Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99023.t1 | XP_003613576.1 | 89.8 | 381 | 38 | 1 | 1 | 380 | 3 | 383 | 1.30E-209 | 738.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99023.t1 | G7K9R3 | 89.8 | 381 | 38 | 1 | 1 | 380 | 3 | 383 | 9.1e-210 | 738.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99023.t1 | MTR_5g038260 | 89.764 | 381 | 38 | 1 | 1 | 380 | 3 | 383 | 0.0 | 718 |
MS.gene99023.t1 | MTR_5g038230 | 82.105 | 380 | 43 | 2 | 1 | 380 | 1 | 355 | 0.0 | 639 |
MS.gene99023.t1 | MTR_1g064570 | 49.380 | 403 | 178 | 8 | 1 | 380 | 1 | 400 | 3.21e-128 | 374 |
MS.gene99023.t1 | MTR_1g108740 | 44.125 | 383 | 167 | 11 | 2 | 378 | 3 | 344 | 2.10e-95 | 288 |
MS.gene99023.t1 | MTR_5g082770 | 50.980 | 306 | 130 | 10 | 1 | 303 | 1 | 289 | 5.74e-87 | 265 |
MS.gene99023.t1 | MTR_7g077620 | 41.985 | 393 | 181 | 16 | 4 | 377 | 5 | 369 | 1.67e-77 | 244 |
MS.gene99023.t1 | MTR_7g077660 | 41.310 | 397 | 180 | 16 | 4 | 380 | 5 | 368 | 6.97e-76 | 239 |
MS.gene99023.t1 | MTR_7g077650 | 39.753 | 405 | 179 | 17 | 4 | 380 | 5 | 372 | 4.79e-72 | 229 |
MS.gene99023.t1 | MTR_5g082780 | 44.444 | 252 | 119 | 7 | 103 | 351 | 1 | 234 | 2.23e-55 | 182 |
MS.gene99023.t1 | MTR_7g076110 | 37.342 | 316 | 163 | 13 | 77 | 380 | 21 | 313 | 7.37e-46 | 160 |
MS.gene99023.t1 | MTR_1g016150 | 43.915 | 189 | 81 | 7 | 2 | 177 | 3 | 179 | 9.97e-42 | 147 |
MS.gene99023.t1 | MTR_1g016150 | 55.882 | 68 | 23 | 1 | 248 | 315 | 175 | 235 | 1.11e-14 | 73.2 |
MS.gene99023.t1 | MTR_7g076100 | 40.239 | 251 | 122 | 10 | 139 | 380 | 69 | 300 | 4.60e-38 | 139 |
MS.gene99023.t1 | MTR_6g023955 | 50.893 | 112 | 47 | 3 | 113 | 217 | 41 | 151 | 1.73e-25 | 102 |
MS.gene99023.t1 | MTR_6g023955 | 54.098 | 61 | 28 | 0 | 319 | 379 | 149 | 209 | 8.63e-17 | 79.0 |
MS.gene99023.t1 | MTR_1g108750 | 44.375 | 160 | 50 | 6 | 1 | 157 | 1 | 124 | 1.71e-24 | 97.4 |
MS.gene99023.t1 | MTR_3g114990 | 26.923 | 416 | 235 | 17 | 1 | 375 | 20 | 407 | 2.75e-22 | 97.8 |
MS.gene99023.t1 | MTR_3g114970 | 25.954 | 393 | 234 | 17 | 1 | 376 | 1 | 353 | 2.08e-21 | 94.7 |
MS.gene99023.t1 | MTR_6g018360 | 25.243 | 412 | 238 | 16 | 4 | 377 | 5 | 384 | 1.34e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 77 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGAGAAGGTTTATAAAT+AGG | 0.247820 | 5.4:+27523126 | MS.gene99023:CDS |
TTAGTTCCGTCTGCAATAAT+TGG | 0.265369 | 5.4:+27522454 | MS.gene99023:CDS |
GTTGGTTGTGTTGATGATTA+AGG | 0.265872 | 5.4:-27522491 | None:intergenic |
TAATCATCTGGACTTGTTAT+AGG | 0.276577 | 5.4:-27522810 | None:intergenic |
ATACAAGACACTGACCATTT+TGG | 0.281472 | 5.4:+27522906 | MS.gene99023:CDS |
TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.4:+27522877 | MS.gene99023:CDS |
CTTCTTTGTAACAAAACATT+TGG | 0.292647 | 5.4:-27523041 | None:intergenic |
TTGAGCATTGTCAATTCTAA+TGG | 0.306803 | 5.4:-27522609 | None:intergenic |
TTGTTATTCAAGTGACCCTT+GGG | 0.317511 | 5.4:+27523004 | MS.gene99023:CDS |
ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.4:-27522708 | None:intergenic |
TTGTCGAAACTTGAGAGTTT+AGG | 0.326449 | 5.4:+27523230 | MS.gene99023:CDS |
GCCACCCATCGATAATTATA+TGG | 0.334313 | 5.4:+27522737 | MS.gene99023:CDS |
ATCAACACAACCAACAATTT+AGG | 0.335160 | 5.4:+27522499 | MS.gene99023:CDS |
TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.4:+27522430 | MS.gene99023:CDS |
CCCTTACAATCCTTACTTCA+AGG | 0.356808 | 5.4:+27523442 | MS.gene99023:CDS |
TTCTTTACATGTATTTAAGT+TGG | 0.365055 | 5.4:+27523175 | MS.gene99023:CDS |
TCGATGGGTGGCAAACTAAT+AGG | 0.371653 | 5.4:-27522726 | None:intergenic |
AATGGATACACTCTATTTGC+TGG | 0.375390 | 5.4:-27522591 | None:intergenic |
TAACGTAAAACATGGAAGAT+TGG | 0.384298 | 5.4:+27523409 | MS.gene99023:CDS |
GCATAGCCATGGAGAGAGAT+TGG | 0.384461 | 5.4:+27522361 | None:intergenic |
CCCTTGAAGTAAGGATTGTA+AGG | 0.395536 | 5.4:-27523443 | None:intergenic |
GGTGAGAAGGTTTATAAATA+GGG | 0.399787 | 5.4:+27523127 | MS.gene99023:CDS |
CTATATTGCTCCTAAATTGT+TGG | 0.399804 | 5.4:-27522509 | None:intergenic |
CTAAACCAAATGTGATCAAT+TGG | 0.412059 | 5.4:-27522435 | None:intergenic |
TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.4:+27523088 | MS.gene99023:CDS |
CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.4:+27522938 | MS.gene99023:CDS |
TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.4:-27522920 | None:intergenic |
AACGTAAAACATGGAAGATT+GGG | 0.422361 | 5.4:+27523410 | MS.gene99023:CDS |
AAAAGATGGCACAACCCATA+TGG | 0.429841 | 5.4:-27523477 | None:intergenic |
AGGGTATGACACCTCCCATA+TGG | 0.446486 | 5.4:+27523462 | MS.gene99023:CDS |
AATCAATTCCATTGAAAAGA+TGG | 0.450268 | 5.4:-27523491 | None:intergenic |
GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.4:+27523114 | MS.gene99023:CDS |
TTACGACTTCAATGTGCATA+AGG | 0.467976 | 5.4:+27522770 | MS.gene99023:CDS |
TCAAAAGGACCTCTAGGATA+AGG | 0.471573 | 5.4:-27523374 | None:intergenic |
TTTGTTATTCAAGTGACCCT+TGG | 0.473541 | 5.4:+27523003 | MS.gene99023:CDS |
GCTGCAACCACATAATCATC+TGG | 0.504303 | 5.4:-27522822 | None:intergenic |
TTATATATTCCCATATCAAA+AGG | 0.509410 | 5.4:-27523389 | None:intergenic |
CCTTACAATCCTTACTTCAA+GGG | 0.511645 | 5.4:+27523443 | MS.gene99023:CDS |
TTCAAGTGACCCTTGGGGTG+AGG | 0.511989 | 5.4:+27523010 | MS.gene99023:CDS |
GGTGTCATACCCTTGAAGTA+AGG | 0.514378 | 5.4:-27523452 | None:intergenic |
CATAGCCATGGAGAGAGATT+GGG | 0.528373 | 5.4:+27522362 | None:intergenic |
GGGTATGACACCTCCCATAT+GGG | 0.531392 | 5.4:+27523463 | MS.gene99023:CDS |
GTTGTGGCTCAAGTCATGGC+TGG | 0.535182 | 5.4:+27522643 | MS.gene99023:CDS |
GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.4:-27523083 | None:intergenic |
AAAGATGGCACAACCCATAT+GGG | 0.541489 | 5.4:-27523476 | None:intergenic |
TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.4:+27522864 | MS.gene99023:CDS |
ACGTACCATATAATTATCGA+TGG | 0.547777 | 5.4:-27522742 | None:intergenic |
TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.4:+27523092 | MS.gene99023:CDS |
AAGTTGGAATTGAATGACAA+AGG | 0.553747 | 5.4:+27523191 | MS.gene99023:CDS |
CTCAACAACAAGAGATGTTG+TGG | 0.557207 | 5.4:+27522627 | MS.gene99023:CDS |
TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5.4:-27522856 | None:intergenic |
CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.4:-27523380 | None:intergenic |
TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.4:+27523091 | MS.gene99023:CDS |
AACAAGTCCAGATGATTATG+TGG | 0.565322 | 5.4:+27522815 | MS.gene99023:CDS |
GGAATTCTTTCCTCACCCCA+AGG | 0.565481 | 5.4:-27523020 | None:intergenic |
TCTGAAGGGATCATTAGCAT+AGG | 0.576479 | 5.4:-27522534 | None:intergenic |
GGACCTCTAGGATAAGGAAC+CGG | 0.579650 | 5.4:-27523368 | None:intergenic |
TAATTATTATAACGAAGTAC+CGG | 0.581850 | 5.4:+27523349 | MS.gene99023:CDS |
ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.4:+27522933 | MS.gene99023:CDS |
GAATTCTTTCCTCACCCCAA+GGG | 0.583805 | 5.4:-27523019 | None:intergenic |
TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5.4:-27522857 | None:intergenic |
GTTTGCCCAATCTCTCTCCA+TGG | 0.606008 | 5.4:-27522367 | None:intergenic |
AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.4:+27523102 | MS.gene99023:CDS |
TGGTGTATGCCGTAACCCGT+TGG | 0.614313 | 5.4:+27522958 | MS.gene99023:CDS |
GGAATATATAACGTAAAACA+TGG | 0.617818 | 5.4:+27523401 | MS.gene99023:CDS |
CCTTGAAGTAAGGATTGTAA+GGG | 0.619365 | 5.4:-27523442 | None:intergenic |
ACCATATAATTATCGATGGG+TGG | 0.627867 | 5.4:-27522738 | None:intergenic |
AGATGTTGTGGCTCAAGTCA+TGG | 0.635745 | 5.4:+27522639 | MS.gene99023:CDS |
CGTACCATATAATTATCGAT+GGG | 0.639191 | 5.4:-27522741 | None:intergenic |
GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5.4:+27522840 | MS.gene99023:CDS |
TGAGTGCCAATTATTGCAGA+CGG | 0.648917 | 5.4:-27522460 | None:intergenic |
GTACCGGTTCCTTATCCTAG+AGG | 0.650762 | 5.4:+27523365 | MS.gene99023:CDS |
AGGGTCAACAATATCAACAA+AGG | 0.663310 | 5.4:+27523146 | MS.gene99023:CDS |
TGTTATTCAAGTGACCCTTG+GGG | 0.675329 | 5.4:+27523005 | MS.gene99023:CDS |
ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.4:+27523106 | MS.gene99023:CDS |
GATGGCACAACCCATATGGG+AGG | 0.690978 | 5.4:-27523473 | None:intergenic |
TGTTATAGGATCAACTGACA+AGG | 0.708968 | 5.4:-27522796 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTATTATAACGAAGTAC+CGG | + | chr5.4:27523349-27523368 | MS.gene99023:CDS | 20.0% |
!! | TACTTATTTAGTGAAATCAT+TGG | + | chr5.4:27523088-27523107 | MS.gene99023:CDS | 20.0% |
!! | TTATATATTCCCATATCAAA+AGG | - | chr5.4:27523392-27523411 | None:intergenic | 20.0% |
!! | TTCTTTACATGTATTTAAGT+TGG | + | chr5.4:27523175-27523194 | MS.gene99023:CDS | 20.0% |
! | CTTCTTTGTAACAAAACATT+TGG | - | chr5.4:27523044-27523063 | None:intergenic | 25.0% |
! | GATTTCACTAAATAAGTAAG+TGG | - | chr5.4:27523086-27523105 | None:intergenic | 25.0% |
! | GGAATATATAACGTAAAACA+TGG | + | chr5.4:27523401-27523420 | MS.gene99023:CDS | 25.0% |
! | TATTTAGTGAAATCATTGGA+GGG | + | chr5.4:27523092-27523111 | MS.gene99023:CDS | 25.0% |
! | TTATTTAGTGAAATCATTGG+AGG | + | chr5.4:27523091-27523110 | MS.gene99023:CDS | 25.0% |
AACGTAAAACATGGAAGATT+GGG | + | chr5.4:27523410-27523429 | MS.gene99023:CDS | 30.0% | |
AAGTTGGAATTGAATGACAA+AGG | + | chr5.4:27523191-27523210 | MS.gene99023:CDS | 30.0% | |
ACGTACCATATAATTATCGA+TGG | - | chr5.4:27522745-27522764 | None:intergenic | 30.0% | |
ATCAACACAACCAACAATTT+AGG | + | chr5.4:27522499-27522518 | MS.gene99023:CDS | 30.0% | |
ATCGACATTACATTCTACAA+TGG | + | chr5.4:27522933-27522952 | MS.gene99023:CDS | 30.0% | |
CATTACATTCTACAATGGTT+TGG | + | chr5.4:27522938-27522957 | MS.gene99023:CDS | 30.0% | |
CGTACCATATAATTATCGAT+GGG | - | chr5.4:27522744-27522763 | None:intergenic | 30.0% | |
CTAAACCAAATGTGATCAAT+TGG | - | chr5.4:27522438-27522457 | None:intergenic | 30.0% | |
CTATATTGCTCCTAAATTGT+TGG | - | chr5.4:27522512-27522531 | None:intergenic | 30.0% | |
GGTGAGAAGGTTTATAAATA+GGG | + | chr5.4:27523127-27523146 | MS.gene99023:CDS | 30.0% | |
TAACGTAAAACATGGAAGAT+TGG | + | chr5.4:27523409-27523428 | MS.gene99023:CDS | 30.0% | |
TAATGTCGATGAAACCAAAA+TGG | - | chr5.4:27522923-27522942 | None:intergenic | 30.0% | |
TGGTGAGAAGGTTTATAAAT+AGG | + | chr5.4:27523126-27523145 | MS.gene99023:CDS | 30.0% | |
TTGAACCAATTGATCACATT+TGG | + | chr5.4:27522430-27522449 | MS.gene99023:CDS | 30.0% | |
! | TTGAGCATTGTCAATTCTAA+TGG | - | chr5.4:27522612-27522631 | None:intergenic | 30.0% |
!! | TAATCATCTGGACTTGTTAT+AGG | - | chr5.4:27522813-27522832 | None:intergenic | 30.0% |
!!! | AATGTTTTATTTGTGGGTGA+TGG | + | chr5.4:27523257-27523276 | MS.gene99023:CDS | 30.0% |
!!! | AATTTTTTTCCAACGGGTTA+CGG | - | chr5.4:27522970-27522989 | None:intergenic | 30.0% |
!!! | AGCAGACAATTTTTTTCCAA+CGG | - | chr5.4:27522977-27522996 | None:intergenic | 30.0% |
!!! | AGGAGACAATGTTTTATTTG+TGG | + | chr5.4:27523250-27523269 | MS.gene99023:CDS | 30.0% |
!!! | GGAGACAATGTTTTATTTGT+GGG | + | chr5.4:27523251-27523270 | MS.gene99023:CDS | 30.0% |
AACAAGTCCAGATGATTATG+TGG | + | chr5.4:27522815-27522834 | MS.gene99023:CDS | 35.0% | |
AATGGATACACTCTATTTGC+TGG | - | chr5.4:27522594-27522613 | None:intergenic | 35.0% | |
ACCATATAATTATCGATGGG+TGG | - | chr5.4:27522741-27522760 | None:intergenic | 35.0% | |
ACGAAAAAGATGTCATCACT+TGG | + | chr5.4:27522679-27522698 | MS.gene99023:CDS | 35.0% | |
AGGGTCAACAATATCAACAA+AGG | + | chr5.4:27523146-27523165 | MS.gene99023:CDS | 35.0% | |
ATAGGAGCAACATCCTTAAA+AGG | - | chr5.4:27522711-27522730 | None:intergenic | 35.0% | |
CCTTACAATCCTTACTTCAA+GGG | + | chr5.4:27523443-27523462 | MS.gene99023:CDS | 35.0% | |
CCTTGAAGTAAGGATTGTAA+GGG | - | chr5.4:27523445-27523464 | None:intergenic | 35.0% | |
CGAAAAAGATGTCATCACTT+GGG | + | chr5.4:27522680-27522699 | MS.gene99023:CDS | 35.0% | |
TGTTATAGGATCAACTGACA+AGG | - | chr5.4:27522799-27522818 | None:intergenic | 35.0% | |
TTACGACTTCAATGTGCATA+AGG | + | chr5.4:27522770-27522789 | MS.gene99023:CDS | 35.0% | |
TTAGTTCCGTCTGCAATAAT+TGG | + | chr5.4:27522454-27522473 | MS.gene99023:CDS | 35.0% | |
TTGTCGAAACTTGAGAGTTT+AGG | + | chr5.4:27523230-27523249 | MS.gene99023:CDS | 35.0% | |
! | ATACAAGACACTGACCATTT+TGG | + | chr5.4:27522906-27522925 | MS.gene99023:CDS | 35.0% |
! | CTATACAAACAACGCTTTTC+TGG | - | chr5.4:27522567-27522586 | None:intergenic | 35.0% |
! | TAAAAGCAGGACAAGAGTTT+TGG | + | chr5.4:27522877-27522896 | MS.gene99023:CDS | 35.0% |
! | TTGTTATTCAAGTGACCCTT+GGG | + | chr5.4:27523004-27523023 | MS.gene99023:CDS | 35.0% |
! | TTTCTGGACTGTTTTCTGAA+GGG | - | chr5.4:27522551-27522570 | None:intergenic | 35.0% |
! | TTTTCTGGACTGTTTTCTGA+AGG | - | chr5.4:27522552-27522571 | None:intergenic | 35.0% |
!! | GATGACATCTTTTTCGTCTA+AGG | - | chr5.4:27522676-27522695 | None:intergenic | 35.0% |
!! | GTTGGTTGTGTTGATGATTA+AGG | - | chr5.4:27522494-27522513 | None:intergenic | 35.0% |
!! | TGTCTAGCTTTCATAAAAGC+AGG | + | chr5.4:27522864-27522883 | MS.gene99023:CDS | 35.0% |
!! | TTTGTTATTCAAGTGACCCT+TGG | + | chr5.4:27523003-27523022 | MS.gene99023:CDS | 35.0% |
!!! | GCAGACAATTTTTTTCCAAC+GGG | - | chr5.4:27522976-27522995 | None:intergenic | 35.0% |
AAAAGATGGCACAACCCATA+TGG | - | chr5.4:27523480-27523499 | None:intergenic | 40.0% | |
AAAGATGGCACAACCCATAT+GGG | - | chr5.4:27523479-27523498 | None:intergenic | 40.0% | |
CCCTTACAATCCTTACTTCA+AGG | + | chr5.4:27523442-27523461 | MS.gene99023:CDS | 40.0% | |
CCCTTGAAGTAAGGATTGTA+AGG | - | chr5.4:27523446-27523465 | None:intergenic | 40.0% | |
CTCAACAACAAGAGATGTTG+TGG | + | chr5.4:27522627-27522646 | MS.gene99023:CDS | 40.0% | |
GCCACCCATCGATAATTATA+TGG | + | chr5.4:27522737-27522756 | MS.gene99023:CDS | 40.0% | |
TCTGAAGGGATCATTAGCAT+AGG | - | chr5.4:27522537-27522556 | None:intergenic | 40.0% | |
TGAGTGCCAATTATTGCAGA+CGG | - | chr5.4:27522463-27522482 | None:intergenic | 40.0% | |
TGTTATTCAAGTGACCCTTG+GGG | + | chr5.4:27523005-27523024 | MS.gene99023:CDS | 40.0% | |
TTATGAAAGCTAGACAGCCA+CGG | - | chr5.4:27522860-27522879 | None:intergenic | 40.0% | |
! | CACTTGGGTGAATCCTTTTA+AGG | + | chr5.4:27522695-27522714 | MS.gene99023:CDS | 40.0% |
! | CCTAGAGGTCCTTTTGATAT+GGG | + | chr5.4:27523380-27523399 | MS.gene99023:CDS | 40.0% |
! | TCCTAGAGGTCCTTTTGATA+TGG | + | chr5.4:27523379-27523398 | MS.gene99023:CDS | 40.0% |
!! | TCAAAAGGACCTCTAGGATA+AGG | - | chr5.4:27523377-27523396 | None:intergenic | 40.0% |
AATCATTGGAGGGAGAGTTG+TGG | + | chr5.4:27523102-27523121 | MS.gene99023:CDS | 45.0% | |
AGATGTTGTGGCTCAAGTCA+TGG | + | chr5.4:27522639-27522658 | MS.gene99023:CDS | 45.0% | |
CCCATATCAAAAGGACCTCT+AGG | - | chr5.4:27523383-27523402 | None:intergenic | 45.0% | |
GAATTCTTTCCTCACCCCAA+GGG | - | chr5.4:27523022-27523041 | None:intergenic | 45.0% | |
GCTGCAACCACATAATCATC+TGG | - | chr5.4:27522825-27522844 | None:intergenic | 45.0% | |
TATGAAAGCTAGACAGCCAC+GGG | - | chr5.4:27522859-27522878 | None:intergenic | 45.0% | |
TCGATGGGTGGCAAACTAAT+AGG | - | chr5.4:27522729-27522748 | None:intergenic | 45.0% | |
! | GGGTTGTGCCATCTTTTCAA+TGG | + | chr5.4:27523483-27523502 | MS.gene99023:CDS | 45.0% |
! | GGTGTCATACCCTTGAAGTA+AGG | - | chr5.4:27523455-27523474 | None:intergenic | 45.0% |
AGGGTATGACACCTCCCATA+TGG | + | chr5.4:27523462-27523481 | MS.gene99023:CDS | 50.0% | |
ATTGGAGGGAGAGTTGTGGA+TGG | + | chr5.4:27523106-27523125 | MS.gene99023:CDS | 50.0% | |
GAGAGTTGTGGATGGTGAGA+AGG | + | chr5.4:27523114-27523133 | MS.gene99023:CDS | 50.0% | |
GCAGCAATTTACACTACCCG+TGG | + | chr5.4:27522840-27522859 | MS.gene99023:CDS | 50.0% | |
GGAATTCTTTCCTCACCCCA+AGG | - | chr5.4:27523023-27523042 | None:intergenic | 50.0% | |
GGGTATGACACCTCCCATAT+GGG | + | chr5.4:27523463-27523482 | MS.gene99023:CDS | 50.0% | |
!! | GGACCTCTAGGATAAGGAAC+CGG | - | chr5.4:27523371-27523390 | None:intergenic | 50.0% |
!! | GTACCGGTTCCTTATCCTAG+AGG | + | chr5.4:27523365-27523384 | MS.gene99023:CDS | 50.0% |
GATGGCACAACCCATATGGG+AGG | - | chr5.4:27523476-27523495 | None:intergenic | 55.0% | |
GTTGTGGCTCAAGTCATGGC+TGG | + | chr5.4:27522643-27522662 | MS.gene99023:CDS | 55.0% | |
TGGTGTATGCCGTAACCCGT+TGG | + | chr5.4:27522958-27522977 | MS.gene99023:CDS | 55.0% | |
TTCAAGTGACCCTTGGGGTG+AGG | + | chr5.4:27523010-27523029 | MS.gene99023:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 27522369 | 27523511 | 27522369 | ID=MS.gene99023 |
chr5.4 | mRNA | 27522369 | 27523511 | 27522369 | ID=MS.gene99023.t1;Parent=MS.gene99023 |
chr5.4 | exon | 27522369 | 27523511 | 27522369 | ID=MS.gene99023.t1.exon1;Parent=MS.gene99023.t1 |
chr5.4 | CDS | 27522369 | 27523511 | 27522369 | ID=cds.MS.gene99023.t1;Parent=MS.gene99023.t1 |
Gene Sequence |
Protein sequence |