Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032785.t1 | XP_003613576.1 | 74.4 | 367 | 42 | 2 | 1 | 316 | 3 | 368 | 2.10E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032785.t1 | G7K9R3 | 74.4 | 367 | 42 | 2 | 1 | 316 | 3 | 368 | 1.5e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032785.t1 | MTR_5g038260 | 74.387 | 367 | 42 | 2 | 1 | 316 | 3 | 368 | 0.0 | 550 |
| MS.gene032785.t1 | MTR_5g038230 | 67.030 | 367 | 43 | 4 | 1 | 316 | 1 | 340 | 1.05e-169 | 477 |
| MS.gene032785.t1 | MTR_1g064570 | 40.561 | 392 | 155 | 9 | 1 | 319 | 1 | 387 | 6.29e-84 | 260 |
| MS.gene032785.t1 | MTR_5g082770 | 49.477 | 287 | 123 | 11 | 1 | 284 | 1 | 268 | 1.64e-73 | 230 |
| MS.gene032785.t1 | MTR_1g108740 | 45.139 | 288 | 132 | 8 | 2 | 284 | 3 | 269 | 2.54e-69 | 221 |
| MS.gene032785.t1 | MTR_7g077620 | 43.434 | 297 | 130 | 10 | 4 | 281 | 5 | 282 | 8.45e-60 | 197 |
| MS.gene032785.t1 | MTR_7g077660 | 41.806 | 299 | 135 | 11 | 4 | 284 | 5 | 282 | 1.55e-55 | 186 |
| MS.gene032785.t1 | MTR_7g077650 | 40.391 | 307 | 127 | 13 | 4 | 281 | 5 | 284 | 3.85e-53 | 180 |
| MS.gene032785.t1 | MTR_1g016150 | 46.032 | 189 | 76 | 8 | 3 | 178 | 4 | 179 | 3.01e-43 | 150 |
| MS.gene032785.t1 | MTR_5g082780 | 41.436 | 181 | 85 | 7 | 103 | 281 | 1 | 162 | 2.55e-31 | 118 |
| MS.gene032785.t1 | MTR_6g023955 | 40.331 | 181 | 53 | 3 | 135 | 315 | 69 | 194 | 2.95e-31 | 117 |
| MS.gene032785.t1 | MTR_1g108750 | 43.478 | 161 | 51 | 4 | 1 | 158 | 1 | 124 | 1.95e-26 | 102 |
| MS.gene032785.t1 | MTR_7g076110 | 33.796 | 216 | 124 | 6 | 77 | 284 | 21 | 225 | 7.08e-24 | 100 |
| MS.gene032785.t1 | MTR_7g076100 | 40.940 | 149 | 74 | 6 | 140 | 281 | 69 | 210 | 3.20e-18 | 84.3 |
| MS.gene032785.t1 | MTR_7g076100 | 60.000 | 50 | 19 | 1 | 4 | 53 | 6 | 54 | 3.37e-11 | 63.9 |
| MS.gene032785.t1 | MTR_3g114970 | 28.095 | 210 | 131 | 7 | 1 | 203 | 1 | 197 | 7.41e-13 | 69.3 |
| MS.gene032785.t1 | MTR_3g114990 | 25.306 | 245 | 136 | 8 | 1 | 213 | 20 | 249 | 9.32e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTACATTGCTCCTAAAT+TGG | 0.222050 | 5.2:+28432532 | None:intergenic |
| TAATCAGTCAGAATGATTTC+TGG | 0.223684 | 5.2:-28431505 | MS.gene032785:intron |
| TAATCATTTGGACTTGTTAT+AGG | 0.239358 | 5.2:+28432231 | None:intergenic |
| ATGCAAGACACTGACCATTT+TGG | 0.251355 | 5.2:-28432135 | MS.gene032785:CDS |
| TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.2:-28432164 | MS.gene032785:CDS |
| GATGATAAATTCTTCGTCTA+TGG | 0.282940 | 5.2:+28432371 | None:intergenic |
| GGTGGTCGTGTTGATGATTA+AGG | 0.291776 | 5.2:+28432553 | None:intergenic |
| CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5.2:+28431997 | None:intergenic |
| ATCAACACGACCACCAATTT+AGG | 0.305762 | 5.2:-28432545 | MS.gene032785:CDS |
| TTAAGAATTGTCAATTCTAA+TGG | 0.308529 | 5.2:+28432435 | None:intergenic |
| TCAATCATTGGCAAACTAAT+AGG | 0.312864 | 5.2:+28432318 | None:intergenic |
| ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.2:+28432336 | None:intergenic |
| AATGGATACACTCTATTTGC+AGG | 0.334507 | 5.2:+28432453 | None:intergenic |
| TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.2:-28432614 | MS.gene032785:CDS |
| ACAAGTACTTAAGTTGGAAT+TGG | 0.345955 | 5.2:-28431857 | MS.gene032785:CDS |
| AACGTAAAACATGGAAGTTT+TGG | 0.351299 | 5.2:-28431629 | MS.gene032785:CDS |
| CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5.2:-28432609 | MS.gene032785:CDS |
| GCATAACCATGGAGCGAGAT+TGG | 0.373158 | 5.2:-28432683 | None:intergenic |
| CCTTTGAAGTGAGGTTTGTA+AGG | 0.384751 | 5.2:+28431596 | None:intergenic |
| TTGTTATTCAAGTGACCCTT+CGG | 0.395653 | 5.2:-28432037 | MS.gene032785:CDS |
| CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5.2:+28432609 | None:intergenic |
| CCTGCCCAACCTACACAAAC+TGG | 0.397814 | 5.2:+28431386 | None:intergenic |
| TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.2:-28431950 | MS.gene032785:CDS |
| CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.2:-28432103 | MS.gene032785:CDS |
| GCTGCAACCACATAATCATT+TGG | 0.420868 | 5.2:+28432219 | None:intergenic |
| TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.2:+28432121 | None:intergenic |
| TTCTTTACAAGTACTTAAGT+TGG | 0.428096 | 5.2:-28431863 | MS.gene032785:CDS |
| TTCAAGTGACCCTTCGGGTA+TGG | 0.433703 | 5.2:-28432031 | MS.gene032785:CDS |
| TGGTGAGAAGGTTTATAAGT+AGG | 0.439223 | 5.2:-28431912 | MS.gene032785:CDS |
| TGTTATTCAAGTGACCCTTC+GGG | 0.440936 | 5.2:-28432036 | MS.gene032785:CDS |
| GGTGAGAAGGTTTATAAGTA+GGG | 0.448283 | 5.2:-28431911 | MS.gene032785:CDS |
| CATAACCATGGAGCGAGATT+GGG | 0.451858 | 5.2:-28432682 | None:intergenic |
| TCAAAAGGACCTCTAGGATA+AGG | 0.452966 | 5.2:+28431665 | None:intergenic |
| GAATGATAAACATCAATCAT+TGG | 0.457445 | 5.2:+28432306 | None:intergenic |
| ACGAAGAATTTATCATCAGT+TGG | 0.458286 | 5.2:-28432365 | MS.gene032785:CDS |
| GGTTGCGAGCCAGCCATGAC+TGG | 0.461953 | 5.2:+28432392 | None:intergenic |
| GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.2:-28431924 | MS.gene032785:CDS |
| GTTGTGGCTCCAGTCATGGC+TGG | 0.471336 | 5.2:-28432401 | MS.gene032785:CDS |
| CGAAGAATTTATCATCAGTT+GGG | 0.479167 | 5.2:-28432364 | MS.gene032785:CDS |
| GGACCTCTAGGATAAGGAAT+AGG | 0.482897 | 5.2:+28431671 | None:intergenic |
| TTATATATTCCCATATCAAA+AGG | 0.509410 | 5.2:+28431650 | None:intergenic |
| CCTTACAAACCTCACTTCAA+AGG | 0.511620 | 5.2:-28431596 | MS.gene032785:intron |
| CTTGCTGCTACGGTGATGAC+AGG | 0.516632 | 5.2:-28431438 | MS.gene032785:CDS |
| AACAAGTCCAAATGATTATG+TGG | 0.518480 | 5.2:-28432226 | MS.gene032785:CDS |
| GCAGTAGCTTCAGCTATTCG+CGG | 0.530158 | 5.2:-28431480 | MS.gene032785:CDS |
| CTTTGAAGTGAGGTTTGTAA+GGG | 0.530606 | 5.2:+28431597 | None:intergenic |
| GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.2:+28431955 | None:intergenic |
| CTTAACAACAAGAGATGTTG+TGG | 0.538941 | 5.2:-28432417 | MS.gene032785:CDS |
| TTACATTGCTCCTAAATTGG+TGG | 0.539694 | 5.2:+28432535 | None:intergenic |
| TGGAACAATCTCCAAGCAGC+AGG | 0.539978 | 5.2:+28431406 | None:intergenic |
| GAGATTGTTCCAGTTTGTGT+AGG | 0.541327 | 5.2:-28431395 | None:intergenic |
| TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.2:-28432177 | MS.gene032785:CDS |
| TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.2:-28431946 | MS.gene032785:CDS |
| GTTTGCCCAATCTCGCTCCA+TGG | 0.556567 | 5.2:+28432677 | None:intergenic |
| TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5.2:+28432185 | None:intergenic |
| CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.2:+28431659 | None:intergenic |
| TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.2:-28431947 | MS.gene032785:CDS |
| TTGGTTCTGTCTGCAAACAT+TGG | 0.564939 | 5.2:-28432590 | MS.gene032785:CDS |
| TCTGAAGGGATCATTAGCAT+AGG | 0.577323 | 5.2:+28432510 | None:intergenic |
| ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.2:-28432108 | MS.gene032785:CDS |
| TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5.2:+28432184 | None:intergenic |
| TGGTGTATGCAGTAACTCGT+TGG | 0.594516 | 5.2:-28432083 | MS.gene032785:CDS |
| TAGCAGCAAGCAAAACGCGC+AGG | 0.594703 | 5.2:+28431451 | None:intergenic |
| GGTGCCATACCTTTGAAGTG+AGG | 0.604787 | 5.2:+28431587 | None:intergenic |
| AGGGTCAGAATGTGCAACAA+AGG | 0.604874 | 5.2:-28431892 | MS.gene032785:CDS |
| GCATAAAGTTACTTTGTCAG+TGG | 0.605801 | 5.2:-28432256 | MS.gene032785:CDS |
| AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.2:-28431936 | MS.gene032785:CDS |
| AGATGTTGTGGCTCCAGTCA+TGG | 0.606449 | 5.2:-28432405 | MS.gene032785:CDS |
| GGAATATATAACGTAAAACA+TGG | 0.617818 | 5.2:-28431638 | MS.gene032785:CDS |
| ATTCTCTGTTCCATACCCGA+AGG | 0.619525 | 5.2:+28432021 | None:intergenic |
| GAACCTATTCCTTATCCTAG+AGG | 0.634791 | 5.2:-28431674 | MS.gene032785:CDS |
| TTCTCTGTTCCATACCCGAA+GGG | 0.635821 | 5.2:+28432022 | None:intergenic |
| GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5.2:-28432201 | MS.gene032785:CDS |
| ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.2:-28431932 | MS.gene032785:CDS |
| AAGTTGGAATTGGATGACAA+AGG | 0.697370 | 5.2:-28431847 | MS.gene032785:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATTTAGTGAAATCAT+TGG | - | chr5.2:28432121-28432140 | MS.gene032785:CDS | 20.0% |
| !! | TTAAGAATTGTCAATTCTAA+TGG | + | chr5.2:28431639-28431658 | None:intergenic | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | + | chr5.2:28432424-28432443 | None:intergenic | 20.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | + | chr5.2:28432077-28432096 | None:intergenic | 25.0% |
| ! | GAATGATAAACATCAATCAT+TGG | + | chr5.2:28431768-28431787 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | + | chr5.2:28432119-28432138 | None:intergenic | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | - | chr5.2:28432433-28432452 | MS.gene032785:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | - | chr5.2:28432125-28432144 | MS.gene032785:CDS | 25.0% |
| ! | TCTAATCAATTCCACTTAAA+AGG | + | chr5.2:28432529-28432548 | None:intergenic | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | - | chr5.2:28432124-28432143 | MS.gene032785:CDS | 25.0% |
| ! | TTCTTTACAAGTACTTAAGT+TGG | - | chr5.2:28432208-28432227 | MS.gene032785:CDS | 25.0% |
| ! | TTTCTCAAGTTATCTACAAA+AGG | - | chr5.2:28432339-28432358 | MS.gene032785:CDS | 25.0% |
| !!! | TAATCATTTGGACTTGTTAT+AGG | + | chr5.2:28431843-28431862 | None:intergenic | 25.0% |
| AACAAGTCCAAATGATTATG+TGG | - | chr5.2:28431845-28431864 | MS.gene032785:intron | 30.0% | |
| AATCAATTCCACTTAAAAGG+TGG | + | chr5.2:28432526-28432545 | None:intergenic | 30.0% | |
| ACGAAGAATTTATCATCAGT+TGG | - | chr5.2:28431706-28431725 | MS.gene032785:intron | 30.0% | |
| ATCGACATTACATTCTACAA+TGG | - | chr5.2:28431963-28431982 | MS.gene032785:CDS | 30.0% | |
| ATTGTCAAAAGTTGAGAGTT+TGG | - | chr5.2:28432261-28432280 | MS.gene032785:CDS | 30.0% | |
| CATTACATTCTACAATGGTT+TGG | - | chr5.2:28431968-28431987 | MS.gene032785:CDS | 30.0% | |
| CGAAGAATTTATCATCAGTT+GGG | - | chr5.2:28431707-28431726 | MS.gene032785:intron | 30.0% | |
| GATGATAAATTCTTCGTCTA+TGG | + | chr5.2:28431703-28431722 | None:intergenic | 30.0% | |
| TAATCAGTCAGAATGATTTC+TGG | - | chr5.2:28432566-28432585 | MS.gene032785:CDS | 30.0% | |
| TAATGTCGATGAAACCAAAA+TGG | + | chr5.2:28431953-28431972 | None:intergenic | 30.0% | |
| TCAATCATTGGCAAACTAAT+AGG | + | chr5.2:28431756-28431775 | None:intergenic | 30.0% | |
| TGAGAAATATGAAGCTGATA+TGG | + | chr5.2:28432326-28432345 | None:intergenic | 30.0% | |
| TTGAACCAATTGATCACATT+TGG | - | chr5.2:28431457-28431476 | MS.gene032785:CDS | 30.0% | |
| TTGTCAAAAGTTGAGAGTTT+GGG | - | chr5.2:28432262-28432281 | MS.gene032785:CDS | 30.0% | |
| ! | AACGTAAAACATGGAAGTTT+TGG | - | chr5.2:28432442-28432461 | MS.gene032785:CDS | 30.0% |
| !! | ACAAGTACTTAAGTTGGAAT+TGG | - | chr5.2:28432214-28432233 | MS.gene032785:CDS | 30.0% |
| !!! | AATGTTTTATTTGTGGGTGA+CGG | - | chr5.2:28432289-28432308 | MS.gene032785:CDS | 30.0% |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | chr5.2:28432283-28432302 | MS.gene032785:CDS | 30.0% |
| AAGTTGGAATTGGATGACAA+AGG | - | chr5.2:28432224-28432243 | MS.gene032785:CDS | 35.0% | |
| AATGGATACACTCTATTTGC+AGG | + | chr5.2:28431621-28431640 | None:intergenic | 35.0% | |
| ATAGGAGCAACATCCTTAAA+AGG | + | chr5.2:28431738-28431757 | None:intergenic | 35.0% | |
| CCAAACCAAATGTGATCAAT+TGG | + | chr5.2:28431465-28431484 | None:intergenic | 35.0% | |
| CCAATTGATCACATTTGGTT+TGG | - | chr5.2:28431462-28431481 | MS.gene032785:CDS | 35.0% | |
| CTTAACAACAAGAGATGTTG+TGG | - | chr5.2:28431654-28431673 | MS.gene032785:CDS | 35.0% | |
| GCATTACATTGCTCCTAAAT+TGG | + | chr5.2:28431542-28431561 | None:intergenic | 35.0% | |
| GGTGAGAAGGTTTATAAGTA+GGG | - | chr5.2:28432160-28432179 | MS.gene032785:CDS | 35.0% | |
| TGGTGAGAAGGTTTATAAGT+AGG | - | chr5.2:28432159-28432178 | MS.gene032785:CDS | 35.0% | |
| TTACATTGCTCCTAAATTGG+TGG | + | chr5.2:28431539-28431558 | None:intergenic | 35.0% | |
| ! | GCATAAAGTTACTTTGTCAG+TGG | - | chr5.2:28431815-28431834 | MS.gene032785:intron | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | - | chr5.2:28431907-28431926 | MS.gene032785:CDS | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+CGG | - | chr5.2:28432034-28432053 | MS.gene032785:CDS | 35.0% |
| ! | TTTCTGGACTCTTTTCTGAA+GGG | + | chr5.2:28431578-28431597 | None:intergenic | 35.0% |
| ! | TTTTCTGGACTCTTTTCTGA+AGG | + | chr5.2:28431579-28431598 | None:intergenic | 35.0% |
| !! | CTATACAAACATCGCTTTTC+TGG | + | chr5.2:28431594-28431613 | None:intergenic | 35.0% |
| !! | CTTTGAAGTGAGGTTTGTAA+GGG | + | chr5.2:28432477-28432496 | None:intergenic | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | - | chr5.2:28431894-28431913 | MS.gene032785:CDS | 35.0% |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | chr5.2:28432282-28432301 | MS.gene032785:CDS | 35.0% |
| AATTGGATGACAAAGGTGAG+AGG | - | chr5.2:28432231-28432250 | MS.gene032785:CDS | 40.0% | |
| ATCAACACGACCACCAATTT+AGG | - | chr5.2:28431526-28431545 | MS.gene032785:intron | 40.0% | |
| CAAACCTCACTTCAAAGGTA+TGG | - | chr5.2:28432480-28432499 | MS.gene032785:CDS | 40.0% | |
| CCTTACAAACCTCACTTCAA+AGG | - | chr5.2:28432475-28432494 | MS.gene032785:CDS | 40.0% | |
| GAACCTATTCCTTATCCTAG+AGG | - | chr5.2:28432397-28432416 | MS.gene032785:CDS | 40.0% | |
| GCTGCAACCACATAATCATT+TGG | + | chr5.2:28431855-28431874 | None:intergenic | 40.0% | |
| TCTGAAGGGATCATTAGCAT+AGG | + | chr5.2:28431564-28431583 | None:intergenic | 40.0% | |
| TGTTATTCAAGTGACCCTTC+GGG | - | chr5.2:28432035-28432054 | MS.gene032785:CDS | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | + | chr5.2:28431890-28431909 | None:intergenic | 40.0% | |
| ! | ATGCAAGACACTGACCATTT+TGG | - | chr5.2:28431936-28431955 | MS.gene032785:CDS | 40.0% |
| ! | CAGTTGGGTGAATCCTTTTA+AGG | - | chr5.2:28431722-28431741 | MS.gene032785:intron | 40.0% |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | - | chr5.2:28432412-28432431 | MS.gene032785:CDS | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | - | chr5.2:28432411-28432430 | MS.gene032785:CDS | 40.0% |
| !! | CCTTTGAAGTGAGGTTTGTA+AGG | + | chr5.2:28432478-28432497 | None:intergenic | 40.0% |
| !! | TCAAAAGGACCTCTAGGATA+AGG | + | chr5.2:28432409-28432428 | None:intergenic | 40.0% |
| !! | TTGGTTCTGTCTGCAAACAT+TGG | - | chr5.2:28431481-28431500 | MS.gene032785:CDS | 40.0% |
| AAAAGGTGGCACAACCCATA+TGG | + | chr5.2:28432512-28432531 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | + | chr5.2:28432511-28432530 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | - | chr5.2:28432135-28432154 | MS.gene032785:CDS | 45.0% | |
| AGGGTCAGAATGTGCAACAA+AGG | - | chr5.2:28432179-28432198 | MS.gene032785:CDS | 45.0% | |
| ATTCTCTGTTCCATACCCGA+AGG | + | chr5.2:28432053-28432072 | None:intergenic | 45.0% | |
| CCCATATCAAAAGGACCTCT+AGG | + | chr5.2:28432415-28432434 | None:intergenic | 45.0% | |
| TATGAAAGCTAGACAGCCAC+GGG | + | chr5.2:28431889-28431908 | None:intergenic | 45.0% | |
| TGGTGTATGCAGTAACTCGT+TGG | - | chr5.2:28431988-28432007 | MS.gene032785:CDS | 45.0% | |
| TTCTCTGTTCCATACCCGAA+GGG | + | chr5.2:28432052-28432071 | None:intergenic | 45.0% | |
| !! | GGACCTCTAGGATAAGGAAT+AGG | + | chr5.2:28432403-28432422 | None:intergenic | 45.0% |
| !! | GGTGGTCGTGTTGATGATTA+AGG | + | chr5.2:28431521-28431540 | None:intergenic | 45.0% |
| AAGGTATGGCACCTCCCATA+TGG | - | chr5.2:28432494-28432513 | MS.gene032785:CDS | 50.0% | |
| AGATGTTGTGGCTCCAGTCA+TGG | - | chr5.2:28431666-28431685 | MS.gene032785:CDS | 50.0% | |
| AGGTATGGCACCTCCCATAT+GGG | - | chr5.2:28432495-28432514 | MS.gene032785:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | - | chr5.2:28432139-28432158 | MS.gene032785:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | - | chr5.2:28432147-28432166 | MS.gene032785:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | - | chr5.2:28431870-28431889 | MS.gene032785:CDS | 50.0% | |
| GCAGTAGCTTCAGCTATTCG+CGG | - | chr5.2:28432591-28432610 | MS.gene032785:CDS | 50.0% | |
| TGGAACAATCTCCAAGCAGC+AGG | + | chr5.2:28432668-28432687 | None:intergenic | 50.0% | |
| TTCAAGTGACCCTTCGGGTA+TGG | - | chr5.2:28432040-28432059 | MS.gene032785:CDS | 50.0% | |
| ! | GGGTTGTGCCACCTTTTAAG+TGG | - | chr5.2:28432515-28432534 | MS.gene032785:CDS | 50.0% |
| !! | GGTGCCATACCTTTGAAGTG+AGG | + | chr5.2:28432487-28432506 | None:intergenic | 50.0% |
| CTTGCTGCTACGGTGATGAC+AGG | - | chr5.2:28432633-28432652 | MS.gene032785:CDS | 55.0% | |
| TAGCAGCAAGCAAAACGCGC+AGG | + | chr5.2:28432623-28432642 | None:intergenic | 55.0% | |
| ! | GGCGTGTTTTTCCTGCTGCT+TGG | - | chr5.2:28432654-28432673 | MS.gene032785:CDS | 55.0% |
| !! | GCGCGTTTTGCTTGCTGCTA+CGG | - | chr5.2:28432623-28432642 | MS.gene032785:CDS | 55.0% |
| GGTGGCACAACCCATATGGG+AGG | + | chr5.2:28432508-28432527 | None:intergenic | 60.0% | |
| GTTGTGGCTCCAGTCATGGC+TGG | - | chr5.2:28431670-28431689 | MS.gene032785:CDS | 60.0% | |
| GGTTGCGAGCCAGCCATGAC+TGG | + | chr5.2:28431682-28431701 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 28431396 | 28432697 | 28431396 | ID=MS.gene032785 |
| chr5.2 | mRNA | 28431396 | 28432697 | 28431396 | ID=MS.gene032785.t1;Parent=MS.gene032785 |
| chr5.2 | exon | 28431848 | 28432697 | 28431848 | ID=MS.gene032785.t1.exon1;Parent=MS.gene032785.t1 |
| chr5.2 | CDS | 28431848 | 28432697 | 28431848 | ID=cds.MS.gene032785.t1;Parent=MS.gene032785.t1 |
| chr5.2 | exon | 28431597 | 28431695 | 28431597 | ID=MS.gene032785.t1.exon2;Parent=MS.gene032785.t1 |
| chr5.2 | CDS | 28431597 | 28431695 | 28431597 | ID=cds.MS.gene032785.t1;Parent=MS.gene032785.t1 |
| chr5.2 | exon | 28431396 | 28431520 | 28431396 | ID=MS.gene032785.t1.exon3;Parent=MS.gene032785.t1 |
| chr5.2 | CDS | 28431396 | 28431520 | 28431396 | ID=cds.MS.gene032785.t1;Parent=MS.gene032785.t1 |
| Gene Sequence |
| Protein sequence |