Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22627.t1 | XP_013468204.1 | 62 | 371 | 100 | 9 | 1 | 356 | 56 | 400 | 1.00E-120 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22627.t1 | A0A072VKT8 | 62.0 | 371 | 100 | 9 | 1 | 356 | 56 | 400 | 7.4e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22627.t1 | MTR_1g064570 | 63.342 | 371 | 95 | 10 | 1 | 356 | 56 | 400 | 3.66e-157 | 447 |
| MS.gene22627.t1 | MTR_5g038260 | 48.767 | 365 | 138 | 10 | 1 | 356 | 59 | 383 | 4.50e-105 | 313 |
| MS.gene22627.t1 | MTR_5g038230 | 45.682 | 359 | 132 | 11 | 1 | 356 | 57 | 355 | 2.12e-89 | 273 |
| MS.gene22627.t1 | MTR_1g108740 | 37.330 | 367 | 138 | 14 | 1 | 354 | 57 | 344 | 5.91e-53 | 178 |
| MS.gene22627.t1 | MTR_5g082780 | 39.259 | 270 | 115 | 6 | 58 | 324 | 7 | 230 | 5.86e-49 | 164 |
| MS.gene22627.t1 | MTR_5g082770 | 40.210 | 286 | 115 | 10 | 1 | 281 | 56 | 290 | 2.35e-45 | 157 |
| MS.gene22627.t1 | MTR_7g077620 | 34.840 | 376 | 161 | 15 | 1 | 354 | 57 | 370 | 2.99e-45 | 159 |
| MS.gene22627.t1 | MTR_7g077650 | 34.021 | 388 | 153 | 16 | 1 | 356 | 56 | 372 | 1.48e-42 | 152 |
| MS.gene22627.t1 | MTR_7g077660 | 36.578 | 339 | 129 | 15 | 34 | 355 | 98 | 367 | 2.94e-40 | 145 |
| MS.gene22627.t1 | MTR_7g076110 | 34.743 | 331 | 148 | 11 | 39 | 356 | 38 | 313 | 5.30e-39 | 141 |
| MS.gene22627.t1 | MTR_7g076100 | 38.989 | 277 | 114 | 9 | 90 | 356 | 69 | 300 | 6.49e-38 | 138 |
| MS.gene22627.t1 | MTR_6g023955 | 70.652 | 92 | 25 | 1 | 79 | 170 | 63 | 152 | 3.17e-36 | 130 |
| MS.gene22627.t1 | MTR_6g023955 | 73.770 | 61 | 15 | 1 | 296 | 355 | 149 | 209 | 8.76e-26 | 103 |
| MS.gene22627.t1 | MTR_1g016150 | 33.758 | 157 | 73 | 6 | 1 | 145 | 57 | 194 | 1.13e-12 | 67.4 |
| MS.gene22627.t1 | MTR_7g069800 | 25.613 | 367 | 217 | 16 | 8 | 348 | 50 | 386 | 4.66e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTAATGGACCGTTTGATA+TGG | 0.203192 | 3.4:+49418130 | MS.gene22627:CDS |
| ATGCACTTTACATTCATAAT+TGG | 0.230509 | 3.4:-49417439 | None:intergenic |
| AATGTTAAAACTTGATAGTT+TGG | 0.233392 | 3.4:+49417980 | MS.gene22627:CDS |
| TAAAATCTGGACAAAACTTT+TGG | 0.235612 | 3.4:+49417556 | MS.gene22627:CDS |
| TTGCAACTTATAAATTGTTT+TGG | 0.271302 | 3.4:-49417250 | None:intergenic |
| CTTTGTTCTACACTTTCTTT+TGG | 0.271432 | 3.4:-49417205 | None:intergenic |
| TCTACATGTCGGATATAATT+AGG | 0.288650 | 3.4:+49417409 | MS.gene22627:CDS |
| CACGGATGCCACCTGCACTA+TGG | 0.298094 | 3.4:+49418210 | MS.gene22627:CDS |
| CCACAAAACCTCTTGTTATA+AGG | 0.323478 | 3.4:-49417282 | None:intergenic |
| TATAATTGTATTTGTAACTT+TGG | 0.337833 | 3.4:-49417340 | None:intergenic |
| CCCATATCAAACGGTCCATT+AGG | 0.357341 | 3.4:-49418131 | None:intergenic |
| AGAACAAAGAGAAGGTTATA+TGG | 0.364426 | 3.4:+49417219 | MS.gene22627:CDS |
| ACCGATGTTATATTCTATAA+AGG | 0.369663 | 3.4:+49417609 | MS.gene22627:CDS |
| ATGTTAAAACTTGATAGTTT+GGG | 0.387582 | 3.4:+49417981 | MS.gene22627:CDS |
| CCTAATGGACCGTTTGATAT+GGG | 0.398021 | 3.4:+49418131 | MS.gene22627:CDS |
| GTCAACATTGCCGTTATCAT+TGG | 0.401687 | 3.4:+49418183 | MS.gene22627:CDS |
| GGCTTATCTTGTGAAATCAT+TGG | 0.406267 | 3.4:+49417749 | MS.gene22627:CDS |
| CCATATCAAACGGTCCATTA+GGG | 0.406401 | 3.4:-49418130 | None:intergenic |
| CATTCCTAATGTTGTTTCTC+CGG | 0.418552 | 3.4:+49417704 | MS.gene22627:CDS |
| TCTGCTAAATCCTTTCAAAC+AGG | 0.421433 | 3.4:+49417365 | MS.gene22627:CDS |
| TAATCATGTGGCCTAGTTGT+AGG | 0.431478 | 3.4:-49417483 | None:intergenic |
| TAGTCTATGCTGTGGGTTGG+TGG | 0.434022 | 3.4:+49417634 | MS.gene22627:CDS |
| ATTATATCCGACATGTAGAT+AGG | 0.442904 | 3.4:-49417405 | None:intergenic |
| CTTTGCTAGCCAACCATGAC+TGG | 0.448989 | 3.4:-49417307 | None:intergenic |
| TGTCTCGCTTTCATAAAATC+TGG | 0.450132 | 3.4:+49417543 | MS.gene22627:CDS |
| AGTTGTCAATTCCACTGAAA+AGG | 0.452440 | 3.4:-49418242 | None:intergenic |
| ACGGATGCCACCTGCACTAT+GGG | 0.475104 | 3.4:+49418211 | MS.gene22627:CDS |
| GCACCGATTCCTTACCCTAA+TGG | 0.477190 | 3.4:+49418116 | MS.gene22627:CDS |
| GGAATTTATAATGTAAAAGA+TGG | 0.477521 | 3.4:+49418152 | MS.gene22627:CDS |
| TTATGAATGTAAAGTGCATA+AGG | 0.479221 | 3.4:+49417443 | MS.gene22627:CDS |
| GAACAAAGAGAAGGTTATAT+GGG | 0.483307 | 3.4:+49417220 | MS.gene22627:CDS |
| TAATGTTGTTTCTCCGGAGG+GGG | 0.487050 | 3.4:+49417710 | MS.gene22627:CDS |
| ACATGTAGATAGGTGGTAAA+GGG | 0.494359 | 3.4:-49417395 | None:intergenic |
| CATATTTGAAGTCTACAAGT+TGG | 0.496858 | 3.4:+49417926 | MS.gene22627:CDS |
| CCCTCCGGAGAAACAACATT+AGG | 0.500061 | 3.4:-49417708 | None:intergenic |
| GACATGTAGATAGGTGGTAA+AGG | 0.520441 | 3.4:-49417396 | None:intergenic |
| GGGATGGAAACCTGTTTGAA+AGG | 0.525110 | 3.4:-49417375 | None:intergenic |
| CCTAATGTTGTTTCTCCGGA+GGG | 0.527562 | 3.4:+49417708 | MS.gene22627:CDS |
| TTTGTGGCTCCAGTCATGGT+TGG | 0.527925 | 3.4:+49417298 | MS.gene22627:CDS |
| GCCTAGTCTATGCTGTGGGT+TGG | 0.537826 | 3.4:+49417631 | MS.gene22627:CDS |
| AATATGCTAGTACCACTACT+AGG | 0.541825 | 3.4:-49417909 | None:intergenic |
| TTATAAATTCCCATATCAAA+CGG | 0.543398 | 3.4:-49418140 | None:intergenic |
| TTATCTTGTGAAATCATTGG+AGG | 0.548164 | 3.4:+49417752 | MS.gene22627:CDS |
| TCCTAATGTTGTTTCTCCGG+AGG | 0.554077 | 3.4:+49417707 | MS.gene22627:CDS |
| TCAAACGGTCCATTAGGGTA+AGG | 0.554276 | 3.4:-49418125 | None:intergenic |
| GCCGTTATCATTGGTTCACA+CGG | 0.555710 | 3.4:+49418192 | MS.gene22627:CDS |
| TTTGGTGGGAATCATTAGCA+TGG | 0.559241 | 3.4:-49417187 | None:intergenic |
| TGTCAATTCCACTGAAAAGG+TGG | 0.562132 | 3.4:-49418239 | None:intergenic |
| GAAAGTGTAGAACAAAGAGA+AGG | 0.562266 | 3.4:+49417211 | MS.gene22627:CDS |
| CTAATGTTGTTTCTCCGGAG+GGG | 0.563359 | 3.4:+49417709 | MS.gene22627:CDS |
| TCCGTGTGAACCAATGATAA+CGG | 0.570632 | 3.4:-49418193 | None:intergenic |
| CAGTCATGGTTGGCTAGCAA+AGG | 0.570941 | 3.4:+49417308 | MS.gene22627:CDS |
| GGTGGAAGAACCCATAGTGC+AGG | 0.571130 | 3.4:-49418221 | None:intergenic |
| GTAGATAGGTGGTAAAGGGA+TGG | 0.572882 | 3.4:-49417391 | None:intergenic |
| TATCGGCTAATCCTACAACT+AGG | 0.572975 | 3.4:+49417472 | MS.gene22627:CDS |
| CAATGAGTCTGTATCTATGT+CGG | 0.575020 | 3.4:+49418028 | MS.gene22627:CDS |
| TTTCTCGATGATGATGATGA+TGG | 0.576625 | 3.4:+49417807 | MS.gene22627:CDS |
| TTGATGTGCCTTATAACAAG+AGG | 0.579292 | 3.4:+49417274 | MS.gene22627:CDS |
| GGTCCATTAGGGTAAGGAAT+CGG | 0.579935 | 3.4:-49418119 | None:intergenic |
| TTGGTGGGAATCATTAGCAT+GGG | 0.584462 | 3.4:-49417186 | None:intergenic |
| GATGATGATGGTGATGATGA+TGG | 0.588649 | 3.4:+49417819 | MS.gene22627:CDS |
| GTGTTACTCGAAGGATGAGA+AGG | 0.591492 | 3.4:+49417680 | MS.gene22627:CDS |
| TATCTTGTGAAATCATTGGA+GGG | 0.603454 | 3.4:+49417753 | MS.gene22627:CDS |
| TGGCTTGTAAGAAAATATGT+TGG | 0.606901 | 3.4:+49417783 | MS.gene22627:CDS |
| TTGGAATTAGATCTTCAAAG+TGG | 0.618947 | 3.4:+49417945 | MS.gene22627:CDS |
| TCATGGTTGGCTAGCAAAGG+CGG | 0.620668 | 3.4:+49417311 | MS.gene22627:CDS |
| GGAAGAACCCATAGTGCAGG+TGG | 0.627590 | 3.4:-49418218 | None:intergenic |
| AAAGGCCTAGTCTATGCTGT+GGG | 0.634832 | 3.4:+49417627 | MS.gene22627:CDS |
| AATCATTGGAGGGAGACTTG+TGG | 0.640759 | 3.4:+49417763 | MS.gene22627:CDS |
| GGTGTTAACTTGCCTAGTAG+TGG | 0.642513 | 3.4:+49417897 | MS.gene22627:CDS |
| TAAAGGCCTAGTCTATGCTG+TGG | 0.643845 | 3.4:+49417626 | MS.gene22627:CDS |
| TTTACCACCTATCTACATGT+CGG | 0.651760 | 3.4:+49417398 | MS.gene22627:CDS |
| ACCAACCCACAGCATAGACT+AGG | 0.655708 | 3.4:-49417632 | None:intergenic |
| ATATCCGACATGTAGATAGG+TGG | 0.675448 | 3.4:-49417402 | None:intergenic |
| GCCTTTATAGAATATAACAT+CGG | 0.679693 | 3.4:-49417610 | None:intergenic |
| GCTACAGCAACATAATCATG+TGG | 0.697559 | 3.4:-49417495 | None:intergenic |
| GATGATGGTGATGATGATGG+TGG | 0.714594 | 3.4:+49417822 | MS.gene22627:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTGTATTTGTAACTT+TGG | - | chr3.4:49417343-49417362 | None:intergenic | 15.0% |
| !! | GGAATTTATAATGTAAAAGA+TGG | + | chr3.4:49418152-49418171 | MS.gene22627:CDS | 20.0% |
| !! | TTATAAATTCCCATATCAAA+CGG | - | chr3.4:49418143-49418162 | None:intergenic | 20.0% |
| !!! | AATGTTAAAACTTGATAGTT+TGG | + | chr3.4:49417980-49417999 | MS.gene22627:CDS | 20.0% |
| !!! | ATGTTAAAACTTGATAGTTT+GGG | + | chr3.4:49417981-49418000 | MS.gene22627:CDS | 20.0% |
| !!! | TTGCAACTTATAAATTGTTT+TGG | - | chr3.4:49417253-49417272 | None:intergenic | 20.0% |
| ! | ACCGATGTTATATTCTATAA+AGG | + | chr3.4:49417609-49417628 | MS.gene22627:CDS | 25.0% |
| ! | ATGCACTTTACATTCATAAT+TGG | - | chr3.4:49417442-49417461 | None:intergenic | 25.0% |
| ! | GCCTTTATAGAATATAACAT+CGG | - | chr3.4:49417613-49417632 | None:intergenic | 25.0% |
| ! | TTATGAATGTAAAGTGCATA+AGG | + | chr3.4:49417443-49417462 | MS.gene22627:CDS | 25.0% |
| !! | TAAAATCTGGACAAAACTTT+TGG | + | chr3.4:49417556-49417575 | MS.gene22627:CDS | 25.0% |
| !!! | AGTGCATAAGGTTATTTTAT+CGG | + | chr3.4:49417455-49417474 | MS.gene22627:CDS | 25.0% |
| !!! | TTTTAATTTGTGTTACTCGA+AGG | + | chr3.4:49417671-49417690 | MS.gene22627:CDS | 25.0% |
| AGAACAAAGAGAAGGTTATA+TGG | + | chr3.4:49417219-49417238 | MS.gene22627:CDS | 30.0% | |
| ATTATATCCGACATGTAGAT+AGG | - | chr3.4:49417408-49417427 | None:intergenic | 30.0% | |
| GAACAAAGAGAAGGTTATAT+GGG | + | chr3.4:49417220-49417239 | MS.gene22627:CDS | 30.0% | |
| TATCTTGTGAAATCATTGGA+GGG | + | chr3.4:49417753-49417772 | MS.gene22627:CDS | 30.0% | |
| TCTACATGTCGGATATAATT+AGG | + | chr3.4:49417409-49417428 | MS.gene22627:CDS | 30.0% | |
| TTATCTTGTGAAATCATTGG+AGG | + | chr3.4:49417752-49417771 | MS.gene22627:CDS | 30.0% | |
| TTGGAATTAGATCTTCAAAG+TGG | + | chr3.4:49417945-49417964 | MS.gene22627:CDS | 30.0% | |
| ! | CATATTTGAAGTCTACAAGT+TGG | + | chr3.4:49417926-49417945 | MS.gene22627:CDS | 30.0% |
| ! | CTTTGTTCTACACTTTCTTT+TGG | - | chr3.4:49417208-49417227 | None:intergenic | 30.0% |
| ! | TGGCTTGTAAGAAAATATGT+TGG | + | chr3.4:49417783-49417802 | MS.gene22627:CDS | 30.0% |
| AATATGCTAGTACCACTACT+AGG | - | chr3.4:49417912-49417931 | None:intergenic | 35.0% | |
| ACATGTAGATAGGTGGTAAA+GGG | - | chr3.4:49417398-49417417 | None:intergenic | 35.0% | |
| CAATGAGTCTGTATCTATGT+CGG | + | chr3.4:49418028-49418047 | MS.gene22627:CDS | 35.0% | |
| GGCTTATCTTGTGAAATCAT+TGG | + | chr3.4:49417749-49417768 | MS.gene22627:CDS | 35.0% | |
| TCTGCTAAATCCTTTCAAAC+AGG | + | chr3.4:49417365-49417384 | MS.gene22627:CDS | 35.0% | |
| TGTCTCGCTTTCATAAAATC+TGG | + | chr3.4:49417543-49417562 | MS.gene22627:CDS | 35.0% | |
| TTGATGTGCCTTATAACAAG+AGG | + | chr3.4:49417274-49417293 | MS.gene22627:CDS | 35.0% | |
| TTTACCACCTATCTACATGT+CGG | + | chr3.4:49417398-49417417 | MS.gene22627:CDS | 35.0% | |
| ! | AGATTTTATGAAAGCGAGAC+AGG | - | chr3.4:49417544-49417563 | None:intergenic | 35.0% |
| ! | CCACAAAACCTCTTGTTATA+AGG | - | chr3.4:49417285-49417304 | None:intergenic | 35.0% |
| ! | CCTTATAACAAGAGGTTTTG+TGG | + | chr3.4:49417282-49417301 | MS.gene22627:CDS | 35.0% |
| ! | GAAAGTGTAGAACAAAGAGA+AGG | + | chr3.4:49417211-49417230 | MS.gene22627:CDS | 35.0% |
| ! | GATGATGATGATGATGATGA+TGG | + | chr3.4:49417867-49417886 | MS.gene22627:CDS | 35.0% |
| ! | GTTCTACACTTTCTTTTGGT+GGG | - | chr3.4:49417204-49417223 | None:intergenic | 35.0% |
| ! | TGTTCTACACTTTCTTTTGG+TGG | - | chr3.4:49417205-49417224 | None:intergenic | 35.0% |
| ! | TTTCTCGATGATGATGATGA+TGG | + | chr3.4:49417807-49417826 | MS.gene22627:CDS | 35.0% |
| !! | CATTCCTAATGTTGTTTCTC+CGG | + | chr3.4:49417704-49417723 | MS.gene22627:CDS | 35.0% |
| !!! | GGAGACAACGTTTTATTTGT+GGG | + | chr3.4:49418002-49418021 | MS.gene22627:CDS | 35.0% |
| ATATCCGACATGTAGATAGG+TGG | - | chr3.4:49417405-49417424 | None:intergenic | 40.0% | |
| CCATATCAAACGGTCCATTA+GGG | - | chr3.4:49418133-49418152 | None:intergenic | 40.0% | |
| GACATGTAGATAGGTGGTAA+AGG | - | chr3.4:49417399-49417418 | None:intergenic | 40.0% | |
| GCTACAGCAACATAATCATG+TGG | - | chr3.4:49417498-49417517 | None:intergenic | 40.0% | |
| GTCAACATTGCCGTTATCAT+TGG | + | chr3.4:49418183-49418202 | MS.gene22627:CDS | 40.0% | |
| TAATCATGTGGCCTAGTTGT+AGG | - | chr3.4:49417486-49417505 | None:intergenic | 40.0% | |
| TCCGTGTGAACCAATGATAA+CGG | - | chr3.4:49418196-49418215 | None:intergenic | 40.0% | |
| ! | CCTAATGGACCGTTTGATAT+GGG | + | chr3.4:49418131-49418150 | MS.gene22627:CDS | 40.0% |
| ! | GGTGATGATGATGATGATGA+TGG | + | chr3.4:49417843-49417862 | MS.gene22627:CDS | 40.0% |
| ! | TATCGGCTAATCCTACAACT+AGG | + | chr3.4:49417472-49417491 | MS.gene22627:CDS | 40.0% |
| !! | GATGATGATGGTGATGATGA+TGG | + | chr3.4:49417819-49417838 | MS.gene22627:CDS | 40.0% |
| !!! | GGGAGACAACGTTTTATTTG+TGG | + | chr3.4:49418001-49418020 | MS.gene22627:CDS | 40.0% |
| AAAGGCCTAGTCTATGCTGT+GGG | + | chr3.4:49417627-49417646 | MS.gene22627:CDS | 45.0% | |
| AATCATTGGAGGGAGACTTG+TGG | + | chr3.4:49417763-49417782 | MS.gene22627:CDS | 45.0% | |
| AGGGGGATGATTATGCTCAT+CGG | + | chr3.4:49417727-49417746 | MS.gene22627:CDS | 45.0% | |
| CCCATATCAAACGGTCCATT+AGG | - | chr3.4:49418134-49418153 | None:intergenic | 45.0% | |
| GGGATGGAAACCTGTTTGAA+AGG | - | chr3.4:49417378-49417397 | None:intergenic | 45.0% | |
| GGTCCATTAGGGTAAGGAAT+CGG | - | chr3.4:49418122-49418141 | None:intergenic | 45.0% | |
| GTAGATAGGTGGTAAAGGGA+TGG | - | chr3.4:49417394-49417413 | None:intergenic | 45.0% | |
| TAAAGGCCTAGTCTATGCTG+TGG | + | chr3.4:49417626-49417645 | MS.gene22627:CDS | 45.0% | |
| TCAAACGGTCCATTAGGGTA+AGG | - | chr3.4:49418128-49418147 | None:intergenic | 45.0% | |
| ! | CCCTAATGGACCGTTTGATA+TGG | + | chr3.4:49418130-49418149 | MS.gene22627:CDS | 45.0% |
| ! | GTGTTACTCGAAGGATGAGA+AGG | + | chr3.4:49417680-49417699 | MS.gene22627:CDS | 45.0% |
| !! | CCTAATGTTGTTTCTCCGGA+GGG | + | chr3.4:49417708-49417727 | MS.gene22627:CDS | 45.0% |
| !! | CTAATGTTGTTTCTCCGGAG+GGG | + | chr3.4:49417709-49417728 | MS.gene22627:CDS | 45.0% |
| !! | GATGATGGTGATGATGATGG+TGG | + | chr3.4:49417822-49417841 | MS.gene22627:CDS | 45.0% |
| !! | GCCGTTATCATTGGTTCACA+CGG | + | chr3.4:49418192-49418211 | MS.gene22627:CDS | 45.0% |
| !! | GGTGTTAACTTGCCTAGTAG+TGG | + | chr3.4:49417897-49417916 | MS.gene22627:CDS | 45.0% |
| !! | TAATGTTGTTTCTCCGGAGG+GGG | + | chr3.4:49417710-49417729 | MS.gene22627:CDS | 45.0% |
| !! | TCCTAATGTTGTTTCTCCGG+AGG | + | chr3.4:49417707-49417726 | MS.gene22627:CDS | 45.0% |
| ACCAACCCACAGCATAGACT+AGG | - | chr3.4:49417635-49417654 | None:intergenic | 50.0% | |
| CCCTCCGGAGAAACAACATT+AGG | - | chr3.4:49417711-49417730 | None:intergenic | 50.0% | |
| CTTTGCTAGCCAACCATGAC+TGG | - | chr3.4:49417310-49417329 | None:intergenic | 50.0% | |
| GGGGGATGATTATGCTCATC+GGG | + | chr3.4:49417728-49417747 | MS.gene22627:CDS | 50.0% | |
| TGAGCATAATCATCCCCCTC+CGG | - | chr3.4:49417726-49417745 | None:intergenic | 50.0% | |
| TTTGTGGCTCCAGTCATGGT+TGG | + | chr3.4:49417298-49417317 | MS.gene22627:CDS | 50.0% | |
| ! | CAGTCATGGTTGGCTAGCAA+AGG | + | chr3.4:49417308-49417327 | MS.gene22627:CDS | 50.0% |
| ! | GGGTTCTTCCACCTTTTCAG+TGG | + | chr3.4:49418231-49418250 | MS.gene22627:CDS | 50.0% |
| ! | TCATGGTTGGCTAGCAAAGG+CGG | + | chr3.4:49417311-49417330 | MS.gene22627:CDS | 50.0% |
| !! | AGGTTTTGTGGCTCCAGTCA+TGG | + | chr3.4:49417294-49417313 | MS.gene22627:CDS | 50.0% |
| !! | GCACCGATTCCTTACCCTAA+TGG | + | chr3.4:49418116-49418135 | MS.gene22627:CDS | 50.0% |
| !! | TAGTCTATGCTGTGGGTTGG+TGG | + | chr3.4:49417634-49417653 | MS.gene22627:CDS | 50.0% |
| ACGGATGCCACCTGCACTAT+GGG | + | chr3.4:49418211-49418230 | MS.gene22627:CDS | 55.0% | |
| GCCTAGTCTATGCTGTGGGT+TGG | + | chr3.4:49417631-49417650 | MS.gene22627:CDS | 55.0% | |
| GGAAGAACCCATAGTGCAGG+TGG | - | chr3.4:49418221-49418240 | None:intergenic | 55.0% | |
| GGTGGAAGAACCCATAGTGC+AGG | - | chr3.4:49418224-49418243 | None:intergenic | 55.0% | |
| CACGGATGCCACCTGCACTA+TGG | + | chr3.4:49418210-49418229 | MS.gene22627:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 49417189 | 49418259 | 49417189 | ID=MS.gene22627 |
| chr3.4 | mRNA | 49417189 | 49418259 | 49417189 | ID=MS.gene22627.t1;Parent=MS.gene22627 |
| chr3.4 | exon | 49417189 | 49418259 | 49417189 | ID=MS.gene22627.t1.exon1;Parent=MS.gene22627.t1 |
| chr3.4 | CDS | 49417189 | 49418259 | 49417189 | ID=cds.MS.gene22627.t1;Parent=MS.gene22627.t1 |
| Gene Sequence |
| Protein sequence |
