Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27639.t1 | RHN46952.1 | 58.5 | 386 | 128 | 9 | 1 | 371 | 1 | 369 | 3.60E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27639.t1 | G7L4M6 | 58.5 | 386 | 128 | 9 | 1 | 371 | 1 | 369 | 2.6e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27639.t1 | MTR_7g077620 | 60.156 | 384 | 127 | 8 | 1 | 372 | 1 | 370 | 3.46e-146 | 419 |
| MS.gene27639.t1 | MTR_7g077650 | 57.179 | 390 | 133 | 11 | 1 | 374 | 1 | 372 | 2.20e-135 | 391 |
| MS.gene27639.t1 | MTR_7g077660 | 56.784 | 398 | 118 | 15 | 1 | 374 | 1 | 368 | 1.02e-128 | 374 |
| MS.gene27639.t1 | MTR_7g076110 | 54.072 | 307 | 112 | 9 | 83 | 374 | 21 | 313 | 6.59e-98 | 293 |
| MS.gene27639.t1 | MTR_7g076100 | 63.710 | 248 | 69 | 5 | 135 | 374 | 66 | 300 | 1.32e-96 | 290 |
| MS.gene27639.t1 | MTR_7g076100 | 82.979 | 47 | 8 | 0 | 1 | 47 | 1 | 47 | 3.37e-19 | 87.4 |
| MS.gene27639.t1 | MTR_5g038260 | 41.176 | 408 | 171 | 17 | 6 | 374 | 6 | 383 | 4.90e-79 | 248 |
| MS.gene27639.t1 | MTR_1g108740 | 43.045 | 381 | 168 | 14 | 3 | 372 | 2 | 344 | 5.39e-76 | 238 |
| MS.gene27639.t1 | MTR_5g038230 | 39.599 | 399 | 160 | 15 | 6 | 372 | 4 | 353 | 6.04e-73 | 231 |
| MS.gene27639.t1 | MTR_1g064570 | 39.618 | 419 | 183 | 17 | 5 | 374 | 3 | 400 | 2.14e-65 | 213 |
| MS.gene27639.t1 | MTR_5g082770 | 42.903 | 310 | 134 | 9 | 6 | 297 | 4 | 288 | 3.05e-63 | 204 |
| MS.gene27639.t1 | MTR_7g076130 | 73.387 | 124 | 27 | 3 | 165 | 282 | 25 | 148 | 5.86e-56 | 181 |
| MS.gene27639.t1 | MTR_1g016150 | 50.000 | 184 | 83 | 4 | 3 | 179 | 2 | 183 | 2.60e-48 | 164 |
| MS.gene27639.t1 | MTR_1g016150 | 55.556 | 63 | 21 | 2 | 251 | 310 | 177 | 235 | 3.87e-11 | 63.2 |
| MS.gene27639.t1 | MTR_5g082780 | 39.662 | 237 | 99 | 8 | 110 | 325 | 1 | 214 | 3.38e-38 | 137 |
| MS.gene27639.t1 | MTR_1g108750 | 51.316 | 152 | 42 | 7 | 6 | 156 | 4 | 124 | 1.61e-26 | 102 |
| MS.gene27639.t1 | MTR_3g114970 | 24.022 | 358 | 217 | 12 | 5 | 336 | 3 | 331 | 4.78e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATAGTAAGTAAAATT+AGG | 0.229231 | 7.2:+29664262 | None:intergenic |
| AAAGAGCACGCCAACCATTT+TGG | 0.235367 | 7.2:-29664411 | MS.gene27639:CDS |
| GCATGTTGACCCTATGTTTA+TGG | 0.235574 | 7.2:+29664779 | None:intergenic |
| TGTGAAGGATGGAAGCTTTC+GGG | 0.254954 | 7.2:-29663876 | MS.gene27639:CDS |
| ATTCCTTTAGAAGATACTTT+TGG | 0.274093 | 7.2:-29663838 | MS.gene27639:CDS |
| AAGTCTTGATGTATATAAAT+TGG | 0.276584 | 7.2:-29664122 | MS.gene27639:CDS |
| AATGAACAAGCTTGAGAGTT+TGG | 0.278023 | 7.2:-29664068 | MS.gene27639:CDS |
| GGTATACTACAACACTTAAA+AGG | 0.307324 | 7.2:+29664553 | None:intergenic |
| AAGATTACAAAATCCGTAAA+TGG | 0.312492 | 7.2:+29664441 | None:intergenic |
| ATAGAAGTGAGTTTGATTCT+AGG | 0.333522 | 7.2:-29663913 | MS.gene27639:CDS |
| TAATCATTAGGGCTTGTAAT+GGG | 0.360286 | 7.2:+29664475 | None:intergenic |
| AAGAACACATCGATCATGTT+AGG | 0.364419 | 7.2:-29664846 | MS.gene27639:CDS |
| TCACGAGCTATAATCCAAAA+TGG | 0.365846 | 7.2:+29664397 | None:intergenic |
| GTCTGGGCTCTTCATTTGGT+TGG | 0.366330 | 7.2:-29664618 | MS.gene27639:CDS |
| TATGTCGTTGCAGCCATTTA+CGG | 0.367345 | 7.2:-29664454 | MS.gene27639:CDS |
| ACCATTGGTCTTTGAGGATC+AGG | 0.373227 | 7.2:+29664746 | None:intergenic |
| AGGTGTCTGGGCTCTTCATT+TGG | 0.375113 | 7.2:-29664622 | MS.gene27639:CDS |
| AGAAGAGCTACCTCTTAGTT+TGG | 0.376131 | 7.2:-29664884 | MS.gene27639:CDS |
| GCTGCAACGACATAATCATT+AGG | 0.378882 | 7.2:+29664463 | None:intergenic |
| ATGTGAAGGATGGAAGCTTT+CGG | 0.382705 | 7.2:-29663877 | MS.gene27639:CDS |
| TCTCATAGTAAGTAAAATTA+GGG | 0.387493 | 7.2:+29664263 | None:intergenic |
| GCCATACAAGGATCTCTTCC+CGG | 0.394890 | 7.2:+29664699 | None:intergenic |
| GGGTTCAACCACAATTTCAA+TGG | 0.403923 | 7.2:-29663817 | MS.gene27639:CDS |
| AACCTCTTGTTTCTCCAAGT+TGG | 0.405691 | 7.2:-29663999 | MS.gene27639:CDS |
| TTTGAGAGGTGGCAGACTAA+TGG | 0.407722 | 7.2:+29664528 | None:intergenic |
| TATGGTAAGTGAAAGGTGTC+TGG | 0.415346 | 7.2:-29664635 | MS.gene27639:CDS |
| AAAAGGATTGACTAGAGTTA+TGG | 0.415743 | 7.2:+29664570 | None:intergenic |
| CTGCAACGACATAATCATTA+GGG | 0.419633 | 7.2:+29664464 | None:intergenic |
| AAAGCCTTTCATCGTAGCAT+TGG | 0.428788 | 7.2:+29664209 | None:intergenic |
| TTGAGAGGTGGCAGACTAAT+GGG | 0.429349 | 7.2:+29664529 | None:intergenic |
| ACCAATACCATTGGTCTTTG+AGG | 0.432284 | 7.2:+29664740 | None:intergenic |
| AAGCCTTTCATCGTAGCATT+GGG | 0.439729 | 7.2:+29664210 | None:intergenic |
| TCTTTGAGGATCAGGATCAT+TGG | 0.444334 | 7.2:+29664754 | None:intergenic |
| CACATCGATCATGTTAGGTT+TGG | 0.454086 | 7.2:-29664841 | MS.gene27639:CDS |
| TGATGTATATAAATTGGAAC+TGG | 0.461520 | 7.2:-29664116 | MS.gene27639:CDS |
| AGTGAGTTTGATTCTAGGCT+AGG | 0.464620 | 7.2:-29663908 | MS.gene27639:CDS |
| CAATGACGAAGGTGGCAGAC+TGG | 0.469940 | 7.2:-29664915 | MS.gene27639:CDS |
| TTTGAGATTGATTCTAGGCT+AGG | 0.472790 | 7.2:-29663953 | MS.gene27639:CDS |
| GGTTCAACCACAATTTCAAT+GGG | 0.475405 | 7.2:-29663816 | MS.gene27639:CDS |
| TCCTCAAAGACCAATGGTAT+TGG | 0.480545 | 7.2:-29664741 | MS.gene27639:CDS |
| CAAAGCTTAACCATAAACAT+AGG | 0.485104 | 7.2:-29664789 | MS.gene27639:CDS |
| TTGAGATTGATTCTAGGCTA+GGG | 0.501498 | 7.2:-29663952 | MS.gene27639:CDS |
| AACCCAAAAGTATCTTCTAA+AGG | 0.503588 | 7.2:+29663835 | None:intergenic |
| CAACCCAATGCTACGATGAA+AGG | 0.504295 | 7.2:-29664213 | MS.gene27639:CDS |
| AATCTTTGAATGGAGACATA+TGG | 0.507395 | 7.2:-29664177 | MS.gene27639:CDS |
| ATAATCATTAGGGCTTGTAA+TGG | 0.513412 | 7.2:+29664474 | None:intergenic |
| TTGTCAAGAACCAAACTAAG+AGG | 0.513613 | 7.2:+29664874 | None:intergenic |
| ACCTCTCAAATCTGTTTACA+AGG | 0.516115 | 7.2:-29664515 | MS.gene27639:CDS |
| GACACCTTTCACTTACCATA+CGG | 0.516907 | 7.2:+29664638 | None:intergenic |
| GATCAATCCCATTGAAATTG+TGG | 0.519492 | 7.2:+29663809 | None:intergenic |
| GCGACTTAGAATGCCATACA+AGG | 0.519610 | 7.2:+29664687 | None:intergenic |
| AGGAGGATTGTTGATCTTGA+AGG | 0.522699 | 7.2:+29664303 | None:intergenic |
| TGTAATGGGGTCAGCGGACA+AGG | 0.524243 | 7.2:+29664489 | None:intergenic |
| TAGTTTGGTTCTTGACAAGT+TGG | 0.526962 | 7.2:-29664869 | MS.gene27639:CDS |
| CTTTCATCGTAGCATTGGGT+TGG | 0.532676 | 7.2:+29664214 | None:intergenic |
| TTGGTGTCGTGTGCAAGTCT+TGG | 0.536928 | 7.2:-29664822 | MS.gene27639:CDS |
| GAGCTATAATCCAAAATGGT+TGG | 0.539353 | 7.2:+29664401 | None:intergenic |
| AATGACGAAGGTGGCAGACT+GGG | 0.539805 | 7.2:-29664914 | MS.gene27639:CDS |
| GTGAGTTTGATTCTAGGCTA+GGG | 0.540534 | 7.2:-29663907 | MS.gene27639:CDS |
| CTGATATTTGCTGACAGCCA+TGG | 0.542450 | 7.2:-29664340 | MS.gene27639:CDS |
| GGGATCTATAATGTGAAGGA+TGG | 0.560695 | 7.2:-29663887 | MS.gene27639:CDS |
| ACCGGGAAGAGATCCTTGTA+TGG | 0.564728 | 7.2:-29664700 | MS.gene27639:CDS |
| TTGAGGATCAGGATCATTGG+TGG | 0.568755 | 7.2:+29664757 | None:intergenic |
| ACACCTTTCACTTACCATAC+GGG | 0.569484 | 7.2:+29664639 | None:intergenic |
| TTGGAACTGGATGCCGAGAG+TGG | 0.577039 | 7.2:-29664103 | MS.gene27639:CDS |
| AAAGCTTAACCATAAACATA+GGG | 0.578569 | 7.2:-29664788 | MS.gene27639:CDS |
| ATGGTAAGTGAAAGGTGTCT+GGG | 0.587373 | 7.2:-29664634 | MS.gene27639:CDS |
| TATCCCGTATGGTAAGTGAA+AGG | 0.591101 | 7.2:-29664642 | MS.gene27639:CDS |
| TTGTAAACAGATTTGAGAGG+TGG | 0.604090 | 7.2:+29664517 | None:intergenic |
| ACTCATGAGACCAATACCAT+TGG | 0.610733 | 7.2:+29664731 | None:intergenic |
| GCTAGGGATCTATAATGTGA+AGG | 0.612222 | 7.2:-29663891 | MS.gene27639:CDS |
| TTCCAACTTGGAGAAACAAG+AGG | 0.613775 | 7.2:+29663997 | None:intergenic |
| GCTAGGGATCTATAATGTGA+AGG | 0.614662 | 7.2:-29663936 | MS.gene27639:CDS |
| AGGATACAATGGTGTGTCCA+TGG | 0.616988 | 7.2:+29664323 | None:intergenic |
| AATCATTAGGGCTTGTAATG+GGG | 0.620431 | 7.2:+29664476 | None:intergenic |
| TCCTGATCCTCAAAGACCAA+TGG | 0.626117 | 7.2:-29664747 | MS.gene27639:CDS |
| CTTAGGCTTGGCAATGACGA+AGG | 0.631068 | 7.2:-29664926 | None:intergenic |
| GGGTCATATGAGTCATCGCA+AGG | 0.632363 | 7.2:+29664283 | None:intergenic |
| GTTGATCTTGAAGGATACAA+TGG | 0.633785 | 7.2:+29664312 | None:intergenic |
| AGGCTTGGCAATGACGAAGG+TGG | 0.649782 | 7.2:-29664923 | None:intergenic |
| AGGGCTTGTAATGGGGTCAG+CGG | 0.661148 | 7.2:+29664483 | None:intergenic |
| AAGTATCTTCTAAAGGAATG+CGG | 0.678372 | 7.2:+29663842 | None:intergenic |
| TTTGAATGGAGACATATGGA+TGG | 0.693585 | 7.2:-29664173 | MS.gene27639:CDS |
| GCCTTGTAAACAGATTTGAG+AGG | 0.700590 | 7.2:+29664514 | None:intergenic |
| AGAGGTGGCAGACTAATGGG+AGG | 0.724272 | 7.2:+29664532 | None:intergenic |
| TCATATGAGTCATCGCAAGG+AGG | 0.728268 | 7.2:+29664286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTCTTGATGTATATAAAT+TGG | - | chr7.2:29664602-29664621 | MS.gene27639:CDS | 20.0% |
| !! | TCTCATAGTAAGTAAAATTA+GGG | + | chr7.2:29664464-29664483 | None:intergenic | 20.0% |
| !! | TTCTCATAGTAAGTAAAATT+AGG | + | chr7.2:29664465-29664484 | None:intergenic | 20.0% |
| !!! | ACTAGTGTTGTATTTTATAA+AGG | - | chr7.2:29664360-29664379 | MS.gene27639:CDS | 20.0% |
| !!! | TATTTTGTGAAATCTTTGAA+TGG | - | chr7.2:29664537-29664556 | MS.gene27639:CDS | 20.0% |
| ! | AAAGCTTAACCATAAACATA+GGG | - | chr7.2:29663936-29663955 | MS.gene27639:CDS | 25.0% |
| ! | AAGATTACAAAATCCGTAAA+TGG | + | chr7.2:29664286-29664305 | None:intergenic | 25.0% |
| ! | TGATGTATATAAATTGGAAC+TGG | - | chr7.2:29664608-29664627 | MS.gene27639:CDS | 25.0% |
| !!! | AACGTTTTATTTGTTGGAAT+CGG | - | chr7.2:29664684-29664703 | MS.gene27639:CDS | 25.0% |
| !!! | ATTCCTTTAGAAGATACTTT+TGG | - | chr7.2:29664886-29664905 | MS.gene27639:CDS | 25.0% |
| !!! | TTCCTTTAGAAGATACTTTT+GGG | - | chr7.2:29664887-29664906 | MS.gene27639:CDS | 25.0% |
| !!! | TTCTTTTTGAGATTGATTCT+AGG | - | chr7.2:29664766-29664785 | MS.gene27639:CDS | 25.0% |
| AAAAGGATTGACTAGAGTTA+TGG | + | chr7.2:29664157-29664176 | None:intergenic | 30.0% | |
| AATCTTTGAATGGAGACATA+TGG | - | chr7.2:29664547-29664566 | MS.gene27639:CDS | 30.0% | |
| ATAATCATTAGGGCTTGTAA+TGG | + | chr7.2:29664253-29664272 | None:intergenic | 30.0% | |
| ATACGGGATAAAAATGTAAC+AGG | + | chr7.2:29664072-29664091 | None:intergenic | 30.0% | |
| ATAGAAGTGAGTTTGATTCT+AGG | - | chr7.2:29664811-29664830 | MS.gene27639:CDS | 30.0% | |
| CAAAGCTTAACCATAAACAT+AGG | - | chr7.2:29663935-29663954 | MS.gene27639:CDS | 30.0% | |
| GGTATACTACAACACTTAAA+AGG | + | chr7.2:29664174-29664193 | None:intergenic | 30.0% | |
| TAATCATTAGGGCTTGTAAT+GGG | + | chr7.2:29664252-29664271 | None:intergenic | 30.0% | |
| TACGGGATAAAAATGTAACA+GGG | + | chr7.2:29664071-29664090 | None:intergenic | 30.0% | |
| ! | AAGTATCTTCTAAAGGAATG+CGG | + | chr7.2:29664885-29664904 | None:intergenic | 30.0% |
| ! | AATCGAATCATTTTCCAACT+TGG | + | chr7.2:29664742-29664761 | None:intergenic | 30.0% |
| ! | TGTTACATTTTTATCCCGTA+TGG | - | chr7.2:29664071-29664090 | MS.gene27639:CDS | 30.0% |
| !! | AACCCAAAAGTATCTTCTAA+AGG | + | chr7.2:29664892-29664911 | None:intergenic | 30.0% |
| !!! | ACGTTTTATTTGTTGGAATC+GGG | - | chr7.2:29664685-29664704 | MS.gene27639:CDS | 30.0% |
| !!! | ATTTGGTTGGTTTTCATTTG+TGG | - | chr7.2:29664119-29664138 | MS.gene27639:CDS | 30.0% |
| !!! | GAAGACAACGTTTTATTTGT+TGG | - | chr7.2:29664678-29664697 | MS.gene27639:CDS | 30.0% |
| AAGAACACATCGATCATGTT+AGG | - | chr7.2:29663878-29663897 | MS.gene27639:CDS | 35.0% | |
| AATCATTAGGGCTTGTAATG+GGG | + | chr7.2:29664251-29664270 | None:intergenic | 35.0% | |
| AATGAACAAGCTTGAGAGTT+TGG | - | chr7.2:29664656-29664675 | MS.gene27639:CDS | 35.0% | |
| ACCTCTCAAATCTGTTTACA+AGG | - | chr7.2:29664209-29664228 | MS.gene27639:CDS | 35.0% | |
| CTGCAACGACATAATCATTA+GGG | + | chr7.2:29664263-29664282 | None:intergenic | 35.0% | |
| GAGCTATAATCCAAAATGGT+TGG | + | chr7.2:29664326-29664345 | None:intergenic | 35.0% | |
| GGTTCAACCACAATTTCAAT+GGG | - | chr7.2:29664908-29664927 | MS.gene27639:CDS | 35.0% | |
| GTTGATCTTGAAGGATACAA+TGG | + | chr7.2:29664415-29664434 | None:intergenic | 35.0% | |
| TCACGAGCTATAATCCAAAA+TGG | + | chr7.2:29664330-29664349 | None:intergenic | 35.0% | |
| TCTCATGAGTATGCAAAAAC+CGG | - | chr7.2:29664006-29664025 | MS.gene27639:CDS | 35.0% | |
| TTGTAAACAGATTTGAGAGG+TGG | + | chr7.2:29664210-29664229 | None:intergenic | 35.0% | |
| TTGTCAAGAACCAAACTAAG+AGG | + | chr7.2:29663853-29663872 | None:intergenic | 35.0% | |
| TTTGAATGGAGACATATGGA+TGG | - | chr7.2:29664551-29664570 | MS.gene27639:CDS | 35.0% | |
| ! | TTGAGATTGATTCTAGGCTA+GGG | - | chr7.2:29664772-29664791 | MS.gene27639:CDS | 35.0% |
| ! | TTTGAGATTGATTCTAGGCT+AGG | - | chr7.2:29664771-29664790 | MS.gene27639:CDS | 35.0% |
| !! | TAGTTTGGTTCTTGACAAGT+TGG | - | chr7.2:29663855-29663874 | MS.gene27639:CDS | 35.0% |
| !! | TTGTTCAAGTTTTCCACTCT+CGG | + | chr7.2:29664637-29664656 | None:intergenic | 35.0% |
| !!! | CGTTTTATTTGTTGGAATCG+GGG | - | chr7.2:29664686-29664705 | MS.gene27639:CDS | 35.0% |
| AAAGCCTTTCATCGTAGCAT+TGG | + | chr7.2:29664518-29664537 | None:intergenic | 40.0% | |
| AAGCCTTTCATCGTAGCATT+GGG | + | chr7.2:29664517-29664536 | None:intergenic | 40.0% | |
| ACACCTTTCACTTACCATAC+GGG | + | chr7.2:29664088-29664107 | None:intergenic | 40.0% | |
| ACTCATGAGACCAATACCAT+TGG | + | chr7.2:29663996-29664015 | None:intergenic | 40.0% | |
| AGAAGAGCTACCTCTTAGTT+TGG | - | chr7.2:29663840-29663859 | MS.gene27639:CDS | 40.0% | |
| AGGAGGATTGTTGATCTTGA+AGG | + | chr7.2:29664424-29664443 | None:intergenic | 40.0% | |
| AGTGAGTTTGATTCTAGGCT+AGG | - | chr7.2:29664816-29664835 | MS.gene27639:CDS | 40.0% | |
| ATGTGAAGGATGGAAGCTTT+CGG | - | chr7.2:29664847-29664866 | MS.gene27639:CDS | 40.0% | |
| CACATCGATCATGTTAGGTT+TGG | - | chr7.2:29663883-29663902 | MS.gene27639:CDS | 40.0% | |
| CTCATGAGTATGCAAAAACC+GGG | - | chr7.2:29664007-29664026 | MS.gene27639:CDS | 40.0% | |
| GACACCTTTCACTTACCATA+CGG | + | chr7.2:29664089-29664108 | None:intergenic | 40.0% | |
| GCATGTTGACCCTATGTTTA+TGG | + | chr7.2:29663948-29663967 | None:intergenic | 40.0% | |
| GCCTTGTAAACAGATTTGAG+AGG | + | chr7.2:29664213-29664232 | None:intergenic | 40.0% | |
| GCTAGGGATCTATAATGTGA+AGG | - | chr7.2:29664788-29664807 | MS.gene27639:CDS | 40.0% | |
| GCTGCAACGACATAATCATT+AGG | + | chr7.2:29664264-29664283 | None:intergenic | 40.0% | |
| GGGATCTATAATGTGAAGGA+TGG | - | chr7.2:29664792-29664811 | MS.gene27639:CDS | 40.0% | |
| GGGTTCAACCACAATTTCAA+TGG | - | chr7.2:29664907-29664926 | MS.gene27639:CDS | 40.0% | |
| GTGAGTTTGATTCTAGGCTA+GGG | - | chr7.2:29664817-29664836 | MS.gene27639:CDS | 40.0% | |
| TATCCCGTATGGTAAGTGAA+AGG | - | chr7.2:29664082-29664101 | MS.gene27639:CDS | 40.0% | |
| TATGTCGTTGCAGCCATTTA+CGG | - | chr7.2:29664270-29664289 | MS.gene27639:CDS | 40.0% | |
| TCCTCAAAGACCAATGGTAT+TGG | - | chr7.2:29663983-29664002 | MS.gene27639:CDS | 40.0% | |
| TTCCAACTTGGAGAAACAAG+AGG | + | chr7.2:29664730-29664749 | None:intergenic | 40.0% | |
| ! | AACCTCTTGTTTCTCCAAGT+TGG | - | chr7.2:29664725-29664744 | MS.gene27639:CDS | 40.0% |
| ! | TCTTTGAGGATCAGGATCAT+TGG | + | chr7.2:29663973-29663992 | None:intergenic | 40.0% |
| !! | ACCAATACCATTGGTCTTTG+AGG | + | chr7.2:29663987-29664006 | None:intergenic | 40.0% |
| !! | ATGGTAAGTGAAAGGTGTCT+GGG | - | chr7.2:29664090-29664109 | MS.gene27639:CDS | 40.0% |
| !! | TATGGTAAGTGAAAGGTGTC+TGG | - | chr7.2:29664089-29664108 | MS.gene27639:CDS | 40.0% |
| AGGATACAATGGTGTGTCCA+TGG | + | chr7.2:29664404-29664423 | None:intergenic | 45.0% | |
| CAACCCAATGCTACGATGAA+AGG | - | chr7.2:29664511-29664530 | MS.gene27639:CDS | 45.0% | |
| GCGACTTAGAATGCCATACA+AGG | + | chr7.2:29664040-29664059 | None:intergenic | 45.0% | |
| TCATATGAGTCATCGCAAGG+AGG | + | chr7.2:29664441-29664460 | None:intergenic | 45.0% | |
| TCCTGATCCTCAAAGACCAA+TGG | - | chr7.2:29663977-29663996 | MS.gene27639:CDS | 45.0% | |
| TGTGAAGGATGGAAGCTTTC+GGG | - | chr7.2:29664848-29664867 | MS.gene27639:CDS | 45.0% | |
| TTGAGAGGTGGCAGACTAAT+GGG | + | chr7.2:29664198-29664217 | None:intergenic | 45.0% | |
| TTGAGGATCAGGATCATTGG+TGG | + | chr7.2:29663970-29663989 | None:intergenic | 45.0% | |
| TTTGAGAGGTGGCAGACTAA+TGG | + | chr7.2:29664199-29664218 | None:intergenic | 45.0% | |
| ! | CTGATATTTGCTGACAGCCA+TGG | - | chr7.2:29664384-29664403 | MS.gene27639:CDS | 45.0% |
| ! | CTTTCATCGTAGCATTGGGT+TGG | + | chr7.2:29664513-29664532 | None:intergenic | 45.0% |
| !! | AAAGAGCACGCCAACCATTT+TGG | - | chr7.2:29664313-29664332 | MS.gene27639:CDS | 45.0% |
| !! | ACCATTGGTCTTTGAGGATC+AGG | + | chr7.2:29663981-29664000 | None:intergenic | 45.0% |
| ACCGGGAAGAGATCCTTGTA+TGG | - | chr7.2:29664024-29664043 | MS.gene27639:CDS | 50.0% | |
| AGGTGTCTGGGCTCTTCATT+TGG | - | chr7.2:29664102-29664121 | MS.gene27639:CDS | 50.0% | |
| GCCATACAAGGATCTCTTCC+CGG | + | chr7.2:29664028-29664047 | None:intergenic | 50.0% | |
| GGGTCATATGAGTCATCGCA+AGG | + | chr7.2:29664444-29664463 | None:intergenic | 50.0% | |
| GTCTGGGCTCTTCATTTGGT+TGG | - | chr7.2:29664106-29664125 | MS.gene27639:CDS | 50.0% | |
| !! | TTGGTGTCGTGTGCAAGTCT+TGG | - | chr7.2:29663902-29663921 | MS.gene27639:CDS | 50.0% |
| AGAGGTGGCAGACTAATGGG+AGG | + | chr7.2:29664195-29664214 | None:intergenic | 55.0% | |
| TTGGAACTGGATGCCGAGAG+TGG | - | chr7.2:29664621-29664640 | MS.gene27639:CDS | 55.0% | |
| ! | AGGGCTTGTAATGGGGTCAG+CGG | + | chr7.2:29664244-29664263 | None:intergenic | 55.0% |
| ! | TGTAATGGGGTCAGCGGACA+AGG | + | chr7.2:29664238-29664257 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 29663811 | 29664935 | 29663811 | ID=MS.gene27639 |
| chr7.2 | mRNA | 29663811 | 29664935 | 29663811 | ID=MS.gene27639.t1;Parent=MS.gene27639 |
| chr7.2 | exon | 29663811 | 29664935 | 29663811 | ID=MS.gene27639.t1.exon1;Parent=MS.gene27639.t1 |
| chr7.2 | CDS | 29663811 | 29664935 | 29663811 | ID=cds.MS.gene27639.t1;Parent=MS.gene27639.t1 |
| Gene Sequence |
| Protein sequence |