Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46208.t1 | RHN57146.1 | 83 | 229 | 21 | 2 | 76 | 286 | 26 | 254 | 4.40E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46208.t1 | G7K247 | 83.0 | 229 | 21 | 2 | 76 | 286 | 2 | 230 | 3.2e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46208.t1 | MTR_5g082780 | 82.969 | 229 | 21 | 2 | 76 | 286 | 2 | 230 | 3.09e-131 | 373 |
| MS.gene46208.t1 | MTR_5g038230 | 42.909 | 275 | 141 | 8 | 55 | 318 | 84 | 353 | 3.94e-58 | 191 |
| MS.gene46208.t1 | MTR_5g082770 | 53.886 | 193 | 62 | 3 | 76 | 243 | 100 | 290 | 7.64e-58 | 188 |
| MS.gene46208.t1 | MTR_1g064570 | 37.954 | 303 | 137 | 7 | 65 | 318 | 98 | 398 | 2.73e-56 | 187 |
| MS.gene46208.t1 | MTR_5g038260 | 40.000 | 300 | 140 | 9 | 55 | 318 | 86 | 381 | 2.64e-55 | 184 |
| MS.gene46208.t1 | MTR_1g108740 | 36.765 | 272 | 116 | 8 | 72 | 318 | 104 | 344 | 1.32e-41 | 147 |
| MS.gene46208.t1 | MTR_7g077660 | 36.000 | 300 | 128 | 13 | 56 | 318 | 94 | 366 | 1.65e-38 | 140 |
| MS.gene46208.t1 | MTR_7g077650 | 35.915 | 284 | 114 | 11 | 75 | 317 | 113 | 369 | 1.30e-37 | 137 |
| MS.gene46208.t1 | MTR_7g076100 | 39.095 | 243 | 100 | 8 | 110 | 318 | 70 | 298 | 4.97e-37 | 134 |
| MS.gene46208.t1 | MTR_7g077620 | 36.000 | 300 | 130 | 12 | 56 | 318 | 96 | 370 | 1.14e-35 | 133 |
| MS.gene46208.t1 | MTR_7g076110 | 34.643 | 280 | 122 | 11 | 80 | 318 | 52 | 311 | 5.16e-32 | 121 |
| MS.gene46208.t1 | MTR_1g016150 | 35.870 | 184 | 58 | 4 | 72 | 255 | 113 | 236 | 5.25e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATATCATTGGAAATT+TGG | 0.116569 | 5.3:+66886235 | None:intergenic |
| TAGCATTTGTTTAAACTTTC+CGG | 0.163534 | 5.3:+66886516 | None:intergenic |
| TAATCATTTGGTCTTGTTAT+AGG | 0.187600 | 5.3:+66886879 | None:intergenic |
| AGCAGCAGCCACCACCTTTC+TGG | 0.214961 | 5.3:-66886264 | MS.gene46208:CDS |
| TTTATGGATGTTATGTTCTA+TGG | 0.218295 | 5.3:-66886759 | MS.gene46208:CDS |
| GAGCTCGCTTCATTCCTTTA+TGG | 0.232283 | 5.3:-66886775 | MS.gene46208:CDS |
| CATTTCTTCCTCTTGTTCCT+TGG | 0.290859 | 5.3:+66887952 | None:intergenic |
| AATCATTTGGTCTTGTTATA+GGG | 0.294407 | 5.3:+66886880 | None:intergenic |
| AACAAGACCAAATGATTATA+TGG | 0.314220 | 5.3:-66886874 | MS.gene46208:CDS |
| ACTTATGGTCCATTTCATAT+AGG | 0.327197 | 5.3:-66886349 | MS.gene46208:CDS |
| CTTATGGTCCATTTCATATA+GGG | 0.341132 | 5.3:-66886348 | MS.gene46208:CDS |
| TCGAAGGTTGGAAGACTAAT+AGG | 0.348536 | 5.3:+66886957 | None:intergenic |
| AAGTTAGATTGTGTAACTTA+TGG | 0.369088 | 5.3:-66886364 | MS.gene46208:CDS |
| AGAAGGATGCAATATTGTTA+TGG | 0.378560 | 5.3:+66886992 | None:intergenic |
| GTATCAGCTTCATACTTCTC+TGG | 0.384518 | 5.3:-66886436 | MS.gene46208:CDS |
| GCCACAACCATATAATCATT+TGG | 0.389176 | 5.3:+66886867 | None:intergenic |
| GCAGCAGCCACCACCTTTCT+GGG | 0.398247 | 5.3:-66886263 | MS.gene46208:CDS |
| TTATATATCCCTATATGAAA+TGG | 0.424795 | 5.3:+66886340 | None:intergenic |
| TGTCTGCTAGGAATGTTGTT+GGG | 0.434055 | 5.3:-66887818 | MS.gene46208:CDS |
| CGAATTCAAACTTGTACACT+TGG | 0.434747 | 5.3:+66886548 | None:intergenic |
| TTATCTTGTGAAATCATTAG+AGG | 0.436221 | 5.3:-66886617 | MS.gene46208:CDS |
| ATAGGAGCAACATTCTTAGA+AGG | 0.444870 | 5.3:+66886975 | None:intergenic |
| ATAGAACATAACATCCATAA+AGG | 0.458967 | 5.3:+66886761 | None:intergenic |
| ATGCTAAAGCTTGAGAGTCT+TGG | 0.465110 | 5.3:-66886499 | MS.gene46208:CDS |
| TAAAAGCGGGCGAACCATGC+TGG | 0.470666 | 5.3:-66886809 | MS.gene46208:CDS |
| TGAAAGATTGCAGAGAAAGA+AGG | 0.479276 | 5.3:-66887901 | MS.gene46208:CDS |
| ACCAAATGATTATATGGTTG+TGG | 0.479866 | 5.3:-66886868 | MS.gene46208:CDS |
| AACCATGCTGGACTTATGTA+TGG | 0.481402 | 5.3:-66886797 | MS.gene46208:CDS |
| CTGTCTGCTAGGAATGTTGT+TGG | 0.495521 | 5.3:-66887819 | MS.gene46208:CDS |
| CCACACCAGCTTCCAACAAA+AGG | 0.497846 | 5.3:+66887850 | None:intergenic |
| GTCTGCTAGGAATGTTGTTG+GGG | 0.502359 | 5.3:-66887817 | MS.gene46208:CDS |
| CAAATTCAAAACCATGTTCG+TGG | 0.506854 | 5.3:-66889072 | None:intergenic |
| TTTATCTGAGGTCGGGTACA+AGG | 0.517119 | 5.3:-66886919 | MS.gene46208:CDS |
| TTTGAATTCGATGCTCATAC+CGG | 0.528075 | 5.3:-66886535 | MS.gene46208:CDS |
| GTGAAGATTATGATGATCAA+TGG | 0.528142 | 5.3:+66886303 | None:intergenic |
| AAGAAATGAACTTCAAGAAG+TGG | 0.528535 | 5.3:-66887937 | MS.gene46208:CDS |
| ATACAAGTTTATCTGAGGTC+GGG | 0.533775 | 5.3:-66886926 | MS.gene46208:CDS |
| GGGATATATAATGTAAGAGA+TGG | 0.535003 | 5.3:-66886328 | MS.gene46208:CDS |
| TATACAAGTTTATCTGAGGT+CGG | 0.543905 | 5.3:-66886927 | MS.gene46208:CDS |
| AGAAAGATTGCATTATGTGC+AGG | 0.545965 | 5.3:-66887786 | MS.gene46208:intron |
| ATGGATGTTATGTTCTATGG+AGG | 0.548376 | 5.3:-66886756 | MS.gene46208:CDS |
| AAATTTGGTAAAACCCAGAA+AGG | 0.548520 | 5.3:+66886250 | None:intergenic |
| TGGCAACAATACTGTCTGCT+AGG | 0.549035 | 5.3:-66887830 | MS.gene46208:CDS |
| CAAAGCTGCAGAGAAAAGAA+TGG | 0.568214 | 5.3:-66887875 | MS.gene46208:CDS |
| TATCTTGTGAAATCATTAGA+GGG | 0.568311 | 5.3:-66886616 | MS.gene46208:CDS |
| GGTAAAACCCAGAAAGGTGG+TGG | 0.590899 | 5.3:+66886256 | None:intergenic |
| TAACAGGACCAAGGAACAAG+AGG | 0.592613 | 5.3:-66887960 | MS.gene46208:intron |
| GTATATGATCGATCGAAGGT+TGG | 0.610922 | 5.3:+66886945 | None:intergenic |
| ATCATATACAAGTTTATCTG+AGG | 0.615631 | 5.3:-66886931 | MS.gene46208:CDS |
| TTTACTTTATAACAGGACCA+AGG | 0.628059 | 5.3:-66887969 | MS.gene46208:intron |
| CTCCATACATAAGTCCAGCA+TGG | 0.636983 | 5.3:+66886795 | None:intergenic |
| AATCATTAGAGGGAGACTTG+TGG | 0.640892 | 5.3:-66886606 | MS.gene46208:CDS |
| TTTGGTAAAACCCAGAAAGG+TGG | 0.643098 | 5.3:+66886253 | None:intergenic |
| ACTGAGAAAGTCCACGAACA+TGG | 0.644673 | 5.3:+66889061 | None:intergenic |
| TATGTTGCGAGTAAATATCA+CGG | 0.663367 | 5.3:-66886726 | MS.gene46208:intron |
| TCTGCTAGGAATGTTGTTGG+GGG | 0.665082 | 5.3:-66887816 | MS.gene46208:CDS |
| ACTTGTATATGATCGATCGA+AGG | 0.668705 | 5.3:+66886941 | None:intergenic |
| ATTAGAGGGAGACTTGTGGA+TGG | 0.690554 | 5.3:-66886602 | MS.gene46208:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATATGTAAATATATAAT+AGG | + | chr5.3:66887953-66887972 | None:intergenic | 10.0% |
| !!! | ATTGATTTTTTTTTTGTAAT+AGG | - | chr5.3:66886711-66886730 | MS.gene46208:intron | 10.0% |
| !! | ATTTACATATATCTTATAGT+TGG | - | chr5.3:66887960-66887979 | MS.gene46208:intron | 15.0% |
| !! | TTATTTAATTCTTGATAAGT+TGG | - | chr5.3:66888041-66888060 | MS.gene46208:intron | 15.0% |
| !!! | AGTTTATTTTTTTGTTACTA+TGG | - | chr5.3:66887670-66887689 | MS.gene46208:intron | 15.0% |
| !!! | GATAGTTTTAATAATTTAGA+GGG | - | chr5.3:66886506-66886525 | MS.gene46208:CDS | 15.0% |
| !!! | GGTATAATATCTTTTAATAT+TGG | - | chr5.3:66888597-66888616 | MS.gene46208:intron | 15.0% |
| !!! | TGAAAAGATTTTTTACTTTT+AGG | - | chr5.3:66888723-66888742 | MS.gene46208:intron | 15.0% |
| !!! | TGATAGTTTTAATAATTTAG+AGG | - | chr5.3:66886505-66886524 | MS.gene46208:CDS | 15.0% |
| !!! | TTAGTATAAGATTTCATTTT+TGG | - | chr5.3:66887606-66887625 | MS.gene46208:intron | 15.0% |
| !! | AGAGAGAAATATATGAAATA+AGG | + | chr5.3:66887144-66887163 | None:intergenic | 20.0% |
| !! | ATATATAAATTGCCAGATAT+TGG | - | chr5.3:66886289-66886308 | MS.gene46208:CDS | 20.0% |
| !! | ATGAGAATTTACTTTATAAC+AGG | - | chr5.3:66887326-66887345 | MS.gene46208:intron | 20.0% |
| !! | ATTGTTAAAAGTAGATTTGT+TGG | - | chr5.3:66886900-66886919 | MS.gene46208:CDS | 20.0% |
| !! | CAAATATGGTAATAAGAATT+TGG | + | chr5.3:66888243-66888262 | None:intergenic | 20.0% |
| !! | TAAGAATTTGGCAATTTAAA+TGG | + | chr5.3:66888231-66888250 | None:intergenic | 20.0% |
| !! | TTAAAAAGTGACACTTAAAA+AGG | + | chr5.3:66887031-66887050 | None:intergenic | 20.0% |
| !! | TTATATATCCCTATATGAAA+TGG | + | chr5.3:66888965-66888984 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTTCACAATTTG+AGG | - | chr5.3:66887752-66887771 | MS.gene46208:intron | 20.0% |
| !!! | AAACTTTTTTCACAATTTGA+GGG | - | chr5.3:66887753-66887772 | MS.gene46208:intron | 20.0% |
| !!! | AATAAGGTATTAAATGACTA+AGG | + | chr5.3:66887128-66887147 | None:intergenic | 20.0% |
| !!! | CTTTTAATATTGGTCATAAA+AGG | - | chr5.3:66888607-66888626 | MS.gene46208:intron | 20.0% |
| !!! | TATTCAATTCTCACATTTTA+TGG | - | chr5.3:66886548-66886567 | MS.gene46208:CDS | 20.0% |
| !!! | TTGTTAAAAGTAGATTTGTT+GGG | - | chr5.3:66886901-66886920 | MS.gene46208:CDS | 20.0% |
| !!! | TTTAAATGGATACATTTTCT+TGG | + | chr5.3:66888217-66888236 | None:intergenic | 20.0% |
| !!! | TTTGTAATAGGTTGTTTTTA+GGG | - | chr5.3:66886723-66886742 | MS.gene46208:intron | 20.0% |
| !!! | TTTTGTAATAGGTTGTTTTT+AGG | - | chr5.3:66886722-66886741 | MS.gene46208:intron | 20.0% |
| ! | AAATTGAAGAGCTTTCAAAA+TGG | + | chr5.3:66886806-66886825 | None:intergenic | 25.0% |
| ! | AACAAGACCAAATGATTATA+TGG | - | chr5.3:66888428-66888447 | MS.gene46208:intron | 25.0% |
| ! | AAGTTAGATTGTGTAACTTA+TGG | - | chr5.3:66888938-66888957 | MS.gene46208:intron | 25.0% |
| ! | ATAGAACATAACATCCATAA+AGG | + | chr5.3:66888544-66888563 | None:intergenic | 25.0% |
| ! | ATCATATACAAGTTTATCTG+AGG | - | chr5.3:66888371-66888390 | MS.gene46208:intron | 25.0% |
| ! | CAAATTATATAAGATACCAG+CGG | - | chr5.3:66887806-66887825 | MS.gene46208:CDS | 25.0% |
| ! | CTGGTATCTTATATAATTTG+CGG | + | chr5.3:66887806-66887825 | None:intergenic | 25.0% |
| ! | TAAATAACTAAGGGTAATGT+TGG | - | chr5.3:66887170-66887189 | MS.gene46208:intron | 25.0% |
| ! | TAATCCCACAAATTATTTGT+GGG | + | chr5.3:66887844-66887863 | None:intergenic | 25.0% |
| ! | TAATTTAGAGGGTTAAAGTT+TGG | - | chr5.3:66886517-66886536 | MS.gene46208:CDS | 25.0% |
| ! | TAGCATTTGTTTAAACTTTC+CGG | + | chr5.3:66888789-66888808 | None:intergenic | 25.0% |
| ! | TATCTTGTGAAATCATTAGA+GGG | - | chr5.3:66888686-66888705 | MS.gene46208:intron | 25.0% |
| ! | TCTCCACAATAAATAACTAA+GGG | - | chr5.3:66887161-66887180 | MS.gene46208:intron | 25.0% |
| ! | TGAAAATCAAGAATGATGAA+CGG | + | chr5.3:66886692-66886711 | None:intergenic | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+TGG | + | chr5.3:66887167-66887186 | None:intergenic | 25.0% |
| ! | TTATCTTGTGAAATCATTAG+AGG | - | chr5.3:66888685-66888704 | MS.gene46208:intron | 25.0% |
| ! | TTCAAAAGTGACACTTAAAA+AGG | - | chr5.3:66887257-66887276 | MS.gene46208:intron | 25.0% |
| ! | TTTATGGATGTTATGTTCTA+TGG | - | chr5.3:66888543-66888562 | MS.gene46208:intron | 25.0% |
| !! | ATAGTTGGTTCTTGTTATAT+TGG | - | chr5.3:66887975-66887994 | MS.gene46208:intron | 25.0% |
| !! | ATATTGGTTATGAGTATGAA+AGG | - | chr5.3:66886305-66886324 | MS.gene46208:CDS | 25.0% |
| !! | TAGTTAAAGTTTGAGTATTG+TGG | - | chr5.3:66887715-66887734 | MS.gene46208:intron | 25.0% |
| !! | TCTTGTTATATTGGTTAGAA+TGG | - | chr5.3:66887984-66888003 | MS.gene46208:intron | 25.0% |
| !! | TGGTATCTTATATAATTTGC+GGG | + | chr5.3:66887805-66887824 | None:intergenic | 25.0% |
| !! | TTTTACTCCAATCATGTAAT+GGG | - | chr5.3:66886352-66886371 | MS.gene46208:CDS | 25.0% |
| !! | TTTTTACTCCAATCATGTAA+TGG | - | chr5.3:66886351-66886370 | MS.gene46208:CDS | 25.0% |
| !!! | AACTTTTTTCACAATTTGAG+GGG | - | chr5.3:66887754-66887773 | MS.gene46208:intron | 25.0% |
| !!! | AATCATTTGGTCTTGTTATA+GGG | + | chr5.3:66888425-66888444 | None:intergenic | 25.0% |
| !!! | ATCTGTTATGTTGATTTGTT+GGG | - | chr5.3:66886937-66886956 | MS.gene46208:CDS | 25.0% |
| !!! | CAAATAGATCACGTTTTTTT+TGG | - | chr5.3:66888069-66888088 | MS.gene46208:intron | 25.0% |
| !!! | TAATCATTTGGTCTTGTTAT+AGG | + | chr5.3:66888426-66888445 | None:intergenic | 25.0% |
| !!! | TATCTGTTATGTTGATTTGT+TGG | - | chr5.3:66886936-66886955 | MS.gene46208:CDS | 25.0% |
| !!! | TCTGTTTGAAATGGATTTTT+TGG | - | chr5.3:66886653-66886672 | MS.gene46208:CDS | 25.0% |
| AAATTTGGTAAAACCCAGAA+AGG | + | chr5.3:66889055-66889074 | None:intergenic | 30.0% | |
| AAGAAATGAACTTCAAGAAG+TGG | - | chr5.3:66887365-66887384 | MS.gene46208:intron | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | - | chr5.3:66887262-66887281 | MS.gene46208:intron | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr5.3:66887281-66887262 | None:intergenic | 30.0% | |
| AATATTGCCCATTACATGAT+TGG | + | chr5.3:66886362-66886381 | None:intergenic | 30.0% | |
| AATCCCACAAATTATTTGTG+GGG | + | chr5.3:66887843-66887862 | None:intergenic | 30.0% | |
| ACAAACATCTTTCTGTTCTT+GGG | + | chr5.3:66888182-66888201 | None:intergenic | 30.0% | |
| ACCAAATGATTATATGGTTG+TGG | - | chr5.3:66888434-66888453 | MS.gene46208:intron | 30.0% | |
| ACTTATGGTCCATTTCATAT+AGG | - | chr5.3:66888953-66888972 | MS.gene46208:intron | 30.0% | |
| AGAAGGATGCAATATTGTTA+TGG | + | chr5.3:66888313-66888332 | None:intergenic | 30.0% | |
| ATAGGATAACAAATGCTCAA+GGG | - | chr5.3:66886459-66886478 | MS.gene46208:CDS | 30.0% | |
| CTAATCCCACAAATTATTTG+TGG | + | chr5.3:66887845-66887864 | None:intergenic | 30.0% | |
| CTATCAAACAATAATCTCTG+TGG | + | chr5.3:66886491-66886510 | None:intergenic | 30.0% | |
| CTCTCCACAATAAATAACTA+AGG | - | chr5.3:66887160-66887179 | MS.gene46208:intron | 30.0% | |
| CTTATGGTCCATTTCATATA+GGG | - | chr5.3:66888954-66888973 | MS.gene46208:intron | 30.0% | |
| GGGATATATAATGTAAGAGA+TGG | - | chr5.3:66888974-66888993 | MS.gene46208:intron | 30.0% | |
| GTAACATTTATTGAGTGTCT+TGG | + | chr5.3:66887067-66887086 | None:intergenic | 30.0% | |
| GTGAAGATTATGATGATCAA+TGG | + | chr5.3:66889002-66889021 | None:intergenic | 30.0% | |
| TAAATCTGAGTCCAAAGTAT+AGG | - | chr5.3:66886441-66886460 | MS.gene46208:CDS | 30.0% | |
| TACAAACATCTTTCTGTTCT+TGG | + | chr5.3:66888183-66888202 | None:intergenic | 30.0% | |
| TACTATGGCTATACTTTGAA+TGG | - | chr5.3:66887685-66887704 | MS.gene46208:intron | 30.0% | |
| TATAGGATAACAAATGCTCA+AGG | - | chr5.3:66886458-66886477 | MS.gene46208:CDS | 30.0% | |
| TATGTTGCGAGTAAATATCA+CGG | - | chr5.3:66888576-66888595 | MS.gene46208:intron | 30.0% | |
| TCAACGAATTGTTTCAAATC+TGG | + | chr5.3:66886874-66886893 | None:intergenic | 30.0% | |
| TCATACTCATAACCAATATC+TGG | + | chr5.3:66886304-66886323 | None:intergenic | 30.0% | |
| TGGTTCGAATTATAAAAGCT+TGG | - | chr5.3:66886757-66886776 | MS.gene46208:CDS | 30.0% | |
| TTTACTTTATAACAGGACCA+AGG | - | chr5.3:66887333-66887352 | MS.gene46208:intron | 30.0% | |
| TTTGAAAGTGACGGTTAAAT+AGG | - | chr5.3:66887221-66887240 | MS.gene46208:intron | 30.0% | |
| ! | AAATTATTTGTGGGGGTTTT+TGG | + | chr5.3:66887835-66887854 | None:intergenic | 30.0% |
| ! | ATTTGTGGGATTAGTATAAG+CGG | - | chr5.3:66887851-66887870 | MS.gene46208:CDS | 30.0% |
| ! | GGTATCTTATATAATTTGCG+GGG | + | chr5.3:66887804-66887823 | None:intergenic | 30.0% |
| ! | GTATCTTATATAATTTGCGG+GGG | + | chr5.3:66887803-66887822 | None:intergenic | 30.0% |
| ! | TATACAAGTTTATCTGAGGT+CGG | - | chr5.3:66888375-66888394 | MS.gene46208:intron | 30.0% |
| ! | TCTTATTACCATATTTGCTG+TGG | - | chr5.3:66888246-66888265 | MS.gene46208:intron | 30.0% |
| !! | ACGTTTCGCTTTTATAAAAG+CGG | - | chr5.3:66888479-66888498 | MS.gene46208:intron | 30.0% |
| !! | GCATTTGTTATCCTATACTT+TGG | + | chr5.3:66886455-66886474 | None:intergenic | 30.0% |
| !! | GGAGACAATGTTTTATTCTT+GGG | - | chr5.3:66888824-66888843 | MS.gene46208:intron | 30.0% |
| !! | TCATCTCTCTAAAGTTAGTA+AGG | - | chr5.3:66886266-66886285 | MS.gene46208:CDS | 30.0% |
| !! | TCTCACATTTTATGGTTTGT+TGG | - | chr5.3:66886556-66886575 | MS.gene46208:CDS | 30.0% |
| !! | TGGAGACAATGTTTTATTCT+TGG | - | chr5.3:66888823-66888842 | MS.gene46208:intron | 30.0% |
| !!! | ACTTTTTTCACAATTTGAGG+GGG | - | chr5.3:66887755-66887774 | MS.gene46208:intron | 30.0% |
| !!! | CTCACATTTTATGGTTTGTT+GGG | - | chr5.3:66886557-66886576 | MS.gene46208:CDS | 30.0% |
| AAACAATAATCTCTGTGGCA+AGG | + | chr5.3:66886486-66886505 | None:intergenic | 35.0% | |
| AAACCCCCACAAATAATTTG+TGG | - | chr5.3:66887836-66887855 | MS.gene46208:CDS | 35.0% | |
| AACAATAATCTCTGTGGCAA+GGG | + | chr5.3:66886485-66886504 | None:intergenic | 35.0% | |
| ACTTGTATATGATCGATCGA+AGG | + | chr5.3:66888364-66888383 | None:intergenic | 35.0% | |
| AGAAAGATTGCATTATGTGC+AGG | - | chr5.3:66887516-66887535 | MS.gene46208:intron | 35.0% | |
| AGCTTAACCATCAAAATCAG+CGG | - | chr5.3:66888124-66888143 | MS.gene46208:intron | 35.0% | |
| ATAGGAGCAACATTCTTAGA+AGG | + | chr5.3:66888330-66888349 | None:intergenic | 35.0% | |
| ATCCCACAAATTATTTGTGG+GGG | + | chr5.3:66887842-66887861 | None:intergenic | 35.0% | |
| ATGGATGTTATGTTCTATGG+AGG | - | chr5.3:66888546-66888565 | MS.gene46208:intron | 35.0% | |
| CCATTCACGATGTATGAAAA+AGG | + | chr5.3:66886971-66886990 | None:intergenic | 35.0% | |
| CGAATTCAAACTTGTACACT+TGG | + | chr5.3:66888757-66888776 | None:intergenic | 35.0% | |
| CTCAGATTTACGTATAAGCA+TGG | + | chr5.3:66886431-66886450 | None:intergenic | 35.0% | |
| GAGGGTTAAAGTTTGGAAAA+AGG | - | chr5.3:66886524-66886543 | MS.gene46208:CDS | 35.0% | |
| GATAACTCCAAATCCAATTC+AGG | - | chr5.3:66888629-66888648 | MS.gene46208:intron | 35.0% | |
| GCCACAACCATATAATCATT+TGG | + | chr5.3:66888438-66888457 | None:intergenic | 35.0% | |
| GGTTAGAATGGAACTAGATT+GGG | - | chr5.3:66887996-66888015 | MS.gene46208:intron | 35.0% | |
| GTTGTGAATACCTTATTGTG+TGG | - | chr5.3:66886779-66886798 | MS.gene46208:CDS | 35.0% | |
| TCAAAATGGACCACACAATA+AGG | + | chr5.3:66886792-66886811 | None:intergenic | 35.0% | |
| TGAAAGATTGCAGAGAAAGA+AGG | - | chr5.3:66887401-66887420 | MS.gene46208:intron | 35.0% | |
| TGGTTAGAATGGAACTAGAT+TGG | - | chr5.3:66887995-66888014 | MS.gene46208:intron | 35.0% | |
| TTTGAATTCGATGCTCATAC+CGG | - | chr5.3:66888767-66888786 | MS.gene46208:intron | 35.0% | |
| ! | AAAAGAATGGCACCTTTTGT+TGG | - | chr5.3:66887440-66887459 | MS.gene46208:intron | 35.0% |
| ! | AAAAGCATGAAAGCATAGAG+AGG | - | chr5.3:66886628-66886647 | MS.gene46208:CDS | 35.0% |
| ! | AACCCCCACAAATAATTTGT+GGG | - | chr5.3:66887837-66887856 | MS.gene46208:CDS | 35.0% |
| ! | AACCTCCACAAAATGTTTTG+CGG | + | chr5.3:66887892-66887911 | None:intergenic | 35.0% |
| ! | ATACAAGTTTATCTGAGGTC+GGG | - | chr5.3:66888376-66888395 | MS.gene46208:intron | 35.0% |
| ! | CTCTTCAATTTTATTCCCAC+AGG | - | chr5.3:66886815-66886834 | MS.gene46208:CDS | 35.0% |
| ! | GCATTGAACTTTGAAAGTGA+CGG | - | chr5.3:66887212-66887231 | MS.gene46208:intron | 35.0% |
| ! | GCTTTTCATGGAAGGTTTAA+AGG | - | chr5.3:66888662-66888681 | MS.gene46208:intron | 35.0% |
| ! | TTTGTGGGATTAGTATAAGC+GGG | - | chr5.3:66887852-66887871 | MS.gene46208:CDS | 35.0% |
| !! | CCTTTTTCATACATCGTGAA+TGG | - | chr5.3:66886968-66886987 | MS.gene46208:CDS | 35.0% |
| !! | CGTTTCGCTTTTATAAAAGC+GGG | - | chr5.3:66888480-66888499 | MS.gene46208:intron | 35.0% |
| !!! | ATAATTTGCGGGGGTTTTTT+AGG | + | chr5.3:66887794-66887813 | None:intergenic | 35.0% |
| !!! | TAGGTTGTTTTTAGGGCAAT+TGG | - | chr5.3:66886730-66886749 | MS.gene46208:CDS | 35.0% |
| !!! | TTTTTAGGGCAATTGGAAAC+TGG | - | chr5.3:66886737-66886756 | MS.gene46208:CDS | 35.0% |
| AACCATGCTGGACTTATGTA+TGG | - | chr5.3:66888505-66888524 | MS.gene46208:intron | 40.0% | |
| AATCATTAGAGGGAGACTTG+TGG | - | chr5.3:66888696-66888715 | MS.gene46208:intron | 40.0% | |
| AGAGAGGCTTCTGTTTGAAA+TGG | - | chr5.3:66886644-66886663 | MS.gene46208:CDS | 40.0% | |
| AGCTTGGAAAGAGAAACAAG+AGG | - | chr5.3:66887540-66887559 | MS.gene46208:intron | 40.0% | |
| ATGCTAAAGCTTGAGAGTCT+TGG | - | chr5.3:66888803-66888822 | MS.gene46208:intron | 40.0% | |
| CAAAGCTGCAGAGAAAAGAA+TGG | - | chr5.3:66887427-66887446 | MS.gene46208:intron | 40.0% | |
| CATTTCTTCCTCTTGTTCCT+TGG | + | chr5.3:66887353-66887372 | None:intergenic | 40.0% | |
| CTATTGTTGCAAGACAACCA+TGG | + | chr5.3:66888278-66888297 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | chr5.3:66887266-66887285 | MS.gene46208:intron | 40.0% | |
| GGAACTAGATTGGGCAAATT+TGG | - | chr5.3:66888005-66888024 | MS.gene46208:intron | 40.0% | |
| GGCTAAATCCACAGCAAATA+TGG | + | chr5.3:66888257-66888276 | None:intergenic | 40.0% | |
| GTATATGATCGATCGAAGGT+TGG | + | chr5.3:66888360-66888379 | None:intergenic | 40.0% | |
| GTATCAGCTTCATACTTCTC+TGG | - | chr5.3:66888866-66888885 | MS.gene46208:intron | 40.0% | |
| GTTCTTGGGATCATTAGCAT+GGG | + | chr5.3:66888168-66888187 | None:intergenic | 40.0% | |
| TAATCGCCAATTCTTGCACA+CGG | + | chr5.3:66888097-66888116 | None:intergenic | 40.0% | |
| TATCATTGATCCTTGCCTGT+GGG | + | chr5.3:66886833-66886852 | None:intergenic | 40.0% | |
| TCCAAATCCAATTCAGGACA+TGG | - | chr5.3:66888635-66888654 | MS.gene46208:intron | 40.0% | |
| TCGAAGGTTGGAAGACTAAT+AGG | + | chr5.3:66888348-66888367 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | - | chr5.3:66887265-66887284 | MS.gene46208:intron | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr5.3:66887284-66887265 | None:intergenic | 40.0% | |
| TGTCTGCTAGGAATGTTGTT+GGG | - | chr5.3:66887484-66887503 | MS.gene46208:intron | 40.0% | |
| TGTTCTTGGGATCATTAGCA+TGG | + | chr5.3:66888169-66888188 | None:intergenic | 40.0% | |
| TTTGGTAAAACCCAGAAAGG+TGG | + | chr5.3:66889052-66889071 | None:intergenic | 40.0% | |
| ! | AAGTCCCGCAAAACATTTTG+TGG | - | chr5.3:66887884-66887903 | MS.gene46208:CDS | 40.0% |
| ! | ACCTCCACAAAATGTTTTGC+GGG | + | chr5.3:66887891-66887910 | None:intergenic | 40.0% |
| ! | ATGGCATAGCTTTTCATGGA+AGG | - | chr5.3:66888654-66888673 | MS.gene46208:intron | 40.0% |
| ! | CAATTTTATTCCCACAGGCA+AGG | - | chr5.3:66886820-66886839 | MS.gene46208:CDS | 40.0% |
| ! | CATTCTTTTCTCTGCAGCTT+TGG | + | chr5.3:66887429-66887448 | None:intergenic | 40.0% |
| ! | TTGTGGGATTAGTATAAGCG+GGG | - | chr5.3:66887853-66887872 | MS.gene46208:CDS | 40.0% |
| !! | ATTTGCTGTGGATTTAGCCA+TGG | - | chr5.3:66888258-66888277 | MS.gene46208:intron | 40.0% |
| !! | CAAGAGGAACATCTAGTTCT+AGG | - | chr5.3:66887556-66887575 | MS.gene46208:intron | 40.0% |
| !!! | TTCTGAACCGCTGATTTTGA+TGG | + | chr5.3:66888134-66888153 | None:intergenic | 40.0% |
| AGCTATGCCATGTCCTGAAT+TGG | + | chr5.3:66888645-66888664 | None:intergenic | 45.0% | |
| ATTAGAGGGAGACTTGTGGA+TGG | - | chr5.3:66888700-66888719 | MS.gene46208:intron | 45.0% | |
| CTATCATTGATCCTTGCCTG+TGG | + | chr5.3:66886834-66886853 | None:intergenic | 45.0% | |
| CTCCATACATAAGTCCAGCA+TGG | + | chr5.3:66888510-66888529 | None:intergenic | 45.0% | |
| CTGTCTGCTAGGAATGTTGT+TGG | - | chr5.3:66887483-66887502 | MS.gene46208:intron | 45.0% | |
| GAGCTCGCTTCATTCCTTTA+TGG | - | chr5.3:66888527-66888546 | MS.gene46208:intron | 45.0% | |
| GCCATGTCCTGAATTGGATT+TGG | + | chr5.3:66888639-66888658 | None:intergenic | 45.0% | |
| GTCTGCTAGGAATGTTGTTG+GGG | - | chr5.3:66887485-66887504 | MS.gene46208:intron | 45.0% | |
| TAACAGGACCAAGGAACAAG+AGG | - | chr5.3:66887342-66887361 | MS.gene46208:intron | 45.0% | |
| TCTGCTAGGAATGTTGTTGG+GGG | - | chr5.3:66887486-66887505 | MS.gene46208:intron | 45.0% | |
| TGCATTATGTGCAGGTAGCT+TGG | - | chr5.3:66887524-66887543 | MS.gene46208:intron | 45.0% | |
| TGGCAACAATACTGTCTGCT+AGG | - | chr5.3:66887472-66887491 | MS.gene46208:intron | 45.0% | |
| ! | GGACATGGCATAGCTTTTCA+TGG | - | chr5.3:66888650-66888669 | MS.gene46208:intron | 45.0% |
| ! | TCCCGCAAAACATTTTGTGG+AGG | - | chr5.3:66887887-66887906 | MS.gene46208:CDS | 45.0% |
| ! | TGTGGGATTAGTATAAGCGG+GGG | - | chr5.3:66887854-66887873 | MS.gene46208:CDS | 45.0% |
| ! | TTTATCTGAGGTCGGGTACA+AGG | - | chr5.3:66888383-66888402 | MS.gene46208:intron | 45.0% |
| !!! | ATTTGCGGGGGTTTTTTAGG+CGG | + | chr5.3:66887791-66887810 | None:intergenic | 45.0% |
| !! | ATATATGTAAATATATAATA+GGG | + | chr5.3:66887952-66887971 | None:intergenic | 5.0% |
| CAAAAAACGCGCCTGGATTG+CGG | + | chr5.3:66887923-66887942 | None:intergenic | 50.0% | |
| CCACACCAGCTTCCAACAAA+AGG | + | chr5.3:66887455-66887474 | None:intergenic | 50.0% | |
| GACACTACAAAAAACGCGCC+TGG | + | chr5.3:66887930-66887949 | None:intergenic | 50.0% | |
| GGTAAAACCCAGAAAGGTGG+TGG | + | chr5.3:66889049-66889068 | None:intergenic | 50.0% | |
| GTTAAAAACCGCCGCAATCC+AGG | - | chr5.3:66887909-66887928 | MS.gene46208:CDS | 50.0% | |
| ! | CCTTTTGTTGGAAGCTGGTG+TGG | - | chr5.3:66887452-66887471 | MS.gene46208:intron | 50.0% |
| ! | TGGCACCTTTTGTTGGAAGC+TGG | - | chr5.3:66887447-66887466 | MS.gene46208:intron | 50.0% |
| !! | TTGGTGCCGTGTGCAAGAAT+TGG | - | chr5.3:66888088-66888107 | MS.gene46208:intron | 50.0% |
| TAAAAGCGGGCGAACCATGC+TGG | - | chr5.3:66888493-66888512 | MS.gene46208:intron | 55.0% | |
| AAAACGCGCCTGGATTGCGG+CGG | + | chr5.3:66887920-66887939 | None:intergenic | 60.0% | |
| AGCAGCAGCCACCACCTTTC+TGG | - | chr5.3:66889038-66889057 | MS.gene46208:intron | 60.0% | |
| GCAGCAGCCACCACCTTTCT+GGG | - | chr5.3:66889039-66889058 | MS.gene46208:intron | 60.0% | |
| !!! | TGCGGGGGTTTTTTAGGCGG+AGG | + | chr5.3:66887788-66887807 | None:intergenic | 60.0% |
| !!! | TGGGGGTTTTTGGTGACCGC+TGG | + | chr5.3:66887825-66887844 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66886243 | 66889081 | 66886243 | ID=MS.gene46208 |
| chr5.3 | mRNA | 66886243 | 66889081 | 66886243 | ID=MS.gene46208.t1;Parent=MS.gene46208 |
| chr5.3 | exon | 66889046 | 66889081 | 66889046 | ID=MS.gene46208.t1.exon1;Parent=MS.gene46208.t1 |
| chr5.3 | CDS | 66889046 | 66889081 | 66889046 | ID=cds.MS.gene46208.t1;Parent=MS.gene46208.t1 |
| chr5.3 | exon | 66887787 | 66887976 | 66887787 | ID=MS.gene46208.t1.exon2;Parent=MS.gene46208.t1 |
| chr5.3 | CDS | 66887787 | 66887976 | 66887787 | ID=cds.MS.gene46208.t1;Parent=MS.gene46208.t1 |
| chr5.3 | exon | 66886727 | 66887026 | 66886727 | ID=MS.gene46208.t1.exon3;Parent=MS.gene46208.t1 |
| chr5.3 | CDS | 66886727 | 66887026 | 66886727 | ID=cds.MS.gene46208.t1;Parent=MS.gene46208.t1 |
| chr5.3 | exon | 66886243 | 66886673 | 66886243 | ID=MS.gene46208.t1.exon4;Parent=MS.gene46208.t1 |
| chr5.3 | CDS | 66886243 | 66886673 | 66886243 | ID=cds.MS.gene46208.t1;Parent=MS.gene46208.t1 |
| Gene Sequence |
| Protein sequence |
