Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99022.t1 | XP_003613576.1 | 67.3 | 297 | 28 | 2 | 1 | 229 | 88 | 383 | 6.90E-110 | 406.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99022.t1 | G7K9R3 | 67.3 | 297 | 28 | 2 | 1 | 229 | 88 | 383 | 4.9e-110 | 406.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99022.t1 | MTR_5g038260 | 86.885 | 183 | 23 | 1 | 1 | 183 | 88 | 269 | 1.21e-110 | 323 |
MS.gene99022.t1 | MTR_5g038260 | 52.083 | 96 | 41 | 2 | 135 | 229 | 292 | 383 | 2.22e-25 | 102 |
MS.gene99022.t1 | MTR_5g038230 | 55.957 | 277 | 67 | 6 | 1 | 229 | 86 | 355 | 2.50e-91 | 273 |
MS.gene99022.t1 | MTR_1g064570 | 47.594 | 187 | 82 | 4 | 3 | 176 | 88 | 271 | 1.60e-44 | 154 |
MS.gene99022.t1 | MTR_1g064570 | 35.227 | 88 | 52 | 2 | 143 | 229 | 317 | 400 | 9.71e-12 | 63.9 |
MS.gene99022.t1 | MTR_6g023955 | 43.889 | 180 | 63 | 3 | 50 | 229 | 69 | 210 | 4.97e-42 | 142 |
MS.gene99022.t1 | MTR_1g108740 | 42.268 | 194 | 96 | 5 | 8 | 200 | 96 | 274 | 3.40e-38 | 135 |
MS.gene99022.t1 | MTR_5g082770 | 48.837 | 172 | 73 | 7 | 7 | 176 | 88 | 246 | 3.94e-36 | 129 |
MS.gene99022.t1 | MTR_7g077620 | 43.820 | 178 | 77 | 6 | 4 | 173 | 100 | 262 | 2.14e-32 | 121 |
MS.gene99022.t1 | MTR_5g082780 | 44.099 | 161 | 76 | 6 | 18 | 176 | 1 | 149 | 5.98e-32 | 117 |
MS.gene99022.t1 | MTR_7g077660 | 41.758 | 182 | 82 | 7 | 4 | 176 | 98 | 264 | 8.39e-31 | 117 |
MS.gene99022.t1 | MTR_7g077650 | 40.860 | 186 | 78 | 7 | 5 | 175 | 100 | 268 | 5.34e-30 | 114 |
MS.gene99022.t1 | MTR_7g076110 | 37.853 | 177 | 94 | 5 | 7 | 175 | 36 | 204 | 1.10e-22 | 94.4 |
MS.gene99022.t1 | MTR_7g076100 | 41.538 | 130 | 65 | 5 | 57 | 179 | 71 | 196 | 7.93e-16 | 75.1 |
MS.gene99022.t1 | MTR_1g016150 | 44.828 | 87 | 35 | 3 | 8 | 93 | 105 | 179 | 7.71e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 61 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATCATTTGGACTTGTTAT+AGG | 0.239358 | 5.4:+27533294 | None:intergenic |
TCTAATCAATTCCACTTAAA+AGG | 0.241393 | 5.4:+27532265 | None:intergenic |
TATGACAAATTCTTCGTCTA+TGG | 0.256095 | 5.4:+27533434 | None:intergenic |
ATACAAGACACTGACCATTT+TGG | 0.281472 | 5.4:-27533198 | MS.gene99022:CDS |
TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.4:-27533227 | MS.gene99022:CDS |
CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5.4:+27533060 | None:intergenic |
TCAATCATTGGCAAACTAAT+AGG | 0.312864 | 5.4:+27533381 | None:intergenic |
ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.4:+27533399 | None:intergenic |
AACGTAAAACATGGAAGTTT+TGG | 0.351299 | 5.4:-27532349 | MS.gene99022:CDS |
AACCTTCTGCACGTTGAATT+CGG | 0.376294 | 5.4:+27533332 | None:intergenic |
CCTTTGAAGTGAGGTTTGTA+AGG | 0.384751 | 5.4:+27532316 | None:intergenic |
TTGTTATTCAAGTGACCCTT+CGG | 0.395653 | 5.4:-27533100 | MS.gene99022:CDS |
TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.4:-27533013 | MS.gene99022:CDS |
CCTTACATTCTACAATGGTT+TGG | 0.424991 | 5.4:-27533166 | MS.gene99022:CDS |
GCGGCAACCACATAATCATT+TGG | 0.428360 | 5.4:+27533282 | None:intergenic |
AAAAGGTGGCACAACCCATA+TGG | 0.429129 | 5.4:+27532282 | None:intergenic |
AAGGTATGGCACCTCCCATA+TGG | 0.431844 | 5.4:-27532297 | MS.gene99022:CDS |
TTCAAGTGACCCTTCGGGTA+TGG | 0.433703 | 5.4:-27533094 | MS.gene99022:CDS |
TAAGGTCGATGAAACCAAAA+TGG | 0.438084 | 5.4:+27533184 | None:intergenic |
TGGTGAGAAGGTTTATAAGT+AGG | 0.439223 | 5.4:-27532975 | MS.gene99022:CDS |
TGTTATTCAAGTGACCCTTC+GGG | 0.440936 | 5.4:-27533099 | MS.gene99022:CDS |
ACGAAGAATTTGTCATAACT+TGG | 0.446129 | 5.4:-27533428 | MS.gene99022:CDS |
GGTGAGAAGGTTTATAAGTA+GGG | 0.448283 | 5.4:-27532974 | MS.gene99022:CDS |
GAATGATAAACATCAATCAT+TGG | 0.457445 | 5.4:+27533369 | None:intergenic |
CCAAACCATTGTAGAATGTA+AGG | 0.460636 | 5.4:+27533166 | None:intergenic |
GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.4:-27532987 | MS.gene99022:CDS |
TCAAAAGGACCTCTAGGATA+AGG | 0.471573 | 5.4:+27532385 | None:intergenic |
TGTCTTGCTTTCATAAAAGC+AGG | 0.495002 | 5.4:-27533240 | MS.gene99022:CDS |
TTATATACTCCCATATCAAA+AGG | 0.508310 | 5.4:+27532370 | None:intergenic |
CCTTACAAACCTCACTTCAA+AGG | 0.511620 | 5.4:-27532316 | MS.gene99022:CDS |
AACAAGTCCAAATGATTATG+TGG | 0.518480 | 5.4:-27533289 | MS.gene99022:CDS |
CAAACCTCACTTCAAAGGTA+TGG | 0.525919 | 5.4:-27532311 | MS.gene99022:CDS |
CTTTGAAGTGAGGTTTGTAA+GGG | 0.530606 | 5.4:+27532317 | None:intergenic |
AGGTATGGCACCTCCCATAT+GGG | 0.532239 | 5.4:-27532296 | MS.gene99022:CDS |
AAAGGTGGCACAACCCATAT+GGG | 0.532965 | 5.4:+27532283 | None:intergenic |
GCTGTGGCTCAAGTCATGGC+TGG | 0.535182 | 5.4:-27533464 | MS.gene99022:CDS |
GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.4:+27533018 | None:intergenic |
TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.4:-27533009 | MS.gene99022:CDS |
TATGAAAGCAAGACAACCAC+GGG | 0.552361 | 5.4:+27533248 | None:intergenic |
CCCATATCAAAAGGACCTCT+AGG | 0.554037 | 5.4:+27532379 | None:intergenic |
CGAAGAATTTGTCATAACTT+GGG | 0.557211 | 5.4:-27533427 | MS.gene99022:CDS |
TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.4:-27533010 | MS.gene99022:CDS |
TACCGAATTCAACGTGCAGA+AGG | 0.576742 | 5.4:-27533334 | MS.gene99022:CDS |
GCAGAAGGTTACTTTGTCAG+TGG | 0.595895 | 5.4:-27533319 | MS.gene99022:CDS |
ATCGACCTTACATTCTACAA+TGG | 0.600500 | 5.4:-27533171 | MS.gene99022:CDS |
TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5.4:-27533146 | MS.gene99022:CDS |
GGTGCCATACCTTTGAAGTG+AGG | 0.604787 | 5.4:+27532307 | None:intergenic |
AGGGTCAGAATGTGCAACAA+AGG | 0.604874 | 5.4:-27532955 | MS.gene99022:intron |
AATCAATTCCACTTAAAAGG+TGG | 0.605003 | 5.4:+27532268 | None:intergenic |
AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.4:-27532999 | MS.gene99022:CDS |
GCCGCAATTTATACTACCCG+TGG | 0.609604 | 5.4:-27533264 | MS.gene99022:CDS |
CAAAACAACAAGAGATGCTG+TGG | 0.609992 | 5.4:-27533480 | MS.gene99022:CDS |
TAACCAGTTCCTTATCCTAG+AGG | 0.612126 | 5.4:-27532394 | MS.gene99022:intron |
AGATGCTGTGGCTCAAGTCA+TGG | 0.616921 | 5.4:-27533468 | MS.gene99022:CDS |
ATTCTCTGTTCCATACCCGA+AGG | 0.619525 | 5.4:+27533084 | None:intergenic |
GGAGTATATAACGTAAAACA+TGG | 0.631117 | 5.4:-27532358 | MS.gene99022:CDS |
TTCTCTGTTCCATACCCGAA+GGG | 0.635821 | 5.4:+27533085 | None:intergenic |
TTATGAAAGCAAGACAACCA+CGG | 0.657735 | 5.4:+27533247 | None:intergenic |
ACCACGGGTAGTATAAATTG+CGG | 0.678682 | 5.4:+27533263 | None:intergenic |
ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.4:-27532995 | MS.gene99022:CDS |
GGTGGCACAACCCATATGGG+AGG | 0.690978 | 5.4:+27532286 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTTATTTAGTGAAATCAT+TGG | - | chr5.4:27532740-27532759 | MS.gene99022:intron | 20.0% |
!! | TTCTTTACAAGTATTTAAGT+TGG | - | chr5.4:27533176-27533195 | MS.gene99022:CDS | 20.0% |
! | AAATTGTGTACCTTTGAATT+AGG | + | chr5.4:27533078-27533097 | None:intergenic | 25.0% |
! | AATTTGTATCTAGTGATCTA+TGG | - | chr5.4:27533130-27533149 | MS.gene99022:CDS | 25.0% |
! | ATATGATGAATTTGAGTGAT+TGG | - | chr5.4:27532846-27532865 | MS.gene99022:intron | 25.0% |
! | ATGACGTTTAAATAGCTAAA+CGG | + | chr5.4:27532944-27532963 | None:intergenic | 25.0% |
! | CTTCTTTGTAACAAAACATT+TGG | + | chr5.4:27532696-27532715 | None:intergenic | 25.0% |
! | GAATGATAAACATCAATCAT+TGG | + | chr5.4:27532387-27532406 | None:intergenic | 25.0% |
! | GATTTCACTAAATAAGTAAG+TGG | + | chr5.4:27532738-27532757 | None:intergenic | 25.0% |
! | TATTTAGTGAAATCATTGGA+GGG | - | chr5.4:27532744-27532763 | MS.gene99022:intron | 25.0% |
! | TTATATACTCCCATATCAAA+AGG | + | chr5.4:27533386-27533405 | None:intergenic | 25.0% |
! | TTATTTAGTGAAATCATTGG+AGG | - | chr5.4:27532743-27532762 | MS.gene99022:intron | 25.0% |
! | TTTCTCAAGTTATCTACAAA+AGG | - | chr5.4:27533308-27533327 | MS.gene99022:CDS | 25.0% |
!!! | AATTTTTTTCCAACGAGTTA+CGG | + | chr5.4:27532619-27532638 | None:intergenic | 25.0% |
!!! | ACAAGTATTTAAGTTGGAAT+TGG | - | chr5.4:27533182-27533201 | MS.gene99022:CDS | 25.0% |
!!! | TAATCATTTGGACTTGTTAT+AGG | + | chr5.4:27532462-27532481 | None:intergenic | 25.0% |
AACAAGTCCAAATGATTATG+TGG | - | chr5.4:27532464-27532483 | MS.gene99022:intron | 30.0% | |
ACGAAGAATTTGTCATAACT+TGG | - | chr5.4:27532325-27532344 | MS.gene99022:CDS | 30.0% | |
AGAATAATTAACCGTCTGAT+GGG | + | chr5.4:27532967-27532986 | None:intergenic | 30.0% | |
ATTGGACTATTGTTACTGAA+TGG | - | chr5.4:27532864-27532883 | MS.gene99022:intron | 30.0% | |
CGAAGAATTTGTCATAACTT+GGG | - | chr5.4:27532326-27532345 | MS.gene99022:CDS | 30.0% | |
GGAGTATATAACGTAAAACA+TGG | - | chr5.4:27533395-27533414 | MS.gene99022:CDS | 30.0% | |
TATGACAAATTCTTCGTCTA+TGG | + | chr5.4:27532322-27532341 | None:intergenic | 30.0% | |
TCAATCATTGGCAAACTAAT+AGG | + | chr5.4:27532375-27532394 | None:intergenic | 30.0% | |
TTGTCAAAAGTTGAGAGTTT+GGG | - | chr5.4:27533231-27533250 | MS.gene99022:CDS | 30.0% | |
TTTGTCAAAAGTTGAGAGTT+TGG | - | chr5.4:27533230-27533249 | MS.gene99022:CDS | 30.0% | |
! | AACGTAAAACATGGAAGTTT+TGG | - | chr5.4:27533404-27533423 | MS.gene99022:CDS | 30.0% |
AAGTTGGAATTGGATGACAA+AGG | - | chr5.4:27533192-27533211 | MS.gene99022:CDS | 35.0% | |
ATAGGAGCAACATCCTTAAA+AGG | + | chr5.4:27532357-27532376 | None:intergenic | 35.0% | |
ATCGACCTTACATTCTACAA+TGG | - | chr5.4:27532582-27532601 | MS.gene99022:intron | 35.0% | |
ATTTAGATAAGCCCAATGAG+AGG | - | chr5.4:27532905-27532924 | MS.gene99022:intron | 35.0% | |
CAGAATAATTAACCGTCTGA+TGG | + | chr5.4:27532968-27532987 | None:intergenic | 35.0% | |
CCAAACCATTGTAGAATGTA+AGG | + | chr5.4:27532590-27532609 | None:intergenic | 35.0% | |
CCTTACATTCTACAATGGTT+TGG | - | chr5.4:27532587-27532606 | MS.gene99022:intron | 35.0% | |
CCTTCATCAACCTAATTCAA+AGG | - | chr5.4:27533065-27533084 | MS.gene99022:CDS | 35.0% | |
GGTGAGAAGGTTTATAAGTA+GGG | - | chr5.4:27532779-27532798 | MS.gene99022:intron | 35.0% | |
TAAGGTCGATGAAACCAAAA+TGG | + | chr5.4:27532572-27532591 | None:intergenic | 35.0% | |
TCTCATTGGGCTTATCTAAA+TGG | + | chr5.4:27532906-27532925 | None:intergenic | 35.0% | |
TGGTGAGAAGGTTTATAAGT+AGG | - | chr5.4:27532778-27532797 | MS.gene99022:intron | 35.0% | |
TGTCTTGCTTTCATAAAAGC+AGG | - | chr5.4:27532513-27532532 | MS.gene99022:intron | 35.0% | |
TTAAATAGCTAAACGGCTGA+GGG | + | chr5.4:27532937-27532956 | None:intergenic | 35.0% | |
TTATGAAAGCAAGACAACCA+CGG | + | chr5.4:27532509-27532528 | None:intergenic | 35.0% | |
TTTAAATAGCTAAACGGCTG+AGG | + | chr5.4:27532938-27532957 | None:intergenic | 35.0% | |
! | AACTTGGGTGAATCCTTTTA+AGG | - | chr5.4:27532341-27532360 | MS.gene99022:CDS | 35.0% |
! | ATACAAGACACTGACCATTT+TGG | - | chr5.4:27532555-27532574 | MS.gene99022:intron | 35.0% |
! | TAAAAGCAGGACAAGAGTTT+TGG | - | chr5.4:27532526-27532545 | MS.gene99022:intron | 35.0% |
! | TTGTTATTCAAGTGACCCTT+CGG | - | chr5.4:27532653-27532672 | MS.gene99022:intron | 35.0% |
!! | AATGTCTTATTTGTGGGTGA+CGG | - | chr5.4:27533258-27533277 | MS.gene99022:CDS | 35.0% |
!! | CCTTTGAATTAGGTTGATGA+AGG | + | chr5.4:27533068-27533087 | None:intergenic | 35.0% |
!! | CTTTGAAGTGAGGTTTGTAA+GGG | + | chr5.4:27533439-27533458 | None:intergenic | 35.0% |
!! | GGAGACAATGTCTTATTTGT+GGG | - | chr5.4:27533252-27533271 | MS.gene99022:CDS | 35.0% |
AACCTTCTGCACGTTGAATT+CGG | + | chr5.4:27532424-27532443 | None:intergenic | 40.0% | |
AATTGGATGACAAAGGTGAG+AGG | - | chr5.4:27533199-27533218 | MS.gene99022:CDS | 40.0% | |
ACCACGGGTAGTATAAATTG+CGG | + | chr5.4:27532493-27532512 | None:intergenic | 40.0% | |
ATAGTTGTTGGCGTTGTCTA+CGG | - | chr5.4:27533038-27533057 | MS.gene99022:CDS | 40.0% | |
CAAAACAACAAGAGATGCTG+TGG | - | chr5.4:27532273-27532292 | MS.gene99022:CDS | 40.0% | |
CAAACCTCACTTCAAAGGTA+TGG | - | chr5.4:27533442-27533461 | MS.gene99022:CDS | 40.0% | |
CCTTACAAACCTCACTTCAA+AGG | - | chr5.4:27533437-27533456 | MS.gene99022:CDS | 40.0% | |
TAACCAGTTCCTTATCCTAG+AGG | - | chr5.4:27533359-27533378 | MS.gene99022:CDS | 40.0% | |
TATGAAAGCAAGACAACCAC+GGG | + | chr5.4:27532508-27532527 | None:intergenic | 40.0% | |
TGTGAAAACCTAGAGCTAGA+CGG | - | chr5.4:27532993-27533012 | MS.gene99022:CDS | 40.0% | |
TGTTATTCAAGTGACCCTTC+GGG | - | chr5.4:27532654-27532673 | MS.gene99022:intron | 40.0% | |
TTAAACGTCATCCCATCAGA+CGG | - | chr5.4:27532953-27532972 | MS.gene99022:intron | 40.0% | |
! | CCTAGAGGTCCTTTTGATAT+GGG | - | chr5.4:27533374-27533393 | MS.gene99022:CDS | 40.0% |
! | TCCTAGAGGTCCTTTTGATA+TGG | - | chr5.4:27533373-27533392 | MS.gene99022:CDS | 40.0% |
!! | CCTTTGAAGTGAGGTTTGTA+AGG | + | chr5.4:27533440-27533459 | None:intergenic | 40.0% |
!! | GGGAGACAATGTCTTATTTG+TGG | - | chr5.4:27533251-27533270 | MS.gene99022:CDS | 40.0% |
!! | TCAAAAGGACCTCTAGGATA+AGG | + | chr5.4:27533371-27533390 | None:intergenic | 40.0% |
AAAAGGTGGCACAACCCATA+TGG | + | chr5.4:27533474-27533493 | None:intergenic | 45.0% | |
AAAGGTGGCACAACCCATAT+GGG | + | chr5.4:27533473-27533492 | None:intergenic | 45.0% | |
AACGCCAACAACTATGAGAG+GGG | + | chr5.4:27533033-27533052 | None:intergenic | 45.0% | |
AATCATTGGAGGGAGAGTTG+TGG | - | chr5.4:27532754-27532773 | MS.gene99022:intron | 45.0% | |
ACAACGCCAACAACTATGAG+AGG | + | chr5.4:27533035-27533054 | None:intergenic | 45.0% | |
AGGGTCAGAATGTGCAACAA+AGG | - | chr5.4:27532798-27532817 | MS.gene99022:intron | 45.0% | |
ATTCTCTGTTCCATACCCGA+AGG | + | chr5.4:27532672-27532691 | None:intergenic | 45.0% | |
CAACGCCAACAACTATGAGA+GGG | + | chr5.4:27533034-27533053 | None:intergenic | 45.0% | |
CCCATATCAAAAGGACCTCT+AGG | + | chr5.4:27533377-27533396 | None:intergenic | 45.0% | |
CTAAATGGTCCAACCCATCA+CGG | + | chr5.4:27532891-27532910 | None:intergenic | 45.0% | |
GCGGCAACCACATAATCATT+TGG | + | chr5.4:27532474-27532493 | None:intergenic | 45.0% | |
GTTACCCCTCTCATAGTTGT+TGG | - | chr5.4:27533026-27533045 | MS.gene99022:CDS | 45.0% | |
GTTACTGAATGGACCGTGAT+GGG | - | chr5.4:27532875-27532894 | MS.gene99022:intron | 45.0% | |
TACCGAATTCAACGTGCAGA+AGG | - | chr5.4:27532419-27532438 | MS.gene99022:intron | 45.0% | |
TGTTACTGAATGGACCGTGA+TGG | - | chr5.4:27532874-27532893 | MS.gene99022:intron | 45.0% | |
TTCTCTGTTCCATACCCGAA+GGG | + | chr5.4:27532671-27532690 | None:intergenic | 45.0% | |
! | GCAGAAGGTTACTTTGTCAG+TGG | - | chr5.4:27532434-27532453 | MS.gene99022:intron | 45.0% |
AAGGTATGGCACCTCCCATA+TGG | - | chr5.4:27533456-27533475 | MS.gene99022:CDS | 50.0% | |
ACCTAGAGCTAGACGGAATG+AGG | - | chr5.4:27533000-27533019 | MS.gene99022:CDS | 50.0% | |
AGATGCTGTGGCTCAAGTCA+TGG | - | chr5.4:27532285-27532304 | MS.gene99022:CDS | 50.0% | |
AGGTATGGCACCTCCCATAT+GGG | - | chr5.4:27533457-27533476 | MS.gene99022:CDS | 50.0% | |
ATTGGAGGGAGAGTTGTGGA+TGG | - | chr5.4:27532758-27532777 | MS.gene99022:intron | 50.0% | |
CCTAGAGCTAGACGGAATGA+GGG | - | chr5.4:27533001-27533020 | MS.gene99022:CDS | 50.0% | |
CGGCGACTCAATGTCTGTAT+CGG | - | chr5.4:27533278-27533297 | MS.gene99022:CDS | 50.0% | |
GAGAGTTGTGGATGGTGAGA+AGG | - | chr5.4:27532766-27532785 | MS.gene99022:intron | 50.0% | |
GCCGCAATTTATACTACCCG+TGG | - | chr5.4:27532489-27532508 | MS.gene99022:intron | 50.0% | |
TGGTGTATGCCGTAACTCGT+TGG | - | chr5.4:27532607-27532626 | MS.gene99022:intron | 50.0% | |
TTCAAGTGACCCTTCGGGTA+TGG | - | chr5.4:27532659-27532678 | MS.gene99022:intron | 50.0% | |
! | GGGTTGTGCCACCTTTTAAG+TGG | - | chr5.4:27533477-27533496 | MS.gene99022:CDS | 50.0% |
!! | GGACCTCTAGGATAAGGAAC+TGG | + | chr5.4:27533365-27533384 | None:intergenic | 50.0% |
!! | GGTGCCATACCTTTGAAGTG+AGG | + | chr5.4:27533449-27533468 | None:intergenic | 50.0% |
ATAGCTAAACGGCTGAGGGC+AGG | + | chr5.4:27532933-27532952 | None:intergenic | 55.0% | |
TAGCTAAACGGCTGAGGGCA+GGG | + | chr5.4:27532932-27532951 | None:intergenic | 55.0% | |
!! | CCCTCATTCCGTCTAGCTCT+AGG | + | chr5.4:27533004-27533023 | None:intergenic | 55.0% |
!! | CTGAATGGACCGTGATGGGT+TGG | - | chr5.4:27532879-27532898 | MS.gene99022:intron | 55.0% |
GAGGGCAGGGACCTCTCATT+GGG | + | chr5.4:27532919-27532938 | None:intergenic | 60.0% | |
GCTGTGGCTCAAGTCATGGC+TGG | - | chr5.4:27532289-27532308 | MS.gene99022:CDS | 60.0% | |
GGTGGCACAACCCATATGGG+AGG | + | chr5.4:27533470-27533489 | None:intergenic | 60.0% | |
TGAGGGCAGGGACCTCTCAT+TGG | + | chr5.4:27532920-27532939 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 27532270 | 27533505 | 27532270 | ID=MS.gene99022 |
chr5.4 | mRNA | 27532270 | 27533505 | 27532270 | ID=MS.gene99022.t1;Parent=MS.gene99022 |
chr5.4 | exon | 27532956 | 27533505 | 27532956 | ID=MS.gene99022.t1.exon1;Parent=MS.gene99022.t1 |
chr5.4 | CDS | 27532956 | 27533505 | 27532956 | ID=cds.MS.gene99022.t1;Parent=MS.gene99022.t1 |
chr5.4 | exon | 27532270 | 27532409 | 27532270 | ID=MS.gene99022.t1.exon2;Parent=MS.gene99022.t1 |
chr5.4 | CDS | 27532270 | 27532409 | 27532270 | ID=cds.MS.gene99022.t1;Parent=MS.gene99022.t1 |
Gene Sequence |
Protein sequence |