023888.t1 | MTR_1g016150 | 43.478 | 115 | 62 | 3 | 1 | 114 | 83 | 195 | 3.06e-22 | 93.2 |
MS.gene023888.t1 | MTR_6g023955 | 48.000 | 75 | 38 | 1 | 60 | 133 | 74 | 148 | 2.74e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGGTGATAAGAAGAATTT+AGG | 0.132686 | 7.1:-26100739 | MS.gene023888:CDS |
AAAGAGCAAGCCAATCATTT+TGG | 0.202770 | 7.1:-26101218 | MS.gene023888:CDS |
CAAACTCCACATTCACAAAT+TGG | 0.228054 | 7.1:-26100914 | MS.gene023888:CDS |
TTCTCGTAGCAAGTAAAATT+AGG | 0.229231 | 7.1:+26101063 | None:intergenic |
AATGAACAAACTTGAGAGTT+TGG | 0.291432 | 7.1:-26100860 | MS.gene023888:CDS |
TGTTCACCTAATACAATATA+TGG | 0.299029 | 7.1:+26101027 | None:intergenic |
AGTACTCCATATATTGTATT+AGG | 0.310368 | 7.1:-26101033 | MS.gene023888:CDS |
CCATGGTTGGCTTGCATTAA+CGG | 0.321484 | 7.1:-26101409 | MS.gene023888:CDS |
GGAGCTACACTGTACTTAAA+AGG | 0.330559 | 7.1:+26101357 | None:intergenic |
GAAGGATGGGATAATTGAAT+AGG | 0.335830 | 7.1:+26101468 | None:intergenic |
TAATCACTTGGGCTTGTAAT+GGG | 0.338599 | 7.1:+26101282 | None:intergenic |
TTCGAGAGGTGGCAGAATAA+TGG | 0.341176 | 7.1:+26101335 | None:intergenic |
CTCCAAGTTGGAAAAGGATT+CGG | 0.375437 | 7.1:-26100776 | MS.gene023888:CDS |
TTACACAAATCCAAAATGAT+TGG | 0.383794 | 7.1:+26101208 | None:intergenic |
AAAAGGATTCACTAGAGTTA+TGG | 0.384998 | 7.1:+26101374 | None:intergenic |
AGCCTCTTGTTTCTCCAAGT+TGG | 0.404761 | 7.1:-26100788 | MS.gene023888:CDS |
GGGTTCTACCACAATTTCAA+TGG | 0.408660 | 7.1:-26100636 | MS.gene023888:CDS |
TCTCGTAGCAAGTAAAATTA+GGG | 0.412405 | 7.1:+26101064 | None:intergenic |
AAGGTGATAAGAAGAATTTA+GGG | 0.425808 | 7.1:-26100738 | MS.gene023888:CDS |
TCGAGAGGTGGCAGAATAAT+GGG | 0.430593 | 7.1:+26101336 | None:intergenic |
TTGTTTCTCCAAGTTGGAAA+AGG | 0.437802 | 7.1:-26100782 | MS.gene023888:CDS |
AAGCCAACCATGGCTACAAC+CGG | 0.461155 | 7.1:+26101419 | None:intergenic |
TACTTTCAATGATGGAAGGA+TGG | 0.467431 | 7.1:+26101454 | None:intergenic |
ATGAGGATTATTCAGCTTGA+AGG | 0.468472 | 7.1:+26101104 | None:intergenic |
ATAATCACTTGGGCTTGTAA+TGG | 0.476686 | 7.1:+26101281 | None:intergenic |
AAGGATGGGATAATTGAATA+GGG | 0.479464 | 7.1:+26101469 | None:intergenic |
GGTTCTACCACAATTTCAAT+GGG | 0.480142 | 7.1:-26100635 | MS.gene023888:CDS |
ACCTCTCGAAGCTGTTTACA+AGG | 0.482941 | 7.1:-26101322 | MS.gene023888:CDS |
AATCATTGATCGGAGACATA+TGG | 0.483154 | 7.1:-26100972 | MS.gene023888:CDS |
TGGCCGGTTGTAGCCATGGT+TGG | 0.485159 | 7.1:-26101422 | MS.gene023888:CDS |
GAGATCTATAATGTGAATGA+TGG | 0.493399 | 7.1:-26100712 | MS.gene023888:CDS |
TACAAGCCCAAGTGATTATG+TGG | 0.499442 | 7.1:-26101277 | MS.gene023888:CDS |
ACTTTCAATGATGGAAGGAT+GGG | 0.503431 | 7.1:+26101455 | None:intergenic |
CGCGGCTATCAGCAAATACC+AGG | 0.511548 | 7.1:+26101142 | None:intergenic |
TATTTCGTGAAATCATTGAT+CGG | 0.545544 | 7.1:-26100982 | MS.gene023888:CDS |
CTAGTTCCAATTTGTGAATG+TGG | 0.551800 | 7.1:+26100908 | None:intergenic |
ATGTGAATGATGGAAGCTTA+CGG | 0.552571 | 7.1:-26100702 | MS.gene023888:CDS |
GCGGCAACCACATAATCACT+TGG | 0.553476 | 7.1:+26101270 | None:intergenic |
TGCATTCGCTCGAAGGAAAG+TGG | 0.562548 | 7.1:+26100667 | None:intergenic |
TGTAATGGGGTCAGCAGACA+AGG | 0.568289 | 7.1:+26101296 | None:intergenic |
GGTCAATCCCATTGAAATTG+TGG | 0.574786 | 7.1:+26100628 | None:intergenic |
CCGTTAATGCAAGCCAACCA+TGG | 0.592476 | 7.1:+26101409 | None:intergenic |
TTCCAACTTGGAGAAACAAG+AGG | 0.597328 | 7.1:+26100786 | None:intergenic |
AATCACTTGGGCTTGTAATG+GGG | 0.606028 | 7.1:+26101283 | None:intergenic |
GTTGCCGCGATTTACAATTG+TGG | 0.606120 | 7.1:-26101255 | MS.gene023888:CDS |
AACTTGGAGAAACAAGAGGC+TGG | 0.606698 | 7.1:+26100790 | None:intergenic |
TTGTAAACAGCTTCGAGAGG+TGG | 0.615094 | 7.1:+26101324 | None:intergenic |
ATTCAGCTTGAAGGATACAA+TGG | 0.618432 | 7.1:+26101113 | None:intergenic |
CTGGTATTTGCTGATAGCCG+CGG | 0.626838 | 7.1:-26101141 | MS.gene023888:CDS |
CGGCAACCACATAATCACTT+GGG | 0.631654 | 7.1:+26101271 | None:intergenic |
TCATTTGAGTCATCACAATG+AGG | 0.645711 | 7.1:+26101087 | None:intergenic |
AGGATACAATGGTATTTCCG+CGG | 0.667549 | 7.1:+26101124 | None:intergenic |
ATGATTTCACGAAATAAACA+TGG | 0.672773 | 7.1:+26100989 | None:intergenic |
ATTGATCGGAGACATATGGA+TGG | 0.674233 | 7.1:-26100968 | MS.gene023888:CDS |
ACCTTGTAAACAGCTTCGAG+AGG | 0.677454 | 7.1:+26101321 | None:intergenic |
GCATAGAAGTTGAATCACCA+CGG | 0.688735 | 7.1:+26100812 | None:intergenic |
AAAACCACAATTGTAAATCG+CGG | 0.692121 | 7.1:+26101251 | None:intergenic |
TTGGAACTAGACGTCCAGAG+TGG | 0.702846 | 7.1:-26100895 | MS.gene023888:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAACATTTTACTTTCAATGA+TGG | + | chr7.1:26100673-26100692 | None:intergenic | 20.0% |
!!! | ACTCATGTTGTATTTTATAA+AGG | - | chr7.1:26100951-26100970 | MS.gene023888:CDS | 20.0% |
!!! | CATTGAAAGTAAAATGTTTT+TGG | - | chr7.1:26100674-26100693 | MS.gene023888:CDS | 20.0% |
! | AAGGTGATAAGAAGAATTTA+GGG | - | chr7.1:26101378-26101397 | MS.gene023888:CDS | 25.0% |
! | AGTACTCCATATATTGTATT+AGG | - | chr7.1:26101083-26101102 | MS.gene023888:CDS | 25.0% |
! | ATGATTTCACGAAATAAACA+TGG | + | chr7.1:26101130-26101149 | None:intergenic | 25.0% |
! | TATTTCGTGAAATCATTGAT+CGG | - | chr7.1:26101134-26101153 | MS.gene023888:CDS | 25.0% |
! | TGTTCACCTAATACAATATA+TGG | + | chr7.1:26101092-26101111 | None:intergenic | 25.0% |
! | TTACACAAATCCAAAATGAT+TGG | + | chr7.1:26100911-26100930 | None:intergenic | 25.0% |
!!! | ATTTTACTTTCAATGATGGA+AGG | + | chr7.1:26100669-26100688 | None:intergenic | 25.0% |
!!! | GAAGACAACATTTTATTTGT+CGG | - | chr7.1:26101278-26101297 | MS.gene023888:CDS | 25.0% |
AAAACCACAATTGTAAATCG+CGG | + | chr7.1:26100868-26100887 | None:intergenic | 30.0% | |
AAAAGGATTCACTAGAGTTA+TGG | + | chr7.1:26100745-26100764 | None:intergenic | 30.0% | |
AAGGATGGGATAATTGAATA+GGG | + | chr7.1:26100650-26100669 | None:intergenic | 30.0% | |
AATGAACAAACTTGAGAGTT+TGG | - | chr7.1:26101256-26101275 | MS.gene023888:CDS | 30.0% | |
GAAGGTGATAAGAAGAATTT+AGG | - | chr7.1:26101377-26101396 | MS.gene023888:CDS | 30.0% | |
GAGATCTATAATGTGAATGA+TGG | - | chr7.1:26101404-26101423 | MS.gene023888:CDS | 30.0% | |
TCTCGTAGCAAGTAAAATTA+GGG | + | chr7.1:26101055-26101074 | None:intergenic | 30.0% | |
TTCTCGTAGCAAGTAAAATT+AGG | + | chr7.1:26101056-26101075 | None:intergenic | 30.0% | |
! | TGTTGTATTTTATAAAGGCC+TGG | - | chr7.1:26100956-26100975 | MS.gene023888:CDS | 30.0% |
!!! | GAAAGTAAAATGTTTTTGGC+CGG | - | chr7.1:26100678-26100697 | MS.gene023888:CDS | 30.0% |
!!! | TCGGTTTATTTTGTTTGTGA+AGG | - | chr7.1:26101359-26101378 | MS.gene023888:CDS | 30.0% |
AATCATTGATCGGAGACATA+TGG | - | chr7.1:26101144-26101163 | MS.gene023888:CDS | 35.0% | |
ATAATCACTTGGGCTTGTAA+TGG | + | chr7.1:26100838-26100857 | None:intergenic | 35.0% | |
ATGAGGATTATTCAGCTTGA+AGG | + | chr7.1:26101015-26101034 | None:intergenic | 35.0% | |
ATTCAGCTTGAAGGATACAA+TGG | + | chr7.1:26101006-26101025 | None:intergenic | 35.0% | |
CAAACTCCACATTCACAAAT+TGG | - | chr7.1:26101202-26101221 | MS.gene023888:CDS | 35.0% | |
CTAGTTCCAATTTGTGAATG+TGG | + | chr7.1:26101211-26101230 | None:intergenic | 35.0% | |
GAAGGATGGGATAATTGAAT+AGG | + | chr7.1:26100651-26100670 | None:intergenic | 35.0% | |
GGTTCTACCACAATTTCAAT+GGG | - | chr7.1:26101481-26101500 | MS.gene023888:CDS | 35.0% | |
TAATCACTTGGGCTTGTAAT+GGG | + | chr7.1:26100837-26100856 | None:intergenic | 35.0% | |
TCATTTGAGTCATCACAATG+AGG | + | chr7.1:26101032-26101051 | None:intergenic | 35.0% | |
! | AAAGAGCAAGCCAATCATTT+TGG | - | chr7.1:26100898-26100917 | MS.gene023888:CDS | 35.0% |
! | ACTTTCAATGATGGAAGGAT+GGG | + | chr7.1:26100664-26100683 | None:intergenic | 35.0% |
! | ATGTGAATGATGGAAGCTTA+CGG | - | chr7.1:26101414-26101433 | MS.gene023888:CDS | 35.0% |
! | TACTTTCAATGATGGAAGGA+TGG | + | chr7.1:26100665-26100684 | None:intergenic | 35.0% |
! | TTGTTTCTCCAAGTTGGAAA+AGG | - | chr7.1:26101334-26101353 | MS.gene023888:CDS | 35.0% |
!! | ATTTTATTTGTCGGAAACCG+TGG | - | chr7.1:26101287-26101306 | MS.gene023888:CDS | 35.0% |
!! | TTTGTTCAAGTTTTCCACTC+TGG | + | chr7.1:26101238-26101257 | None:intergenic | 35.0% |
AAAAAGTTGCATTCGCTCGA+AGG | + | chr7.1:26101459-26101478 | None:intergenic | 40.0% | |
AATCACTTGGGCTTGTAATG+GGG | + | chr7.1:26100836-26100855 | None:intergenic | 40.0% | |
AGGATACAATGGTATTTCCG+CGG | + | chr7.1:26100995-26101014 | None:intergenic | 40.0% | |
ATTGATCGGAGACATATGGA+TGG | - | chr7.1:26101148-26101167 | MS.gene023888:CDS | 40.0% | |
GCATAGAAGTTGAATCACCA+CGG | + | chr7.1:26101307-26101326 | None:intergenic | 40.0% | |
GGAGCTACACTGTACTTAAA+AGG | + | chr7.1:26100762-26100781 | None:intergenic | 40.0% | |
GGGTTCTACCACAATTTCAA+TGG | - | chr7.1:26101480-26101499 | MS.gene023888:CDS | 40.0% | |
TACAAGCCCAAGTGATTATG+TGG | - | chr7.1:26100839-26100858 | MS.gene023888:CDS | 40.0% | |
TTCCAACTTGGAGAAACAAG+AGG | + | chr7.1:26101333-26101352 | None:intergenic | 40.0% | |
! | AACCGAATCCTTTTCCAACT+TGG | + | chr7.1:26101345-26101364 | None:intergenic | 40.0% |
! | CTCCAAGTTGGAAAAGGATT+CGG | - | chr7.1:26101340-26101359 | MS.gene023888:CDS | 40.0% |
!!! | CGAGCGAATGCAACTTTTTT+GGG | - | chr7.1:26101460-26101479 | MS.gene023888:CDS | 40.0% |
!!! | TCGAGCGAATGCAACTTTTT+TGG | - | chr7.1:26101459-26101478 | MS.gene023888:CDS | 40.0% |
AACTTGGAGAAACAAGAGGC+TGG | + | chr7.1:26101329-26101348 | None:intergenic | 45.0% | |
ACCTCTCGAAGCTGTTTACA+AGG | - | chr7.1:26100794-26100813 | MS.gene023888:CDS | 45.0% | |
ACCTTGTAAACAGCTTCGAG+AGG | + | chr7.1:26100798-26100817 | None:intergenic | 45.0% | |
CGGCAACCACATAATCACTT+GGG | + | chr7.1:26100848-26100867 | None:intergenic | 45.0% | |
GTTGCCGCGATTTACAATTG+TGG | - | chr7.1:26100861-26100880 | MS.gene023888:CDS | 45.0% | |
TCGAGAGGTGGCAGAATAAT+GGG | + | chr7.1:26100783-26100802 | None:intergenic | 45.0% | |
TTCGAGAGGTGGCAGAATAA+TGG | + | chr7.1:26100784-26100803 | None:intergenic | 45.0% | |
TTGTAAACAGCTTCGAGAGG+TGG | + | chr7.1:26100795-26100814 | None:intergenic | 45.0% | |
! | AGCCTCTTGTTTCTCCAAGT+TGG | - | chr7.1:26101328-26101347 | MS.gene023888:CDS | 45.0% |
!! | CCATGGTTGGCTTGCATTAA+CGG | - | chr7.1:26100707-26100726 | MS.gene023888:CDS | 45.0% |
AAGCCAACCATGGCTACAAC+CGG | + | chr7.1:26100700-26100719 | None:intergenic | 50.0% | |
CCGTTAATGCAAGCCAACCA+TGG | + | chr7.1:26100710-26100729 | None:intergenic | 50.0% | |
GCGGCAACCACATAATCACT+TGG | + | chr7.1:26100849-26100868 | None:intergenic | 50.0% | |
TGCATTCGCTCGAAGGAAAG+TGG | + | chr7.1:26101452-26101471 | None:intergenic | 50.0% | |
TTGGAACTAGACGTCCAGAG+TGG | - | chr7.1:26101221-26101240 | MS.gene023888:CDS | 50.0% | |
! | CTGGTATTTGCTGATAGCCG+CGG | - | chr7.1:26100975-26100994 | MS.gene023888:CDS | 50.0% |
! | TGTAATGGGGTCAGCAGACA+AGG | + | chr7.1:26100823-26100842 | None:intergenic | 50.0% |
!! | TTTTTGGCCGGTTGTAGCCA+TGG | - | chr7.1:26100690-26100709 | MS.gene023888:CDS | 50.0% |
CGCGGCTATCAGCAAATACC+AGG | + | chr7.1:26100977-26100996 | None:intergenic | 55.0% | |
TGGCCGGTTGTAGCCATGGT+TGG | - | chr7.1:26100694-26100713 | MS.gene023888:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 26100630 | 26101508 | 26100630 | ID=MS.gene023888 |
chr7.1 | mRNA | 26100630 | 26101508 | 26100630 | ID=MS.gene023888.t1;Parent=MS.gene023888 |
chr7.1 | exon | 26100630 | 26101508 | 26100630 | ID=MS.gene023888.t1.exon1;Parent=MS.gene023888.t1 |
chr7.1 | CDS | 26100630 | 26101508 | 26100630 | ID=cds.MS.gene023888.t1;Parent=MS.gene023888.t1 |
Gene Sequence |
Protein sequence |