Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94237.t1 | RHN57146.1 | 92.1 | 254 | 20 | 0 | 74 | 327 | 1 | 254 | 1.10E-135 | 493 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94237.t1 | Q6DR20 | 23.4 | 398 | 244 | 16 | 3 | 354 | 2 | 384 | 1.5e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94237.t1 | A0A396HUX2 | 92.1 | 254 | 20 | 0 | 74 | 327 | 1 | 254 | 8.2e-136 | 493.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene94237 | 0.874072 | 8.99E-68 | -1.69E-46 |
| MS.gene054174 | MS.gene94237 | 0.839084 | 1.96E-57 | -1.69E-46 |
| MS.gene054175 | MS.gene94237 | 0.833315 | 5.72E-56 | -1.69E-46 |
| MS.gene055952 | MS.gene94237 | 0.835462 | 1.65E-56 | -1.69E-46 |
| MS.gene058294 | MS.gene94237 | 0.810898 | 9.17E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene94237 | 0.803911 | 2.78E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94237.t1 | MTR_5g082780 | 91.342 | 231 | 20 | 0 | 98 | 328 | 1 | 231 | 3.71e-155 | 435 |
| MS.gene94237.t1 | MTR_5g082770 | 64.505 | 293 | 90 | 6 | 1 | 283 | 1 | 289 | 2.03e-120 | 349 |
| MS.gene94237.t1 | MTR_5g038260 | 45.692 | 383 | 180 | 10 | 1 | 359 | 3 | 381 | 1.27e-101 | 305 |
| MS.gene94237.t1 | MTR_1g064570 | 44.279 | 402 | 177 | 10 | 1 | 359 | 1 | 398 | 3.12e-101 | 305 |
| MS.gene94237.t1 | MTR_5g038230 | 46.257 | 374 | 165 | 10 | 1 | 359 | 1 | 353 | 4.06e-99 | 298 |
| MS.gene94237.t1 | MTR_1g108740 | 43.164 | 373 | 162 | 10 | 4 | 359 | 5 | 344 | 1.61e-85 | 262 |
| MS.gene94237.t1 | MTR_7g077620 | 41.919 | 396 | 164 | 14 | 2 | 359 | 3 | 370 | 8.12e-76 | 239 |
| MS.gene94237.t1 | MTR_7g077660 | 42.132 | 394 | 160 | 18 | 3 | 359 | 4 | 366 | 2.19e-75 | 237 |
| MS.gene94237.t1 | MTR_7g077650 | 40.657 | 396 | 167 | 18 | 2 | 358 | 3 | 369 | 1.06e-72 | 230 |
| MS.gene94237.t1 | MTR_1g016150 | 44.737 | 190 | 68 | 6 | 4 | 171 | 5 | 179 | 2.92e-41 | 145 |
| MS.gene94237.t1 | MTR_1g016150 | 48.718 | 78 | 31 | 1 | 219 | 296 | 168 | 236 | 2.13e-14 | 72.4 |
| MS.gene94237.t1 | MTR_7g076100 | 40.408 | 245 | 112 | 9 | 133 | 359 | 70 | 298 | 1.49e-38 | 139 |
| MS.gene94237.t1 | MTR_7g076110 | 35.161 | 310 | 158 | 11 | 73 | 359 | 22 | 311 | 3.09e-38 | 139 |
| MS.gene94237.t1 | MTR_1g108750 | 45.033 | 151 | 55 | 3 | 1 | 150 | 1 | 124 | 7.04e-27 | 103 |
| MS.gene94237.t1 | MTR_3g114990 | 25.123 | 406 | 238 | 16 | 1 | 357 | 20 | 408 | 5.30e-18 | 85.1 |
| MS.gene94237.t1 | MTR_3g114970 | 26.329 | 395 | 211 | 23 | 1 | 357 | 1 | 353 | 4.18e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94237.t1 | AT2G17036 | 23.618 | 398 | 243 | 16 | 3 | 354 | 1 | 383 | 1.02e-12 | 69.3 |
| MS.gene94237.t1 | AT2G17036 | 23.618 | 398 | 243 | 16 | 3 | 354 | 2 | 384 | 1.08e-12 | 69.3 |
Find 70 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATCTCATTGGAAATT+TGG | 0.118149 | 5.4:+65493986 | None:intergenic |
| TAGCATTTGTTTAAACTTTC+CGG | 0.160572 | 5.4:+65494267 | None:intergenic |
| GGAACTAGATTGGGCAAATT+TGG | 0.170985 | 5.4:-65495049 | MS.gene94237:CDS |
| TAAGAATTTGGCAATTTAAA+TGG | 0.183830 | 5.4:+65494826 | None:intergenic |
| TAATCATTTGGTCTTGTTAT+AGG | 0.187600 | 5.4:+65494631 | None:intergenic |
| TACAAACATCTTTCTGTTCT+TGG | 0.199967 | 5.4:+65494874 | None:intergenic |
| AGCAGCAGCCACCACCTTTC+TGG | 0.214961 | 5.4:-65494015 | MS.gene94237:CDS |
| TTTATGGATGTTATGTTCTA+TGG | 0.218295 | 5.4:-65494505 | MS.gene94237:CDS |
| CAAATATGGTAATAAGAATT+TGG | 0.251801 | 5.4:+65494814 | None:intergenic |
| GAGCTGGCATCATTCCTTTA+TGG | 0.256715 | 5.4:-65494521 | MS.gene94237:CDS |
| CAAATAGATCACATTTGTTT+TGG | 0.284203 | 5.4:-65494985 | MS.gene94237:CDS |
| GGCTAAATCCACAACAAATA+TGG | 0.289458 | 5.4:+65494800 | None:intergenic |
| AATCATTTGGTCTTGTTATA+GGG | 0.294407 | 5.4:+65494632 | None:intergenic |
| GATAACTCCAAATCCATTTC+AGG | 0.313372 | 5.4:-65494419 | MS.gene94237:CDS |
| AACAAGACCAAATGATTATA+TGG | 0.314220 | 5.4:-65494626 | MS.gene94237:CDS |
| ACTTGTGGTCCATTTCATAT+AGG | 0.341950 | 5.4:-65494100 | MS.gene94237:CDS |
| TCGAGGGTTGGAAGACTAAT+AGG | 0.372920 | 5.4:+65494709 | None:intergenic |
| GCTATGTCCTGAAATGGATT+TGG | 0.374010 | 5.4:+65494412 | None:intergenic |
| ACAAACATCTTTCTGTTCTT+GGG | 0.381418 | 5.4:+65494875 | None:intergenic |
| TGAAAAGCTATGTCCTGAAA+TGG | 0.396599 | 5.4:+65494406 | None:intergenic |
| GCAGCAGCCACCACCTTTCT+GGG | 0.398247 | 5.4:-65494014 | MS.gene94237:CDS |
| GCCGCAACCATATAATCATT+TGG | 0.404338 | 5.4:+65494619 | None:intergenic |
| TGGTTAGAATGGAACTAGAT+TGG | 0.415806 | 5.4:-65495059 | None:intergenic |
| TGATTTAATTCTTGATAAGT+TGG | 0.416195 | 5.4:-65495013 | MS.gene94237:CDS |
| CTTGTGGTCCATTTCATATA+GGG | 0.417934 | 5.4:-65494099 | MS.gene94237:CDS |
| GGTTAGAATGGAACTAGATT+GGG | 0.421888 | 5.4:-65495058 | None:intergenic |
| GCAATTCACACTAGCATTCA+TGG | 0.422023 | 5.4:-65494598 | MS.gene94237:CDS |
| TTATATATCCCTATATGAAA+TGG | 0.424795 | 5.4:+65494091 | None:intergenic |
| CGAATTCAAACTTGTACACT+TGG | 0.434747 | 5.4:+65494299 | None:intergenic |
| TTATCTTGTGAAATCATTAG+AGG | 0.436221 | 5.4:-65494368 | MS.gene94237:CDS |
| ATAGGAGCAACATTCTTAGA+AGG | 0.444870 | 5.4:+65494727 | None:intergenic |
| ATAGAACATAACATCCATAA+AGG | 0.458967 | 5.4:+65494507 | None:intergenic |
| AGAAGGATGCAATAGTGTTA+TGG | 0.460688 | 5.4:+65494744 | None:intergenic |
| TGTTCTTGGGATCATTAGCA+TGG | 0.462460 | 5.4:+65494888 | None:intergenic |
| ATGCTAAAGCTTGAGAGTCT+TGG | 0.465110 | 5.4:-65494250 | MS.gene94237:CDS |
| TAAAAGCGGGCGAACCATGC+TGG | 0.470666 | 5.4:-65494561 | MS.gene94237:CDS |
| GTATCAGCTTCATACTTCTC+CGG | 0.473456 | 5.4:-65494187 | MS.gene94237:CDS |
| TTGGTGCCGTGTGCAAGAAT+TGG | 0.477626 | 5.4:-65494966 | MS.gene94237:CDS |
| AACCATGCTGGACTTATGTA+TGG | 0.478737 | 5.4:-65494549 | MS.gene94237:CDS |
| TCTTATTACCATATTTGTTG+TGG | 0.483010 | 5.4:-65494808 | MS.gene94237:CDS |
| TTTATCTGAGGTCGGGTACA+AGG | 0.517119 | 5.4:-65494671 | MS.gene94237:CDS |
| ACCAAATGATTATATGGTTG+CGG | 0.517425 | 5.4:-65494620 | MS.gene94237:CDS |
| GTTGTGGATTTAGCCATGGT+TGG | 0.523421 | 5.4:-65494792 | MS.gene94237:CDS |
| TAAAGGAATGATGCCAGCTC+GGG | 0.530279 | 5.4:+65494524 | None:intergenic |
| ATACAAGTTTATCTGAGGTC+GGG | 0.533775 | 5.4:-65494678 | MS.gene94237:CDS |
| GGGATATATAATGTAAGAGA+TGG | 0.535003 | 5.4:-65494079 | MS.gene94237:CDS |
| CTTATGTATGGATCCCGAGC+TGG | 0.538699 | 5.4:-65494537 | MS.gene94237:CDS |
| TATACAAGTTTATCTGAGGT+CGG | 0.543905 | 5.4:-65494679 | MS.gene94237:CDS |
| ATTTGTTGTGGATTTAGCCA+TGG | 0.546254 | 5.4:-65494796 | MS.gene94237:CDS |
| ATGGATGTTATGTTCTATGG+AGG | 0.548376 | 5.4:-65494502 | MS.gene94237:CDS |
| AAATTTGGTAAAACCCAGAA+AGG | 0.548520 | 5.4:+65494001 | None:intergenic |
| GTTCTTGGGATCATTAGCAT+GGG | 0.554796 | 5.4:+65494889 | None:intergenic |
| TTTGAATTCGATGCTCAGAC+CGG | 0.560810 | 5.4:-65494286 | MS.gene94237:CDS |
| TATCTTGTGAAATCATTAGA+GGG | 0.568311 | 5.4:-65494367 | MS.gene94237:CDS |
| ATAAAGGAATGATGCCAGCT+CGG | 0.569621 | 5.4:+65494523 | None:intergenic |
| GTGAAGATTATGATGATCAG+AGG | 0.588224 | 5.4:+65494054 | None:intergenic |
| GGTAAAACCCAGAAAGGTGG+TGG | 0.590899 | 5.4:+65494007 | None:intergenic |
| CTATTGTTGCAAGCCAACCA+TGG | 0.611822 | 5.4:+65494779 | None:intergenic |
| AACTTGTATATGATCGATCG+AGG | 0.611957 | 5.4:+65494692 | None:intergenic |
| AAGTTAGATTGTGTAACTTG+TGG | 0.613074 | 5.4:-65494115 | MS.gene94237:CDS |
| ATCATATACAAGTTTATCTG+AGG | 0.615631 | 5.4:-65494683 | MS.gene94237:CDS |
| GTATATGATCGATCGAGGGT+TGG | 0.616455 | 5.4:+65494697 | None:intergenic |
| AGCTTAACCATCAAAATCAG+CGG | 0.617597 | 5.4:-65494930 | MS.gene94237:CDS |
| AATCATTAGAGGGAGACTTG+TGG | 0.640892 | 5.4:-65494357 | MS.gene94237:CDS |
| TTTGGTAAAACCCAGAAAGG+TGG | 0.643098 | 5.4:+65494004 | None:intergenic |
| TAATCGCCAATTCTTGCACA+CGG | 0.645036 | 5.4:+65494960 | None:intergenic |
| ATCCATACATAAGTCCAGCA+TGG | 0.649735 | 5.4:+65494547 | None:intergenic |
| TATGTTGCGAGTAAATATCA+CGG | 0.663367 | 5.4:-65494472 | MS.gene94237:CDS |
| ACTTGTATATGATCGATCGA+GGG | 0.674359 | 5.4:+65494693 | None:intergenic |
| ATTAGAGGGAGACTTGTGGA+TGG | 0.690554 | 5.4:-65494353 | MS.gene94237:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATGGATACATTTTTT+TGG | + | chr5.4:65494208-65494227 | None:intergenic | 15.0% |
| !! | CAAATATGGTAATAAGAATT+TGG | + | chr5.4:65494234-65494253 | None:intergenic | 20.0% |
| !! | TAAGAATTTGGCAATTTAAA+TGG | + | chr5.4:65494222-65494241 | None:intergenic | 20.0% |
| !! | TGATTTAATTCTTGATAAGT+TGG | - | chr5.4:65494032-65494051 | MS.gene94237:CDS | 20.0% |
| !! | TTATATATCCCTATATGAAA+TGG | + | chr5.4:65494957-65494976 | None:intergenic | 20.0% |
| ! | AACAAGACCAAATGATTATA+TGG | - | chr5.4:65494419-65494438 | MS.gene94237:CDS | 25.0% |
| ! | ATAGAACATAACATCCATAA+AGG | + | chr5.4:65494541-65494560 | None:intergenic | 25.0% |
| ! | ATCATATACAAGTTTATCTG+AGG | - | chr5.4:65494362-65494381 | MS.gene94237:CDS | 25.0% |
| ! | TAGCATTTGTTTAAACTTTC+CGG | + | chr5.4:65494781-65494800 | None:intergenic | 25.0% |
| ! | TATCTTGTGAAATCATTAGA+GGG | - | chr5.4:65494678-65494697 | MS.gene94237:CDS | 25.0% |
| ! | TTATCTTGTGAAATCATTAG+AGG | - | chr5.4:65494677-65494696 | MS.gene94237:CDS | 25.0% |
| ! | TTTATGGATGTTATGTTCTA+TGG | - | chr5.4:65494540-65494559 | MS.gene94237:CDS | 25.0% |
| !! | ACGTTTCGATTTTATAAAAG+CGG | - | chr5.4:65494470-65494489 | MS.gene94237:CDS | 25.0% |
| !! | CAAATAGATCACATTTGTTT+TGG | - | chr5.4:65494060-65494079 | MS.gene94237:CDS | 25.0% |
| !! | GGTATAGTATCTTTTAATCT+TGG | - | chr5.4:65494594-65494613 | MS.gene94237:CDS | 25.0% |
| !! | TCTTATTACCATATTTGTTG+TGG | - | chr5.4:65494237-65494256 | MS.gene94237:CDS | 25.0% |
| !!! | AATCATTTGGTCTTGTTATA+GGG | + | chr5.4:65494416-65494435 | None:intergenic | 25.0% |
| !!! | TAATCATTTGGTCTTGTTAT+AGG | + | chr5.4:65494417-65494436 | None:intergenic | 25.0% |
| AAATTTGGTAAAACCCAGAA+AGG | + | chr5.4:65495047-65495066 | None:intergenic | 30.0% | |
| AAGTTAGATTGTGTAACTTG+TGG | - | chr5.4:65494930-65494949 | MS.gene94237:CDS | 30.0% | |
| ACAAACATCTTTCTGTTCTT+GGG | + | chr5.4:65494173-65494192 | None:intergenic | 30.0% | |
| ACCAAATGATTATATGGTTG+CGG | - | chr5.4:65494425-65494444 | MS.gene94237:CDS | 30.0% | |
| GGGATATATAATGTAAGAGA+TGG | - | chr5.4:65494966-65494985 | MS.gene94237:CDS | 30.0% | |
| TACAAACATCTTTCTGTTCT+TGG | + | chr5.4:65494174-65494193 | None:intergenic | 30.0% | |
| TATGTTGCGAGTAAATATCA+CGG | - | chr5.4:65494573-65494592 | MS.gene94237:CDS | 30.0% | |
| ! | CGTTTCGATTTTATAAAAGC+GGG | - | chr5.4:65494471-65494490 | MS.gene94237:CDS | 30.0% |
| ! | CTTTTAATCTTGGTCATAAG+AGG | - | chr5.4:65494604-65494623 | MS.gene94237:CDS | 30.0% |
| ! | TATACAAGTTTATCTGAGGT+CGG | - | chr5.4:65494366-65494385 | MS.gene94237:CDS | 30.0% |
| !! | GGAGACAATGTTTTATTCTT+GGG | - | chr5.4:65494816-65494835 | MS.gene94237:CDS | 30.0% |
| !! | TGGAGACAATGTTTTATTCT+TGG | - | chr5.4:65494815-65494834 | MS.gene94237:CDS | 30.0% |
| !!! | TGAATCTTTTTTCAGACAAC+CGG | + | chr5.4:65494880-65494899 | None:intergenic | 30.0% |
| AACTTGTATATGATCGATCG+AGG | + | chr5.4:65494356-65494375 | None:intergenic | 35.0% | |
| ACTTGTATATGATCGATCGA+GGG | + | chr5.4:65494355-65494374 | None:intergenic | 35.0% | |
| ACTTGTGGTCCATTTCATAT+AGG | - | chr5.4:65494945-65494964 | MS.gene94237:CDS | 35.0% | |
| AGAAGGATGCAATAGTGTTA+TGG | + | chr5.4:65494304-65494323 | None:intergenic | 35.0% | |
| AGCTTAACCATCAAAATCAG+CGG | - | chr5.4:65494115-65494134 | MS.gene94237:CDS | 35.0% | |
| ATAGGAGCAACATTCTTAGA+AGG | + | chr5.4:65494321-65494340 | None:intergenic | 35.0% | |
| ATGGATGTTATGTTCTATGG+AGG | - | chr5.4:65494543-65494562 | MS.gene94237:CDS | 35.0% | |
| CGAATTCAAACTTGTACACT+TGG | + | chr5.4:65494749-65494768 | None:intergenic | 35.0% | |
| CTTGTGGTCCATTTCATATA+GGG | - | chr5.4:65494946-65494965 | MS.gene94237:CDS | 35.0% | |
| GATAACTCCAAATCCATTTC+AGG | - | chr5.4:65494626-65494645 | MS.gene94237:CDS | 35.0% | |
| GGCTAAATCCACAACAAATA+TGG | + | chr5.4:65494248-65494267 | None:intergenic | 35.0% | |
| GTGAAGATTATGATGATCAG+AGG | + | chr5.4:65494994-65495013 | None:intergenic | 35.0% | |
| TGAAAAGCTATGTCCTGAAA+TGG | + | chr5.4:65494642-65494661 | None:intergenic | 35.0% | |
| ! | ATACAAGTTTATCTGAGGTC+GGG | - | chr5.4:65494367-65494386 | MS.gene94237:CDS | 35.0% |
| ! | GCTTTTCATGGAAGGTTTAA+AGG | - | chr5.4:65494654-65494673 | MS.gene94237:CDS | 35.0% |
| ! | TTTCAGGACATAGCTTTTCA+TGG | - | chr5.4:65494642-65494661 | MS.gene94237:CDS | 35.0% |
| !! | ATTTGTTGTGGATTTAGCCA+TGG | - | chr5.4:65494249-65494268 | MS.gene94237:CDS | 35.0% |
| !!! | TTCTAAACCGCTGATTTTGA+TGG | + | chr5.4:65494125-65494144 | None:intergenic | 35.0% |
| AACCATGCTGGACTTATGTA+TGG | - | chr5.4:65494496-65494515 | MS.gene94237:CDS | 40.0% | |
| AATCATTAGAGGGAGACTTG+TGG | - | chr5.4:65494688-65494707 | MS.gene94237:CDS | 40.0% | |
| ATAAAGGAATGATGCCAGCT+CGG | + | chr5.4:65494525-65494544 | None:intergenic | 40.0% | |
| ATCCATACATAAGTCCAGCA+TGG | + | chr5.4:65494501-65494520 | None:intergenic | 40.0% | |
| ATGCTAAAGCTTGAGAGTCT+TGG | - | chr5.4:65494795-65494814 | MS.gene94237:CDS | 40.0% | |
| GCAATTCACACTAGCATTCA+TGG | - | chr5.4:65494447-65494466 | MS.gene94237:CDS | 40.0% | |
| GCCGCAACCATATAATCATT+TGG | + | chr5.4:65494429-65494448 | None:intergenic | 40.0% | |
| GGAACTAGATTGGGCAAATT+TGG | - | chr5.4:65493996-65494015 | MS.gene94237:CDS | 40.0% | |
| GTATCAGCTTCATACTTCTC+CGG | - | chr5.4:65494858-65494877 | MS.gene94237:CDS | 40.0% | |
| GTTCTTGGGATCATTAGCAT+GGG | + | chr5.4:65494159-65494178 | None:intergenic | 40.0% | |
| TAATCGCCAATTCTTGCACA+CGG | + | chr5.4:65494088-65494107 | None:intergenic | 40.0% | |
| TGTTCTTGGGATCATTAGCA+TGG | + | chr5.4:65494160-65494179 | None:intergenic | 40.0% | |
| TTTGAATTCGATGCTCAGAC+CGG | - | chr5.4:65494759-65494778 | MS.gene94237:CDS | 40.0% | |
| TTTGGTAAAACCCAGAAAGG+TGG | + | chr5.4:65495044-65495063 | None:intergenic | 40.0% | |
| ! | AGGACATAGCTTTTCATGGA+AGG | - | chr5.4:65494646-65494665 | MS.gene94237:CDS | 40.0% |
| ! | GCTATGTCCTGAAATGGATT+TGG | + | chr5.4:65494636-65494655 | None:intergenic | 40.0% |
| ATTAGAGGGAGACTTGTGGA+TGG | - | chr5.4:65494692-65494711 | MS.gene94237:CDS | 45.0% | |
| CTATTGTTGCAAGCCAACCA+TGG | + | chr5.4:65494269-65494288 | None:intergenic | 45.0% | |
| GAGCTGGCATCATTCCTTTA+TGG | - | chr5.4:65494524-65494543 | MS.gene94237:CDS | 45.0% | |
| GTATATGATCGATCGAGGGT+TGG | + | chr5.4:65494351-65494370 | None:intergenic | 45.0% | |
| GTTGTGGATTTAGCCATGGT+TGG | - | chr5.4:65494253-65494272 | MS.gene94237:CDS | 45.0% | |
| TAAAGGAATGATGCCAGCTC+GGG | + | chr5.4:65494524-65494543 | None:intergenic | 45.0% | |
| TCGAGGGTTGGAAGACTAAT+AGG | + | chr5.4:65494339-65494358 | None:intergenic | 45.0% | |
| ! | TTTATCTGAGGTCGGGTACA+AGG | - | chr5.4:65494374-65494393 | MS.gene94237:CDS | 45.0% |
| CTTATGTATGGATCCCGAGC+TGG | - | chr5.4:65494508-65494527 | MS.gene94237:CDS | 50.0% | |
| GGTAAAACCCAGAAAGGTGG+TGG | + | chr5.4:65495041-65495060 | None:intergenic | 50.0% | |
| !! | TTGGTGCCGTGTGCAAGAAT+TGG | - | chr5.4:65494079-65494098 | MS.gene94237:CDS | 50.0% |
| TAAAAGCGGGCGAACCATGC+TGG | - | chr5.4:65494484-65494503 | MS.gene94237:CDS | 55.0% | |
| AGCAGCAGCCACCACCTTTC+TGG | - | chr5.4:65495030-65495049 | MS.gene94237:CDS | 60.0% | |
| GCAGCAGCCACCACCTTTCT+GGG | - | chr5.4:65495031-65495050 | MS.gene94237:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 65493994 | 65495073 | 65493994 | ID=MS.gene94237 |
| chr5.4 | mRNA | 65493994 | 65495073 | 65493994 | ID=MS.gene94237.t1;Parent=MS.gene94237 |
| chr5.4 | exon | 65493994 | 65495073 | 65493994 | ID=MS.gene94237.t1.exon1;Parent=MS.gene94237.t1 |
| chr5.4 | CDS | 65493994 | 65495073 | 65493994 | ID=cds.MS.gene94237.t1;Parent=MS.gene94237.t1 |
| Gene Sequence |
| Protein sequence |
