Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032784.t1 | XP_003613576.1 | 92.7 | 381 | 27 | 1 | 1 | 380 | 3 | 383 | 1.00E-214 | 755.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032784.t1 | G7K9R3 | 92.7 | 381 | 27 | 1 | 1 | 380 | 3 | 383 | 7.2e-215 | 755.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032784.t1 | MTR_5g038260 | 92.651 | 381 | 27 | 1 | 1 | 380 | 3 | 383 | 0.0 | 734 |
MS.gene032784.t1 | MTR_5g038230 | 85.000 | 380 | 32 | 2 | 1 | 380 | 1 | 355 | 0.0 | 656 |
MS.gene032784.t1 | MTR_1g064570 | 49.132 | 403 | 179 | 8 | 1 | 380 | 1 | 400 | 7.67e-128 | 373 |
MS.gene032784.t1 | MTR_1g108740 | 44.386 | 383 | 166 | 11 | 2 | 378 | 3 | 344 | 5.50e-95 | 287 |
MS.gene032784.t1 | MTR_5g082770 | 50.327 | 306 | 132 | 10 | 1 | 303 | 1 | 289 | 5.59e-84 | 257 |
MS.gene032784.t1 | MTR_7g077620 | 42.935 | 368 | 167 | 13 | 4 | 353 | 5 | 347 | 1.47e-77 | 244 |
MS.gene032784.t1 | MTR_7g077660 | 41.814 | 397 | 178 | 16 | 4 | 380 | 5 | 368 | 2.16e-76 | 241 |
MS.gene032784.t1 | MTR_7g077650 | 40.000 | 405 | 178 | 18 | 4 | 380 | 5 | 372 | 4.69e-72 | 229 |
MS.gene032784.t1 | MTR_5g082780 | 44.444 | 252 | 119 | 7 | 103 | 351 | 1 | 234 | 1.07e-54 | 180 |
MS.gene032784.t1 | MTR_7g076110 | 37.975 | 316 | 161 | 13 | 77 | 380 | 21 | 313 | 4.17e-46 | 160 |
MS.gene032784.t1 | MTR_1g016150 | 44.974 | 189 | 79 | 8 | 2 | 177 | 3 | 179 | 2.22e-41 | 145 |
MS.gene032784.t1 | MTR_1g016150 | 55.072 | 69 | 24 | 1 | 248 | 316 | 175 | 236 | 2.52e-14 | 72.4 |
MS.gene032784.t1 | MTR_7g076100 | 39.921 | 253 | 120 | 10 | 139 | 380 | 69 | 300 | 1.04e-37 | 138 |
MS.gene032784.t1 | MTR_7g076100 | 60.000 | 50 | 19 | 1 | 4 | 53 | 6 | 54 | 7.78e-12 | 65.9 |
MS.gene032784.t1 | MTR_6g023955 | 50.442 | 113 | 48 | 3 | 112 | 217 | 40 | 151 | 1.07e-25 | 103 |
MS.gene032784.t1 | MTR_6g023955 | 57.377 | 61 | 26 | 0 | 319 | 379 | 149 | 209 | 1.45e-18 | 84.0 |
MS.gene032784.t1 | MTR_1g108750 | 45.625 | 160 | 48 | 6 | 1 | 157 | 1 | 124 | 1.41e-25 | 100 |
MS.gene032784.t1 | MTR_3g114990 | 26.683 | 416 | 236 | 17 | 1 | 375 | 20 | 407 | 3.77e-20 | 91.7 |
MS.gene032784.t1 | MTR_3g114970 | 26.276 | 392 | 232 | 17 | 1 | 375 | 1 | 352 | 7.31e-20 | 90.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 79 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTATATTGCTCCTAAAT+TGG | 0.217987 | 5.2:-28417225 | None:intergenic |
TGGTGAGAAGGTTTATAAAT+AGG | 0.247820 | 5.2:+28417839 | MS.gene032784:CDS |
GGTGATCATGTTGATGATTA+AGG | 0.258043 | 5.2:-28417204 | None:intergenic |
TAATCATCTGGACTTGTTAT+AGG | 0.276577 | 5.2:-28417523 | None:intergenic |
ATACAAGACACTGACCATTT+TGG | 0.281472 | 5.2:+28417619 | MS.gene032784:CDS |
TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.2:+28417590 | MS.gene032784:CDS |
ATCAACATGATCACCAATTT+AGG | 0.300778 | 5.2:+28417212 | MS.gene032784:CDS |
CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5.2:-28417754 | None:intergenic |
TTGTTATTCAAGTGACCCTT+GGG | 0.317511 | 5.2:+28417717 | MS.gene032784:CDS |
TTAAGCATTGTCAATTCTAA+TGG | 0.317587 | 5.2:-28417322 | None:intergenic |
ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.2:-28417421 | None:intergenic |
TTGTCGAAACTTGAGAGTTT+AGG | 0.326449 | 5.2:+28417943 | MS.gene032784:CDS |
GCCACCCATCGATAATTATA+TGG | 0.334313 | 5.2:+28417450 | MS.gene032784:CDS |
TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.2:+28417143 | MS.gene032784:CDS |
CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5.2:+28417148 | MS.gene032784:CDS |
TTCTTTACATGTATTTAAGT+TGG | 0.365055 | 5.2:+28417888 | MS.gene032784:CDS |
TCGATGGGTGGCAAACTAAT+AGG | 0.371653 | 5.2:-28417439 | None:intergenic |
GCATAGCCATGGAGCGAGAT+TGG | 0.373158 | 5.2:+28417074 | None:intergenic |
AATGGATACACTCTATTTGC+TGG | 0.375390 | 5.2:-28417304 | None:intergenic |
CCCTTGAAGTAAGGTTTGTA+AGG | 0.376047 | 5.2:-28418156 | None:intergenic |
CCCTTACAAACCTTACTTCA+AGG | 0.383312 | 5.2:+28418155 | MS.gene032784:CDS |
CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5.2:-28417148 | None:intergenic |
GGTGAGAAGGTTTATAAATA+GGG | 0.399787 | 5.2:+28417840 | MS.gene032784:CDS |
TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.2:+28417801 | MS.gene032784:CDS |
CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.2:+28417651 | MS.gene032784:CDS |
TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.2:-28417633 | None:intergenic |
AACGTAAAACATGGAAGCTT+GGG | 0.422361 | 5.2:+28418123 | MS.gene032784:CDS |
AAAAGGTGGCACAACCCATA+TGG | 0.433261 | 5.2:-28418190 | None:intergenic |
AGGGTATGACACCTCCCATA+TGG | 0.446486 | 5.2:+28418175 | MS.gene032784:CDS |
CATAGCCATGGAGCGAGATT+GGG | 0.453674 | 5.2:+28417075 | None:intergenic |
TCTAATCAATTCCACTGAAA+AGG | 0.457215 | 5.2:-28418207 | None:intergenic |
TAACGTAAAACATGGAAGCT+TGG | 0.463159 | 5.2:+28418122 | MS.gene032784:CDS |
GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.2:+28417827 | MS.gene032784:CDS |
TTACGACTTCAATGTGCATA+AGG | 0.467976 | 5.2:+28417483 | MS.gene032784:CDS |
GGTGTCATACCCTTGAAGTA+AGG | 0.468768 | 5.2:-28418165 | None:intergenic |
TCAAAAGGACCTCTAGGATA+AGG | 0.471573 | 5.2:-28418087 | None:intergenic |
TTTGTTATTCAAGTGACCCT+TGG | 0.473541 | 5.2:+28417716 | MS.gene032784:CDS |
CCTTACAAACCTTACTTCAA+GGG | 0.500600 | 5.2:+28418156 | MS.gene032784:CDS |
GCTGCAACCACATAATCATC+TGG | 0.504303 | 5.2:-28417535 | None:intergenic |
TTATATATTCCCATATCAAA+AGG | 0.509410 | 5.2:-28418102 | None:intergenic |
TTCAAGTGACCCTTGGGGTG+AGG | 0.511989 | 5.2:+28417723 | MS.gene032784:CDS |
TTTCTGGACTCTTCTCTGAA+GGG | 0.527378 | 5.2:-28417261 | None:intergenic |
GGGTATGACACCTCCCATAT+GGG | 0.531392 | 5.2:+28418176 | MS.gene032784:CDS |
CTTAACAACAAGAGATGTTG+TGG | 0.537010 | 5.2:+28417340 | MS.gene032784:CDS |
GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.2:-28417796 | None:intergenic |
AAAGGTGGCACAACCCATAT+GGG | 0.541900 | 5.2:-28418189 | None:intergenic |
TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.2:+28417577 | MS.gene032784:CDS |
ACGTACCATATAATTATCGA+TGG | 0.547777 | 5.2:-28417455 | None:intergenic |
TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.2:+28417805 | MS.gene032784:CDS |
AAGTTGGAATTGAATGACAA+AGG | 0.553747 | 5.2:+28417904 | MS.gene032784:CDS |
CCTTGAAGTAAGGTTTGTAA+GGG | 0.554707 | 5.2:-28418155 | None:intergenic |
TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5.2:-28417569 | None:intergenic |
CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.2:-28418093 | None:intergenic |
TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.2:+28417804 | MS.gene032784:CDS |
AACAAGTCCAGATGATTATG+TGG | 0.565322 | 5.2:+28417528 | MS.gene032784:CDS |
GGAATTCTTTCCTCACCCCA+AGG | 0.565481 | 5.2:-28417733 | None:intergenic |
ACGAAGAAGATGTCATCACT+TGG | 0.566470 | 5.2:+28417392 | MS.gene032784:CDS |
TAATTATTATAATGAAGTAC+CGG | 0.574818 | 5.2:+28418062 | MS.gene032784:CDS |
GGACCTCTAGGATAAGGAAC+CGG | 0.579650 | 5.2:-28418081 | None:intergenic |
AATCAATTCCACTGAAAAGG+TGG | 0.581608 | 5.2:-28418204 | None:intergenic |
ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.2:+28417646 | MS.gene032784:CDS |
GAATTCTTTCCTCACCCCAA+GGG | 0.583805 | 5.2:-28417732 | None:intergenic |
GTTTGCCCAATCTCGCTCCA+TGG | 0.583904 | 5.2:-28417080 | None:intergenic |
TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5.2:-28417570 | None:intergenic |
GTTGTGGATCAAGTCATGGC+TGG | 0.604230 | 5.2:+28417356 | MS.gene032784:CDS |
TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5.2:+28417671 | MS.gene032784:CDS |
AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.2:+28417815 | MS.gene032784:CDS |
GGAATATATAACGTAAAACA+TGG | 0.617818 | 5.2:+28418114 | MS.gene032784:CDS |
CGAAGAAGATGTCATCACTT+GGG | 0.623448 | 5.2:+28417393 | MS.gene032784:CDS |
ACCATATAATTATCGATGGG+TGG | 0.627867 | 5.2:-28417451 | None:intergenic |
CGTACCATATAATTATCGAT+GGG | 0.639191 | 5.2:-28417454 | None:intergenic |
GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5.2:+28417553 | MS.gene032784:CDS |
AGATGTTGTGGATCAAGTCA+TGG | 0.649193 | 5.2:+28417352 | MS.gene032784:CDS |
GTACCGGTTCCTTATCCTAG+AGG | 0.650762 | 5.2:+28418078 | MS.gene032784:CDS |
AGGGTCAACAATATCAACAA+AGG | 0.663310 | 5.2:+28417859 | MS.gene032784:CDS |
TGTTATTCAAGTGACCCTTG+GGG | 0.675329 | 5.2:+28417718 | MS.gene032784:CDS |
ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.2:+28417819 | MS.gene032784:CDS |
GGTGGCACAACCCATATGGG+AGG | 0.700789 | 5.2:-28418186 | None:intergenic |
TGTTATAGGATCAACTGACA+AGG | 0.708968 | 5.2:-28417509 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTATTATAATGAAGTAC+CGG | + | chr5.2:28418062-28418081 | MS.gene032784:CDS | 15.0% |
!! | TACTTATTTAGTGAAATCAT+TGG | + | chr5.2:28417801-28417820 | MS.gene032784:CDS | 20.0% |
!! | TTATATATTCCCATATCAAA+AGG | - | chr5.2:28418105-28418124 | None:intergenic | 20.0% |
!! | TTCTTTACATGTATTTAAGT+TGG | + | chr5.2:28417888-28417907 | MS.gene032784:CDS | 20.0% |
! | CTTCTTTGTAACAAAACATT+TGG | - | chr5.2:28417757-28417776 | None:intergenic | 25.0% |
! | GATTTCACTAAATAAGTAAG+TGG | - | chr5.2:28417799-28417818 | None:intergenic | 25.0% |
! | GGAATATATAACGTAAAACA+TGG | + | chr5.2:28418114-28418133 | MS.gene032784:CDS | 25.0% |
! | TATTTAGTGAAATCATTGGA+GGG | + | chr5.2:28417805-28417824 | MS.gene032784:CDS | 25.0% |
! | TTATTTAGTGAAATCATTGG+AGG | + | chr5.2:28417804-28417823 | MS.gene032784:CDS | 25.0% |
!! | TTAAGCATTGTCAATTCTAA+TGG | - | chr5.2:28417325-28417344 | None:intergenic | 25.0% |
!!! | AATTTTTTTCCAACGAGTTA+CGG | - | chr5.2:28417683-28417702 | None:intergenic | 25.0% |
AAGTTGGAATTGAATGACAA+AGG | + | chr5.2:28417904-28417923 | MS.gene032784:CDS | 30.0% | |
ACGTACCATATAATTATCGA+TGG | - | chr5.2:28417458-28417477 | None:intergenic | 30.0% | |
ATCAACATGATCACCAATTT+AGG | + | chr5.2:28417212-28417231 | MS.gene032784:CDS | 30.0% | |
ATCGACATTACATTCTACAA+TGG | + | chr5.2:28417646-28417665 | MS.gene032784:CDS | 30.0% | |
CATTACATTCTACAATGGTT+TGG | + | chr5.2:28417651-28417670 | MS.gene032784:CDS | 30.0% | |
CGTACCATATAATTATCGAT+GGG | - | chr5.2:28417457-28417476 | None:intergenic | 30.0% | |
GCATTATATTGCTCCTAAAT+TGG | - | chr5.2:28417228-28417247 | None:intergenic | 30.0% | |
GGTGAGAAGGTTTATAAATA+GGG | + | chr5.2:28417840-28417859 | MS.gene032784:CDS | 30.0% | |
TAATGTCGATGAAACCAAAA+TGG | - | chr5.2:28417636-28417655 | None:intergenic | 30.0% | |
TGGTGAGAAGGTTTATAAAT+AGG | + | chr5.2:28417839-28417858 | MS.gene032784:CDS | 30.0% | |
TTGAACCAATTGATCACATT+TGG | + | chr5.2:28417143-28417162 | MS.gene032784:CDS | 30.0% | |
!! | TAATCATCTGGACTTGTTAT+AGG | - | chr5.2:28417526-28417545 | None:intergenic | 30.0% |
AACAAGTCCAGATGATTATG+TGG | + | chr5.2:28417528-28417547 | MS.gene032784:CDS | 35.0% | |
AACGTAAAACATGGAAGCTT+GGG | + | chr5.2:28418123-28418142 | MS.gene032784:CDS | 35.0% | |
AATGGATACACTCTATTTGC+TGG | - | chr5.2:28417307-28417326 | None:intergenic | 35.0% | |
ACCATATAATTATCGATGGG+TGG | - | chr5.2:28417454-28417473 | None:intergenic | 35.0% | |
AGGGTCAACAATATCAACAA+AGG | + | chr5.2:28417859-28417878 | MS.gene032784:CDS | 35.0% | |
ATAGGAGCAACATCCTTAAA+AGG | - | chr5.2:28417424-28417443 | None:intergenic | 35.0% | |
CCAAACCAAATGTGATCAAT+TGG | - | chr5.2:28417151-28417170 | None:intergenic | 35.0% | |
CCAATTGATCACATTTGGTT+TGG | + | chr5.2:28417148-28417167 | MS.gene032784:CDS | 35.0% | |
CCTTACAAACCTTACTTCAA+GGG | + | chr5.2:28418156-28418175 | MS.gene032784:CDS | 35.0% | |
CCTTGAAGTAAGGTTTGTAA+GGG | - | chr5.2:28418158-28418177 | None:intergenic | 35.0% | |
CTTAACAACAAGAGATGTTG+TGG | + | chr5.2:28417340-28417359 | MS.gene032784:CDS | 35.0% | |
TAACGTAAAACATGGAAGCT+TGG | + | chr5.2:28418122-28418141 | MS.gene032784:CDS | 35.0% | |
TGTTATAGGATCAACTGACA+AGG | - | chr5.2:28417512-28417531 | None:intergenic | 35.0% | |
TTACGACTTCAATGTGCATA+AGG | + | chr5.2:28417483-28417502 | MS.gene032784:CDS | 35.0% | |
TTGGTTTCGTCTGCAAAAAT+TGG | + | chr5.2:28417167-28417186 | MS.gene032784:CDS | 35.0% | |
TTGTCGAAACTTGAGAGTTT+AGG | + | chr5.2:28417943-28417962 | MS.gene032784:CDS | 35.0% | |
! | ATACAAGACACTGACCATTT+TGG | + | chr5.2:28417619-28417638 | MS.gene032784:CDS | 35.0% |
! | TAAAAGCAGGACAAGAGTTT+TGG | + | chr5.2:28417590-28417609 | MS.gene032784:CDS | 35.0% |
! | TTGTTATTCAAGTGACCCTT+GGG | + | chr5.2:28417717-28417736 | MS.gene032784:CDS | 35.0% |
!! | CTAAACAAACATCGCTTTTC+TGG | - | chr5.2:28417280-28417299 | None:intergenic | 35.0% |
!! | GGTGATCATGTTGATGATTA+AGG | - | chr5.2:28417207-28417226 | None:intergenic | 35.0% |
!! | TGTCTAGCTTTCATAAAAGC+AGG | + | chr5.2:28417577-28417596 | MS.gene032784:CDS | 35.0% |
!! | TTTGTTATTCAAGTGACCCT+TGG | + | chr5.2:28417716-28417735 | MS.gene032784:CDS | 35.0% |
!!! | AATGTTTTGTTTGTGGGTGA+TGG | + | chr5.2:28417970-28417989 | MS.gene032784:CDS | 35.0% |
!!! | AGGAGACAATGTTTTGTTTG+TGG | + | chr5.2:28417963-28417982 | MS.gene032784:CDS | 35.0% |
!!! | GGAGACAATGTTTTGTTTGT+GGG | + | chr5.2:28417964-28417983 | MS.gene032784:CDS | 35.0% |
ACGAAGAAGATGTCATCACT+TGG | + | chr5.2:28417392-28417411 | MS.gene032784:CDS | 40.0% | |
AGATGTTGTGGATCAAGTCA+TGG | + | chr5.2:28417352-28417371 | MS.gene032784:CDS | 40.0% | |
CCCTTACAAACCTTACTTCA+AGG | + | chr5.2:28418155-28418174 | MS.gene032784:CDS | 40.0% | |
CCCTTGAAGTAAGGTTTGTA+AGG | - | chr5.2:28418159-28418178 | None:intergenic | 40.0% | |
CGAAGAAGATGTCATCACTT+GGG | + | chr5.2:28417393-28417412 | MS.gene032784:CDS | 40.0% | |
GCCACCCATCGATAATTATA+TGG | + | chr5.2:28417450-28417469 | MS.gene032784:CDS | 40.0% | |
TGTTATTCAAGTGACCCTTG+GGG | + | chr5.2:28417718-28417737 | MS.gene032784:CDS | 40.0% | |
TTATGAAAGCTAGACAGCCA+CGG | - | chr5.2:28417573-28417592 | None:intergenic | 40.0% | |
TTTCTGGACTCTTCTCTGAA+GGG | - | chr5.2:28417264-28417283 | None:intergenic | 40.0% | |
! | CACTTGGGAGAATCCTTTTA+AGG | + | chr5.2:28417408-28417427 | MS.gene032784:CDS | 40.0% |
! | CCTAGAGGTCCTTTTGATAT+GGG | + | chr5.2:28418093-28418112 | MS.gene032784:CDS | 40.0% |
! | TCCTAGAGGTCCTTTTGATA+TGG | + | chr5.2:28418092-28418111 | MS.gene032784:CDS | 40.0% |
! | TTTTCTGGACTCTTCTCTGA+AGG | - | chr5.2:28417265-28417284 | None:intergenic | 40.0% |
!! | TCAAAAGGACCTCTAGGATA+AGG | - | chr5.2:28418090-28418109 | None:intergenic | 40.0% |
AAAAGGTGGCACAACCCATA+TGG | - | chr5.2:28418193-28418212 | None:intergenic | 45.0% | |
AAAGGTGGCACAACCCATAT+GGG | - | chr5.2:28418192-28418211 | None:intergenic | 45.0% | |
AATCATTGGAGGGAGAGTTG+TGG | + | chr5.2:28417815-28417834 | MS.gene032784:CDS | 45.0% | |
CCCATATCAAAAGGACCTCT+AGG | - | chr5.2:28418096-28418115 | None:intergenic | 45.0% | |
GAATTCTTTCCTCACCCCAA+GGG | - | chr5.2:28417735-28417754 | None:intergenic | 45.0% | |
GCTGCAACCACATAATCATC+TGG | - | chr5.2:28417538-28417557 | None:intergenic | 45.0% | |
TATGAAAGCTAGACAGCCAC+GGG | - | chr5.2:28417572-28417591 | None:intergenic | 45.0% | |
TCGATGGGTGGCAAACTAAT+AGG | - | chr5.2:28417442-28417461 | None:intergenic | 45.0% | |
! | GGTGTCATACCCTTGAAGTA+AGG | - | chr5.2:28418168-28418187 | None:intergenic | 45.0% |
AGGGTATGACACCTCCCATA+TGG | + | chr5.2:28418175-28418194 | MS.gene032784:CDS | 50.0% | |
ATTGGAGGGAGAGTTGTGGA+TGG | + | chr5.2:28417819-28417838 | MS.gene032784:CDS | 50.0% | |
GAGAGTTGTGGATGGTGAGA+AGG | + | chr5.2:28417827-28417846 | MS.gene032784:CDS | 50.0% | |
GCAGCAATTTACACTACCCG+TGG | + | chr5.2:28417553-28417572 | MS.gene032784:CDS | 50.0% | |
GGAATTCTTTCCTCACCCCA+AGG | - | chr5.2:28417736-28417755 | None:intergenic | 50.0% | |
GGGTATGACACCTCCCATAT+GGG | + | chr5.2:28418176-28418195 | MS.gene032784:CDS | 50.0% | |
GTTGTGGATCAAGTCATGGC+TGG | + | chr5.2:28417356-28417375 | MS.gene032784:CDS | 50.0% | |
TGGTGTATGCCGTAACTCGT+TGG | + | chr5.2:28417671-28417690 | MS.gene032784:CDS | 50.0% | |
!! | GGACCTCTAGGATAAGGAAC+CGG | - | chr5.2:28418084-28418103 | None:intergenic | 50.0% |
!! | GTACCGGTTCCTTATCCTAG+AGG | + | chr5.2:28418078-28418097 | MS.gene032784:CDS | 50.0% |
TTCAAGTGACCCTTGGGGTG+AGG | + | chr5.2:28417723-28417742 | MS.gene032784:CDS | 55.0% | |
! | GGGTTGTGCCACCTTTTCAG+TGG | + | chr5.2:28418196-28418215 | MS.gene032784:CDS | 55.0% |
GGTGGCACAACCCATATGGG+AGG | - | chr5.2:28418189-28418208 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 28417082 | 28418224 | 28417082 | ID=MS.gene032784 |
chr5.2 | mRNA | 28417082 | 28418224 | 28417082 | ID=MS.gene032784.t1;Parent=MS.gene032784 |
chr5.2 | exon | 28417082 | 28418224 | 28417082 | ID=MS.gene032784.t1.exon1;Parent=MS.gene032784.t1 |
chr5.2 | CDS | 28417082 | 28418224 | 28417082 | ID=cds.MS.gene032784.t1;Parent=MS.gene032784.t1 |
Gene Sequence |
Protein sequence |