Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49593.t1 | XP_003613576.1 | 91.3 | 381 | 32 | 1 | 1 | 380 | 3 | 383 | 2.70E-212 | 747.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49593.t1 | G7K9R3 | 91.3 | 381 | 32 | 1 | 1 | 380 | 3 | 383 | 2.0e-212 | 747.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49593.t1 | MTR_5g038260 | 91.339 | 381 | 32 | 1 | 1 | 380 | 3 | 383 | 0.0 | 728 |
| MS.gene49593.t1 | MTR_5g038230 | 83.684 | 380 | 37 | 2 | 1 | 380 | 1 | 355 | 0.0 | 649 |
| MS.gene49593.t1 | MTR_1g064570 | 49.628 | 403 | 177 | 8 | 1 | 380 | 1 | 400 | 1.07e-129 | 378 |
| MS.gene49593.t1 | MTR_1g108740 | 44.125 | 383 | 167 | 11 | 2 | 378 | 3 | 344 | 3.64e-95 | 288 |
| MS.gene49593.t1 | MTR_5g082770 | 50.980 | 306 | 130 | 10 | 1 | 303 | 1 | 289 | 1.57e-86 | 264 |
| MS.gene49593.t1 | MTR_7g077620 | 42.391 | 368 | 169 | 13 | 4 | 353 | 5 | 347 | 2.43e-76 | 241 |
| MS.gene49593.t1 | MTR_7g077660 | 41.058 | 397 | 181 | 16 | 4 | 380 | 5 | 368 | 2.20e-74 | 235 |
| MS.gene49593.t1 | MTR_7g077650 | 39.753 | 405 | 179 | 18 | 4 | 380 | 5 | 372 | 1.15e-70 | 226 |
| MS.gene49593.t1 | MTR_5g082780 | 44.444 | 252 | 119 | 7 | 103 | 351 | 1 | 234 | 1.03e-54 | 180 |
| MS.gene49593.t1 | MTR_7g076110 | 37.975 | 316 | 161 | 13 | 77 | 380 | 21 | 313 | 3.56e-46 | 160 |
| MS.gene49593.t1 | MTR_1g016150 | 43.386 | 189 | 82 | 7 | 2 | 177 | 3 | 179 | 7.97e-41 | 144 |
| MS.gene49593.t1 | MTR_1g016150 | 55.882 | 68 | 23 | 1 | 248 | 315 | 175 | 235 | 2.04e-14 | 72.8 |
| MS.gene49593.t1 | MTR_7g076100 | 39.921 | 253 | 120 | 10 | 139 | 380 | 69 | 300 | 8.08e-38 | 138 |
| MS.gene49593.t1 | MTR_6g023955 | 50.442 | 113 | 48 | 3 | 112 | 217 | 40 | 151 | 1.10e-25 | 103 |
| MS.gene49593.t1 | MTR_6g023955 | 57.377 | 61 | 26 | 0 | 319 | 379 | 149 | 209 | 1.37e-18 | 84.0 |
| MS.gene49593.t1 | MTR_1g108750 | 43.750 | 160 | 51 | 6 | 1 | 157 | 1 | 124 | 1.33e-23 | 95.1 |
| MS.gene49593.t1 | MTR_3g114990 | 26.923 | 416 | 235 | 17 | 1 | 375 | 20 | 407 | 7.82e-22 | 96.7 |
| MS.gene49593.t1 | MTR_3g114970 | 26.276 | 392 | 232 | 17 | 1 | 375 | 1 | 352 | 4.56e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGAGAAGGTTTATAAAT+AGG | 0.247820 | 5.1:+28853564 | MS.gene49593:CDS |
| TTAGTTCCGTCTGCAATAAT+TGG | 0.265369 | 5.1:+28852892 | MS.gene49593:CDS |
| GTTGGTTGTGTTGATGATTA+AGG | 0.265872 | 5.1:-28852929 | None:intergenic |
| TAATCATCTGGACTTGTTAT+AGG | 0.276577 | 5.1:-28853248 | None:intergenic |
| ATACAAGACACTGACCATTT+TGG | 0.281472 | 5.1:+28853344 | MS.gene49593:CDS |
| TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.1:+28853315 | MS.gene49593:CDS |
| CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5.1:-28853479 | None:intergenic |
| TTGTTATTCAAGTGACCCTT+GGG | 0.317511 | 5.1:+28853442 | MS.gene49593:CDS |
| TTAAGCATTGTCAATTCTAA+TGG | 0.317587 | 5.1:-28853047 | None:intergenic |
| ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.1:-28853146 | None:intergenic |
| TTGTCGAAACTTGAGAGTTT+AGG | 0.326449 | 5.1:+28853668 | MS.gene49593:CDS |
| GCCACCCATCGATAATTATA+TGG | 0.334313 | 5.1:+28853175 | MS.gene49593:CDS |
| ATCAACACAACCAACAATTT+AGG | 0.335160 | 5.1:+28852937 | MS.gene49593:CDS |
| TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.1:+28852868 | MS.gene49593:CDS |
| TTCTTTACATGTATTTAAGT+TGG | 0.365055 | 5.1:+28853613 | MS.gene49593:CDS |
| TCGATGGGTGGCAAACTAAT+AGG | 0.371653 | 5.1:-28853164 | None:intergenic |
| AATGGATACACTCTATTTGC+TGG | 0.375390 | 5.1:-28853029 | None:intergenic |
| CCCTTGAAGTAAGGTTTGTA+AGG | 0.376047 | 5.1:-28853881 | None:intergenic |
| CCCTTACAAACCTTACTTCA+AGG | 0.383312 | 5.1:+28853880 | MS.gene49593:CDS |
| GCATAGCCATGGAGAGAGAT+TGG | 0.384461 | 5.1:+28852799 | None:intergenic |
| GGTGAGAAGGTTTATAAATA+GGG | 0.399787 | 5.1:+28853565 | MS.gene49593:CDS |
| CTATATTGCTCCTAAATTGT+TGG | 0.399804 | 5.1:-28852947 | None:intergenic |
| CTAAACCAAATGTGATCAAT+TGG | 0.412059 | 5.1:-28852873 | None:intergenic |
| TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.1:+28853526 | MS.gene49593:CDS |
| CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.1:+28853376 | MS.gene49593:CDS |
| TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.1:-28853358 | None:intergenic |
| AACGTAAAACATGGAAGCTT+GGG | 0.422361 | 5.1:+28853848 | MS.gene49593:CDS |
| AAAAGGTGGCACAACCCATA+TGG | 0.433261 | 5.1:-28853915 | None:intergenic |
| AGGGTATGACACCTCCCATA+TGG | 0.446486 | 5.1:+28853900 | MS.gene49593:CDS |
| TCTAATCAATTCCACTGAAA+AGG | 0.457215 | 5.1:-28853932 | None:intergenic |
| TAACGTAAAACATGGAAGCT+TGG | 0.463159 | 5.1:+28853847 | MS.gene49593:CDS |
| GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.1:+28853552 | MS.gene49593:CDS |
| TTACGACTTCAATGTGCATA+AGG | 0.467976 | 5.1:+28853208 | MS.gene49593:CDS |
| GGTGTCATACCCTTGAAGTA+AGG | 0.468768 | 5.1:-28853890 | None:intergenic |
| TCAAAAGGACCTCTAGGATA+AGG | 0.471573 | 5.1:-28853812 | None:intergenic |
| TTTGTTATTCAAGTGACCCT+TGG | 0.473541 | 5.1:+28853441 | MS.gene49593:CDS |
| CCTTACAAACCTTACTTCAA+GGG | 0.500600 | 5.1:+28853881 | MS.gene49593:CDS |
| GCTGCAACCACATAATCATC+TGG | 0.504303 | 5.1:-28853260 | None:intergenic |
| TTATATATTCCCATATCAAA+AGG | 0.509410 | 5.1:-28853827 | None:intergenic |
| TTCAAGTGACCCTTGGGGTG+AGG | 0.511989 | 5.1:+28853448 | MS.gene49593:CDS |
| CATAGCCATGGAGAGAGATT+GGG | 0.528373 | 5.1:+28852800 | None:intergenic |
| GGGTATGACACCTCCCATAT+GGG | 0.531392 | 5.1:+28853901 | MS.gene49593:CDS |
| CTTAACAACAAGAGATGTTG+TGG | 0.537010 | 5.1:+28853065 | MS.gene49593:CDS |
| GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.1:-28853521 | None:intergenic |
| AAAGGTGGCACAACCCATAT+GGG | 0.541900 | 5.1:-28853914 | None:intergenic |
| TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.1:+28853302 | MS.gene49593:CDS |
| ACGTACCATATAATTATCGA+TGG | 0.547777 | 5.1:-28853180 | None:intergenic |
| TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.1:+28853530 | MS.gene49593:CDS |
| AAGTTGGAATTGAATGACAA+AGG | 0.553747 | 5.1:+28853629 | MS.gene49593:CDS |
| CCTTGAAGTAAGGTTTGTAA+GGG | 0.554707 | 5.1:-28853880 | None:intergenic |
| TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5.1:-28853294 | None:intergenic |
| CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.1:-28853818 | None:intergenic |
| TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.1:+28853529 | MS.gene49593:CDS |
| AACAAGTCCAGATGATTATG+TGG | 0.565322 | 5.1:+28853253 | MS.gene49593:CDS |
| GGAATTCTTTCCTCACCCCA+AGG | 0.565481 | 5.1:-28853458 | None:intergenic |
| ACGAAGAAGATGTCATCACT+TGG | 0.566470 | 5.1:+28853117 | MS.gene49593:CDS |
| TAATTATTATAATGAAGTAC+CGG | 0.574818 | 5.1:+28853787 | MS.gene49593:CDS |
| TCTGAAGGGATCATTAGCAT+AGG | 0.576479 | 5.1:-28852972 | None:intergenic |
| GGACCTCTAGGATAAGGAAC+CGG | 0.579650 | 5.1:-28853806 | None:intergenic |
| AATCAATTCCACTGAAAAGG+TGG | 0.581608 | 5.1:-28853929 | None:intergenic |
| ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.1:+28853371 | MS.gene49593:CDS |
| GAATTCTTTCCTCACCCCAA+GGG | 0.583805 | 5.1:-28853457 | None:intergenic |
| TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5.1:-28853295 | None:intergenic |
| GTTGTGGATCAAGTCATGGC+TGG | 0.604230 | 5.1:+28853081 | MS.gene49593:CDS |
| TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5.1:+28853396 | MS.gene49593:CDS |
| GTTTGCCCAATCTCTCTCCA+TGG | 0.606008 | 5.1:-28852805 | None:intergenic |
| AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.1:+28853540 | MS.gene49593:CDS |
| GGAATATATAACGTAAAACA+TGG | 0.617818 | 5.1:+28853839 | MS.gene49593:CDS |
| CGAAGAAGATGTCATCACTT+GGG | 0.623448 | 5.1:+28853118 | MS.gene49593:CDS |
| ACCATATAATTATCGATGGG+TGG | 0.627867 | 5.1:-28853176 | None:intergenic |
| CGTACCATATAATTATCGAT+GGG | 0.639191 | 5.1:-28853179 | None:intergenic |
| GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5.1:+28853278 | MS.gene49593:CDS |
| TGAGTGCCAATTATTGCAGA+CGG | 0.648917 | 5.1:-28852898 | None:intergenic |
| AGATGTTGTGGATCAAGTCA+TGG | 0.649193 | 5.1:+28853077 | MS.gene49593:CDS |
| GTACCGGTTCCTTATCCTAG+AGG | 0.650762 | 5.1:+28853803 | MS.gene49593:CDS |
| AGGGTCAACAATATCAACAA+AGG | 0.663310 | 5.1:+28853584 | MS.gene49593:CDS |
| TGTTATTCAAGTGACCCTTG+GGG | 0.675329 | 5.1:+28853443 | MS.gene49593:CDS |
| ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.1:+28853544 | MS.gene49593:CDS |
| GGTGGCACAACCCATATGGG+AGG | 0.700789 | 5.1:-28853911 | None:intergenic |
| TGTTATAGGATCAACTGACA+AGG | 0.708968 | 5.1:-28853234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATAATGAAGTAC+CGG | + | chr5.1:28853787-28853806 | MS.gene49593:CDS | 15.0% |
| !! | TACTTATTTAGTGAAATCAT+TGG | + | chr5.1:28853526-28853545 | MS.gene49593:CDS | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | - | chr5.1:28853830-28853849 | None:intergenic | 20.0% |
| !! | TTCTTTACATGTATTTAAGT+TGG | + | chr5.1:28853613-28853632 | MS.gene49593:CDS | 20.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | - | chr5.1:28853482-28853501 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | - | chr5.1:28853524-28853543 | None:intergenic | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | + | chr5.1:28853839-28853858 | MS.gene49593:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | + | chr5.1:28853530-28853549 | MS.gene49593:CDS | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | + | chr5.1:28853529-28853548 | MS.gene49593:CDS | 25.0% |
| !! | TTAAGCATTGTCAATTCTAA+TGG | - | chr5.1:28853050-28853069 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCCAACGAGTTA+CGG | - | chr5.1:28853408-28853427 | None:intergenic | 25.0% |
| AAGTTGGAATTGAATGACAA+AGG | + | chr5.1:28853629-28853648 | MS.gene49593:CDS | 30.0% | |
| ACGTACCATATAATTATCGA+TGG | - | chr5.1:28853183-28853202 | None:intergenic | 30.0% | |
| ATCAACACAACCAACAATTT+AGG | + | chr5.1:28852937-28852956 | MS.gene49593:CDS | 30.0% | |
| ATCGACATTACATTCTACAA+TGG | + | chr5.1:28853371-28853390 | MS.gene49593:CDS | 30.0% | |
| CATTACATTCTACAATGGTT+TGG | + | chr5.1:28853376-28853395 | MS.gene49593:CDS | 30.0% | |
| CGTACCATATAATTATCGAT+GGG | - | chr5.1:28853182-28853201 | None:intergenic | 30.0% | |
| CTAAACCAAATGTGATCAAT+TGG | - | chr5.1:28852876-28852895 | None:intergenic | 30.0% | |
| CTATATTGCTCCTAAATTGT+TGG | - | chr5.1:28852950-28852969 | None:intergenic | 30.0% | |
| GGTGAGAAGGTTTATAAATA+GGG | + | chr5.1:28853565-28853584 | MS.gene49593:CDS | 30.0% | |
| TAATGTCGATGAAACCAAAA+TGG | - | chr5.1:28853361-28853380 | None:intergenic | 30.0% | |
| TGGTGAGAAGGTTTATAAAT+AGG | + | chr5.1:28853564-28853583 | MS.gene49593:CDS | 30.0% | |
| TTGAACCAATTGATCACATT+TGG | + | chr5.1:28852868-28852887 | MS.gene49593:CDS | 30.0% | |
| !! | TAATCATCTGGACTTGTTAT+AGG | - | chr5.1:28853251-28853270 | None:intergenic | 30.0% |
| AACAAGTCCAGATGATTATG+TGG | + | chr5.1:28853253-28853272 | MS.gene49593:CDS | 35.0% | |
| AACGTAAAACATGGAAGCTT+GGG | + | chr5.1:28853848-28853867 | MS.gene49593:CDS | 35.0% | |
| AATGGATACACTCTATTTGC+TGG | - | chr5.1:28853032-28853051 | None:intergenic | 35.0% | |
| ACCATATAATTATCGATGGG+TGG | - | chr5.1:28853179-28853198 | None:intergenic | 35.0% | |
| AGGGTCAACAATATCAACAA+AGG | + | chr5.1:28853584-28853603 | MS.gene49593:CDS | 35.0% | |
| ATAGGAGCAACATCCTTAAA+AGG | - | chr5.1:28853149-28853168 | None:intergenic | 35.0% | |
| CCTTACAAACCTTACTTCAA+GGG | + | chr5.1:28853881-28853900 | MS.gene49593:CDS | 35.0% | |
| CCTTGAAGTAAGGTTTGTAA+GGG | - | chr5.1:28853883-28853902 | None:intergenic | 35.0% | |
| CTTAACAACAAGAGATGTTG+TGG | + | chr5.1:28853065-28853084 | MS.gene49593:CDS | 35.0% | |
| TAACGTAAAACATGGAAGCT+TGG | + | chr5.1:28853847-28853866 | MS.gene49593:CDS | 35.0% | |
| TGTTATAGGATCAACTGACA+AGG | - | chr5.1:28853237-28853256 | None:intergenic | 35.0% | |
| TTACGACTTCAATGTGCATA+AGG | + | chr5.1:28853208-28853227 | MS.gene49593:CDS | 35.0% | |
| TTAGTTCCGTCTGCAATAAT+TGG | + | chr5.1:28852892-28852911 | MS.gene49593:CDS | 35.0% | |
| TTGTCGAAACTTGAGAGTTT+AGG | + | chr5.1:28853668-28853687 | MS.gene49593:CDS | 35.0% | |
| ! | ATACAAGACACTGACCATTT+TGG | + | chr5.1:28853344-28853363 | MS.gene49593:CDS | 35.0% |
| ! | CTATACAAACAACGCTTTTC+TGG | - | chr5.1:28853005-28853024 | None:intergenic | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | + | chr5.1:28853315-28853334 | MS.gene49593:CDS | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+GGG | + | chr5.1:28853442-28853461 | MS.gene49593:CDS | 35.0% |
| ! | TTTCTGGACTGTTTTCTGAA+GGG | - | chr5.1:28852989-28853008 | None:intergenic | 35.0% |
| ! | TTTTCTGGACTGTTTTCTGA+AGG | - | chr5.1:28852990-28853009 | None:intergenic | 35.0% |
| !! | GTTGGTTGTGTTGATGATTA+AGG | - | chr5.1:28852932-28852951 | None:intergenic | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | + | chr5.1:28853302-28853321 | MS.gene49593:CDS | 35.0% |
| !! | TTTGTTATTCAAGTGACCCT+TGG | + | chr5.1:28853441-28853460 | MS.gene49593:CDS | 35.0% |
| !!! | AATGTTTTGTTTGTGGGTGA+TGG | + | chr5.1:28853695-28853714 | MS.gene49593:CDS | 35.0% |
| !!! | AGGAGACAATGTTTTGTTTG+TGG | + | chr5.1:28853688-28853707 | MS.gene49593:CDS | 35.0% |
| !!! | GGAGACAATGTTTTGTTTGT+GGG | + | chr5.1:28853689-28853708 | MS.gene49593:CDS | 35.0% |
| ACGAAGAAGATGTCATCACT+TGG | + | chr5.1:28853117-28853136 | MS.gene49593:CDS | 40.0% | |
| AGATGTTGTGGATCAAGTCA+TGG | + | chr5.1:28853077-28853096 | MS.gene49593:CDS | 40.0% | |
| CCCTTACAAACCTTACTTCA+AGG | + | chr5.1:28853880-28853899 | MS.gene49593:CDS | 40.0% | |
| CCCTTGAAGTAAGGTTTGTA+AGG | - | chr5.1:28853884-28853903 | None:intergenic | 40.0% | |
| CGAAGAAGATGTCATCACTT+GGG | + | chr5.1:28853118-28853137 | MS.gene49593:CDS | 40.0% | |
| GCCACCCATCGATAATTATA+TGG | + | chr5.1:28853175-28853194 | MS.gene49593:CDS | 40.0% | |
| TCTGAAGGGATCATTAGCAT+AGG | - | chr5.1:28852975-28852994 | None:intergenic | 40.0% | |
| TGAGTGCCAATTATTGCAGA+CGG | - | chr5.1:28852901-28852920 | None:intergenic | 40.0% | |
| TGTTATTCAAGTGACCCTTG+GGG | + | chr5.1:28853443-28853462 | MS.gene49593:CDS | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | - | chr5.1:28853298-28853317 | None:intergenic | 40.0% | |
| ! | CACTTGGGAGAATCCTTTTA+AGG | + | chr5.1:28853133-28853152 | MS.gene49593:CDS | 40.0% |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | + | chr5.1:28853818-28853837 | MS.gene49593:CDS | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | + | chr5.1:28853817-28853836 | MS.gene49593:CDS | 40.0% |
| !! | TCAAAAGGACCTCTAGGATA+AGG | - | chr5.1:28853815-28853834 | None:intergenic | 40.0% |
| AAAAGGTGGCACAACCCATA+TGG | - | chr5.1:28853918-28853937 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | - | chr5.1:28853917-28853936 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | + | chr5.1:28853540-28853559 | MS.gene49593:CDS | 45.0% | |
| CCCATATCAAAAGGACCTCT+AGG | - | chr5.1:28853821-28853840 | None:intergenic | 45.0% | |
| GAATTCTTTCCTCACCCCAA+GGG | - | chr5.1:28853460-28853479 | None:intergenic | 45.0% | |
| GCTGCAACCACATAATCATC+TGG | - | chr5.1:28853263-28853282 | None:intergenic | 45.0% | |
| TATGAAAGCTAGACAGCCAC+GGG | - | chr5.1:28853297-28853316 | None:intergenic | 45.0% | |
| TCGATGGGTGGCAAACTAAT+AGG | - | chr5.1:28853167-28853186 | None:intergenic | 45.0% | |
| ! | GGTGTCATACCCTTGAAGTA+AGG | - | chr5.1:28853893-28853912 | None:intergenic | 45.0% |
| AGGGTATGACACCTCCCATA+TGG | + | chr5.1:28853900-28853919 | MS.gene49593:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | + | chr5.1:28853544-28853563 | MS.gene49593:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | + | chr5.1:28853552-28853571 | MS.gene49593:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | + | chr5.1:28853278-28853297 | MS.gene49593:CDS | 50.0% | |
| GGAATTCTTTCCTCACCCCA+AGG | - | chr5.1:28853461-28853480 | None:intergenic | 50.0% | |
| GGGTATGACACCTCCCATAT+GGG | + | chr5.1:28853901-28853920 | MS.gene49593:CDS | 50.0% | |
| GTTGTGGATCAAGTCATGGC+TGG | + | chr5.1:28853081-28853100 | MS.gene49593:CDS | 50.0% | |
| TGGTGTATGCCGTAACTCGT+TGG | + | chr5.1:28853396-28853415 | MS.gene49593:CDS | 50.0% | |
| !! | GGACCTCTAGGATAAGGAAC+CGG | - | chr5.1:28853809-28853828 | None:intergenic | 50.0% |
| !! | GTACCGGTTCCTTATCCTAG+AGG | + | chr5.1:28853803-28853822 | MS.gene49593:CDS | 50.0% |
| TTCAAGTGACCCTTGGGGTG+AGG | + | chr5.1:28853448-28853467 | MS.gene49593:CDS | 55.0% | |
| ! | GGGTTGTGCCACCTTTTCAG+TGG | + | chr5.1:28853921-28853940 | MS.gene49593:CDS | 55.0% |
| GGTGGCACAACCCATATGGG+AGG | - | chr5.1:28853914-28853933 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28852807 | 28853949 | 28852807 | ID=MS.gene49593 |
| chr5.1 | mRNA | 28852807 | 28853949 | 28852807 | ID=MS.gene49593.t1;Parent=MS.gene49593 |
| chr5.1 | exon | 28852807 | 28853949 | 28852807 | ID=MS.gene49593.t1.exon1;Parent=MS.gene49593.t1 |
| chr5.1 | CDS | 28852807 | 28853949 | 28852807 | ID=cds.MS.gene49593.t1;Parent=MS.gene49593.t1 |
| Gene Sequence |
| Protein sequence |