Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42226.t1 | RHN46952.1 | 56 | 386 | 103 | 9 | 1 | 336 | 1 | 369 | 1.60E-99 | 372.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42226.t1 | G7L4M6 | 56.0 | 386 | 103 | 9 | 1 | 336 | 1 | 369 | 1.2e-99 | 372.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42226.t1 | MTR_7g077620 | 57.552 | 384 | 102 | 8 | 1 | 337 | 1 | 370 | 2.25e-135 | 390 |
| MS.gene42226.t1 | MTR_7g077660 | 55.928 | 388 | 102 | 13 | 1 | 339 | 1 | 368 | 1.31e-123 | 360 |
| MS.gene42226.t1 | MTR_7g077650 | 54.615 | 390 | 108 | 12 | 1 | 339 | 1 | 372 | 1.35e-121 | 355 |
| MS.gene42226.t1 | MTR_7g076100 | 57.925 | 347 | 91 | 7 | 1 | 339 | 1 | 300 | 1.26e-120 | 350 |
| MS.gene42226.t1 | MTR_7g076110 | 55.326 | 291 | 102 | 8 | 64 | 339 | 36 | 313 | 4.72e-97 | 290 |
| MS.gene42226.t1 | MTR_5g038260 | 40.100 | 399 | 153 | 16 | 6 | 339 | 6 | 383 | 4.06e-73 | 231 |
| MS.gene42226.t1 | MTR_1g108740 | 42.473 | 372 | 148 | 14 | 3 | 337 | 2 | 344 | 8.94e-71 | 224 |
| MS.gene42226.t1 | MTR_5g038230 | 38.718 | 390 | 141 | 14 | 6 | 337 | 4 | 353 | 8.34e-68 | 216 |
| MS.gene42226.t1 | MTR_5g082770 | 43.289 | 298 | 115 | 9 | 6 | 262 | 4 | 288 | 7.13e-62 | 199 |
| MS.gene42226.t1 | MTR_1g064570 | 36.983 | 411 | 170 | 15 | 5 | 339 | 3 | 400 | 5.20e-60 | 198 |
| MS.gene42226.t1 | MTR_7g076130 | 73.387 | 124 | 27 | 3 | 130 | 247 | 25 | 148 | 2.64e-56 | 180 |
| MS.gene42226.t1 | MTR_1g016150 | 44.565 | 184 | 58 | 5 | 3 | 144 | 2 | 183 | 9.09e-40 | 140 |
| MS.gene42226.t1 | MTR_1g016150 | 41.346 | 104 | 53 | 3 | 175 | 275 | 137 | 235 | 8.55e-12 | 64.7 |
| MS.gene42226.t1 | MTR_5g082780 | 39.662 | 237 | 99 | 8 | 75 | 290 | 1 | 214 | 1.13e-38 | 137 |
| MS.gene42226.t1 | MTR_1g108750 | 57.724 | 123 | 43 | 4 | 6 | 121 | 4 | 124 | 1.45e-29 | 110 |
| MS.gene42226.t1 | MTR_3g114970 | 23.768 | 345 | 199 | 12 | 5 | 301 | 3 | 331 | 3.54e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATAGTAAGTAAAATT+AGG | 0.229231 | 7.3:+29642976 | None:intergenic |
| AAAGAGCACGCCAACCATTT+TGG | 0.235367 | 7.3:-29643125 | MS.gene42226:CDS |
| GCATGTTGACCCTATGTTTA+TGG | 0.235574 | 7.3:+29643489 | None:intergenic |
| ATTCCTTTAGAAGATACTTT+TGG | 0.274093 | 7.3:-29642552 | MS.gene42226:CDS |
| AAGTCTTGATGTATATAAAT+TGG | 0.276584 | 7.3:-29642836 | MS.gene42226:CDS |
| AATGAACAAGCTTGAGAGTT+TGG | 0.278023 | 7.3:-29642782 | MS.gene42226:CDS |
| GGTATACTACAACACTTAAA+AGG | 0.307324 | 7.3:+29643267 | None:intergenic |
| AAGATTACAAAATCCGTAAA+TGG | 0.312492 | 7.3:+29643155 | None:intergenic |
| ATAGAAGTGAGTTTGATTCT+AGG | 0.333522 | 7.3:-29642627 | MS.gene42226:CDS |
| TAATCATTAGGGCTTGTAAT+GGG | 0.360286 | 7.3:+29643189 | None:intergenic |
| AAGAACACATCGATCATGTT+AGG | 0.364419 | 7.3:-29643556 | MS.gene42226:CDS |
| TCACGAGCTATAATCCAAAA+TGG | 0.365846 | 7.3:+29643111 | None:intergenic |
| GTCTGGGCTCTTCATTTGGT+TGG | 0.366330 | 7.3:-29643332 | MS.gene42226:CDS |
| TATGTCGTTGCAGCCATTTA+CGG | 0.367345 | 7.3:-29643168 | MS.gene42226:CDS |
| ACCATTGGTCTTTGAGGATC+AGG | 0.373227 | 7.3:+29643456 | None:intergenic |
| AGGTGTCTGGGCTCTTCATT+TGG | 0.375113 | 7.3:-29643336 | MS.gene42226:CDS |
| AGAAGAGCTACCTCTTAGTT+TGG | 0.376131 | 7.3:-29643594 | MS.gene42226:CDS |
| GCTGCAACGACATAATCATT+AGG | 0.378882 | 7.3:+29643177 | None:intergenic |
| TCTCATAGTAAGTAAAATTA+GGG | 0.387493 | 7.3:+29642977 | None:intergenic |
| GGGTTCAACCACAATTTCAA+TGG | 0.403923 | 7.3:-29642531 | MS.gene42226:CDS |
| AACCTCTTGTTTCTCCAAGT+TGG | 0.405691 | 7.3:-29642713 | MS.gene42226:CDS |
| TTTGAGAGGTGGCAGACTAA+TGG | 0.407722 | 7.3:+29643242 | None:intergenic |
| AAAAGGATTGACTAGAGTTA+TGG | 0.415743 | 7.3:+29643284 | None:intergenic |
| CTGCAACGACATAATCATTA+GGG | 0.419633 | 7.3:+29643178 | None:intergenic |
| TATGGTAAATGAAAGGTGTC+TGG | 0.424585 | 7.3:-29643349 | MS.gene42226:intron |
| AAAGCCTTTCATCGTAGCAT+TGG | 0.428788 | 7.3:+29642923 | None:intergenic |
| TTGAGAGGTGGCAGACTAAT+GGG | 0.429349 | 7.3:+29643243 | None:intergenic |
| ACCAATACCATTGGTCTTTG+AGG | 0.432284 | 7.3:+29643450 | None:intergenic |
| AAGCCTTTCATCGTAGCATT+GGG | 0.439729 | 7.3:+29642924 | None:intergenic |
| TCTTTGAGGATCAGGATCAT+TGG | 0.444334 | 7.3:+29643464 | None:intergenic |
| CACATCGATCATGTTAGGTT+TGG | 0.454086 | 7.3:-29643551 | MS.gene42226:CDS |
| TGATGTATATAAATTGGAAC+TGG | 0.461520 | 7.3:-29642830 | MS.gene42226:CDS |
| AGTGAGTTTGATTCTAGGCT+AGG | 0.464620 | 7.3:-29642622 | MS.gene42226:CDS |
| CAATGACGAAGGTGGCAGAC+TGG | 0.469940 | 7.3:-29643625 | MS.gene42226:CDS |
| TTTGAGATTGATTCTAGGCT+AGG | 0.472790 | 7.3:-29642667 | MS.gene42226:CDS |
| GGTTCAACCACAATTTCAAT+GGG | 0.475405 | 7.3:-29642530 | MS.gene42226:CDS |
| CAAAGCTTAACCATAAACAT+AGG | 0.485104 | 7.3:-29643499 | MS.gene42226:CDS |
| TTGAGATTGATTCTAGGCTA+GGG | 0.501498 | 7.3:-29642666 | MS.gene42226:CDS |
| AACCCAAAAGTATCTTCTAA+AGG | 0.503588 | 7.3:+29642549 | None:intergenic |
| CAACCCAATGCTACGATGAA+AGG | 0.504295 | 7.3:-29642927 | MS.gene42226:CDS |
| AATCTTTGAATGGAGACATA+TGG | 0.507395 | 7.3:-29642891 | MS.gene42226:CDS |
| ATAATCATTAGGGCTTGTAA+TGG | 0.513412 | 7.3:+29643188 | None:intergenic |
| TTGTCAAGAACCAAACTAAG+AGG | 0.513613 | 7.3:+29643584 | None:intergenic |
| ACCTCTCAAATCTGTTTACA+AGG | 0.516115 | 7.3:-29643229 | MS.gene42226:CDS |
| GATCAATCCCATTGAAATTG+TGG | 0.519492 | 7.3:+29642523 | None:intergenic |
| AGGAGGATTGTTGATCTTGA+AGG | 0.522699 | 7.3:+29643017 | None:intergenic |
| TGTAATGGGGTCAGCGGACA+AGG | 0.524243 | 7.3:+29643203 | None:intergenic |
| TAGTTTGGTTCTTGACAAGT+TGG | 0.526962 | 7.3:-29643579 | MS.gene42226:CDS |
| CTTTCATCGTAGCATTGGGT+TGG | 0.532676 | 7.3:+29642928 | None:intergenic |
| TTGGTGTCGTGTGCAAGTCT+TGG | 0.536928 | 7.3:-29643532 | MS.gene42226:CDS |
| GAGCTATAATCCAAAATGGT+TGG | 0.539353 | 7.3:+29643115 | None:intergenic |
| AATGACGAAGGTGGCAGACT+GGG | 0.539805 | 7.3:-29643624 | MS.gene42226:CDS |
| GTGAGTTTGATTCTAGGCTA+GGG | 0.540534 | 7.3:-29642621 | MS.gene42226:CDS |
| CTGATATTTGCTGACAGCCA+TGG | 0.542450 | 7.3:-29643054 | MS.gene42226:CDS |
| GGGATCTATAATGTGAAGGA+TGG | 0.560695 | 7.3:-29642601 | MS.gene42226:CDS |
| TTGAGGATCAGGATCATTGG+TGG | 0.568755 | 7.3:+29643467 | None:intergenic |
| AAAGCTTAACCATAAACATA+GGG | 0.578569 | 7.3:-29643498 | MS.gene42226:CDS |
| ATGGTAAATGAAAGGTGTCT+GGG | 0.598138 | 7.3:-29643348 | MS.gene42226:intron |
| GGGTCATATGTGTCATCGCA+AGG | 0.598782 | 7.3:+29642997 | None:intergenic |
| TTGTAAACAGATTTGAGAGG+TGG | 0.604090 | 7.3:+29643231 | None:intergenic |
| GCTAGGGATCTATAATGTGA+AGG | 0.612222 | 7.3:-29642605 | MS.gene42226:CDS |
| TTCCAACTTGGAGAAACAAG+AGG | 0.613775 | 7.3:+29642711 | None:intergenic |
| GCTAGGGATCTATAATGTGA+AGG | 0.614662 | 7.3:-29642650 | MS.gene42226:CDS |
| AGGATACAATGGTGTGTCCA+TGG | 0.616988 | 7.3:+29643037 | None:intergenic |
| AATCATTAGGGCTTGTAATG+GGG | 0.620431 | 7.3:+29643190 | None:intergenic |
| TCCTGATCCTCAAAGACCAA+TGG | 0.626117 | 7.3:-29643457 | MS.gene42226:intron |
| CTTAGGCTTGGCAATGACGA+AGG | 0.631068 | 7.3:-29643636 | None:intergenic |
| GTTGATCTTGAAGGATACAA+TGG | 0.633785 | 7.3:+29643026 | None:intergenic |
| AGGCTTGGCAATGACGAAGG+TGG | 0.649782 | 7.3:-29643633 | None:intergenic |
| AGGGCTTGTAATGGGGTCAG+CGG | 0.661148 | 7.3:+29643197 | None:intergenic |
| TTGGAACTGGATGCCCAGAG+TGG | 0.675272 | 7.3:-29642817 | MS.gene42226:CDS |
| AAGTATCTTCTAAAGGAATG+CGG | 0.678372 | 7.3:+29642556 | None:intergenic |
| TTTGAATGGAGACATATGGA+TGG | 0.693585 | 7.3:-29642887 | MS.gene42226:CDS |
| GCCTTGTAAACAGATTTGAG+AGG | 0.700590 | 7.3:+29643228 | None:intergenic |
| AGAGGTGGCAGACTAATGGG+AGG | 0.724272 | 7.3:+29643246 | None:intergenic |
| TCATATGTGTCATCGCAAGG+AGG | 0.728268 | 7.3:+29643000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTCTTGATGTATATAAAT+TGG | - | chr7.3:29643312-29643331 | MS.gene42226:CDS | 20.0% |
| !! | TCTCATAGTAAGTAAAATTA+GGG | + | chr7.3:29643174-29643193 | None:intergenic | 20.0% |
| !! | TTCTCATAGTAAGTAAAATT+AGG | + | chr7.3:29643175-29643194 | None:intergenic | 20.0% |
| !!! | AACATTTTATTTGTTGGAAT+CGG | - | chr7.3:29643394-29643413 | MS.gene42226:intron | 20.0% |
| !!! | ACTAGTGTTGTATTTTATAA+AGG | - | chr7.3:29643070-29643089 | MS.gene42226:CDS | 20.0% |
| !!! | TATTTTGTGAAATCTTTGAA+TGG | - | chr7.3:29643247-29643266 | MS.gene42226:CDS | 20.0% |
| ! | AAAGCTTAACCATAAACATA+GGG | - | chr7.3:29642650-29642669 | MS.gene42226:CDS | 25.0% |
| ! | AAGATTACAAAATCCGTAAA+TGG | + | chr7.3:29642996-29643015 | None:intergenic | 25.0% |
| ! | TGATGTATATAAATTGGAAC+TGG | - | chr7.3:29643318-29643337 | MS.gene42226:CDS | 25.0% |
| !!! | ACATTTTATTTGTTGGAATC+GGG | - | chr7.3:29643395-29643414 | MS.gene42226:intron | 25.0% |
| !!! | ATTCCTTTAGAAGATACTTT+TGG | - | chr7.3:29643596-29643615 | MS.gene42226:CDS | 25.0% |
| !!! | GAAGACAACATTTTATTTGT+TGG | - | chr7.3:29643388-29643407 | MS.gene42226:intron | 25.0% |
| !!! | TTCCTTTAGAAGATACTTTT+GGG | - | chr7.3:29643597-29643616 | MS.gene42226:CDS | 25.0% |
| !!! | TTCTTTTTGAGATTGATTCT+AGG | - | chr7.3:29643476-29643495 | MS.gene42226:CDS | 25.0% |
| AAAAGGATTGACTAGAGTTA+TGG | + | chr7.3:29642867-29642886 | None:intergenic | 30.0% | |
| AATCTTTGAATGGAGACATA+TGG | - | chr7.3:29643257-29643276 | MS.gene42226:CDS | 30.0% | |
| ATAATCATTAGGGCTTGTAA+TGG | + | chr7.3:29642963-29642982 | None:intergenic | 30.0% | |
| ATACGGGATAAAAATGTAAC+AGG | + | chr7.3:29642782-29642801 | None:intergenic | 30.0% | |
| ATAGAAGTGAGTTTGATTCT+AGG | - | chr7.3:29643521-29643540 | MS.gene42226:CDS | 30.0% | |
| CAAAGCTTAACCATAAACAT+AGG | - | chr7.3:29642649-29642668 | MS.gene42226:CDS | 30.0% | |
| GGTATACTACAACACTTAAA+AGG | + | chr7.3:29642884-29642903 | None:intergenic | 30.0% | |
| TAATCATTAGGGCTTGTAAT+GGG | + | chr7.3:29642962-29642981 | None:intergenic | 30.0% | |
| TACGGGATAAAAATGTAACA+GGG | + | chr7.3:29642781-29642800 | None:intergenic | 30.0% | |
| ! | AAGTATCTTCTAAAGGAATG+CGG | + | chr7.3:29643595-29643614 | None:intergenic | 30.0% |
| ! | AATCGAATCATTTTCCAACT+TGG | + | chr7.3:29643452-29643471 | None:intergenic | 30.0% |
| ! | TGTTACATTTTTATCCCGTA+TGG | - | chr7.3:29642781-29642800 | MS.gene42226:CDS | 30.0% |
| !! | AACCCAAAAGTATCTTCTAA+AGG | + | chr7.3:29643602-29643621 | None:intergenic | 30.0% |
| !! | CATTTTATTTGTTGGAATCG+GGG | - | chr7.3:29643396-29643415 | MS.gene42226:intron | 30.0% |
| !!! | ATTTGGTTGGTTTTCATTTG+TGG | - | chr7.3:29642829-29642848 | MS.gene42226:CDS | 30.0% |
| AAGAACACATCGATCATGTT+AGG | - | chr7.3:29642592-29642611 | MS.gene42226:CDS | 35.0% | |
| AATCATTAGGGCTTGTAATG+GGG | + | chr7.3:29642961-29642980 | None:intergenic | 35.0% | |
| AATGAACAAGCTTGAGAGTT+TGG | - | chr7.3:29643366-29643385 | MS.gene42226:intron | 35.0% | |
| ACACCTTTCATTTACCATAC+GGG | + | chr7.3:29642798-29642817 | None:intergenic | 35.0% | |
| ACCTCTCAAATCTGTTTACA+AGG | - | chr7.3:29642919-29642938 | MS.gene42226:CDS | 35.0% | |
| CTGCAACGACATAATCATTA+GGG | + | chr7.3:29642973-29642992 | None:intergenic | 35.0% | |
| GACACCTTTCATTTACCATA+CGG | + | chr7.3:29642799-29642818 | None:intergenic | 35.0% | |
| GAGCTATAATCCAAAATGGT+TGG | + | chr7.3:29643036-29643055 | None:intergenic | 35.0% | |
| GGTTCAACCACAATTTCAAT+GGG | - | chr7.3:29643618-29643637 | MS.gene42226:CDS | 35.0% | |
| GTTGATCTTGAAGGATACAA+TGG | + | chr7.3:29643125-29643144 | None:intergenic | 35.0% | |
| TATCCCGTATGGTAAATGAA+AGG | - | chr7.3:29642792-29642811 | MS.gene42226:CDS | 35.0% | |
| TCACGAGCTATAATCCAAAA+TGG | + | chr7.3:29643040-29643059 | None:intergenic | 35.0% | |
| TCTCATGAGTATGCAAAAAC+CGG | - | chr7.3:29642720-29642739 | MS.gene42226:CDS | 35.0% | |
| TTGTAAACAGATTTGAGAGG+TGG | + | chr7.3:29642920-29642939 | None:intergenic | 35.0% | |
| TTGTCAAGAACCAAACTAAG+AGG | + | chr7.3:29642567-29642586 | None:intergenic | 35.0% | |
| TTTGAATGGAGACATATGGA+TGG | - | chr7.3:29643261-29643280 | MS.gene42226:CDS | 35.0% | |
| ! | ATGTGAAGGATGGAAGTTTT+CGG | - | chr7.3:29643557-29643576 | MS.gene42226:CDS | 35.0% |
| ! | TTGAGATTGATTCTAGGCTA+GGG | - | chr7.3:29643482-29643501 | MS.gene42226:CDS | 35.0% |
| ! | TTTGAGATTGATTCTAGGCT+AGG | - | chr7.3:29643481-29643500 | MS.gene42226:CDS | 35.0% |
| !! | ATGGTAAATGAAAGGTGTCT+GGG | - | chr7.3:29642800-29642819 | MS.gene42226:CDS | 35.0% |
| !! | TAGTTTGGTTCTTGACAAGT+TGG | - | chr7.3:29642569-29642588 | MS.gene42226:CDS | 35.0% |
| !! | TATGGTAAATGAAAGGTGTC+TGG | - | chr7.3:29642799-29642818 | MS.gene42226:CDS | 35.0% |
| !! | TTGTTCAAGTTTTCCACTCT+GGG | + | chr7.3:29643347-29643366 | None:intergenic | 35.0% |
| !! | TTTGTTCAAGTTTTCCACTC+TGG | + | chr7.3:29643348-29643367 | None:intergenic | 35.0% |
| AAAAACCGGGAATCCTTGTA+TGG | - | chr7.3:29642734-29642753 | MS.gene42226:CDS | 40.0% | |
| AAAGCCTTTCATCGTAGCAT+TGG | + | chr7.3:29643228-29643247 | None:intergenic | 40.0% | |
| AAGCCTTTCATCGTAGCATT+GGG | + | chr7.3:29643227-29643246 | None:intergenic | 40.0% | |
| ACTCATGAGACCAATACCAT+TGG | + | chr7.3:29642710-29642729 | None:intergenic | 40.0% | |
| AGAAGAGCTACCTCTTAGTT+TGG | - | chr7.3:29642554-29642573 | MS.gene42226:CDS | 40.0% | |
| AGGAGGATTGTTGATCTTGA+AGG | + | chr7.3:29643134-29643153 | None:intergenic | 40.0% | |
| AGTGAGTTTGATTCTAGGCT+AGG | - | chr7.3:29643526-29643545 | MS.gene42226:CDS | 40.0% | |
| CACATCGATCATGTTAGGTT+TGG | - | chr7.3:29642597-29642616 | MS.gene42226:CDS | 40.0% | |
| CTCATGAGTATGCAAAAACC+GGG | - | chr7.3:29642721-29642740 | MS.gene42226:CDS | 40.0% | |
| GCATGTTGACCCTATGTTTA+TGG | + | chr7.3:29642662-29642681 | None:intergenic | 40.0% | |
| GCCTTGTAAACAGATTTGAG+AGG | + | chr7.3:29642923-29642942 | None:intergenic | 40.0% | |
| GCTAGGGATCTATAATGTGA+AGG | - | chr7.3:29643498-29643517 | MS.gene42226:CDS | 40.0% | |
| GCTGCAACGACATAATCATT+AGG | + | chr7.3:29642974-29642993 | None:intergenic | 40.0% | |
| GGGATCTATAATGTGAAGGA+TGG | - | chr7.3:29643502-29643521 | MS.gene42226:CDS | 40.0% | |
| GGGTTCAACCACAATTTCAA+TGG | - | chr7.3:29643617-29643636 | MS.gene42226:CDS | 40.0% | |
| GTGAGTTTGATTCTAGGCTA+GGG | - | chr7.3:29643527-29643546 | MS.gene42226:CDS | 40.0% | |
| TATGTCGTTGCAGCCATTTA+CGG | - | chr7.3:29642980-29642999 | MS.gene42226:CDS | 40.0% | |
| TCCTCAAAGACCAATGGTAT+TGG | - | chr7.3:29642697-29642716 | MS.gene42226:CDS | 40.0% | |
| TTCCAACTTGGAGAAACAAG+AGG | + | chr7.3:29643440-29643459 | None:intergenic | 40.0% | |
| ! | AACCTCTTGTTTCTCCAAGT+TGG | - | chr7.3:29643435-29643454 | MS.gene42226:intron | 40.0% |
| ! | TCTTTGAGGATCAGGATCAT+TGG | + | chr7.3:29642687-29642706 | None:intergenic | 40.0% |
| ! | TGTGAAGGATGGAAGTTTTC+GGG | - | chr7.3:29643558-29643577 | MS.gene42226:CDS | 40.0% |
| !! | ACCAATACCATTGGTCTTTG+AGG | + | chr7.3:29642701-29642720 | None:intergenic | 40.0% |
| AGGATACAATGGTGTGTCCA+TGG | + | chr7.3:29643114-29643133 | None:intergenic | 45.0% | |
| CAACCCAATGCTACGATGAA+AGG | - | chr7.3:29643221-29643240 | MS.gene42226:CDS | 45.0% | |
| GAATGCCATACAAGGATTCC+CGG | + | chr7.3:29642742-29642761 | None:intergenic | 45.0% | |
| GCGACTTAGAATGCCATACA+AGG | + | chr7.3:29642750-29642769 | None:intergenic | 45.0% | |
| TCATATGTGTCATCGCAAGG+AGG | + | chr7.3:29643151-29643170 | None:intergenic | 45.0% | |
| TCCTGATCCTCAAAGACCAA+TGG | - | chr7.3:29642691-29642710 | MS.gene42226:CDS | 45.0% | |
| TTGAGAGGTGGCAGACTAAT+GGG | + | chr7.3:29642908-29642927 | None:intergenic | 45.0% | |
| TTGAGGATCAGGATCATTGG+TGG | + | chr7.3:29642684-29642703 | None:intergenic | 45.0% | |
| TTTGAGAGGTGGCAGACTAA+TGG | + | chr7.3:29642909-29642928 | None:intergenic | 45.0% | |
| ! | CTGATATTTGCTGACAGCCA+TGG | - | chr7.3:29643094-29643113 | MS.gene42226:CDS | 45.0% |
| ! | CTTTCATCGTAGCATTGGGT+TGG | + | chr7.3:29643223-29643242 | None:intergenic | 45.0% |
| !! | AAAGAGCACGCCAACCATTT+TGG | - | chr7.3:29643023-29643042 | MS.gene42226:CDS | 45.0% |
| !! | ACCATTGGTCTTTGAGGATC+AGG | + | chr7.3:29642695-29642714 | None:intergenic | 45.0% |
| AGGTGTCTGGGCTCTTCATT+TGG | - | chr7.3:29642812-29642831 | MS.gene42226:CDS | 50.0% | |
| GGGTCATATGTGTCATCGCA+AGG | + | chr7.3:29643154-29643173 | None:intergenic | 50.0% | |
| GTCTGGGCTCTTCATTTGGT+TGG | - | chr7.3:29642816-29642835 | MS.gene42226:CDS | 50.0% | |
| !! | TTGGTGTCGTGTGCAAGTCT+TGG | - | chr7.3:29642616-29642635 | MS.gene42226:CDS | 50.0% |
| AGAGGTGGCAGACTAATGGG+AGG | + | chr7.3:29642905-29642924 | None:intergenic | 55.0% | |
| TTGGAACTGGATGCCCAGAG+TGG | - | chr7.3:29643331-29643350 | MS.gene42226:CDS | 55.0% | |
| ! | AGGGCTTGTAATGGGGTCAG+CGG | + | chr7.3:29642954-29642973 | None:intergenic | 55.0% |
| ! | TGTAATGGGGTCAGCGGACA+AGG | + | chr7.3:29642948-29642967 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29642525 | 29643645 | 29642525 | ID=MS.gene42226 |
| chr7.3 | mRNA | 29642525 | 29643645 | 29642525 | ID=MS.gene42226.t1;Parent=MS.gene42226 |
| chr7.3 | exon | 29643458 | 29643645 | 29643458 | ID=MS.gene42226.t1.exon1;Parent=MS.gene42226.t1 |
| chr7.3 | CDS | 29643458 | 29643645 | 29643458 | ID=cds.MS.gene42226.t1;Parent=MS.gene42226.t1 |
| chr7.3 | exon | 29642525 | 29643356 | 29642525 | ID=MS.gene42226.t1.exon2;Parent=MS.gene42226.t1 |
| chr7.3 | CDS | 29642525 | 29643356 | 29642525 | ID=cds.MS.gene42226.t1;Parent=MS.gene42226.t1 |
| Gene Sequence |
| Protein sequence |
