Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73460.t1 | XP_003592579.1 | 88.2 | 348 | 36 | 2 | 1 | 347 | 1 | 344 | 2.20E-176 | 628.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73460.t1 | G7IAV9 | 88.2 | 348 | 36 | 2 | 1 | 347 | 1 | 344 | 1.6e-176 | 628.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73460.t1 | MTR_1g108740 | 88.218 | 348 | 36 | 2 | 1 | 347 | 1 | 344 | 0.0 | 630 |
MS.gene73460.t1 | MTR_1g016150 | 76.531 | 196 | 40 | 2 | 1 | 191 | 1 | 195 | 1.60e-105 | 309 |
MS.gene73460.t1 | MTR_1g016150 | 84.127 | 63 | 10 | 0 | 245 | 307 | 175 | 237 | 3.62e-27 | 107 |
MS.gene73460.t1 | MTR_5g038260 | 44.703 | 387 | 163 | 12 | 3 | 347 | 4 | 381 | 1.76e-95 | 289 |
MS.gene73460.t1 | MTR_7g077650 | 44.681 | 376 | 173 | 15 | 1 | 347 | 1 | 370 | 1.10e-84 | 261 |
MS.gene73460.t1 | MTR_7g077620 | 45.098 | 357 | 163 | 12 | 1 | 332 | 1 | 349 | 3.47e-82 | 255 |
MS.gene73460.t1 | MTR_5g038230 | 41.192 | 386 | 152 | 13 | 3 | 347 | 2 | 353 | 6.33e-82 | 253 |
MS.gene73460.t1 | MTR_7g077660 | 43.316 | 374 | 177 | 14 | 1 | 347 | 1 | 366 | 1.82e-79 | 247 |
MS.gene73460.t1 | MTR_5g082770 | 47.368 | 304 | 125 | 10 | 5 | 292 | 4 | 288 | 1.89e-78 | 242 |
MS.gene73460.t1 | MTR_1g064570 | 41.191 | 403 | 165 | 13 | 7 | 347 | 6 | 398 | 1.93e-78 | 246 |
MS.gene73460.t1 | MTR_5g082780 | 43.182 | 220 | 104 | 5 | 112 | 319 | 2 | 212 | 6.05e-46 | 156 |
MS.gene73460.t1 | MTR_7g076110 | 40.206 | 291 | 143 | 12 | 86 | 347 | 23 | 311 | 3.67e-45 | 157 |
MS.gene73460.t1 | MTR_7g076100 | 43.096 | 239 | 105 | 8 | 134 | 347 | 66 | 298 | 5.60e-45 | 156 |
MS.gene73460.t1 | MTR_7g076100 | 66.667 | 48 | 16 | 0 | 5 | 52 | 6 | 53 | 9.81e-17 | 80.1 |
MS.gene73460.t1 | MTR_1g108750 | 49.673 | 153 | 47 | 3 | 3 | 155 | 2 | 124 | 6.37e-36 | 127 |
MS.gene73460.t1 | MTR_3g114970 | 22.051 | 390 | 206 | 17 | 6 | 339 | 5 | 352 | 1.59e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 52 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATATTGGGATAGTCCTTAT+TGG | 0.201013 | 1.4:+83406851 | MS.gene73460:CDS |
AAGATCGTATCCTTTAATTT+TGG | 0.210117 | 1.4:+83406454 | MS.gene73460:CDS |
CTTGTTGAAACTTGAGAGTT+TGG | 0.232269 | 1.4:+83406681 | MS.gene73460:CDS |
ATCTGAATAACCAAAATTAA+AGG | 0.257469 | 1.4:-83406464 | None:intergenic |
ATAGAATGAAGAGACGAAAT+TGG | 0.272589 | 1.4:+83405846 | None:intergenic |
TATCCTTAAAAGGACTCATT+AGG | 0.272862 | 1.4:-83406204 | None:intergenic |
TTGGAAGAGATCAGCAAAAT+TGG | 0.286104 | 1.4:+83406350 | MS.gene73460:CDS |
ATGCAAGGTATATCCTTAAA+AGG | 0.293423 | 1.4:-83406214 | None:intergenic |
GTGTTCAAGTTTCTCACTTT+TGG | 0.303025 | 1.4:-83406659 | None:intergenic |
GACTCAATTTACTTTGCTAA+TGG | 0.321675 | 1.4:+83406781 | MS.gene73460:CDS |
GTTCTTCTATAGAGAAGAAT+TGG | 0.352953 | 1.4:+83406047 | MS.gene73460:CDS |
AGGACTCATTAGGGTTATAA+TGG | 0.356886 | 1.4:-83406194 | None:intergenic |
CAATAAGGACTATCCCAATA+TGG | 0.359462 | 1.4:-83406850 | None:intergenic |
CACATAGATCATGTTTCGTT+TGG | 0.369870 | 1.4:+83405920 | MS.gene73460:CDS |
CTAGTTTCAATTTGTATACA+TGG | 0.383970 | 1.4:-83406633 | None:intergenic |
GGTTATTCAGATGATACTTC+GGG | 0.390839 | 1.4:+83406475 | MS.gene73460:CDS |
ATCCTTAAAAGGACTCATTA+GGG | 0.399472 | 1.4:-83406203 | None:intergenic |
GCTACAATCATATAATCATT+TGG | 0.403630 | 1.4:-83406298 | None:intergenic |
TAAAGGATACGATCTTGTTT+CGG | 0.413966 | 1.4:-83406447 | None:intergenic |
AAATGTGGCAGAATCCAATA+AGG | 0.445291 | 1.4:-83406865 | None:intergenic |
TTGTTGAAACTTGAGAGTTT+GGG | 0.445712 | 1.4:+83406682 | MS.gene73460:CDS |
CGGCATACCTGATATTGAAA+AGG | 0.454768 | 1.4:-83406100 | None:intergenic |
AAGATCTATAATATGAAGAA+TGG | 0.455106 | 1.4:+83406808 | MS.gene73460:CDS |
ATAGAGAAGAATTGGTTGTA+TGG | 0.455558 | 1.4:+83406055 | MS.gene73460:CDS |
AAGAGCTATGGATGGTAAGA+AGG | 0.465590 | 1.4:+83406587 | MS.gene73460:CDS |
TAGAATGAAGAGACGAAATT+GGG | 0.472065 | 1.4:+83405847 | None:intergenic |
TCGCTCTGTGGCTCTAGCCA+TGG | 0.491261 | 1.4:+83406142 | MS.gene73460:CDS |
TGGTTATTCAGATGATACTT+CGG | 0.502123 | 1.4:+83406474 | MS.gene73460:CDS |
TTGTCAAGAATCAAACTAAG+AGG | 0.512709 | 1.4:-83405887 | None:intergenic |
TGTGGTAATCTTGCTTATGT+TGG | 0.520193 | 1.4:+83406331 | MS.gene73460:CDS |
CAAGAATCAAACTAAGAGGA+AGG | 0.538427 | 1.4:-83405883 | None:intergenic |
CATTAGCATTGGTAGTGCAA+TGG | 0.541084 | 1.4:-83406005 | None:intergenic |
TATAAATCTCATTGAAAATG+TGG | 0.541531 | 1.4:-83406880 | None:intergenic |
TCTGTGGCTCTAGCCATGGT+TGG | 0.545055 | 1.4:+83406146 | MS.gene73460:CDS |
CGACACGGAAATTGAATCTC+CGG | 0.546457 | 1.4:-83406728 | None:intergenic |
GGCATACCTGATATTGAAAA+GGG | 0.548895 | 1.4:-83406099 | None:intergenic |
AAAGTTTACGATTATTAGCA+CGG | 0.557209 | 1.4:-83406120 | None:intergenic |
TTGGTGCTGTGTGCAAGACT+TGG | 0.560056 | 1.4:+83405939 | MS.gene73460:CDS |
ACCTCTCAATTCTGTTAACA+AGG | 0.561179 | 1.4:+83406246 | MS.gene73460:CDS |
AATCACTAGAAGAAGAGCTA+TGG | 0.566646 | 1.4:+83406575 | MS.gene73460:CDS |
ATTGTAGCAATTTATGATTG+TGG | 0.568571 | 1.4:+83406313 | MS.gene73460:CDS |
CTTCTTCTAGTGATTTCACA+AGG | 0.577230 | 1.4:-83406567 | None:intergenic |
CGGAGATTCAATTTCCGTGT+CGG | 0.586695 | 1.4:+83406729 | MS.gene73460:CDS |
AAGAATCAAACTAAGAGGAA+GGG | 0.607697 | 1.4:-83405882 | None:intergenic |
CTACAAATGCAAACCAACCA+TGG | 0.610070 | 1.4:-83406159 | None:intergenic |
TTGTTAACAGAATTGAGAGG+TGG | 0.610311 | 1.4:-83406244 | None:intergenic |
AATCGTAAACTTTCGCTCTG+TGG | 0.619251 | 1.4:+83406130 | MS.gene73460:CDS |
TGTTAACAGAATTGAGAGGT+GGG | 0.631633 | 1.4:-83406243 | None:intergenic |
AGAGGTGGGAGAGTAATGCA+AGG | 0.635075 | 1.4:-83406229 | None:intergenic |
AGAGAAATATGACGCCGACA+CGG | 0.636199 | 1.4:-83406743 | None:intergenic |
ACTAGAAGAAGAGCTATGGA+TGG | 0.645211 | 1.4:+83406579 | MS.gene73460:CDS |
ACCTTGTTAACAGAATTGAG+AGG | 0.720165 | 1.4:-83406247 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGATTTCATATTTTATAA+AGG | + | chr1.4:83406403-83406422 | MS.gene73460:CDS | 10.0% |
!! | AAGATCTATAATATGAAGAA+TGG | + | chr1.4:83406808-83406827 | MS.gene73460:CDS | 20.0% |
!! | ATCTGAATAACCAAAATTAA+AGG | - | chr1.4:83406467-83406486 | None:intergenic | 20.0% |
!!! | ATGGTATTTTAAACAAAAGA+TGG | + | chr1.4:83406074-83406093 | MS.gene73460:CDS | 20.0% |
!!! | GGAGATAACATTTTATTTTT+AGG | + | chr1.4:83406703-83406722 | MS.gene73460:CDS | 20.0% |
!!! | TAATCATTTGGACTTTTTAT+TGG | - | chr1.4:83406289-83406308 | None:intergenic | 20.0% |
!!! | TTTTGAATTGATGATTTTGA+TGG | - | chr1.4:83405985-83406004 | None:intergenic | 20.0% |
! | AAAGTTTACGATTATTAGCA+CGG | - | chr1.4:83406123-83406142 | None:intergenic | 25.0% |
! | ATTGTAGCAATTTATGATTG+TGG | + | chr1.4:83406313-83406332 | MS.gene73460:CDS | 25.0% |
! | CTAGTTTCAATTTGTATACA+TGG | - | chr1.4:83406636-83406655 | None:intergenic | 25.0% |
! | GCTACAATCATATAATCATT+TGG | - | chr1.4:83406301-83406320 | None:intergenic | 25.0% |
!! | TAGTTATCGTTTTCCATATT+GGG | + | chr1.4:83406837-83406856 | MS.gene73460:CDS | 25.0% |
!! | TTTTCAGATATCATTAGCAT+TGG | - | chr1.4:83406019-83406038 | None:intergenic | 25.0% |
!!! | AACATTTTATTTTTAGGAGC+CGG | + | chr1.4:83406709-83406728 | MS.gene73460:CDS | 25.0% |
!!! | AAGATCGTATCCTTTAATTT+TGG | + | chr1.4:83406454-83406473 | MS.gene73460:CDS | 25.0% |
AAGAATCAAACTAAGAGGAA+GGG | - | chr1.4:83405885-83405904 | None:intergenic | 30.0% | |
ATAGAGAAGAATTGGTTGTA+TGG | + | chr1.4:83406055-83406074 | MS.gene73460:CDS | 30.0% | |
ATCCTTAAAAGGACTCATTA+GGG | - | chr1.4:83406206-83406225 | None:intergenic | 30.0% | |
ATGCAAGGTATATCCTTAAA+AGG | - | chr1.4:83406217-83406236 | None:intergenic | 30.0% | |
GACTCAATTTACTTTGCTAA+TGG | + | chr1.4:83406781-83406800 | MS.gene73460:CDS | 30.0% | |
GTTCTTCTATAGAGAAGAAT+TGG | + | chr1.4:83406047-83406066 | MS.gene73460:CDS | 30.0% | |
TATCCTTAAAAGGACTCATT+AGG | - | chr1.4:83406207-83406226 | None:intergenic | 30.0% | |
TGGTTATTCAGATGATACTT+CGG | + | chr1.4:83406474-83406493 | MS.gene73460:CDS | 30.0% | |
TTGTCAAGAATCAAACTAAG+AGG | - | chr1.4:83405890-83405909 | None:intergenic | 30.0% | |
TTGTTGAAACTTGAGAGTTT+GGG | + | chr1.4:83406682-83406701 | MS.gene73460:CDS | 30.0% | |
! | CTAGTTATCGTTTTCCATAT+TGG | + | chr1.4:83406836-83406855 | MS.gene73460:CDS | 30.0% |
! | TAAAGGATACGATCTTGTTT+CGG | - | chr1.4:83406450-83406469 | None:intergenic | 30.0% |
AAATGTGGCAGAATCCAATA+AGG | - | chr1.4:83406868-83406887 | None:intergenic | 35.0% | |
AATCACTAGAAGAAGAGCTA+TGG | + | chr1.4:83406575-83406594 | MS.gene73460:CDS | 35.0% | |
ACCTCTCAATTCTGTTAACA+AGG | + | chr1.4:83406246-83406265 | MS.gene73460:CDS | 35.0% | |
ACCTTGTTAACAGAATTGAG+AGG | - | chr1.4:83406250-83406269 | None:intergenic | 35.0% | |
AGGACTCATTAGGGTTATAA+TGG | - | chr1.4:83406197-83406216 | None:intergenic | 35.0% | |
CAAGAATCAAACTAAGAGGA+AGG | - | chr1.4:83405886-83405905 | None:intergenic | 35.0% | |
CAATAAGGACTATCCCAATA+TGG | - | chr1.4:83406853-83406872 | None:intergenic | 35.0% | |
CACATAGATCATGTTTCGTT+TGG | + | chr1.4:83405920-83405939 | MS.gene73460:CDS | 35.0% | |
CATATTGGGATAGTCCTTAT+TGG | + | chr1.4:83406851-83406870 | MS.gene73460:CDS | 35.0% | |
CTTCTTCTAGTGATTTCACA+AGG | - | chr1.4:83406570-83406589 | None:intergenic | 35.0% | |
CTTGTTGAAACTTGAGAGTT+TGG | + | chr1.4:83406681-83406700 | MS.gene73460:CDS | 35.0% | |
GGCATACCTGATATTGAAAA+GGG | - | chr1.4:83406102-83406121 | None:intergenic | 35.0% | |
GGTTATTCAGATGATACTTC+GGG | + | chr1.4:83406475-83406494 | MS.gene73460:CDS | 35.0% | |
TGTGGTAATCTTGCTTATGT+TGG | + | chr1.4:83406331-83406350 | MS.gene73460:CDS | 35.0% | |
TGTTAACAGAATTGAGAGGT+GGG | - | chr1.4:83406246-83406265 | None:intergenic | 35.0% | |
TTGGAAGAGATCAGCAAAAT+TGG | + | chr1.4:83406350-83406369 | MS.gene73460:CDS | 35.0% | |
TTGTTAACAGAATTGAGAGG+TGG | - | chr1.4:83406247-83406266 | None:intergenic | 35.0% | |
! | AACCCTAATGAGTCCTTTTA+AGG | + | chr1.4:83406201-83406220 | MS.gene73460:CDS | 35.0% |
!! | GTGTTCAAGTTTCTCACTTT+TGG | - | chr1.4:83406662-83406681 | None:intergenic | 35.0% |
AAGAGCTATGGATGGTAAGA+AGG | + | chr1.4:83406587-83406606 | MS.gene73460:CDS | 40.0% | |
AATCGTAAACTTTCGCTCTG+TGG | + | chr1.4:83406130-83406149 | MS.gene73460:CDS | 40.0% | |
ACTAGAAGAAGAGCTATGGA+TGG | + | chr1.4:83406579-83406598 | MS.gene73460:CDS | 40.0% | |
CGGCATACCTGATATTGAAA+AGG | - | chr1.4:83406103-83406122 | None:intergenic | 40.0% | |
CTACAAATGCAAACCAACCA+TGG | - | chr1.4:83406162-83406181 | None:intergenic | 40.0% | |
! | ATGGCACCCTTTTCAATATC+AGG | + | chr1.4:83406093-83406112 | MS.gene73460:CDS | 40.0% |
!! | CATTAGCATTGGTAGTGCAA+TGG | - | chr1.4:83406008-83406027 | None:intergenic | 40.0% |
AGAGAAATATGACGCCGACA+CGG | - | chr1.4:83406746-83406765 | None:intergenic | 45.0% | |
CGACACGGAAATTGAATCTC+CGG | - | chr1.4:83406731-83406750 | None:intergenic | 45.0% | |
CGGAGATTCAATTTCCGTGT+CGG | + | chr1.4:83406729-83406748 | MS.gene73460:CDS | 45.0% | |
AGAGGTGGGAGAGTAATGCA+AGG | - | chr1.4:83406232-83406251 | None:intergenic | 50.0% | |
!! | TTGGTGCTGTGTGCAAGACT+TGG | + | chr1.4:83405939-83405958 | MS.gene73460:CDS | 50.0% |
!! | TCTGTGGCTCTAGCCATGGT+TGG | + | chr1.4:83406146-83406165 | MS.gene73460:CDS | 55.0% |
!! | TCGCTCTGTGGCTCTAGCCA+TGG | + | chr1.4:83406142-83406161 | MS.gene73460:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 83405851 | 83406894 | 83405851 | ID=MS.gene73460 |
chr1.4 | mRNA | 83405851 | 83406894 | 83405851 | ID=MS.gene73460.t1;Parent=MS.gene73460 |
chr1.4 | exon | 83405851 | 83406894 | 83405851 | ID=MS.gene73460.t1.exon1;Parent=MS.gene73460.t1 |
chr1.4 | CDS | 83405851 | 83406894 | 83405851 | ID=cds.MS.gene73460.t1;Parent=MS.gene73460.t1 |
Gene Sequence |
Protein sequence |