Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032780.t1 | XP_003613576.1 | 92.1 | 381 | 29 | 1 | 1 | 380 | 3 | 383 | 2.40E-216 | 761.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032780.t1 | G7K9R3 | 92.1 | 381 | 29 | 1 | 1 | 380 | 3 | 383 | 1.7e-216 | 761.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032780.t1 | MTR_5g038260 | 92.126 | 381 | 29 | 1 | 1 | 380 | 3 | 383 | 0.0 | 737 |
MS.gene032780.t1 | MTR_5g038230 | 84.474 | 380 | 34 | 2 | 1 | 380 | 1 | 355 | 0.0 | 659 |
MS.gene032780.t1 | MTR_1g064570 | 49.876 | 403 | 176 | 8 | 1 | 380 | 1 | 400 | 6.82e-131 | 381 |
MS.gene032780.t1 | MTR_1g108740 | 44.648 | 383 | 165 | 11 | 2 | 378 | 3 | 344 | 6.95e-97 | 292 |
MS.gene032780.t1 | MTR_5g082770 | 50.327 | 306 | 132 | 10 | 1 | 303 | 1 | 289 | 9.30e-86 | 262 |
MS.gene032780.t1 | MTR_7g077620 | 43.112 | 392 | 178 | 15 | 4 | 377 | 5 | 369 | 6.95e-81 | 253 |
MS.gene032780.t1 | MTR_7g077660 | 41.562 | 397 | 179 | 16 | 4 | 380 | 5 | 368 | 2.51e-76 | 240 |
MS.gene032780.t1 | MTR_7g077650 | 40.000 | 405 | 178 | 17 | 4 | 380 | 5 | 372 | 2.80e-72 | 230 |
MS.gene032780.t1 | MTR_5g082780 | 44.269 | 253 | 118 | 8 | 103 | 351 | 1 | 234 | 3.81e-55 | 181 |
MS.gene032780.t1 | MTR_7g076110 | 37.658 | 316 | 162 | 13 | 77 | 380 | 21 | 313 | 1.26e-45 | 159 |
MS.gene032780.t1 | MTR_1g016150 | 47.090 | 189 | 75 | 8 | 2 | 177 | 3 | 179 | 1.65e-45 | 156 |
MS.gene032780.t1 | MTR_1g016150 | 52.174 | 69 | 26 | 1 | 248 | 316 | 175 | 236 | 1.23e-12 | 67.4 |
MS.gene032780.t1 | MTR_7g076100 | 40.711 | 253 | 118 | 10 | 139 | 380 | 69 | 300 | 1.76e-38 | 140 |
MS.gene032780.t1 | MTR_7g076100 | 58.000 | 50 | 20 | 1 | 4 | 53 | 6 | 54 | 2.19e-11 | 64.7 |
MS.gene032780.t1 | MTR_1g108750 | 44.304 | 158 | 53 | 3 | 1 | 157 | 1 | 124 | 4.35e-27 | 104 |
MS.gene032780.t1 | MTR_6g023955 | 49.107 | 112 | 49 | 2 | 113 | 217 | 41 | 151 | 3.64e-25 | 102 |
MS.gene032780.t1 | MTR_6g023955 | 59.016 | 61 | 25 | 0 | 319 | 379 | 149 | 209 | 3.49e-19 | 85.5 |
MS.gene032780.t1 | MTR_3g114990 | 26.139 | 417 | 237 | 17 | 1 | 375 | 20 | 407 | 9.79e-21 | 93.2 |
MS.gene032780.t1 | MTR_3g114970 | 25.320 | 391 | 237 | 15 | 1 | 375 | 1 | 352 | 1.65e-18 | 86.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 78 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTATATTGCTCCTAAAT+TGG | 0.217987 | 5.2:+28340059 | None:intergenic |
TAATCATTTGGACTTGTTAT+AGG | 0.239358 | 5.2:+28339761 | None:intergenic |
TCTAATCAATTCCACTTAAA+AGG | 0.241393 | 5.2:+28339077 | None:intergenic |
AATAGTAAATTGAATCCTTT+TGG | 0.242301 | 5.2:+28339249 | None:intergenic |
TGGTGAGAAGGTTTATAAAT+AGG | 0.247820 | 5.2:-28339445 | MS.gene032780:CDS |
GCCACCCATTGATAATTATA+TGG | 0.280147 | 5.2:-28339834 | MS.gene032780:CDS |
ATACAAGACACTGACCATTT+TGG | 0.281472 | 5.2:-28339665 | MS.gene032780:CDS |
TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.2:-28339694 | MS.gene032780:CDS |
GGTGGTCGTGTTGATGATTA+AGG | 0.291776 | 5.2:+28340080 | None:intergenic |
CTTCTTTGTAACAAAACATT+TGG | 0.292647 | 5.2:+28339530 | None:intergenic |
ATCAACACGACCACCAATTT+AGG | 0.305762 | 5.2:-28340072 | MS.gene032780:CDS |
TTGTTATTCAAGTGACCCTT+GGG | 0.317511 | 5.2:-28339567 | MS.gene032780:CDS |
TTAAGCATTGTCAATTCTAA+TGG | 0.317587 | 5.2:+28339962 | None:intergenic |
ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.2:+28339863 | None:intergenic |
TTGTCGAAACTTGATAGTTT+AGG | 0.333402 | 5.2:-28339341 | MS.gene032780:CDS |
AATGGATACACTCTATTTGC+AGG | 0.334507 | 5.2:+28339980 | None:intergenic |
TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.2:-28340141 | MS.gene032780:CDS |
CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5.2:-28340136 | MS.gene032780:CDS |
TCAATGGGTGGCAAACTAAT+AGG | 0.355817 | 5.2:+28339845 | None:intergenic |
GCATAGCCATGGAGCGAGAT+TGG | 0.373158 | 5.2:-28340210 | None:intergenic |
TTCTTTACATGTATTTAAGC+TGG | 0.384189 | 5.2:-28339396 | MS.gene032780:CDS |
CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5.2:+28340136 | None:intergenic |
GGTGAGAAGGTTTATAAATA+GGG | 0.399787 | 5.2:-28339444 | MS.gene032780:CDS |
AATGTAAAGCATGGAAGCTT+TGG | 0.406802 | 5.2:-28339161 | MS.gene032780:CDS |
TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.2:-28339483 | MS.gene032780:CDS |
CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.2:-28339633 | MS.gene032780:CDS |
GCTGCAACCACATAATCATT+TGG | 0.420868 | 5.2:+28339749 | None:intergenic |
TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.2:+28339651 | None:intergenic |
AAAAGGTGGCACAACCCATA+TGG | 0.429129 | 5.2:+28339094 | None:intergenic |
AAGGTATGACACCTCCCATA+TGG | 0.446486 | 5.2:-28339109 | MS.gene032780:CDS |
TCAAAAGGACCTCTAGGATA+AGG | 0.452966 | 5.2:+28339197 | None:intergenic |
CATAGCCATGGAGCGAGATT+GGG | 0.453674 | 5.2:-28340209 | None:intergenic |
ACATACCATATAATTATCAA+TGG | 0.458488 | 5.2:+28339829 | None:intergenic |
GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.2:-28339457 | MS.gene032780:CDS |
TTTGTTATTCAAGTGACCCT+TGG | 0.473541 | 5.2:-28339568 | MS.gene032780:CDS |
TTTCACAAGTTACCTCCAAA+AGG | 0.492359 | 5.2:-28339264 | MS.gene032780:CDS |
TGTGCATAAGGTTACATTGT+CGG | 0.510731 | 5.2:-28339789 | MS.gene032780:CDS |
TTCAAGTGACCCTTGGGGTG+AGG | 0.511989 | 5.2:-28339561 | MS.gene032780:CDS |
CCTTACGAATCTTACTTCAA+AGG | 0.516564 | 5.2:-28339128 | MS.gene032780:CDS |
AACAAGTCCAAATGATTATG+TGG | 0.518480 | 5.2:-28339756 | MS.gene032780:CDS |
AGGTATGACACCTCCCATAT+GGG | 0.519021 | 5.2:-28339108 | MS.gene032780:CDS |
TTGTAGATTCCCATATCAAA+AGG | 0.521611 | 5.2:+28339182 | None:intergenic |
TTATATTGCTCCTAAATTGG+TGG | 0.526613 | 5.2:+28340062 | None:intergenic |
TCTGAAGGGATCATTAACAT+AGG | 0.526975 | 5.2:+28340037 | None:intergenic |
TTGGTTCTGTCTGCAAAAGT+TGG | 0.528423 | 5.2:-28340117 | MS.gene032780:CDS |
AAAGGTGGCACAACCCATAT+GGG | 0.532965 | 5.2:+28339095 | None:intergenic |
GTTGTGGCTCAAGTCATGGC+TGG | 0.535182 | 5.2:-28339928 | MS.gene032780:CDS |
GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.2:+28339488 | None:intergenic |
TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.2:-28339707 | MS.gene032780:CDS |
TTACGACTACAATGTGCATA+AGG | 0.543562 | 5.2:-28339801 | MS.gene032780:CDS |
GGAATCTACAATGTAAAGCA+TGG | 0.547492 | 5.2:-28339170 | MS.gene032780:CDS |
TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.2:-28339479 | MS.gene032780:CDS |
GGACCTCTAGGATAAGGAAT+CGG | 0.552728 | 5.2:+28339203 | None:intergenic |
CTTAACAACAAGAGATGTTG+TGG | 0.558782 | 5.2:-28339944 | MS.gene032780:CDS |
CATACCATATAATTATCAAT+GGG | 0.559700 | 5.2:+28339830 | None:intergenic |
CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.2:+28339191 | None:intergenic |
ACGAAGAAGATGTCATCACT+TGG | 0.564031 | 5.2:-28339892 | MS.gene032780:CDS |
TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.2:-28339480 | MS.gene032780:CDS |
GGAATTCTTTCCTCACCCCA+AGG | 0.565481 | 5.2:+28339551 | None:intergenic |
ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.2:-28339638 | MS.gene032780:CDS |
GAATTCTTTCCTCACCCCAA+GGG | 0.583805 | 5.2:+28339552 | None:intergenic |
GTTTGCCCAATCTCGCTCCA+TGG | 0.583904 | 5.2:+28340204 | None:intergenic |
AAGCTGGAATTGAATGACAA+AGG | 0.588980 | 5.2:-28339380 | MS.gene032780:CDS |
CTTTGAAGTAAGATTCGTAA+GGG | 0.597220 | 5.2:+28339129 | None:intergenic |
TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5.2:-28339613 | MS.gene032780:CDS |
AATCAATTCCACTTAAAAGG+TGG | 0.605003 | 5.2:+28339080 | None:intergenic |
CCTTTGAAGTAAGATTCGTA+AGG | 0.605298 | 5.2:+28339128 | None:intergenic |
AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.2:-28339469 | MS.gene032780:CDS |
ACCATATAATTATCAATGGG+TGG | 0.612189 | 5.2:+28339833 | None:intergenic |
CGAAGAAGATGTCATCACTT+GGG | 0.631876 | 5.2:-28339891 | MS.gene032780:CDS |
AGATGTTGTGGCTCAAGTCA+TGG | 0.635745 | 5.2:-28339932 | MS.gene032780:CDS |
TTATGAAAGCTAGACAGCCA+CGG | 0.638641 | 5.2:+28339714 | None:intergenic |
GAACCGATTCCTTATCCTAG+AGG | 0.645299 | 5.2:-28339206 | MS.gene032780:CDS |
AGGGTCAACAATATCAACAA+AGG | 0.663310 | 5.2:-28339425 | MS.gene032780:CDS |
TGTTATTCAAGTGACCCTTG+GGG | 0.675329 | 5.2:-28339566 | MS.gene032780:CDS |
GCAGCAATTTACACTGACCG+TGG | 0.685734 | 5.2:-28339731 | MS.gene032780:CDS |
ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.2:-28339465 | MS.gene032780:CDS |
GGTGGCACAACCCATATGGG+AGG | 0.700789 | 5.2:+28339098 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATACCATATAATTATCAA+TGG | + | chr5.2:28339458-28339477 | None:intergenic | 20.0% |
!! | CATACCATATAATTATCAAT+GGG | + | chr5.2:28339457-28339476 | None:intergenic | 20.0% |
!! | TACTTATTTAGTGAAATCAT+TGG | - | chr5.2:28339801-28339820 | MS.gene032780:CDS | 20.0% |
!!! | AATAGTAAATTGAATCCTTT+TGG | + | chr5.2:28340038-28340057 | None:intergenic | 20.0% |
!!! | AATATTTTATTTGTAGGTGA+CGG | - | chr5.2:28339970-28339989 | MS.gene032780:CDS | 20.0% |
! | CTTCTTTGTAACAAAACATT+TGG | + | chr5.2:28339757-28339776 | None:intergenic | 25.0% |
! | GATTTCACTAAATAAGTAAG+TGG | + | chr5.2:28339799-28339818 | None:intergenic | 25.0% |
! | TATTTAGTGAAATCATTGGA+GGG | - | chr5.2:28339805-28339824 | MS.gene032780:CDS | 25.0% |
! | TTATTTAGTGAAATCATTGG+AGG | - | chr5.2:28339804-28339823 | MS.gene032780:CDS | 25.0% |
! | TTCTTTACATGTATTTAAGC+TGG | - | chr5.2:28339888-28339907 | MS.gene032780:CDS | 25.0% |
!! | TTAAGCATTGTCAATTCTAA+TGG | + | chr5.2:28339325-28339344 | None:intergenic | 25.0% |
!!! | AATTTTTTTCCAACGAGTTA+CGG | + | chr5.2:28339683-28339702 | None:intergenic | 25.0% |
!!! | GGAGACAATATTTTATTTGT+AGG | - | chr5.2:28339964-28339983 | MS.gene032780:CDS | 25.0% |
!!! | TAATCATTTGGACTTGTTAT+AGG | + | chr5.2:28339526-28339545 | None:intergenic | 25.0% |
AACAAGTCCAAATGATTATG+TGG | - | chr5.2:28339528-28339547 | MS.gene032780:CDS | 30.0% | |
ACCATATAATTATCAATGGG+TGG | + | chr5.2:28339454-28339473 | None:intergenic | 30.0% | |
ATCGACATTACATTCTACAA+TGG | - | chr5.2:28339646-28339665 | MS.gene032780:CDS | 30.0% | |
CATTACATTCTACAATGGTT+TGG | - | chr5.2:28339651-28339670 | MS.gene032780:CDS | 30.0% | |
GCATTATATTGCTCCTAAAT+TGG | + | chr5.2:28339228-28339247 | None:intergenic | 30.0% | |
GGTGAGAAGGTTTATAAATA+GGG | - | chr5.2:28339840-28339859 | MS.gene032780:CDS | 30.0% | |
TAATGTCGATGAAACCAAAA+TGG | + | chr5.2:28339636-28339655 | None:intergenic | 30.0% | |
TGGTGAGAAGGTTTATAAAT+AGG | - | chr5.2:28339839-28339858 | MS.gene032780:CDS | 30.0% | |
TTATATTGCTCCTAAATTGG+TGG | + | chr5.2:28339225-28339244 | None:intergenic | 30.0% | |
TTGAACCAATTGATCACATT+TGG | - | chr5.2:28339143-28339162 | MS.gene032780:CDS | 30.0% | |
TTGTAGATTCCCATATCAAA+AGG | + | chr5.2:28340105-28340124 | None:intergenic | 30.0% | |
! | AGTAAATTGAATCCTTTTGG+AGG | + | chr5.2:28340035-28340054 | None:intergenic | 30.0% |
! | TTGTCGAAACTTGATAGTTT+AGG | - | chr5.2:28339943-28339962 | MS.gene032780:CDS | 30.0% |
!! | CTTTGAAGTAAGATTCGTAA+GGG | + | chr5.2:28340158-28340177 | None:intergenic | 30.0% |
AAGCTGGAATTGAATGACAA+AGG | - | chr5.2:28339904-28339923 | MS.gene032780:CDS | 35.0% | |
AATGGATACACTCTATTTGC+AGG | + | chr5.2:28339307-28339326 | None:intergenic | 35.0% | |
AATGTAAAGCATGGAAGCTT+TGG | - | chr5.2:28340123-28340142 | MS.gene032780:CDS | 35.0% | |
AGGGTCAACAATATCAACAA+AGG | - | chr5.2:28339859-28339878 | MS.gene032780:CDS | 35.0% | |
ATAGGAGCAACATCCTTAAA+AGG | + | chr5.2:28339424-28339443 | None:intergenic | 35.0% | |
CCAAACCAAATGTGATCAAT+TGG | + | chr5.2:28339151-28339170 | None:intergenic | 35.0% | |
CCAATTGATCACATTTGGTT+TGG | - | chr5.2:28339148-28339167 | MS.gene032780:CDS | 35.0% | |
CCTTACGAATCTTACTTCAA+AGG | - | chr5.2:28340156-28340175 | MS.gene032780:CDS | 35.0% | |
CTTAACAACAAGAGATGTTG+TGG | - | chr5.2:28339340-28339359 | MS.gene032780:CDS | 35.0% | |
GGAATCTACAATGTAAAGCA+TGG | - | chr5.2:28340114-28340133 | MS.gene032780:CDS | 35.0% | |
TCTGAAGGGATCATTAACAT+AGG | + | chr5.2:28339250-28339269 | None:intergenic | 35.0% | |
TGTGCATAAGGTTACATTGT+CGG | - | chr5.2:28339495-28339514 | MS.gene032780:CDS | 35.0% | |
TTACGACTACAATGTGCATA+AGG | - | chr5.2:28339483-28339502 | MS.gene032780:CDS | 35.0% | |
TTTCACAAGTTACCTCCAAA+AGG | - | chr5.2:28340020-28340039 | MS.gene032780:CDS | 35.0% | |
! | ATACAAGACACTGACCATTT+TGG | - | chr5.2:28339619-28339638 | MS.gene032780:CDS | 35.0% |
! | GCCACCCATTGATAATTATA+TGG | - | chr5.2:28339450-28339469 | MS.gene032780:CDS | 35.0% |
! | TAAAAGCAGGACAAGAGTTT+TGG | - | chr5.2:28339590-28339609 | MS.gene032780:CDS | 35.0% |
! | TTGTTATTCAAGTGACCCTT+GGG | - | chr5.2:28339717-28339736 | MS.gene032780:CDS | 35.0% |
! | TTTCTGGACTCTTTTCTGAA+GGG | + | chr5.2:28339264-28339283 | None:intergenic | 35.0% |
! | TTTTCTGGACTCTTTTCTGA+AGG | + | chr5.2:28339265-28339284 | None:intergenic | 35.0% |
!! | CCTTTGAAGTAAGATTCGTA+AGG | + | chr5.2:28340159-28340178 | None:intergenic | 35.0% |
!! | CTATACAAACATCGCTTTTC+TGG | + | chr5.2:28339280-28339299 | None:intergenic | 35.0% |
!! | TGTCTAGCTTTCATAAAAGC+AGG | - | chr5.2:28339577-28339596 | MS.gene032780:CDS | 35.0% |
!! | TTTGTTATTCAAGTGACCCT+TGG | - | chr5.2:28339716-28339735 | MS.gene032780:CDS | 35.0% |
ACGAAGAAGATGTCATCACT+TGG | - | chr5.2:28339392-28339411 | MS.gene032780:CDS | 40.0% | |
ATCAACACGACCACCAATTT+AGG | - | chr5.2:28339212-28339231 | MS.gene032780:CDS | 40.0% | |
CGAAGAAGATGTCATCACTT+GGG | - | chr5.2:28339393-28339412 | MS.gene032780:CDS | 40.0% | |
GCTGCAACCACATAATCATT+TGG | + | chr5.2:28339538-28339557 | None:intergenic | 40.0% | |
TCAATGGGTGGCAAACTAAT+AGG | + | chr5.2:28339442-28339461 | None:intergenic | 40.0% | |
TGTTATTCAAGTGACCCTTG+GGG | - | chr5.2:28339718-28339737 | MS.gene032780:CDS | 40.0% | |
TTATGAAAGCTAGACAGCCA+CGG | + | chr5.2:28339573-28339592 | None:intergenic | 40.0% | |
! | CACTTGGGTGAATCCTTTTA+AGG | - | chr5.2:28339408-28339427 | MS.gene032780:CDS | 40.0% |
! | CCTAGAGGTCCTTTTGATAT+GGG | - | chr5.2:28340093-28340112 | MS.gene032780:CDS | 40.0% |
! | TCCTAGAGGTCCTTTTGATA+TGG | - | chr5.2:28340092-28340111 | MS.gene032780:CDS | 40.0% |
!! | TCAAAAGGACCTCTAGGATA+AGG | + | chr5.2:28340090-28340109 | None:intergenic | 40.0% |
!! | TTGGTTCTGTCTGCAAAAGT+TGG | - | chr5.2:28339167-28339186 | MS.gene032780:CDS | 40.0% |
AAAAGGTGGCACAACCCATA+TGG | + | chr5.2:28340193-28340212 | None:intergenic | 45.0% | |
AAAGGTGGCACAACCCATAT+GGG | + | chr5.2:28340192-28340211 | None:intergenic | 45.0% | |
AAGGTATGACACCTCCCATA+TGG | - | chr5.2:28340175-28340194 | MS.gene032780:CDS | 45.0% | |
AATCATTGGAGGGAGAGTTG+TGG | - | chr5.2:28339815-28339834 | MS.gene032780:CDS | 45.0% | |
AGATGTTGTGGCTCAAGTCA+TGG | - | chr5.2:28339352-28339371 | MS.gene032780:CDS | 45.0% | |
AGGTATGACACCTCCCATAT+GGG | - | chr5.2:28340176-28340195 | MS.gene032780:CDS | 45.0% | |
CCCATATCAAAAGGACCTCT+AGG | + | chr5.2:28340096-28340115 | None:intergenic | 45.0% | |
GAATTCTTTCCTCACCCCAA+GGG | + | chr5.2:28339735-28339754 | None:intergenic | 45.0% | |
! | GAACCGATTCCTTATCCTAG+AGG | - | chr5.2:28340078-28340097 | MS.gene032780:CDS | 45.0% |
!! | GGACCTCTAGGATAAGGAAT+CGG | + | chr5.2:28340084-28340103 | None:intergenic | 45.0% |
!! | GGTGGTCGTGTTGATGATTA+AGG | + | chr5.2:28339207-28339226 | None:intergenic | 45.0% |
ATTGGAGGGAGAGTTGTGGA+TGG | - | chr5.2:28339819-28339838 | MS.gene032780:CDS | 50.0% | |
GAGAGTTGTGGATGGTGAGA+AGG | - | chr5.2:28339827-28339846 | MS.gene032780:CDS | 50.0% | |
GCAGCAATTTACACTGACCG+TGG | - | chr5.2:28339553-28339572 | MS.gene032780:CDS | 50.0% | |
GGAATTCTTTCCTCACCCCA+AGG | + | chr5.2:28339736-28339755 | None:intergenic | 50.0% | |
TGGTGTATGCCGTAACTCGT+TGG | - | chr5.2:28339671-28339690 | MS.gene032780:CDS | 50.0% | |
! | GGGTTGTGCCACCTTTTAAG+TGG | - | chr5.2:28340196-28340215 | MS.gene032780:CDS | 50.0% |
GTTGTGGCTCAAGTCATGGC+TGG | - | chr5.2:28339356-28339375 | MS.gene032780:CDS | 55.0% | |
TTCAAGTGACCCTTGGGGTG+AGG | - | chr5.2:28339723-28339742 | MS.gene032780:CDS | 55.0% | |
GGTGGCACAACCCATATGGG+AGG | + | chr5.2:28340189-28340208 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 28339082 | 28340224 | 28339082 | ID=MS.gene032780 |
chr5.2 | mRNA | 28339082 | 28340224 | 28339082 | ID=MS.gene032780.t1;Parent=MS.gene032780 |
chr5.2 | exon | 28339082 | 28340224 | 28339082 | ID=MS.gene032780.t1.exon1;Parent=MS.gene032780.t1 |
chr5.2 | CDS | 28339082 | 28340224 | 28339082 | ID=cds.MS.gene032780.t1;Parent=MS.gene032780.t1 |
Gene Sequence |
Protein sequence |