AlfalfaGEDB | MS.gene42223

M. sativa cultivar XinJiangDaYe / MS.gene42223

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42223.t1	ABN08821.1	92.7	315	23	0	56	370	6	320	4.10E-165	590.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42223.t1	A2Q5C1	92.7	315	23	0	56	370	6	320	3.0e-165	590.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene42433	MS.gene42223	PPI
MS.gene42223	MS.gene85826	PPI
MS.gene42223	MS.gene023890	PPI
MS.gene43191	MS.gene42223	PPI
MS.gene42223	MS.gene52259	PPI
MS.gene42223	MS.gene97317	PPI
MS.gene29651	MS.gene42223	PPI
MS.gene46208	MS.gene42223	PPI
MS.gene023787	MS.gene42223	PPI
MS.gene42223	MS.gene49592	PPI
MS.gene032785	MS.gene42223	PPI
MS.gene27751	MS.gene42223	PPI
MS.gene52254	MS.gene42223	PPI
MS.gene42223	MS.gene27637	PPI
MS.gene49593	MS.gene42223	PPI
MS.gene066291	MS.gene42223	PPI
MS.gene42223	MS.gene95450	PPI
MS.gene066292	MS.gene42223	PPI
MS.gene023889	MS.gene42223	PPI
MS.gene029514	MS.gene42223	PPI
MS.gene022086	MS.gene42223	PPI
MS.gene27754	MS.gene42223	PPI
MS.gene023887	MS.gene42223	PPI
MS.gene27749	MS.gene42223	PPI
MS.gene52258	MS.gene42223	PPI
MS.gene76056	MS.gene42223	PPI
MS.gene85826	MS.gene42223	PPI
MS.gene42222	MS.gene42223	PPI
MS.gene99022	MS.gene42223	PPI
MS.gene52164	MS.gene42223	PPI
MS.gene023893	MS.gene42223	PPI
MS.gene27636	MS.gene42223	PPI
MS.gene27750	MS.gene42223	PPI
MS.gene52697	MS.gene42223	PPI
MS.gene42223	MS.gene27639	PPI
MS.gene27747	MS.gene42223	PPI
MS.gene42223	MS.gene22627	PPI
MS.gene85835	MS.gene42223	PPI
MS.gene031137	MS.gene42223	PPI
MS.gene52261	MS.gene42223	PPI
MS.gene27637	MS.gene42223	PPI
MS.gene42430	MS.gene42223	PPI
MS.gene023888	MS.gene42223	PPI
MS.gene73723	MS.gene42223	PPI
MS.gene066289	MS.gene42223	PPI
MS.gene023784	MS.gene42223	PPI
MS.gene42226	MS.gene42223	PPI
MS.gene22627	MS.gene42223	PPI
MS.gene99024	MS.gene42223	PPI
MS.gene52163	MS.gene42223	PPI
MS.gene42431	MS.gene42223	PPI
MS.gene42223	MS.gene42432	PPI
MS.gene94239	MS.gene42223	PPI
MS.gene42429	MS.gene42223	PPI
MS.gene99023	MS.gene42223	PPI
MS.gene42223	MS.gene42429	PPI
MS.gene035137	MS.gene42223	PPI
MS.gene42223	MS.gene52261	PPI
MS.gene42223	MS.gene031137	PPI
MS.gene52253	MS.gene42223	PPI
MS.gene42223	MS.gene031136	PPI
MS.gene44542	MS.gene42223	PPI
MS.gene023892	MS.gene42223	PPI
MS.gene52262	MS.gene42223	PPI
MS.gene27748	MS.gene42223	PPI
MS.gene73726	MS.gene42223	PPI
MS.gene42223	MS.gene52164	PPI
MS.gene42223	MS.gene023887	PPI
MS.gene52166	MS.gene42223	PPI
MS.gene027042	MS.gene42223	PPI
MS.gene52259	MS.gene42223	PPI
MS.gene035135	MS.gene42223	PPI
MS.gene42223	MS.gene76059	PPI
MS.gene52255	MS.gene42223	PPI
MS.gene52263	MS.gene42223	PPI
MS.gene42223	MS.gene85835	PPI
MS.gene94237	MS.gene42223	PPI
MS.gene73460	MS.gene42223	PPI
MS.gene27753	MS.gene42223	PPI
MS.gene76061	MS.gene42223	PPI
MS.gene49594	MS.gene42223	PPI
MS.gene023891	MS.gene42223	PPI
MS.gene42223	MS.gene27635	PPI
MS.gene42224	MS.gene42223	PPI
MS.gene86085	MS.gene42223	PPI
MS.gene42223	MS.gene52913	PPI
MS.gene42223	MS.gene27748	PPI
MS.gene032784	MS.gene42223	PPI
MS.gene42223	MS.gene42428	PPI
MS.gene29654	MS.gene42223	PPI
MS.gene023785	MS.gene42223	PPI
MS.gene032780	MS.gene42223	PPI
MS.gene041287	MS.gene42223	PPI
MS.gene27745	MS.gene42223	PPI
MS.gene42223	MS.gene52254	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42223.t1	MTR_7g076110	94.888	313	16	0	58	370	1	313	0.0	586
MS.gene42223.t1	MTR_7g077620	56.464	379	145	8	1	368	1	370	7.82e-134	388
MS.gene42223.t1	MTR_7g077650	53.886	386	148	12	1	370	1	372	2.70e-122	358
MS.gene42223.t1	MTR_7g077660	53.457	376	154	9	5	370	4	368	6.49e-119	349
MS.gene42223.t1	MTR_7g076100	60.504	238	90	4	134	370	66	300	1.76e-91	276
MS.gene42223.t1	MTR_7g076100	83.333	54	9	0	1	54	1	54	1.91e-24	102
MS.gene42223.t1	MTR_5g038260	39.175	388	203	14	6	370	6	383	6.58e-74	234
MS.gene42223.t1	MTR_1g108740	42.627	373	177	14	3	368	2	344	2.26e-73	232
MS.gene42223.t1	MTR_5g082770	44.737	304	142	9	6	302	4	288	6.59e-73	229
MS.gene42223.t1	MTR_5g038230	36.693	387	184	13	6	368	4	353	1.26e-66	214
MS.gene42223.t1	MTR_1g064570	38.592	412	193	16	5	370	3	400	1.04e-65	214
MS.gene42223.t1	MTR_1g016150	45.550	191	74	7	3	175	2	180	9.47e-42	146
MS.gene42223.t1	MTR_7g076130	56.349	126	53	2	163	287	24	148	6.86e-39	136
MS.gene42223.t1	MTR_5g082780	38.667	225	108	8	109	325	6	208	6.70e-33	123
MS.gene42223.t1	MTR_1g108750	44.000	150	53	4	6	154	4	123	1.91e-25	100

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 83 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAAACCAACCATTT+TGG	0.209572	7.3:-29661769	MS.gene42223:CDS
GACAGTGTTCCAGAAGATTT+AGG	0.219883	7.3:-29661287	MS.gene42223:CDS
TTCTCATAGTAGGTAAAATT+AGG	0.225887	7.3:+29661611	None:intergenic
ACCATCAAAACCATCAATTT+AGG	0.249142	7.3:-29662135	MS.gene42223:CDS
ACCTGTCATGGCTCTTCATT+TGG	0.288626	7.3:-29661995	MS.gene42223:CDS
ATCCCAAACCCTAAATCTTC+TGG	0.300792	7.3:+29661278	None:intergenic
GGAATAATACCATACTTAAA+AGG	0.315387	7.3:+29661926	None:intergenic
CGACGTTTACAAATTGAAAC+TGG	0.332871	7.3:-29661456	MS.gene42223:CDS
GTTCCAGAAGATTTAGGGTT+TGG	0.341176	7.3:-29661281	MS.gene42223:CDS
AATGAACAGACTTAAGAGTT+TGG	0.348149	7.3:-29661408	MS.gene42223:CDS
AGAAGAACTTCCTCTTAGTT+TGG	0.350191	7.3:-29662239	MS.gene42223:CDS
TTCCAGAAGATTTAGGGTTT+GGG	0.356926	7.3:-29661280	MS.gene42223:CDS
AGTACTCTTTGTGGCTTAGA+AGG	0.357548	7.3:+29662047	None:intergenic
GTCATGGCTCTTCATTTGGT+TGG	0.362670	7.3:-29661991	MS.gene42223:CDS
GTAACTATAGGAATCCAAAA+TGG	0.366794	7.3:+29661755	None:intergenic
TGTAATAAATTTGTAACTAT+AGG	0.375568	7.3:+29661743	None:intergenic
ACAGTGTTCCAGAAGATTTA+GGG	0.377757	7.3:-29661286	MS.gene42223:CDS
ACACTCCGGAGATATCTTAA+AGG	0.378694	7.3:+29661872	None:intergenic
AAGTTTGTCCAGCATAATCT+TGG	0.388756	7.3:+29661558	None:intergenic
AAAAGGATTGAGTAGAGTTA+TGG	0.390478	7.3:+29661943	None:intergenic
GGGCTCTACCTCAATTTCAA+TGG	0.397463	7.3:-29661184	MS.gene42223:CDS
CACATAGATCATCTTAGATT+CGG	0.408172	7.3:-29662196	MS.gene42223:CDS
ATGAACAGACTTAAGAGTTT+GGG	0.410853	7.3:-29661407	MS.gene42223:CDS
GGCTCTACCTCAATTTCAAT+GGG	0.416041	7.3:-29661183	MS.gene42223:CDS
TCTCATAGTAGGTAAAATTA+GGG	0.423599	7.3:+29661612	None:intergenic
GCTAGTTATCTTCTCATAGT+AGG	0.423741	7.3:+29661601	None:intergenic
TACTGCTCTTGGATTCGATT+GGG	0.430675	7.3:+29662083	None:intergenic
ATTGAATGGAGTACTCTTTG+TGG	0.430687	7.3:+29662038	None:intergenic
ACGACAGCAACATAATCATC+TGG	0.430984	7.3:+29661821	None:intergenic
TTCGAGAGGTGGCAGACTAA+TGG	0.431252	7.3:+29661901	None:intergenic
TTAGGGTCATTTGAGCGATC+AGG	0.435005	7.3:+29661629	None:intergenic
TCGAGAGGTGGCAGACTAAT+GGG	0.436341	7.3:+29661902	None:intergenic
GACATCGAAAAGCTTTCATA+TGG	0.441021	7.3:-29661482	MS.gene42223:CDS
GTATAGTATTCCTAAATTGA+TGG	0.447518	7.3:+29662125	None:intergenic
CGATGAGGAAGGTGGTAGAC+TGG	0.455468	7.3:-29662270	MS.gene42223:CDS
TATCTTGTGAAATCATTGAA+TGG	0.459383	7.3:-29661536	MS.gene42223:CDS
GATTGGGACGCTCATGATCA+TGG	0.463327	7.3:+29662099	None:intergenic
AATCAATCCCATTGAAATTG+AGG	0.474667	7.3:+29661176	None:intergenic
GCTGTCGTCATTTACAACTT+TGG	0.475418	7.3:-29661806	MS.gene42223:CDS
TAATCATCTGGGCTTATGAT+GGG	0.479866	7.3:+29661833	None:intergenic
ATACAAGGATCTACTGCTCT+TGG	0.483271	7.3:+29662072	None:intergenic
ATAATCATCTGGGCTTATGA+TGG	0.483695	7.3:+29661832	None:intergenic
CTACTGCTCTTGGATTCGAT+TGG	0.489995	7.3:+29662082	None:intergenic
TAGGGTCATTTGAGCGATCA+GGG	0.500420	7.3:+29661630	None:intergenic
AATCATTGAATGGAGACATA+TGG	0.507395	7.3:-29661526	MS.gene42223:CDS
AGTTTGTCCAGCATAATCTT+GGG	0.508944	7.3:+29661559	None:intergenic
TTGTCAAGAACCAAACTAAG+AGG	0.509205	7.3:+29662229	None:intergenic
TCGGTTTCGTGTGCAAGACT+TGG	0.511651	7.3:-29662177	MS.gene42223:CDS
AGGAGGAGTGTTGAACTTGA+AGG	0.513586	7.3:+29661655	None:intergenic
ACAAGAGGCAGACACAGAAA+AGG	0.516829	7.3:+29661349	None:intergenic
TGTGATGGATGAAAATTGAA+TGG	0.520449	7.3:+29662024	None:intergenic
CTATAGGAATCCAAAATGGT+TGG	0.542954	7.3:+29661759	None:intergenic
CACCACCTTTAAGATATCTC+CGG	0.544228	7.3:-29661877	MS.gene42223:CDS
GGGATCTATAATGTGAAGGA+TGG	0.545871	7.3:-29661260	MS.gene42223:CDS
ATTGGGACGCTCATGATCAT+GGG	0.549814	7.3:+29662100	None:intergenic
ACCAAATGAAGAGCCATGAC+AGG	0.552193	7.3:+29661994	None:intergenic
GCTAGAGCCCAAGATTATGC+TGG	0.553236	7.3:-29661566	MS.gene42223:CDS
TGCGTCTGCTCGAAGGAAAG+TGG	0.572553	7.3:+29661215	None:intergenic
GTGGCTTAGAAGGCTATACA+AGG	0.574812	7.3:+29662057	None:intergenic
ATCACATTTATAACCTGTCA+TGG	0.576549	7.3:-29662007	MS.gene42223:CDS
ATCTGGGCTTATGATGGGGT+CGG	0.585200	7.3:+29661838	None:intergenic
GATGAGGAAGGTGGTAGACT+GGG	0.589322	7.3:-29662269	MS.gene42223:CDS
CTTTCATTAGTCCACAGTAA+CGG	0.591490	7.3:-29661968	MS.gene42223:CDS
CGACAGCAACATAATCATCT+GGG	0.592571	7.3:+29661822	None:intergenic
TTTGAACTTGGAGAAACAAG+AGG	0.593858	7.3:+29661334	None:intergenic
ATGACAGGTTATAAATGTGA+TGG	0.594341	7.3:+29662009	None:intergenic
GGGTCATTTGAGCGATCAGG+GGG	0.608939	7.3:+29661632	None:intergenic
AAGTTTCTTAACGATGAGGA+AGG	0.609754	7.3:-29662281	None:intergenic
AAAGGTGGTGATTCGAGAGG+TGG	0.610801	7.3:+29661890	None:intergenic
GTTTGGGATCTATAATGTGA+AGG	0.626362	7.3:-29661264	MS.gene42223:CDS
TTTCTTAACGATGAGGAAGG+TGG	0.631528	7.3:-29662278	None:intergenic
AATCATCTGGGCTTATGATG+GGG	0.632274	7.3:+29661834	None:intergenic
AGGGTCATTTGAGCGATCAG+GGG	0.648257	7.3:+29661631	None:intergenic
CTCCGGAGATATCTTAAAGG+TGG	0.652726	7.3:+29661875	None:intergenic
CGGCAGACAATGTAACACTC+CGG	0.665324	7.3:+29661858	None:intergenic
GAGTTATGGAACCGTTACTG+TGG	0.666466	7.3:+29661957	None:intergenic
GGGACGCTCATGATCATGGG+TGG	0.671811	7.3:+29662103	None:intergenic
CTTAAAGGTGGTGATTCGAG+AGG	0.674686	7.3:+29661887	None:intergenic
ATTGAATGGAGACATATGGA+TGG	0.693585	7.3:-29661522	MS.gene42223:CDS
TTGAAACTGGACACCCAGAG+TGG	0.696035	7.3:-29661443	MS.gene42223:CDS
GGATTGAATAGTGTCTGAGT+GGG	0.704793	7.3:+29661676	None:intergenic
AGGATTGAATAGTGTCTGAG+TGG	0.717909	7.3:+29661675	None:intergenic
AGAGGTGGCAGACTAATGGG+AGG	0.718242	7.3:+29661905	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGTAATAAATTTGTAACTAT+AGG	+	chr7.3:29661706-29661725	None:intergenic	15.0%
!!!	AATGATGTTGTATTTTATAA+AGG	-	chr7.3:29661730-29661749	MS.gene42223:CDS	15.0%
!!!	ATTTTATTTATCGGATATTG+TGG	-	chr7.3:29662069-29662088	MS.gene42223:CDS	20.0%
!	GGAATAATACCATACTTAAA+AGG	+	chr7.3:29661523-29661542	None:intergenic	25.0%
!	GTATAGTATTCCTAAATTGA+TGG	+	chr7.3:29661324-29661343	None:intergenic	25.0%
!	TATCTTGTGAAATCATTGAA+TGG	-	chr7.3:29661910-29661929	MS.gene42223:CDS	25.0%
!	TCTCATAGTAGGTAAAATTA+GGG	+	chr7.3:29661837-29661856	None:intergenic	25.0%
!	TTCTCATAGTAGGTAAAATT+AGG	+	chr7.3:29661838-29661857	None:intergenic	25.0%
!!!	AACTGAATCTTTTTTGAACT+TGG	+	chr7.3:29662127-29662146	None:intergenic	25.0%
!!!	GGAGACAACATTTTATTTAT+CGG	-	chr7.3:29662060-29662079	MS.gene42223:CDS	25.0%
	AAAAGGATTGAGTAGAGTTA+TGG	+	chr7.3:29661506-29661525	None:intergenic	30.0%
	AATCATTGAATGGAGACATA+TGG	-	chr7.3:29661920-29661939	MS.gene42223:CDS	30.0%
	AATGAACAGACTTAAGAGTT+TGG	-	chr7.3:29662038-29662057	MS.gene42223:CDS	30.0%
	ACCATCAAAACCATCAATTT+AGG	-	chr7.3:29661311-29661330	MS.gene42223:CDS	30.0%
	ATCACATTTATAACCTGTCA+TGG	-	chr7.3:29661439-29661458	MS.gene42223:CDS	30.0%
	ATGAACAGACTTAAGAGTTT+GGG	-	chr7.3:29662039-29662058	MS.gene42223:CDS	30.0%
	ATGACAGGTTATAAATGTGA+TGG	+	chr7.3:29661440-29661459	None:intergenic	30.0%
	CACATAGATCATCTTAGATT+CGG	-	chr7.3:29661250-29661269	MS.gene42223:CDS	30.0%
	GTAACTATAGGAATCCAAAA+TGG	+	chr7.3:29661694-29661713	None:intergenic	30.0%
!	TTGCTCTTTTGAATGCAATA+CGG	+	chr7.3:29661666-29661685	None:intergenic	30.0%
!!	CTACTCAATCCTTTTAAGTA+TGG	-	chr7.3:29661511-29661530	MS.gene42223:CDS	30.0%
!!	TGTGATGGATGAAAATTGAA+TGG	+	chr7.3:29661425-29661444	None:intergenic	30.0%
!!!	TCCTAAATTGATGGTTTTGA+TGG	+	chr7.3:29661315-29661334	None:intergenic	30.0%
	AAGTTTGTCCAGCATAATCT+TGG	+	chr7.3:29661891-29661910	None:intergenic	35.0%
	ACAGTGTTCCAGAAGATTTA+GGG	-	chr7.3:29662160-29662179	MS.gene42223:CDS	35.0%
	AGAAGAACTTCCTCTTAGTT+TGG	-	chr7.3:29661207-29661226	MS.gene42223:CDS	35.0%
	AGTTTGTCCAGCATAATCTT+GGG	+	chr7.3:29661890-29661909	None:intergenic	35.0%
	ATAATCATCTGGGCTTATGA+TGG	+	chr7.3:29661617-29661636	None:intergenic	35.0%
	ATTGAATGGAGACATATGGA+TGG	-	chr7.3:29661924-29661943	MS.gene42223:CDS	35.0%
	CGACGTTTACAAATTGAAAC+TGG	-	chr7.3:29661990-29662009	MS.gene42223:CDS	35.0%
	CTATAGGAATCCAAAATGGT+TGG	+	chr7.3:29661690-29661709	None:intergenic	35.0%
	CTTTCATTAGTCCACAGTAA+CGG	-	chr7.3:29661478-29661497	MS.gene42223:CDS	35.0%
	GACATCGAAAAGCTTTCATA+TGG	-	chr7.3:29661964-29661983	MS.gene42223:CDS	35.0%
	GCTAGTTATCTTCTCATAGT+AGG	+	chr7.3:29661848-29661867	None:intergenic	35.0%
	TAATCATCTGGGCTTATGAT+GGG	+	chr7.3:29661616-29661635	None:intergenic	35.0%
	TTGTCAAGAACCAAACTAAG+AGG	+	chr7.3:29661220-29661239	None:intergenic	35.0%
	TTTGAACTTGGAGAAACAAG+AGG	+	chr7.3:29662115-29662134	None:intergenic	35.0%
!	AAAGAGCAAACCAACCATTT+TGG	-	chr7.3:29661677-29661696	MS.gene42223:CDS	35.0%
!	ATTGAATGGAGTACTCTTTG+TGG	+	chr7.3:29661411-29661430	None:intergenic	35.0%
!	GTTTGGGATCTATAATGTGA+AGG	-	chr7.3:29662182-29662201	MS.gene42223:CDS	35.0%
!	TTCCAGAAGATTTAGGGTTT+GGG	-	chr7.3:29662166-29662185	MS.gene42223:CDS	35.0%
!	TTGTACAAGTTTTCCACTCT+GGG	+	chr7.3:29662019-29662038	None:intergenic	35.0%
!	TTTGTACAAGTTTTCCACTC+TGG	+	chr7.3:29662020-29662039	None:intergenic	35.0%
	AAAAAATTGCGTCTGCTCGA+AGG	+	chr7.3:29662241-29662260	None:intergenic	40.0%
	AATCATCTGGGCTTATGATG+GGG	+	chr7.3:29661615-29661634	None:intergenic	40.0%
	ACACTCCGGAGATATCTTAA+AGG	+	chr7.3:29661577-29661596	None:intergenic	40.0%
	ACGACAGCAACATAATCATC+TGG	+	chr7.3:29661628-29661647	None:intergenic	40.0%
	AGGATTGAATAGTGTCTGAG+TGG	+	chr7.3:29661774-29661793	None:intergenic	40.0%
	AGTACTCTTTGTGGCTTAGA+AGG	+	chr7.3:29661402-29661421	None:intergenic	40.0%
	ATACAAGGATCTACTGCTCT+TGG	+	chr7.3:29661377-29661396	None:intergenic	40.0%
	ATCCCAAACCCTAAATCTTC+TGG	+	chr7.3:29662171-29662190	None:intergenic	40.0%
	CGACAGCAACATAATCATCT+GGG	+	chr7.3:29661627-29661646	None:intergenic	40.0%
	GACAGTGTTCCAGAAGATTT+AGG	-	chr7.3:29662159-29662178	MS.gene42223:CDS	40.0%
	GCTGTCGTCATTTACAACTT+TGG	-	chr7.3:29661640-29661659	MS.gene42223:CDS	40.0%
	GGATTGAATAGTGTCTGAGT+GGG	+	chr7.3:29661773-29661792	None:intergenic	40.0%
	GGCTCTACCTCAATTTCAAT+GGG	-	chr7.3:29662263-29662282	MS.gene42223:CDS	40.0%
	GGGATCTATAATGTGAAGGA+TGG	-	chr7.3:29662186-29662205	MS.gene42223:CDS	40.0%
	TACTGCTCTTGGATTCGATT+GGG	+	chr7.3:29661366-29661385	None:intergenic	40.0%
!	GTTCCAGAAGATTTAGGGTT+TGG	-	chr7.3:29662165-29662184	MS.gene42223:CDS	40.0%
!!	CACCACCTTTAAGATATCTC+CGG	-	chr7.3:29661569-29661588	MS.gene42223:CDS	40.0%
!!!	CGAGCAGACGCAATTTTTTT+GGG	-	chr7.3:29662242-29662261	MS.gene42223:CDS	40.0%
!!!	TCGAGCAGACGCAATTTTTT+TGG	-	chr7.3:29662241-29662260	MS.gene42223:CDS	40.0%
	ACAAGAGGCAGACACAGAAA+AGG	+	chr7.3:29662100-29662119	None:intergenic	45.0%
	ACCAAATGAAGAGCCATGAC+AGG	+	chr7.3:29661455-29661474	None:intergenic	45.0%
	ACCTGTCATGGCTCTTCATT+TGG	-	chr7.3:29661451-29661470	MS.gene42223:CDS	45.0%
	ATTGGGACGCTCATGATCAT+GGG	+	chr7.3:29661349-29661368	None:intergenic	45.0%
	CTACTGCTCTTGGATTCGAT+TGG	+	chr7.3:29661367-29661386	None:intergenic	45.0%
	CTCCGGAGATATCTTAAAGG+TGG	+	chr7.3:29661574-29661593	None:intergenic	45.0%
	CTTAAAGGTGGTGATTCGAG+AGG	+	chr7.3:29661562-29661581	None:intergenic	45.0%
	GAGTTATGGAACCGTTACTG+TGG	+	chr7.3:29661492-29661511	None:intergenic	45.0%
	GGGCTCTACCTCAATTTCAA+TGG	-	chr7.3:29662262-29662281	MS.gene42223:CDS	45.0%
	GTCATGGCTCTTCATTTGGT+TGG	-	chr7.3:29661455-29661474	MS.gene42223:CDS	45.0%
	GTGGCTTAGAAGGCTATACA+AGG	+	chr7.3:29661392-29661411	None:intergenic	45.0%
	TAGGGTCATTTGAGCGATCA+GGG	+	chr7.3:29661819-29661838	None:intergenic	45.0%
	TTAGGGTCATTTGAGCGATC+AGG	+	chr7.3:29661820-29661839	None:intergenic	45.0%
!!	AGGAGGAGTGTTGAACTTGA+AGG	+	chr7.3:29661794-29661813	None:intergenic	45.0%
	AAAGGTGGTGATTCGAGAGG+TGG	+	chr7.3:29661559-29661578	None:intergenic	50.0%
	AGGGTCATTTGAGCGATCAG+GGG	+	chr7.3:29661818-29661837	None:intergenic	50.0%
	CGGCAGACAATGTAACACTC+CGG	+	chr7.3:29661591-29661610	None:intergenic	50.0%
	GATTGGGACGCTCATGATCA+TGG	+	chr7.3:29661350-29661369	None:intergenic	50.0%
	GCTAGAGCCCAAGATTATGC+TGG	-	chr7.3:29661880-29661899	MS.gene42223:CDS	50.0%
	TCGAGAGGTGGCAGACTAAT+GGG	+	chr7.3:29661547-29661566	None:intergenic	50.0%
	TCGGTTTCGTGTGCAAGACT+TGG	-	chr7.3:29661269-29661288	MS.gene42223:CDS	50.0%
	TTCGAGAGGTGGCAGACTAA+TGG	+	chr7.3:29661548-29661567	None:intergenic	50.0%
	TTGAAACTGGACACCCAGAG+TGG	-	chr7.3:29662003-29662022	MS.gene42223:CDS	50.0%
!	ATCTGGGCTTATGATGGGGT+CGG	+	chr7.3:29661611-29661630	None:intergenic	50.0%
	AGAGGTGGCAGACTAATGGG+AGG	+	chr7.3:29661544-29661563	None:intergenic	55.0%
	GGGTCATTTGAGCGATCAGG+GGG	+	chr7.3:29661817-29661836	None:intergenic	55.0%
	TCATTTGAGCGATCAGGGGG+AGG	+	chr7.3:29661814-29661833	None:intergenic	55.0%
	TGCGTCTGCTCGAAGGAAAG+TGG	+	chr7.3:29662234-29662253	None:intergenic	55.0%
	GGGACGCTCATGATCATGGG+TGG	+	chr7.3:29661346-29661365	None:intergenic	60.0%
	TTTGAGCGATCAGGGGGAGG+AGG	+	chr7.3:29661811-29661830	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	29661178	29662290	29661178	ID=MS.gene42223
chr7.3	mRNA	29661178	29662290	29661178	ID=MS.gene42223.t1;Parent=MS.gene42223
chr7.3	exon	29661178	29662290	29661178	ID=MS.gene42223.t1.exon1;Parent=MS.gene42223.t1
chr7.3	CDS	29661178	29662290	29661178	ID=cds.MS.gene42223.t1;Parent=MS.gene42223.t1

Gene Sequence

>MS.gene42223

ATGAGGAAGGTGGTAGACTGGGCTAACTTAGAAGAACTTCCTCTTAGTTTGGTTCTTGACAAGTTAGAAGAACACATAGATCATCTTAGATTCGGTTTCGTGTGCAAGACTTGGCGATCAGTTGCAAAGCTTAACCATCAAAACCATCAATTTAGGAATACTATACCACCCATGATCATGAGCGTCCCAATCGAATCCAAGAGCAGTAGATCCTTGTATAGCCTTCTAAGCCACAAAGAGTACTCCATTCAATTTTCATCCATCACATTTATAACCTGTCATGGCTCTTCATTTGGTTGGCTTTCATTAGTCCACAGTAACGGTTCCATAACTCTACTCAATCCTTTTAAGTATGGTATTATTCCTCCCATTAGTCTGCCACCTCTCGAATCACCACCTTTAAGATATCTCCGGAGTGTTACATTGTCTGCCGACCCCATCATAAGCCCAGATGATTATGTTGCTGTCGTCATTTACAACTTTGGCCGTATTGCATTCAAAAGAGCAAACCAACCATTTTGGATTCCTATAGTTACAAATTTATTACATTTCAATGATGTTGTATTTTATAAAGGCATGTTAGTCGCTGAGACCCACTCAGACACTATTCAATCCTTCAAGTTCAACACTCCTCCTCCCCCTGATCGCTCAAATGACCCTAATTTTACCTACTATGAGAAGATAACTAGCACTGAATATCGTGCTAGAGCCCAAGATTATGCTGGACAAACTTATCTTGTGAAATCATTGAATGGAGACATATGGATGGTGAAAAGATATCTAATCGACATCGAAAAGCTTTCATATGGACTCGACGTTTACAAATTGAAACTGGACACCCAGAGTGGAAAACTTGTACAAATGAACAGACTTAAGAGTTTGGGAGACAACATTTTATTTATCGGATATTGTGGTAATTCCTTTTCTGTGTCTGCCTCTTGTTTCTCCAAGTTCAAAAAAGATTCAGTTTATTTTCTCTGTGACAGTGTTCCAGAAGATTTAGGGTTTGGGATCTATAATGTGAAGGATGGAAGCTATCAGATACAATCTTTACCACTTTCCTTCGAGCAGACGCAATTTTTTTGGGCTCTACCTCAATTTCAATGGGATTGA

Protein sequence

>MS.gene42223.t1

MRKVVDWANLEELPLSLVLDKLEEHIDHLRFGFVCKTWRSVAKLNHQNHQFRNTIPPMIMSVPIESKSSRSLYSLLSHKEYSIQFSSITFITCHGSSFGWLSLVHSNGSITLLNPFKYGIIPPISLPPLESPPLRYLRSVTLSADPIISPDDYVAVVIYNFGRIAFKRANQPFWIPIVTNLLHFNDVVFYKGMLVAETHSDTIQSFKFNTPPPPDRSNDPNFTYYEKITSTEYRARAQDYAGQTYLVKSLNGDIWMVKRYLIDIEKLSYGLDVYKLKLDTQSGKLVQMNRLKSLGDNILFIGYCGNSFSVSASCFSKFKKDSVYFLCDSVPEDLGFGIYNVKDGSYQIQSLPLSFEQTQFFWALPQFQWD