Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49592.t1 | XP_003613576.1 | 86.9 | 382 | 49 | 1 | 1 | 382 | 3 | 383 | 3.00E-203 | 717.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49592.t1 | G7K9R3 | 86.9 | 382 | 49 | 1 | 1 | 382 | 3 | 383 | 2.2e-203 | 717.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49592.t1 | MTR_5g038260 | 86.911 | 382 | 49 | 1 | 1 | 382 | 3 | 383 | 0.0 | 701 |
MS.gene49592.t1 | MTR_5g038230 | 79.581 | 382 | 51 | 3 | 1 | 382 | 1 | 355 | 0.0 | 622 |
MS.gene49592.t1 | MTR_1g064570 | 48.515 | 404 | 182 | 7 | 1 | 382 | 1 | 400 | 5.28e-128 | 374 |
MS.gene49592.t1 | MTR_1g108740 | 43.750 | 384 | 169 | 10 | 2 | 380 | 3 | 344 | 4.65e-96 | 290 |
MS.gene49592.t1 | MTR_5g082770 | 49.351 | 308 | 134 | 11 | 1 | 305 | 1 | 289 | 1.85e-82 | 254 |
MS.gene49592.t1 | MTR_7g077620 | 41.772 | 395 | 181 | 15 | 4 | 379 | 5 | 369 | 5.44e-77 | 243 |
MS.gene49592.t1 | MTR_7g077660 | 41.206 | 398 | 181 | 15 | 4 | 382 | 5 | 368 | 4.19e-74 | 235 |
MS.gene49592.t1 | MTR_7g077650 | 39.609 | 409 | 176 | 18 | 4 | 382 | 5 | 372 | 6.14e-71 | 227 |
MS.gene49592.t1 | MTR_5g082780 | 43.083 | 253 | 123 | 7 | 103 | 353 | 1 | 234 | 1.65e-55 | 182 |
MS.gene49592.t1 | MTR_1g016150 | 45.263 | 190 | 78 | 8 | 2 | 178 | 3 | 179 | 9.28e-43 | 149 |
MS.gene49592.t1 | MTR_1g016150 | 53.623 | 69 | 25 | 1 | 250 | 318 | 175 | 236 | 4.44e-14 | 71.6 |
MS.gene49592.t1 | MTR_7g076110 | 34.921 | 315 | 174 | 11 | 77 | 382 | 21 | 313 | 1.95e-40 | 145 |
MS.gene49592.t1 | MTR_7g076100 | 40.316 | 253 | 120 | 11 | 140 | 382 | 69 | 300 | 5.22e-38 | 139 |
MS.gene49592.t1 | MTR_7g076100 | 60.000 | 50 | 19 | 1 | 4 | 53 | 6 | 54 | 1.23e-11 | 65.5 |
MS.gene49592.t1 | MTR_1g108750 | 43.478 | 161 | 51 | 4 | 1 | 158 | 1 | 124 | 9.24e-27 | 103 |
MS.gene49592.t1 | MTR_6g023955 | 60.714 | 84 | 32 | 1 | 135 | 218 | 69 | 151 | 4.18e-25 | 101 |
MS.gene49592.t1 | MTR_6g023955 | 57.377 | 61 | 26 | 0 | 321 | 381 | 149 | 209 | 4.34e-18 | 82.4 |
MS.gene49592.t1 | MTR_3g114970 | 25.389 | 386 | 245 | 14 | 1 | 377 | 1 | 352 | 1.82e-19 | 89.0 |
MS.gene49592.t1 | MTR_3g114990 | 25.952 | 420 | 236 | 18 | 1 | 377 | 20 | 407 | 6.17e-18 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 81 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTACATTGCTCCTAAAT+TGG | 0.222050 | 5.1:+28863212 | None:intergenic |
TAATCATTTGGACTTGTTAT+AGG | 0.239358 | 5.1:+28862911 | None:intergenic |
TCTAATCAATTCCACTTAAA+AGG | 0.241393 | 5.1:+28862224 | None:intergenic |
ATGCAAGACACTGACCATTT+TGG | 0.251355 | 5.1:-28862815 | MS.gene49592:CDS |
TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5.1:-28862844 | MS.gene49592:CDS |
GATGATAAATTCTTCGTCTA+TGG | 0.282940 | 5.1:+28863051 | None:intergenic |
GGTGGTCGTGTTGATGATTA+AGG | 0.291776 | 5.1:+28863233 | None:intergenic |
CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5.1:+28862677 | None:intergenic |
ATCAACACGACCACCAATTT+AGG | 0.305762 | 5.1:-28863225 | MS.gene49592:CDS |
TTTGTCAAAAGTTGAGAGTT+TGG | 0.306004 | 5.1:-28862489 | MS.gene49592:CDS |
TTAAGAATTGTCAATTCTAA+TGG | 0.308529 | 5.1:+28863115 | None:intergenic |
TCAATCATTGGCAAACTAAT+AGG | 0.312864 | 5.1:+28862998 | None:intergenic |
ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5.1:+28863016 | None:intergenic |
AATGGATACACTCTATTTGC+AGG | 0.334507 | 5.1:+28863133 | None:intergenic |
TGAGAAATATGAAGCTGATA+TGG | 0.338929 | 5.1:+28862427 | None:intergenic |
TTGAACCAATTGATCACATT+TGG | 0.344806 | 5.1:-28863294 | MS.gene49592:CDS |
ACAAGTACTTAAGTTGGAAT+TGG | 0.345955 | 5.1:-28862537 | MS.gene49592:CDS |
AACGTAAAACATGGAAGTTT+TGG | 0.351299 | 5.1:-28862308 | MS.gene49592:CDS |
CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5.1:-28863289 | MS.gene49592:CDS |
TTGTCAAAAGTTGAGAGTTT+GGG | 0.367643 | 5.1:-28862488 | MS.gene49592:CDS |
GCATAACCATGGAGCGAGAT+TGG | 0.373158 | 5.1:-28863363 | None:intergenic |
CCTTTGAAGTGAGGTTTGTA+AGG | 0.384751 | 5.1:+28862275 | None:intergenic |
TTGTTATTCAAGTGACCCTT+CGG | 0.395653 | 5.1:-28862717 | MS.gene49592:CDS |
CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5.1:+28863289 | None:intergenic |
TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5.1:-28862630 | MS.gene49592:CDS |
CATTACATTCTACAATGGTT+TGG | 0.419262 | 5.1:-28862783 | MS.gene49592:CDS |
GCTGCAACCACATAATCATT+TGG | 0.420868 | 5.1:+28862899 | None:intergenic |
TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5.1:+28862801 | None:intergenic |
TTCTTTACAAGTACTTAAGT+TGG | 0.428096 | 5.1:-28862543 | MS.gene49592:CDS |
TTTCTCAAGTTATCTACAAA+AGG | 0.428648 | 5.1:-28862411 | MS.gene49592:CDS |
AAAAGGTGGCACAACCCATA+TGG | 0.429129 | 5.1:+28862241 | None:intergenic |
AAGGTATGGCACCTCCCATA+TGG | 0.431844 | 5.1:-28862256 | MS.gene49592:CDS |
TTCAAGTGACCCTTCGGGTA+TGG | 0.433703 | 5.1:-28862711 | MS.gene49592:CDS |
TGGTGAGAAGGTTTATAAGT+AGG | 0.439223 | 5.1:-28862592 | MS.gene49592:CDS |
TGTTATTCAAGTGACCCTTC+GGG | 0.440936 | 5.1:-28862716 | MS.gene49592:CDS |
GGTGAGAAGGTTTATAAGTA+GGG | 0.448283 | 5.1:-28862591 | MS.gene49592:CDS |
CATAACCATGGAGCGAGATT+GGG | 0.451858 | 5.1:-28863362 | None:intergenic |
TCAAAAGGACCTCTAGGATA+AGG | 0.452966 | 5.1:+28862344 | None:intergenic |
GAATGATAAACATCAATCAT+TGG | 0.457445 | 5.1:+28862986 | None:intergenic |
ACGAAGAATTTATCATCAGT+TGG | 0.458286 | 5.1:-28863045 | MS.gene49592:CDS |
GGTTGCGAGCCAGCCATGAC+TGG | 0.461953 | 5.1:+28863072 | None:intergenic |
GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5.1:-28862604 | MS.gene49592:CDS |
GTTGTGGCTCCAGTCATGGC+TGG | 0.471336 | 5.1:-28863081 | MS.gene49592:CDS |
CGAAGAATTTATCATCAGTT+GGG | 0.479167 | 5.1:-28863044 | MS.gene49592:CDS |
GGACCTCTAGGATAAGGAAT+AGG | 0.482897 | 5.1:+28862350 | None:intergenic |
TTATATATTCCCATATCAAA+AGG | 0.509410 | 5.1:+28862329 | None:intergenic |
CCTTACAAACCTCACTTCAA+AGG | 0.511620 | 5.1:-28862275 | MS.gene49592:CDS |
AACAAGTCCAAATGATTATG+TGG | 0.518480 | 5.1:-28862906 | MS.gene49592:CDS |
CAAACCTCACTTCAAAGGTA+TGG | 0.525919 | 5.1:-28862270 | MS.gene49592:CDS |
CTTTGAAGTGAGGTTTGTAA+GGG | 0.530606 | 5.1:+28862276 | None:intergenic |
AGGTATGGCACCTCCCATAT+GGG | 0.532239 | 5.1:-28862255 | MS.gene49592:CDS |
AAAGGTGGCACAACCCATAT+GGG | 0.532965 | 5.1:+28862242 | None:intergenic |
GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5.1:+28862635 | None:intergenic |
CTTAACAACAAGAGATGTTG+TGG | 0.538941 | 5.1:-28863097 | MS.gene49592:CDS |
TTACATTGCTCCTAAATTGG+TGG | 0.539694 | 5.1:+28863215 | None:intergenic |
TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5.1:-28862857 | MS.gene49592:CDS |
TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5.1:-28862626 | MS.gene49592:CDS |
GTTTGCCCAATCTCGCTCCA+TGG | 0.556567 | 5.1:+28863357 | None:intergenic |
TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5.1:+28862865 | None:intergenic |
CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5.1:+28862338 | None:intergenic |
TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5.1:-28862627 | MS.gene49592:CDS |
TTGGTTCTGTCTGCAAACAT+TGG | 0.564939 | 5.1:-28863270 | MS.gene49592:CDS |
TCTGAAGGGATCATTAGCAT+AGG | 0.577323 | 5.1:+28863190 | None:intergenic |
ATCGACATTACATTCTACAA+TGG | 0.582494 | 5.1:-28862788 | MS.gene49592:CDS |
TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5.1:+28862864 | None:intergenic |
TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5.1:-28862763 | MS.gene49592:CDS |
GGTGCCATACCTTTGAAGTG+AGG | 0.604787 | 5.1:+28862266 | None:intergenic |
AGGGTCAGAATGTGCAACAA+AGG | 0.604874 | 5.1:-28862572 | MS.gene49592:CDS |
AATCAATTCCACTTAAAAGG+TGG | 0.605003 | 5.1:+28862227 | None:intergenic |
GCATAAAGTTACTTTGTCAG+TGG | 0.605801 | 5.1:-28862936 | MS.gene49592:CDS |
AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5.1:-28862616 | MS.gene49592:CDS |
AGATGTTGTGGCTCCAGTCA+TGG | 0.606449 | 5.1:-28863085 | MS.gene49592:CDS |
GGAATATATAACGTAAAACA+TGG | 0.617818 | 5.1:-28862317 | MS.gene49592:CDS |
ATTCTCTGTTCCATACCCGA+AGG | 0.619525 | 5.1:+28862701 | None:intergenic |
GAACCTATTCCTTATCCTAG+AGG | 0.634791 | 5.1:-28862353 | MS.gene49592:CDS |
TTCTCTGTTCCATACCCGAA+GGG | 0.635821 | 5.1:+28862702 | None:intergenic |
GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5.1:-28862881 | MS.gene49592:CDS |
AATTGGATGACAAAGGTGAG+AGG | 0.664453 | 5.1:-28862520 | MS.gene49592:CDS |
ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5.1:-28862612 | MS.gene49592:CDS |
GGTGGCACAACCCATATGGG+AGG | 0.690978 | 5.1:+28862245 | None:intergenic |
AAGTTGGAATTGGATGACAA+AGG | 0.697370 | 5.1:-28862527 | MS.gene49592:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTTATTTAGTGAAATCAT+TGG | - | chr5.1:28862954-28862973 | MS.gene49592:CDS | 20.0% |
!! | TTAAGAATTGTCAATTCTAA+TGG | + | chr5.1:28862472-28862491 | None:intergenic | 20.0% |
!! | TTATATATTCCCATATCAAA+AGG | + | chr5.1:28863258-28863277 | None:intergenic | 20.0% |
! | CTTCTTTGTAACAAAACATT+TGG | + | chr5.1:28862910-28862929 | None:intergenic | 25.0% |
! | GAATGATAAACATCAATCAT+TGG | + | chr5.1:28862601-28862620 | None:intergenic | 25.0% |
! | GATTTCACTAAATAAGTAAG+TGG | + | chr5.1:28862952-28862971 | None:intergenic | 25.0% |
! | GGAATATATAACGTAAAACA+TGG | - | chr5.1:28863267-28863286 | MS.gene49592:CDS | 25.0% |
! | TATTTAGTGAAATCATTGGA+GGG | - | chr5.1:28862958-28862977 | MS.gene49592:CDS | 25.0% |
! | TTATTTAGTGAAATCATTGG+AGG | - | chr5.1:28862957-28862976 | MS.gene49592:CDS | 25.0% |
! | TTCTTTACAAGTACTTAAGT+TGG | - | chr5.1:28863041-28863060 | MS.gene49592:CDS | 25.0% |
! | TTTCTCAAGTTATCTACAAA+AGG | - | chr5.1:28863173-28863192 | MS.gene49592:CDS | 25.0% |
!!! | AATTTTTTATTTGTGGGTGA+CGG | - | chr5.1:28863123-28863142 | MS.gene49592:CDS | 25.0% |
!!! | AATTTTTTTCCAACGAGTTA+CGG | + | chr5.1:28862833-28862852 | None:intergenic | 25.0% |
!!! | GGAGACAATTTTTTATTTGT+GGG | - | chr5.1:28863117-28863136 | MS.gene49592:CDS | 25.0% |
!!! | TAATCATTTGGACTTGTTAT+AGG | + | chr5.1:28862676-28862695 | None:intergenic | 25.0% |
AACAAGTCCAAATGATTATG+TGG | - | chr5.1:28862678-28862697 | MS.gene49592:CDS | 30.0% | |
ACGAAGAATTTATCATCAGT+TGG | - | chr5.1:28862539-28862558 | MS.gene49592:CDS | 30.0% | |
ATCGACATTACATTCTACAA+TGG | - | chr5.1:28862796-28862815 | MS.gene49592:CDS | 30.0% | |
CATTACATTCTACAATGGTT+TGG | - | chr5.1:28862801-28862820 | MS.gene49592:CDS | 30.0% | |
CGAAGAATTTATCATCAGTT+GGG | - | chr5.1:28862540-28862559 | MS.gene49592:CDS | 30.0% | |
GATGATAAATTCTTCGTCTA+TGG | + | chr5.1:28862536-28862555 | None:intergenic | 30.0% | |
TAATGTCGATGAAACCAAAA+TGG | + | chr5.1:28862786-28862805 | None:intergenic | 30.0% | |
TCAATCATTGGCAAACTAAT+AGG | + | chr5.1:28862589-28862608 | None:intergenic | 30.0% | |
TGAGAAATATGAAGCTGATA+TGG | + | chr5.1:28863160-28863179 | None:intergenic | 30.0% | |
TTGAACCAATTGATCACATT+TGG | - | chr5.1:28862290-28862309 | MS.gene49592:CDS | 30.0% | |
TTGTCAAAAGTTGAGAGTTT+GGG | - | chr5.1:28863096-28863115 | MS.gene49592:CDS | 30.0% | |
TTTGTCAAAAGTTGAGAGTT+TGG | - | chr5.1:28863095-28863114 | MS.gene49592:CDS | 30.0% | |
! | AACGTAAAACATGGAAGTTT+TGG | - | chr5.1:28863276-28863295 | MS.gene49592:CDS | 30.0% |
!! | ACAAGTACTTAAGTTGGAAT+TGG | - | chr5.1:28863047-28863066 | MS.gene49592:CDS | 30.0% |
!!! | GGGAGACAATTTTTTATTTG+TGG | - | chr5.1:28863116-28863135 | MS.gene49592:CDS | 30.0% |
AAGTTGGAATTGGATGACAA+AGG | - | chr5.1:28863057-28863076 | MS.gene49592:CDS | 35.0% | |
AATGGATACACTCTATTTGC+AGG | + | chr5.1:28862454-28862473 | None:intergenic | 35.0% | |
ATAGGAGCAACATCCTTAAA+AGG | + | chr5.1:28862571-28862590 | None:intergenic | 35.0% | |
CCAAACCAAATGTGATCAAT+TGG | + | chr5.1:28862298-28862317 | None:intergenic | 35.0% | |
CCAATTGATCACATTTGGTT+TGG | - | chr5.1:28862295-28862314 | MS.gene49592:CDS | 35.0% | |
CTTAACAACAAGAGATGTTG+TGG | - | chr5.1:28862487-28862506 | MS.gene49592:CDS | 35.0% | |
GCATTACATTGCTCCTAAAT+TGG | + | chr5.1:28862375-28862394 | None:intergenic | 35.0% | |
GGTGAGAAGGTTTATAAGTA+GGG | - | chr5.1:28862993-28863012 | MS.gene49592:CDS | 35.0% | |
TGGTGAGAAGGTTTATAAGT+AGG | - | chr5.1:28862992-28863011 | MS.gene49592:CDS | 35.0% | |
TTACATTGCTCCTAAATTGG+TGG | + | chr5.1:28862372-28862391 | None:intergenic | 35.0% | |
! | GCATAAAGTTACTTTGTCAG+TGG | - | chr5.1:28862648-28862667 | MS.gene49592:CDS | 35.0% |
! | TAAAAGCAGGACAAGAGTTT+TGG | - | chr5.1:28862740-28862759 | MS.gene49592:CDS | 35.0% |
! | TTGTTATTCAAGTGACCCTT+CGG | - | chr5.1:28862867-28862886 | MS.gene49592:CDS | 35.0% |
! | TTTCTGGACTCTTTTCTGAA+GGG | + | chr5.1:28862411-28862430 | None:intergenic | 35.0% |
! | TTTTCTGGACTCTTTTCTGA+AGG | + | chr5.1:28862412-28862431 | None:intergenic | 35.0% |
!! | CTAAACAAACATCGCTTTTC+TGG | + | chr5.1:28862427-28862446 | None:intergenic | 35.0% |
!! | CTTTGAAGTGAGGTTTGTAA+GGG | + | chr5.1:28863311-28863330 | None:intergenic | 35.0% |
!! | TGTCTAGCTTTCATAAAAGC+AGG | - | chr5.1:28862727-28862746 | MS.gene49592:CDS | 35.0% |
AATTGGATGACAAAGGTGAG+AGG | - | chr5.1:28863064-28863083 | MS.gene49592:CDS | 40.0% | |
ATCAACACGACCACCAATTT+AGG | - | chr5.1:28862359-28862378 | MS.gene49592:CDS | 40.0% | |
CAAACCTCACTTCAAAGGTA+TGG | - | chr5.1:28863314-28863333 | MS.gene49592:CDS | 40.0% | |
CCTTACAAACCTCACTTCAA+AGG | - | chr5.1:28863309-28863328 | MS.gene49592:CDS | 40.0% | |
GAACCTATTCCTTATCCTAG+AGG | - | chr5.1:28863231-28863250 | MS.gene49592:CDS | 40.0% | |
GCTGCAACCACATAATCATT+TGG | + | chr5.1:28862688-28862707 | None:intergenic | 40.0% | |
TCTGAAGGGATCATTAGCAT+AGG | + | chr5.1:28862397-28862416 | None:intergenic | 40.0% | |
TGTTATTCAAGTGACCCTTC+GGG | - | chr5.1:28862868-28862887 | MS.gene49592:CDS | 40.0% | |
TTATGAAAGCTAGACAGCCA+CGG | + | chr5.1:28862723-28862742 | None:intergenic | 40.0% | |
! | ATGCAAGACACTGACCATTT+TGG | - | chr5.1:28862769-28862788 | MS.gene49592:CDS | 40.0% |
! | CAGTTGGGTGAATCCTTTTA+AGG | - | chr5.1:28862555-28862574 | MS.gene49592:CDS | 40.0% |
! | CCTAGAGGTCCTTTTGATAT+GGG | - | chr5.1:28863246-28863265 | MS.gene49592:CDS | 40.0% |
! | TCCTAGAGGTCCTTTTGATA+TGG | - | chr5.1:28863245-28863264 | MS.gene49592:CDS | 40.0% |
!! | CCTTTGAAGTGAGGTTTGTA+AGG | + | chr5.1:28863312-28863331 | None:intergenic | 40.0% |
!! | TCAAAAGGACCTCTAGGATA+AGG | + | chr5.1:28863243-28863262 | None:intergenic | 40.0% |
!! | TTGGTTCTGTCTGCAAACAT+TGG | - | chr5.1:28862314-28862333 | MS.gene49592:CDS | 40.0% |
AAAAGGTGGCACAACCCATA+TGG | + | chr5.1:28863346-28863365 | None:intergenic | 45.0% | |
AAAGGTGGCACAACCCATAT+GGG | + | chr5.1:28863345-28863364 | None:intergenic | 45.0% | |
AATCATTGGAGGGAGAGTTG+TGG | - | chr5.1:28862968-28862987 | MS.gene49592:CDS | 45.0% | |
AGGGTCAGAATGTGCAACAA+AGG | - | chr5.1:28863012-28863031 | MS.gene49592:CDS | 45.0% | |
ATTCTCTGTTCCATACCCGA+AGG | + | chr5.1:28862886-28862905 | None:intergenic | 45.0% | |
CCCATATCAAAAGGACCTCT+AGG | + | chr5.1:28863249-28863268 | None:intergenic | 45.0% | |
TATGAAAGCTAGACAGCCAC+GGG | + | chr5.1:28862722-28862741 | None:intergenic | 45.0% | |
TTCTCTGTTCCATACCCGAA+GGG | + | chr5.1:28862885-28862904 | None:intergenic | 45.0% | |
!! | GGACCTCTAGGATAAGGAAT+AGG | + | chr5.1:28863237-28863256 | None:intergenic | 45.0% |
!! | GGTGGTCGTGTTGATGATTA+AGG | + | chr5.1:28862354-28862373 | None:intergenic | 45.0% |
AAGGTATGGCACCTCCCATA+TGG | - | chr5.1:28863328-28863347 | MS.gene49592:CDS | 50.0% | |
AGATGTTGTGGCTCCAGTCA+TGG | - | chr5.1:28862499-28862518 | MS.gene49592:CDS | 50.0% | |
AGGTATGGCACCTCCCATAT+GGG | - | chr5.1:28863329-28863348 | MS.gene49592:CDS | 50.0% | |
ATTGGAGGGAGAGTTGTGGA+TGG | - | chr5.1:28862972-28862991 | MS.gene49592:CDS | 50.0% | |
GAGAGTTGTGGATGGTGAGA+AGG | - | chr5.1:28862980-28862999 | MS.gene49592:CDS | 50.0% | |
GCAGCAATTTACACTACCCG+TGG | - | chr5.1:28862703-28862722 | MS.gene49592:CDS | 50.0% | |
TGGTGTATGCCGTAACTCGT+TGG | - | chr5.1:28862821-28862840 | MS.gene49592:CDS | 50.0% | |
TTCAAGTGACCCTTCGGGTA+TGG | - | chr5.1:28862873-28862892 | MS.gene49592:CDS | 50.0% | |
! | GGGTTGTGCCACCTTTTAAG+TGG | - | chr5.1:28863349-28863368 | MS.gene49592:CDS | 50.0% |
!! | GGTGCCATACCTTTGAAGTG+AGG | + | chr5.1:28863321-28863340 | None:intergenic | 50.0% |
GGTGGCACAACCCATATGGG+AGG | + | chr5.1:28863342-28863361 | None:intergenic | 60.0% | |
GTTGTGGCTCCAGTCATGGC+TGG | - | chr5.1:28862503-28862522 | MS.gene49592:CDS | 60.0% | |
GGTTGCGAGCCAGCCATGAC+TGG | + | chr5.1:28862515-28862534 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 28862229 | 28863377 | 28862229 | ID=MS.gene49592 |
chr5.1 | mRNA | 28862229 | 28863377 | 28862229 | ID=MS.gene49592.t1;Parent=MS.gene49592 |
chr5.1 | exon | 28862229 | 28863377 | 28862229 | ID=MS.gene49592.t1.exon1;Parent=MS.gene49592.t1 |
chr5.1 | CDS | 28862229 | 28863377 | 28862229 | ID=cds.MS.gene49592.t1;Parent=MS.gene49592.t1 |
Gene Sequence |
Protein sequence |