Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29654.t1 | RHN57146.1 | 86.3 | 256 | 28 | 1 | 7 | 262 | 6 | 254 | 9.10E-123 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29654.t1 | A0A396HUX2 | 86.3 | 256 | 28 | 1 | 7 | 262 | 6 | 254 | 6.5e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene29654 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene29654 | 0.895183 | 1.22E-75 | -1.69E-46 |
| MS.gene05329 | MS.gene29654 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene29654 | 0.816345 | 5.80E-52 | -1.69E-46 |
| MS.gene054175 | MS.gene29654 | 0.80528 | 1.44E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene29654 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene059458 | MS.gene29654 | 0.824675 | 7.10E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29654.t1 | MTR_5g082780 | 90.909 | 231 | 21 | 0 | 33 | 263 | 1 | 231 | 5.03e-155 | 432 |
| MS.gene29654.t1 | MTR_5g082770 | 58.173 | 208 | 74 | 5 | 21 | 219 | 87 | 290 | 2.71e-68 | 214 |
| MS.gene29654.t1 | MTR_1g064570 | 40.248 | 323 | 144 | 10 | 10 | 294 | 87 | 398 | 4.27e-67 | 214 |
| MS.gene29654.t1 | MTR_5g038260 | 43.403 | 288 | 140 | 8 | 26 | 294 | 98 | 381 | 5.13e-64 | 206 |
| MS.gene29654.t1 | MTR_5g038230 | 43.369 | 279 | 127 | 8 | 26 | 294 | 96 | 353 | 4.29e-60 | 195 |
| MS.gene29654.t1 | MTR_1g108740 | 38.255 | 298 | 138 | 9 | 10 | 294 | 80 | 344 | 9.96e-51 | 171 |
| MS.gene29654.t1 | MTR_7g077620 | 40.753 | 292 | 122 | 12 | 26 | 294 | 107 | 370 | 1.63e-46 | 160 |
| MS.gene29654.t1 | MTR_7g077660 | 40.273 | 293 | 120 | 15 | 26 | 294 | 105 | 366 | 7.75e-45 | 156 |
| MS.gene29654.t1 | MTR_7g077650 | 39.041 | 292 | 126 | 14 | 26 | 293 | 106 | 369 | 1.66e-43 | 152 |
| MS.gene29654.t1 | MTR_7g076100 | 40.081 | 247 | 110 | 10 | 68 | 294 | 70 | 298 | 5.21e-38 | 136 |
| MS.gene29654.t1 | MTR_7g076110 | 35.616 | 292 | 145 | 11 | 26 | 294 | 40 | 311 | 6.67e-37 | 134 |
| MS.gene29654.t1 | MTR_3g114990 | 24.324 | 333 | 188 | 12 | 7 | 292 | 93 | 408 | 1.26e-14 | 73.9 |
| MS.gene29654.t1 | MTR_1g016150 | 48.718 | 78 | 31 | 1 | 154 | 231 | 168 | 236 | 1.76e-14 | 71.6 |
| MS.gene29654.t1 | MTR_1g016150 | 41.379 | 87 | 40 | 3 | 21 | 106 | 103 | 179 | 9.82e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATCTCATTGGAAATT+TGG | 0.118149 | 5.1:+64869935 | None:intergenic |
| TAGCATTTGTTTAAACTTTC+CGG | 0.160572 | 5.1:+64870216 | None:intergenic |
| CCGCACAAACGGCAGCTAAT+TGG | 0.162644 | 5.1:-64871508 | MS.gene29654:CDS |
| AGCAGCAGCCACCACCTTTC+TGG | 0.214961 | 5.1:-64869964 | MS.gene29654:CDS |
| TTTATGGATGTTATGTTCTA+TGG | 0.218295 | 5.1:-64870454 | MS.gene29654:CDS |
| GAGCTGGCATCATTCCTTTA+TGG | 0.256715 | 5.1:-64870470 | MS.gene29654:CDS |
| CGCACAAACGGCAGCTAATT+GGG | 0.262314 | 5.1:-64871507 | MS.gene29654:CDS |
| GATAACTCCAAATCCATTTC+AGG | 0.313372 | 5.1:-64870368 | MS.gene29654:CDS |
| AGCTGCCGTTTGTGCGGGTT+GGG | 0.315007 | 5.1:+64871514 | None:intergenic |
| ACTTGTGGTCCATTTCATAT+AGG | 0.341950 | 5.1:-64870049 | MS.gene29654:CDS |
| TCGAGGGTTGGAAGACTAAT+AGG | 0.372920 | 5.1:+64870658 | None:intergenic |
| GCTATGTCCTGAAATGGATT+TGG | 0.374010 | 5.1:+64870361 | None:intergenic |
| AGAAGGATGCAATATTGTTA+TGG | 0.378560 | 5.1:+64870693 | None:intergenic |
| CAATTAGCTGCCGTTTGTGC+GGG | 0.394257 | 5.1:+64871509 | None:intergenic |
| TGAAAAGCTATGTCCTGAAA+TGG | 0.396599 | 5.1:+64870355 | None:intergenic |
| GCAGCAGCCACCACCTTTCT+GGG | 0.398247 | 5.1:-64869963 | MS.gene29654:CDS |
| GCCGCAACCATATAATCATT+TGG | 0.404338 | 5.1:+64870568 | None:intergenic |
| CTTGTGGTCCATTTCATATA+GGG | 0.417934 | 5.1:-64870048 | MS.gene29654:CDS |
| GCAATTCACACTAGCATTCA+TGG | 0.422023 | 5.1:-64870547 | MS.gene29654:CDS |
| TTATATATCCCTATATGAAA+TGG | 0.424795 | 5.1:+64870040 | None:intergenic |
| CGAATTCAAACTTGTACACT+TGG | 0.434747 | 5.1:+64870248 | None:intergenic |
| TTATCTTGTGAAATCATTAG+AGG | 0.436221 | 5.1:-64870317 | MS.gene29654:CDS |
| ATAGGAGCAACATTCTTAGA+AGG | 0.444870 | 5.1:+64870676 | None:intergenic |
| TAGCTGCCGTTTGTGCGGGT+TGG | 0.458673 | 5.1:+64871513 | None:intergenic |
| ATAGAACATAACATCCATAA+AGG | 0.458967 | 5.1:+64870456 | None:intergenic |
| ATGCTAAAGCTTGAGAGTCT+TGG | 0.465110 | 5.1:-64870199 | MS.gene29654:CDS |
| TAAAAGCGGGCGAACCATGC+TGG | 0.470666 | 5.1:-64870510 | MS.gene29654:CDS |
| GTATCAGCTTCATACTTCTC+CGG | 0.473456 | 5.1:-64870136 | MS.gene29654:CDS |
| AACCATGCTGGACTTATGTA+TGG | 0.478737 | 5.1:-64870498 | MS.gene29654:CDS |
| ACGAGAGTTGCAGCCACCAT+TGG | 0.479084 | 5.1:+64871538 | None:intergenic |
| TCGTTCCCAACCCGCACAAA+CGG | 0.486112 | 5.1:-64871519 | MS.gene29654:CDS |
| ACCAAATGATTATATGGTTG+CGG | 0.497077 | 5.1:-64870569 | MS.gene29654:CDS |
| CCAATTAGCTGCCGTTTGTG+CGG | 0.497856 | 5.1:+64871508 | None:intergenic |
| TTTATCTGAGGTCGGGTACA+AGG | 0.517119 | 5.1:-64870620 | MS.gene29654:CDS |
| GTTGTGGATTTAGCCATGGT+TGG | 0.523421 | 5.1:-64870741 | MS.gene29654:intron |
| TAAAGGAATGATGCCAGCTC+GGG | 0.530279 | 5.1:+64870473 | None:intergenic |
| ATACAAGTTTATCTGAGGTC+GGG | 0.533775 | 5.1:-64870627 | MS.gene29654:CDS |
| GGGATATATAATGTAAGAGA+TGG | 0.535003 | 5.1:-64870028 | MS.gene29654:CDS |
| CTTATGTATGGATCCCGAGC+TGG | 0.538699 | 5.1:-64870486 | MS.gene29654:CDS |
| TATACAAGTTTATCTGAGGT+CGG | 0.543905 | 5.1:-64870628 | MS.gene29654:CDS |
| ATGGATGTTATGTTCTATGG+AGG | 0.548376 | 5.1:-64870451 | MS.gene29654:CDS |
| AAATTTGGTAAAACCCAGAA+AGG | 0.548520 | 5.1:+64869950 | None:intergenic |
| TTTGAATTCGATGCTCAGAC+CGG | 0.560810 | 5.1:-64870235 | MS.gene29654:CDS |
| TATCTTGTGAAATCATTAGA+GGG | 0.568311 | 5.1:-64870316 | MS.gene29654:CDS |
| ATAAAGGAATGATGCCAGCT+CGG | 0.569621 | 5.1:+64870472 | None:intergenic |
| GCACAAACGGCAGCTAATTG+GGG | 0.580346 | 5.1:-64871506 | MS.gene29654:CDS |
| GTGAAGATTATGATGATCAG+AGG | 0.588224 | 5.1:+64870003 | None:intergenic |
| GGTAAAACCCAGAAAGGTGG+TGG | 0.590899 | 5.1:+64869956 | None:intergenic |
| CAATTGTTGCAAGCCAACCA+TGG | 0.610569 | 5.1:+64870728 | None:intergenic |
| AACTTGTATATGATCGATCG+AGG | 0.611957 | 5.1:+64870641 | None:intergenic |
| AAGTTAGATTGTGTAACTTG+TGG | 0.613074 | 5.1:-64870064 | MS.gene29654:CDS |
| ATCATATACAAGTTTATCTG+AGG | 0.615631 | 5.1:-64870632 | MS.gene29654:CDS |
| GTATATGATCGATCGAGGGT+TGG | 0.616455 | 5.1:+64870646 | None:intergenic |
| AATCATTAGAGGGAGACTTG+TGG | 0.640892 | 5.1:-64870306 | MS.gene29654:CDS |
| TTTGGTAAAACCCAGAAAGG+TGG | 0.643098 | 5.1:+64869953 | None:intergenic |
| ATCCATACATAAGTCCAGCA+TGG | 0.649735 | 5.1:+64870496 | None:intergenic |
| TATGTTGCGAGTAAATATCA+CGG | 0.663367 | 5.1:-64870421 | MS.gene29654:CDS |
| ACTTGTATATGATCGATCGA+GGG | 0.674359 | 5.1:+64870642 | None:intergenic |
| ATTAGAGGGAGACTTGTGGA+TGG | 0.690554 | 5.1:-64870302 | MS.gene29654:CDS |
| TTAGCAGCACAACAACAGAG+AGG | 0.801839 | 5.1:-64871480 | MS.gene29654:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTTTTTTTTTAAAT+TGG | - | chr5.1:64870091-64870110 | MS.gene29654:CDS | 10.0% |
| !!! | TTTAAATGGATACATTTTAT+TGG | + | chr5.1:64870692-64870711 | None:intergenic | 15.0% |
| !! | AAAAAGACCAAATGATTATA+TGG | - | chr5.1:64870903-64870922 | MS.gene29654:intron | 20.0% |
| !! | CAAATATGGTAATAAGAATT+TGG | + | chr5.1:64870718-64870737 | None:intergenic | 20.0% |
| !! | TAAGAATTTGGCAATTTAAA+TGG | + | chr5.1:64870706-64870725 | None:intergenic | 20.0% |
| !! | TGAATTAATTCTTGATAAGT+TGG | - | chr5.1:64870516-64870535 | MS.gene29654:CDS | 20.0% |
| !! | TTATATATCCCTATATGAAA+TGG | + | chr5.1:64871441-64871460 | None:intergenic | 20.0% |
| !!! | AATCATTTGGTCTTTTTATA+GGG | + | chr5.1:64870900-64870919 | None:intergenic | 20.0% |
| !!! | AATTATGTCTCACATAATTT+TGG | + | chr5.1:64870343-64870362 | None:intergenic | 20.0% |
| !!! | TAATCATTTGGTCTTTTTAT+AGG | + | chr5.1:64870901-64870920 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTTTGTCTGTAA+TGG | - | chr5.1:64870031-64870050 | MS.gene29654:CDS | 20.0% |
| ! | ATAGAACATAACATCCATAA+AGG | + | chr5.1:64871025-64871044 | None:intergenic | 25.0% |
| ! | ATATGAATTTCAACAAACAG+AGG | - | chr5.1:64870374-64870393 | MS.gene29654:CDS | 25.0% |
| ! | ATCATATACAAGTTTATCTG+AGG | - | chr5.1:64870846-64870865 | MS.gene29654:intron | 25.0% |
| ! | ATTATTATTGTAGGATTGCT+AGG | - | chr5.1:64870243-64870262 | MS.gene29654:CDS | 25.0% |
| ! | TAGCATTTGTTTAAACTTTC+CGG | + | chr5.1:64871265-64871284 | None:intergenic | 25.0% |
| ! | TATCTTGTGAAATCATTAGA+GGG | - | chr5.1:64871162-64871181 | MS.gene29654:intron | 25.0% |
| ! | TATGTGAGACATAATTTGAT+GGG | - | chr5.1:64870347-64870366 | MS.gene29654:CDS | 25.0% |
| ! | TTATCTTGTGAAATCATTAG+AGG | - | chr5.1:64871161-64871180 | MS.gene29654:intron | 25.0% |
| ! | TTATGTGAGACATAATTTGA+TGG | - | chr5.1:64870346-64870365 | MS.gene29654:CDS | 25.0% |
| ! | TTCTAACCAATATAACAAGA+AGG | + | chr5.1:64870459-64870478 | None:intergenic | 25.0% |
| ! | TTTATGGATGTTATGTTCTA+TGG | - | chr5.1:64871024-64871043 | MS.gene29654:intron | 25.0% |
| !! | AAAAAAGCAATTTTCCATAG+TGG | + | chr5.1:64870068-64870087 | None:intergenic | 25.0% |
| !! | ACGTTTCGATTTTATAAAAG+CGG | - | chr5.1:64870954-64870973 | MS.gene29654:intron | 25.0% |
| !! | ATAGTTCCTTCTTGTTATAT+TGG | - | chr5.1:64870450-64870469 | MS.gene29654:CDS | 25.0% |
| !! | CAAATAGATCACATTTGTTT+TGG | - | chr5.1:64870544-64870563 | MS.gene29654:CDS | 25.0% |
| !! | GGTATAGTATCTTTTAATCT+TGG | - | chr5.1:64871078-64871097 | MS.gene29654:intron | 25.0% |
| !! | TCTGTTTGTTGAAATTCATA+TGG | + | chr5.1:64870375-64870394 | None:intergenic | 25.0% |
| !! | TCTTATTACCATATTTGTTG+TGG | - | chr5.1:64870721-64870740 | MS.gene29654:CDS | 25.0% |
| !!! | ATATCCAATTTAGAAGTGTT+AGG | + | chr5.1:64870410-64870429 | None:intergenic | 25.0% |
| AAATTTGGTAAAACCCAGAA+AGG | + | chr5.1:64871531-64871550 | None:intergenic | 30.0% | |
| AAGTTAGATTGTGTAACTTG+TGG | - | chr5.1:64871414-64871433 | MS.gene29654:intron | 30.0% | |
| ACAAACATCTTTCTGTTCTT+GGG | + | chr5.1:64870657-64870676 | None:intergenic | 30.0% | |
| ACCAAATGATTATATGGTTG+CGG | - | chr5.1:64870909-64870928 | MS.gene29654:intron | 30.0% | |
| AGAAGGATGCAATATTGTTA+TGG | + | chr5.1:64870788-64870807 | None:intergenic | 30.0% | |
| GGGATATATAATGTAAGAGA+TGG | - | chr5.1:64871450-64871469 | MS.gene29654:intron | 30.0% | |
| GGTTAGAATTGAACTAGATT+GGG | - | chr5.1:64870471-64870490 | MS.gene29654:CDS | 30.0% | |
| TACAAACATCTTTCTGTTCT+TGG | + | chr5.1:64870658-64870677 | None:intergenic | 30.0% | |
| TATGTTGCGAGTAAATATCA+CGG | - | chr5.1:64871057-64871076 | MS.gene29654:intron | 30.0% | |
| TGGTTAGAATTGAACTAGAT+TGG | - | chr5.1:64870470-64870489 | MS.gene29654:CDS | 30.0% | |
| TGTTCCTAACACTTCTAAAT+TGG | - | chr5.1:64870403-64870422 | MS.gene29654:CDS | 30.0% | |
| ! | AAGTTTTCTGTCTCAATTTG+TGG | - | chr5.1:64870172-64870191 | MS.gene29654:CDS | 30.0% |
| ! | ACAAATAGAAGAGTATGTGT+TGG | + | chr5.1:64870298-64870317 | None:intergenic | 30.0% |
| ! | CAAATAGAAGAGTATGTGTT+GGG | + | chr5.1:64870297-64870316 | None:intergenic | 30.0% |
| ! | CAGAAAACTTTTCTCTCATT+CGG | + | chr5.1:64870162-64870181 | None:intergenic | 30.0% |
| ! | CGTTTCGATTTTATAAAAGC+GGG | - | chr5.1:64870955-64870974 | MS.gene29654:intron | 30.0% |
| ! | CTTTTAATCTTGGTCATAAG+AGG | - | chr5.1:64871088-64871107 | MS.gene29654:intron | 30.0% |
| ! | TATACAAGTTTATCTGAGGT+CGG | - | chr5.1:64870850-64870869 | MS.gene29654:intron | 30.0% |
| ! | TATGTCTCACATAATTTTGG+TGG | + | chr5.1:64870340-64870359 | None:intergenic | 30.0% |
| !! | GGAGACAATGTTTTATTCTT+GGG | - | chr5.1:64871300-64871319 | MS.gene29654:intron | 30.0% |
| !! | TGGAGACAATGTTTTATTCT+TGG | - | chr5.1:64871299-64871318 | MS.gene29654:intron | 30.0% |
| !!! | TGAATCTTTTTTCAGACAAC+CGG | + | chr5.1:64871364-64871383 | None:intergenic | 30.0% |
| AACTTGTATATGATCGATCG+AGG | + | chr5.1:64870840-64870859 | None:intergenic | 35.0% | |
| ACTTGTATATGATCGATCGA+GGG | + | chr5.1:64870839-64870858 | None:intergenic | 35.0% | |
| ACTTGTGGTCCATTTCATAT+AGG | - | chr5.1:64871429-64871448 | MS.gene29654:intron | 35.0% | |
| AGCTTAACCATCAAAATCAG+CGG | - | chr5.1:64870599-64870618 | MS.gene29654:CDS | 35.0% | |
| ATAGGAGCAACATTCTTAGA+AGG | + | chr5.1:64870805-64870824 | None:intergenic | 35.0% | |
| ATGGATGTTATGTTCTATGG+AGG | - | chr5.1:64871027-64871046 | MS.gene29654:intron | 35.0% | |
| CGAATTCAAACTTGTACACT+TGG | + | chr5.1:64871233-64871252 | None:intergenic | 35.0% | |
| CTTGTGGTCCATTTCATATA+GGG | - | chr5.1:64871430-64871449 | MS.gene29654:intron | 35.0% | |
| GATAACTCCAAATCCATTTC+AGG | - | chr5.1:64871110-64871129 | MS.gene29654:intron | 35.0% | |
| GGCTAAATCCACAACAAATA+TGG | + | chr5.1:64870732-64870751 | None:intergenic | 35.0% | |
| GTGAAGATTATGATGATCAG+AGG | + | chr5.1:64871478-64871497 | None:intergenic | 35.0% | |
| TGAAAAGCTATGTCCTGAAA+TGG | + | chr5.1:64871126-64871145 | None:intergenic | 35.0% | |
| TGAACTAGATTGGGCAAATT+TGG | - | chr5.1:64870480-64870499 | MS.gene29654:CDS | 35.0% | |
| TGGATGAATAGTTTCCACTA+TGG | - | chr5.1:64870051-64870070 | MS.gene29654:CDS | 35.0% | |
| ! | ATACAAGTTTATCTGAGGTC+GGG | - | chr5.1:64870851-64870870 | MS.gene29654:intron | 35.0% |
| ! | GCTTTTCATGGAAGGTTTAA+AGG | - | chr5.1:64871138-64871157 | MS.gene29654:intron | 35.0% |
| ! | TTTCAGGACATAGCTTTTCA+TGG | - | chr5.1:64871126-64871145 | MS.gene29654:intron | 35.0% |
| !! | ATTTGTTGTGGATTTAGCCA+TGG | - | chr5.1:64870733-64870752 | MS.gene29654:intron | 35.0% |
| AACCATGCTGGACTTATGTA+TGG | - | chr5.1:64870980-64870999 | MS.gene29654:intron | 40.0% | |
| AATCATTAGAGGGAGACTTG+TGG | - | chr5.1:64871172-64871191 | MS.gene29654:intron | 40.0% | |
| AGGATTATCGCAATTGAGTG+TGG | + | chr5.1:64870124-64870143 | None:intergenic | 40.0% | |
| ATAAAGGAATGATGCCAGCT+CGG | + | chr5.1:64871009-64871028 | None:intergenic | 40.0% | |
| ATCCATACATAAGTCCAGCA+TGG | + | chr5.1:64870985-64871004 | None:intergenic | 40.0% | |
| ATGCTAAAGCTTGAGAGTCT+TGG | - | chr5.1:64871279-64871298 | MS.gene29654:intron | 40.0% | |
| GCAATTCACACTAGCATTCA+TGG | - | chr5.1:64870931-64870950 | MS.gene29654:intron | 40.0% | |
| GCCGCAACCATATAATCATT+TGG | + | chr5.1:64870913-64870932 | None:intergenic | 40.0% | |
| GTATCAGCTTCATACTTCTC+CGG | - | chr5.1:64871342-64871361 | MS.gene29654:intron | 40.0% | |
| GTTCTTGGGATCATTAGCAT+GGG | + | chr5.1:64870643-64870662 | None:intergenic | 40.0% | |
| TAATTGCCAACTCTTGCACA+CGG | + | chr5.1:64870572-64870591 | None:intergenic | 40.0% | |
| TCTCTCATTCGGATTTCAAG+AGG | + | chr5.1:64870151-64870170 | None:intergenic | 40.0% | |
| TGTTCTTGGGATCATTAGCA+TGG | + | chr5.1:64870644-64870663 | None:intergenic | 40.0% | |
| TTTGAATTCGATGCTCAGAC+CGG | - | chr5.1:64871243-64871262 | MS.gene29654:intron | 40.0% | |
| TTTGGTAAAACCCAGAAAGG+TGG | + | chr5.1:64871528-64871547 | None:intergenic | 40.0% | |
| ! | AGGACATAGCTTTTCATGGA+AGG | - | chr5.1:64871130-64871149 | MS.gene29654:intron | 40.0% |
| ! | GCTATGTCCTGAAATGGATT+TGG | + | chr5.1:64871120-64871139 | None:intergenic | 40.0% |
| !!! | TTCTGAACCGCTGATTTTGA+TGG | + | chr5.1:64870609-64870628 | None:intergenic | 40.0% |
| ATTAGAGGGAGACTTGTGGA+TGG | - | chr5.1:64871176-64871195 | MS.gene29654:intron | 45.0% | |
| CAATTGTTGCAAGCCAACCA+TGG | + | chr5.1:64870753-64870772 | None:intergenic | 45.0% | |
| GAGCTGGCATCATTCCTTTA+TGG | - | chr5.1:64871008-64871027 | MS.gene29654:intron | 45.0% | |
| GTATATGATCGATCGAGGGT+TGG | + | chr5.1:64870835-64870854 | None:intergenic | 45.0% | |
| GTTGTGGATTTAGCCATGGT+TGG | - | chr5.1:64870737-64870756 | MS.gene29654:intron | 45.0% | |
| TAAAGGAATGATGCCAGCTC+GGG | + | chr5.1:64871008-64871027 | None:intergenic | 45.0% | |
| TCGAGGGTTGGAAGACTAAT+AGG | + | chr5.1:64870823-64870842 | None:intergenic | 45.0% | |
| TTAGCAGCACAACAACAGAG+AGG | - | chr5.1:64869998-64870017 | MS.gene29654:CDS | 45.0% | |
| ! | TTTATCTGAGGTCGGGTACA+AGG | - | chr5.1:64870858-64870877 | MS.gene29654:intron | 45.0% |
| !! | TTAATATTAATTATTATTGT+AGG | - | chr5.1:64870234-64870253 | MS.gene29654:CDS | 5.0% |
| CGCACAAACGGCAGCTAATT+GGG | - | chr5.1:64869971-64869990 | MS.gene29654:CDS | 50.0% | |
| CTTATGTATGGATCCCGAGC+TGG | - | chr5.1:64870992-64871011 | MS.gene29654:intron | 50.0% | |
| GCACAAACGGCAGCTAATTG+GGG | - | chr5.1:64869972-64869991 | MS.gene29654:CDS | 50.0% | |
| GGTAAAACCCAGAAAGGTGG+TGG | + | chr5.1:64871525-64871544 | None:intergenic | 50.0% | |
| TTCGGATTTCAAGAGGCTCG+AGG | + | chr5.1:64870144-64870163 | None:intergenic | 50.0% | |
| ! | CAATTAGCTGCCGTTTGTGC+GGG | + | chr5.1:64869972-64869991 | None:intergenic | 50.0% |
| ! | CCAATTAGCTGCCGTTTGTG+CGG | + | chr5.1:64869973-64869992 | None:intergenic | 50.0% |
| CCGCACAAACGGCAGCTAAT+TGG | - | chr5.1:64869970-64869989 | MS.gene29654:CDS | 55.0% | |
| TAAAAGCGGGCGAACCATGC+TGG | - | chr5.1:64870968-64870987 | MS.gene29654:intron | 55.0% | |
| TCGTTCCCAACCCGCACAAA+CGG | - | chr5.1:64869959-64869978 | MS.gene29654:CDS | 55.0% | |
| !! | TTGGTGCCGTGTGCAAGAGT+TGG | - | chr5.1:64870563-64870582 | MS.gene29654:CDS | 55.0% |
| AGCAGCAGCCACCACCTTTC+TGG | - | chr5.1:64871514-64871533 | MS.gene29654:CDS | 60.0% | |
| GCAGCAGCCACCACCTTTCT+GGG | - | chr5.1:64871515-64871534 | MS.gene29654:CDS | 60.0% | |
| ! | AGCTGCCGTTTGTGCGGGTT+GGG | + | chr5.1:64869967-64869986 | None:intergenic | 60.0% |
| ! | TAGCTGCCGTTTGTGCGGGT+TGG | + | chr5.1:64869968-64869987 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 64869943 | 64871557 | 64869943 | ID=MS.gene29654 |
| chr5.1 | mRNA | 64869943 | 64871557 | 64869943 | ID=MS.gene29654.t1;Parent=MS.gene29654 |
| chr5.1 | exon | 64871481 | 64871557 | 64871481 | ID=MS.gene29654.t1.exon1;Parent=MS.gene29654.t1 |
| chr5.1 | CDS | 64871481 | 64871557 | 64871481 | ID=cds.MS.gene29654.t1;Parent=MS.gene29654.t1 |
| chr5.1 | exon | 64869943 | 64870750 | 64869943 | ID=MS.gene29654.t1.exon2;Parent=MS.gene29654.t1 |
| chr5.1 | CDS | 64869943 | 64870750 | 64869943 | ID=cds.MS.gene29654.t1;Parent=MS.gene29654.t1 |
| Gene Sequence |
| Protein sequence |
