Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71604.t1 | XP_013469973.1 | 98.5 | 132 | 1 | 1 | 1 | 132 | 1 | 131 | 1.70E-60 | 241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71604.t1 | I3T1P7 | 98.5 | 132 | 1 | 1 | 1 | 132 | 1 | 131 | 1.2e-60 | 241.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene71604 | 0.82025 | 7.58E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene71604 | 0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene71604 | 0.807715 | 4.41E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene71604 | 0.826594 | 2.49E-54 | -1.69E-46 |
| MS.gene049284 | MS.gene71604 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene71604 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene71604 | 0.875143 | 3.89E-68 | -1.69E-46 |
| MS.gene049351 | MS.gene71604 | 0.865044 | 7.85E-65 | -1.69E-46 |
| MS.gene049356 | MS.gene71604 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene049389 | MS.gene71604 | 0.826862 | 2.15E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene71604 | 0.85756 | 1.50E-62 | -1.69E-46 |
| MS.gene049599 | MS.gene71604 | -0.824847 | 6.47E-54 | -1.69E-46 |
| MS.gene049614 | MS.gene71604 | 0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene049661 | MS.gene71604 | 0.884961 | 1.23E-71 | -1.69E-46 |
| MS.gene049662 | MS.gene71604 | 0.884724 | 1.50E-71 | -1.69E-46 |
| MS.gene049681 | MS.gene71604 | 0.816999 | 4.14E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene71604 | 0.916291 | 2.12E-85 | -1.69E-46 |
| MS.gene049910 | MS.gene71604 | 0.858707 | 6.85E-63 | -1.69E-46 |
| MS.gene049915 | MS.gene71604 | 0.840866 | 6.72E-58 | -1.69E-46 |
| MS.gene050076 | MS.gene71604 | 0.870837 | 1.08E-66 | -1.69E-46 |
| MS.gene050099 | MS.gene71604 | 0.865665 | 5.01E-65 | -1.69E-46 |
| MS.gene050128 | MS.gene71604 | 0.867899 | 9.74E-66 | -1.69E-46 |
| MS.gene050301 | MS.gene71604 | 0.916041 | 2.87E-85 | -1.69E-46 |
| MS.gene050397 | MS.gene71604 | 0.881186 | 2.96E-70 | -1.69E-46 |
| MS.gene050404 | MS.gene71604 | 0.859357 | 4.37E-63 | -1.69E-46 |
| MS.gene050406 | MS.gene71604 | 0.868117 | 8.29E-66 | -1.69E-46 |
| MS.gene050432 | MS.gene71604 | 0.856432 | 3.23E-62 | -1.69E-46 |
| MS.gene050464 | MS.gene71604 | 0.859148 | 5.05E-63 | -1.69E-46 |
| MS.gene050529 | MS.gene71604 | 0.868663 | 5.52E-66 | -1.69E-46 |
| MS.gene05053 | MS.gene71604 | 0.831757 | 1.39E-55 | -1.69E-46 |
| MS.gene050558 | MS.gene71604 | 0.824472 | 7.93E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene71604 | 0.82176 | 3.40E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene71604 | 0.824936 | 6.16E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene71604 | 0.83844 | 2.87E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene71604 | 0.841635 | 4.22E-58 | -1.69E-46 |
| MS.gene05101 | MS.gene71604 | 0.890122 | 1.31E-73 | -1.69E-46 |
| MS.gene05105 | MS.gene71604 | 0.826715 | 2.33E-54 | -1.69E-46 |
| MS.gene05119 | MS.gene71604 | -0.819867 | 9.27E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene71604 | 0.910333 | 2.11E-82 | -1.69E-46 |
| MS.gene051582 | MS.gene71604 | 0.830561 | 2.74E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene71604 | 0.846088 | 2.71E-59 | -1.69E-46 |
| MS.gene051663 | MS.gene71604 | 0.850874 | 1.28E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene71604 | 0.852194 | 5.42E-61 | -1.69E-46 |
| MS.gene051877 | MS.gene71604 | 0.81629 | 5.97E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene71604 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene71604 | 0.832785 | 7.76E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene71604 | 0.92226 | 1.24E-88 | -1.69E-46 |
| MS.gene052178 | MS.gene71604 | 0.898066 | 7.63E-77 | -1.69E-46 |
| MS.gene052188 | MS.gene71604 | 0.890685 | 7.88E-74 | -1.69E-46 |
| MS.gene052207 | MS.gene71604 | 0.833967 | 3.93E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene71604 | 0.856704 | 2.69E-62 | -1.69E-46 |
| MS.gene052287 | MS.gene71604 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene71604 | 0.836197 | 1.08E-56 | -1.69E-46 |
| MS.gene052293 | MS.gene71604 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene71604 | 0.9019 | 1.68E-78 | -1.69E-46 |
| MS.gene052322 | MS.gene71604 | 0.818559 | 1.84E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene71604 | 0.865901 | 4.22E-65 | -1.69E-46 |
| MS.gene052340 | MS.gene71604 | 0.896659 | 2.98E-76 | -1.69E-46 |
| MS.gene052485 | MS.gene71604 | 0.835937 | 1.25E-56 | -1.69E-46 |
| MS.gene053073 | MS.gene71604 | 0.855258 | 7.12E-62 | -1.69E-46 |
| MS.gene053103 | MS.gene71604 | 0.808283 | 3.34E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene71604 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene71604 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene71604 | 0.873103 | 1.91E-67 | -1.69E-46 |
| MS.gene053322 | MS.gene71604 | 0.805562 | 1.26E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene71604 | 0.88399 | 2.81E-71 | -1.69E-46 |
| MS.gene053559 | MS.gene71604 | 0.801761 | 7.73E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene71604 | 0.914888 | 1.13E-84 | -1.69E-46 |
| MS.gene053907 | MS.gene71604 | 0.847636 | 1.02E-59 | -1.69E-46 |
| MS.gene053928 | MS.gene71604 | 0.862169 | 6.13E-64 | -1.69E-46 |
| MS.gene053971 | MS.gene71604 | 0.813763 | 2.17E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene71604 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene71604 | 0.843075 | 1.75E-58 | -1.69E-46 |
| MS.gene054012 | MS.gene71604 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene054013 | MS.gene71604 | 0.823023 | 1.73E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene71604 | 0.864305 | 1.34E-64 | -1.69E-46 |
| MS.gene054184 | MS.gene71604 | 0.822994 | 1.76E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene71604 | 0.831619 | 1.51E-55 | -1.69E-46 |
| MS.gene054214 | MS.gene71604 | 0.813254 | 2.81E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene71604 | 0.825259 | 5.17E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene71604 | 0.855492 | 6.09E-62 | -1.69E-46 |
| MS.gene054473 | MS.gene71604 | 0.852224 | 5.31E-61 | -1.69E-46 |
| MS.gene054542 | MS.gene71604 | 0.816851 | 4.47E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene71604 | 0.841703 | 4.05E-58 | -1.69E-46 |
| MS.gene054618 | MS.gene71604 | 0.817895 | 2.60E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene71604 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene71604 | 0.835493 | 1.63E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene71604 | 0.836902 | 7.13E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene71604 | 0.837255 | 5.79E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene71604 | 0.83062 | 2.65E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene71604 | 0.804967 | 1.67E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene71604 | 0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene054983 | MS.gene71604 | 0.829824 | 4.15E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene71604 | 0.876325 | 1.53E-68 | -1.69E-46 |
| MS.gene055133 | MS.gene71604 | 0.83097 | 2.18E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene71604 | 0.850408 | 1.73E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene71604 | 0.918547 | 1.36E-86 | -1.69E-46 |
| MS.gene055390 | MS.gene71604 | 0.879934 | 8.30E-70 | -1.69E-46 |
| MS.gene055397 | MS.gene71604 | 0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene71604 | 0.916634 | 1.41E-85 | -1.69E-46 |
| MS.gene055428 | MS.gene71604 | 0.910442 | 1.86E-82 | -1.69E-46 |
| MS.gene05553 | MS.gene71604 | 0.818202 | 2.22E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene71604 | 0.862137 | 6.27E-64 | -1.69E-46 |
| MS.gene055712 | MS.gene71604 | 0.858801 | 6.42E-63 | -1.69E-46 |
| MS.gene055896 | MS.gene71604 | 0.828367 | 9.35E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene71604 | -0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene71604 | 0.872711 | 2.58E-67 | -1.69E-46 |
| MS.gene056314 | MS.gene71604 | 0.844582 | 6.91E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene71604 | 0.858607 | 7.34E-63 | -1.69E-46 |
| MS.gene056410 | MS.gene71604 | 0.839895 | 1.20E-57 | -1.69E-46 |
| MS.gene056451 | MS.gene71604 | 0.817083 | 3.96E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene71604 | 0.864336 | 1.31E-64 | -1.69E-46 |
| MS.gene056612 | MS.gene71604 | 0.901732 | 1.99E-78 | -1.69E-46 |
| MS.gene056659 | MS.gene71604 | 0.848097 | 7.62E-60 | -1.69E-46 |
| MS.gene056719 | MS.gene71604 | 0.815293 | 9.96E-52 | -1.69E-46 |
| MS.gene056772 | MS.gene71604 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene71604 | -0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene71604 | 0.817776 | 2.77E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene71604 | 0.906338 | 1.65E-80 | -1.69E-46 |
| MS.gene057121 | MS.gene71604 | 0.869294 | 3.45E-66 | -1.69E-46 |
| MS.gene057123 | MS.gene71604 | 0.832086 | 1.16E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene71604 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene71604 | 0.859809 | 3.20E-63 | -1.69E-46 |
| MS.gene057260 | MS.gene71604 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene71604 | 0.836098 | 1.14E-56 | -1.69E-46 |
| MS.gene05733 | MS.gene71604 | 0.863163 | 3.03E-64 | -1.69E-46 |
| MS.gene057396 | MS.gene71604 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene71604 | 0.871219 | 8.07E-67 | -1.69E-46 |
| MS.gene057448 | MS.gene71604 | 0.856879 | 2.39E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene71604 | 0.847483 | 1.12E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene71604 | 0.871943 | 4.65E-67 | -1.69E-46 |
| MS.gene057469 | MS.gene71604 | 0.806364 | 8.53E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene71604 | 0.821372 | 4.18E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene71604 | 0.849178 | 3.82E-60 | -1.69E-46 |
| MS.gene057779 | MS.gene71604 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene057782 | MS.gene71604 | 0.816209 | 6.22E-52 | -1.69E-46 |
| MS.gene057794 | MS.gene71604 | 0.841288 | 5.20E-58 | -1.69E-46 |
| MS.gene057796 | MS.gene71604 | 0.851981 | 6.23E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene71604 | 0.81591 | 7.26E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene71604 | 0.9025 | 9.10E-79 | -1.69E-46 |
| MS.gene058082 | MS.gene71604 | 0.844393 | 7.78E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene71604 | 0.899149 | 2.64E-77 | -1.69E-46 |
| MS.gene058142 | MS.gene71604 | 0.863193 | 2.96E-64 | -1.69E-46 |
| MS.gene058233 | MS.gene71604 | 0.860781 | 1.63E-63 | -1.69E-46 |
| MS.gene058236 | MS.gene71604 | 0.806757 | 7.05E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene71604 | 0.835086 | 2.06E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene71604 | 0.867701 | 1.13E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene71604 | 0.84856 | 5.67E-60 | -1.69E-46 |
| MS.gene05842 | MS.gene71604 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene71604 | 0.898556 | 4.72E-77 | -1.69E-46 |
| MS.gene058710 | MS.gene71604 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene71604 | 0.845221 | 4.65E-59 | -1.69E-46 |
| MS.gene058787 | MS.gene71604 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene058845 | MS.gene71604 | 0.854307 | 1.34E-61 | -1.69E-46 |
| MS.gene05886 | MS.gene71604 | 0.846824 | 1.70E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene71604 | 0.855097 | 7.93E-62 | -1.69E-46 |
| MS.gene058993 | MS.gene71604 | 0.813114 | 3.01E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene71604 | 0.893291 | 7.21E-75 | -1.69E-46 |
| MS.gene059228 | MS.gene71604 | 0.871954 | 4.61E-67 | -1.69E-46 |
| MS.gene059285 | MS.gene71604 | 0.852815 | 3.60E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene71604 | 0.854197 | 1.44E-61 | -1.69E-46 |
| MS.gene059326 | MS.gene71604 | 0.852239 | 5.26E-61 | -1.69E-46 |
| MS.gene059342 | MS.gene71604 | 0.821659 | 3.59E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene71604 | 0.801208 | 1.00E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene71604 | 0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene059421 | MS.gene71604 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene71604 | 0.893573 | 5.54E-75 | -1.69E-46 |
| MS.gene059597 | MS.gene71604 | 0.888486 | 5.66E-73 | -1.69E-46 |
| MS.gene05959 | MS.gene71604 | 0.830731 | 2.49E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene71604 | 0.868049 | 8.72E-66 | -1.69E-46 |
| MS.gene059688 | MS.gene71604 | 0.885001 | 1.18E-71 | -1.69E-46 |
| MS.gene059692 | MS.gene71604 | 0.903981 | 1.98E-79 | -1.69E-46 |
| MS.gene059695 | MS.gene71604 | 0.895574 | 8.42E-76 | -1.69E-46 |
| MS.gene059708 | MS.gene71604 | 0.849763 | 2.62E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene71604 | 0.890804 | 7.08E-74 | -1.69E-46 |
| MS.gene059894 | MS.gene71604 | 0.927051 | 2.01E-91 | -1.69E-46 |
| MS.gene059899 | MS.gene71604 | 0.820453 | 6.81E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene71604 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene71604 | 0.863851 | 1.85E-64 | -1.69E-46 |
| MS.gene060005 | MS.gene71604 | 0.85141 | 9.04E-61 | -1.69E-46 |
| MS.gene06037 | MS.gene71604 | 0.914489 | 1.81E-84 | -1.69E-46 |
| MS.gene060403 | MS.gene71604 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene71604 | 0.851612 | 7.92E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene71604 | 0.865761 | 4.67E-65 | -1.69E-46 |
| MS.gene060495 | MS.gene71604 | 0.827758 | 1.31E-54 | -1.69E-46 |
| MS.gene060496 | MS.gene71604 | 0.808421 | 3.12E-50 | -1.69E-46 |
| MS.gene060559 | MS.gene71604 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene71604 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene71604 | 0.800694 | 1.28E-48 | -1.69E-46 |
| MS.gene060986 | MS.gene71604 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene71604 | 0.938343 | 7.87E-99 | -1.69E-46 |
| MS.gene061051 | MS.gene71604 | -0.868675 | 5.47E-66 | -1.69E-46 |
| MS.gene061112 | MS.gene71604 | 0.861584 | 9.26E-64 | -1.69E-46 |
| MS.gene061113 | MS.gene71604 | 0.819242 | 1.29E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene71604 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene71604 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene061265 | MS.gene71604 | 0.861067 | 1.33E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71604.t1 | MTR_1g106075 | 98.485 | 132 | 1 | 1 | 1 | 132 | 1 | 131 | 1.41e-92 | 263 |
| MS.gene71604.t1 | MTR_3g008630 | 93.939 | 132 | 7 | 1 | 1 | 132 | 1 | 131 | 1.06e-87 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71604.t1 | AT1G49975 | 62.687 | 134 | 43 | 3 | 1 | 132 | 1 | 129 | 5.90e-51 | 158 |
Find 35 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACCACCAACATGGAATT+TGG | 0.289275 | 1.4:+82080677 | MS.gene71604:CDS |
| GAAGAGGCGATGAGTTCTAT+AGG | 0.348824 | 1.4:+82080554 | None:intergenic |
| GATTACTTTGAGTTCGTAGA+AGG | 0.353863 | 1.4:+82081176 | MS.gene71604:CDS |
| TATAGGGCAAACCATGTTAA+TGG | 0.362210 | 1.4:+82080571 | MS.gene71604:CDS |
| CAGAAAAGGGTATCCTTGAT+TGG | 0.408398 | 1.4:+82081237 | MS.gene71604:CDS |
| GTTTGCAAGGAAAGGAGGAG+GGG | 0.424219 | 1.4:+82081201 | MS.gene71604:CDS |
| GAAGCTTTCAGAAGCAGAAA+AGG | 0.433331 | 1.4:+82081223 | MS.gene71604:CDS |
| GGGTTTGCAAGGAAAGGAGG+AGG | 0.434142 | 1.4:+82081199 | MS.gene71604:CDS |
| CCTTCCAAATTCCATGTTGG+TGG | 0.438290 | 1.4:-82080681 | None:intergenic |
| TTGGTGGTGCTTCTCAAAGT+TGG | 0.441638 | 1.4:-82080665 | None:intergenic |
| TGGTGGTGCTTCTCAAAGTT+GGG | 0.449042 | 1.4:-82080664 | None:intergenic |
| AGGGTCTTGCGTTGCGGTTG+CGG | 0.451542 | 1.4:-82080732 | None:intergenic |
| TGTTAGCTTTAAGCCAATCA+AGG | 0.469309 | 1.4:-82081250 | None:intergenic |
| AAGAGGCGATGAGTTCTATA+GGG | 0.479187 | 1.4:+82080555 | None:intergenic |
| AGAAGCAATGTCCTTGACTC+AGG | 0.482163 | 1.4:-82080752 | None:intergenic |
| GGTTTGCAAGGAAAGGAGGA+GGG | 0.503240 | 1.4:+82081200 | MS.gene71604:CDS |
| TTATTACAAGCGTAATTACA+AGG | 0.507139 | 1.4:+82081154 | MS.gene71604:CDS |
| TCTCCTTCCAAATTCCATGT+TGG | 0.526459 | 1.4:-82080684 | None:intergenic |
| GTTAATGGCACTAACAGTTA+CGG | 0.549686 | 1.4:+82080586 | MS.gene71604:CDS |
| AACTGTTAGTGCCATTAACA+TGG | 0.549756 | 1.4:-82080582 | None:intergenic |
| GTATGCATCATCCAATGTGC+AGG | 0.549946 | 1.4:+82080616 | MS.gene71604:CDS |
| TGACTCAGGGTCTTGCGTTG+CGG | 0.557938 | 1.4:-82080738 | None:intergenic |
| TACTTTGAGTTCGTAGAAGG+GGG | 0.574786 | 1.4:+82081179 | MS.gene71604:CDS |
| AACATGGAATTTGGAAGGAG+AGG | 0.586422 | 1.4:+82080686 | MS.gene71604:CDS |
| ATTATGAACTGCCTGCACAT+TGG | 0.588435 | 1.4:-82080627 | None:intergenic |
| ATTACTTTGAGTTCGTAGAA+GGG | 0.593520 | 1.4:+82081177 | MS.gene71604:CDS |
| AAGCTTTCAGAAGCAGAAAA+GGG | 0.600223 | 1.4:+82081224 | MS.gene71604:CDS |
| GAAGAAAACAGAGGAAAACA+AGG | 0.601206 | 1.4:+82081024 | MS.gene71604:CDS |
| TTACTTTGAGTTCGTAGAAG+GGG | 0.603502 | 1.4:+82081178 | MS.gene71604:CDS |
| GAAGCAATGTCCTTGACTCA+GGG | 0.617035 | 1.4:-82080751 | None:intergenic |
| CCACCAACATGGAATTTGGA+AGG | 0.619705 | 1.4:+82080681 | MS.gene71604:CDS |
| TGCGGTTGCGGCGATAACAG+TGG | 0.623047 | 1.4:-82080720 | None:intergenic |
| CAACGCAAGACCCTGAGTCA+AGG | 0.623179 | 1.4:+82080741 | MS.gene71604:CDS |
| TTTGAGAAGCACCACCAACA+TGG | 0.627251 | 1.4:+82080670 | MS.gene71604:CDS |
| AGAATATTTGAAGAAAACAG+AGG | 0.670181 | 1.4:+82081015 | MS.gene71604:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAATATTTGAAGAAAACAG+AGG | + | chr1.4:82081015-82081034 | MS.gene71604:intron | 25.0% |
| ! | TTATTACAAGCGTAATTACA+AGG | + | chr1.4:82081154-82081173 | MS.gene71604:CDS | 25.0% |
| AAAATGACAAAGAGGTAAGT+AGG | + | chr1.4:82081050-82081069 | MS.gene71604:intron | 30.0% | |
| AAATGACAAAGAGGTAAGTA+GGG | + | chr1.4:82081051-82081070 | MS.gene71604:intron | 30.0% | |
| ! | ATTACTTTGAGTTCGTAGAA+GGG | + | chr1.4:82081177-82081196 | MS.gene71604:CDS | 30.0% |
| ! | TTAATCACAGTTTTTGTGTG+TGG | + | chr1.4:82081117-82081136 | MS.gene71604:intron | 30.0% |
| AAGCTTTCAGAAGCAGAAAA+GGG | + | chr1.4:82081224-82081243 | MS.gene71604:CDS | 35.0% | |
| AATGACAAAGAGGTAAGTAG+GGG | + | chr1.4:82081052-82081071 | MS.gene71604:intron | 35.0% | |
| CAAGGAGAAAAATGACAAAG+AGG | + | chr1.4:82081042-82081061 | MS.gene71604:CDS | 35.0% | |
| GAAGAAAACAGAGGAAAACA+AGG | + | chr1.4:82081024-82081043 | MS.gene71604:CDS | 35.0% | |
| GTTAATGGCACTAACAGTTA+CGG | + | chr1.4:82080586-82080605 | MS.gene71604:CDS | 35.0% | |
| TAATCAAATGTGACTGTGTC+AGG | - | chr1.4:82080877-82080896 | None:intergenic | 35.0% | |
| TATAGGGCAAACCATGTTAA+TGG | + | chr1.4:82080571-82080590 | MS.gene71604:CDS | 35.0% | |
| ! | AACTGTTAGTGCCATTAACA+TGG | - | chr1.4:82080585-82080604 | None:intergenic | 35.0% |
| ! | GATTACTTTGAGTTCGTAGA+AGG | + | chr1.4:82081176-82081195 | MS.gene71604:CDS | 35.0% |
| ! | TTACTTTGAGTTCGTAGAAG+GGG | + | chr1.4:82081178-82081197 | MS.gene71604:CDS | 35.0% |
| !! | TGTTAGCTTTAAGCCAATCA+AGG | - | chr1.4:82081253-82081272 | None:intergenic | 35.0% |
| !!! | CGACATGAACATGTTTTTAG+TGG | + | chr1.4:82080950-82080969 | MS.gene71604:intron | 35.0% |
| AACATGGAATTTGGAAGGAG+AGG | + | chr1.4:82080686-82080705 | MS.gene71604:CDS | 40.0% | |
| ATTATGAACTGCCTGCACAT+TGG | - | chr1.4:82080630-82080649 | None:intergenic | 40.0% | |
| GAAGCTTTCAGAAGCAGAAA+AGG | + | chr1.4:82081223-82081242 | MS.gene71604:CDS | 40.0% | |
| TCTCCTTCCAAATTCCATGT+TGG | - | chr1.4:82080687-82080706 | None:intergenic | 40.0% | |
| ! | AGAAGTGATGACGCTACATA+GGG | - | chr1.4:82080823-82080842 | None:intergenic | 40.0% |
| ! | TACTTTGAGTTCGTAGAAGG+GGG | + | chr1.4:82081179-82081198 | MS.gene71604:CDS | 40.0% |
| !! | CAGAAAAGGGTATCCTTGAT+TGG | + | chr1.4:82081237-82081256 | MS.gene71604:CDS | 40.0% |
| AGAAGCAATGTCCTTGACTC+AGG | - | chr1.4:82080755-82080774 | None:intergenic | 45.0% | |
| AGCACCACCAACATGGAATT+TGG | + | chr1.4:82080677-82080696 | MS.gene71604:CDS | 45.0% | |
| CCACCAACATGGAATTTGGA+AGG | + | chr1.4:82080681-82080700 | MS.gene71604:CDS | 45.0% | |
| CCTTCCAAATTCCATGTTGG+TGG | - | chr1.4:82080684-82080703 | None:intergenic | 45.0% | |
| GAAGCAATGTCCTTGACTCA+GGG | - | chr1.4:82080754-82080773 | None:intergenic | 45.0% | |
| GTATGCATCATCCAATGTGC+AGG | + | chr1.4:82080616-82080635 | MS.gene71604:CDS | 45.0% | |
| TGACTGTGTCAGGTCAATGT+CGG | - | chr1.4:82080867-82080886 | None:intergenic | 45.0% | |
| ! | ACAGTTTTTGTGTGTGGCAG+AGG | + | chr1.4:82081123-82081142 | MS.gene71604:intron | 45.0% |
| ! | CAGAAGTGATGACGCTACAT+AGG | - | chr1.4:82080824-82080843 | None:intergenic | 45.0% |
| ! | CAGTTTTTGTGTGTGGCAGA+GGG | + | chr1.4:82081124-82081143 | MS.gene71604:intron | 45.0% |
| ! | TGGTGGTGCTTCTCAAAGTT+GGG | - | chr1.4:82080667-82080686 | None:intergenic | 45.0% |
| !! | TTGGTGGTGCTTCTCAAAGT+TGG | - | chr1.4:82080668-82080687 | None:intergenic | 45.0% |
| !! | TTTGAGAAGCACCACCAACA+TGG | + | chr1.4:82080670-82080689 | MS.gene71604:CDS | 45.0% |
| AGAAGGGGGTTTGCAAGGAA+AGG | + | chr1.4:82081193-82081212 | MS.gene71604:CDS | 50.0% | |
| GGTTTGCAAGGAAAGGAGGA+GGG | + | chr1.4:82081200-82081219 | MS.gene71604:CDS | 50.0% | |
| GTTTGCAAGGAAAGGAGGAG+GGG | + | chr1.4:82081201-82081220 | MS.gene71604:CDS | 50.0% | |
| TCAGCGTCGTGTTCTCTCAT+AGG | + | chr1.4:82080922-82080941 | MS.gene71604:intron | 50.0% | |
| TTCGTAGAAGGGGGTTTGCA+AGG | + | chr1.4:82081188-82081207 | MS.gene71604:CDS | 50.0% | |
| AGGGGGTTTGCAAGGAAAGG+AGG | + | chr1.4:82081196-82081215 | MS.gene71604:CDS | 55.0% | |
| CAACGCAAGACCCTGAGTCA+AGG | + | chr1.4:82080741-82080760 | MS.gene71604:CDS | 55.0% | |
| GGGTTTGCAAGGAAAGGAGG+AGG | + | chr1.4:82081199-82081218 | MS.gene71604:CDS | 55.0% | |
| TGACTCAGGGTCTTGCGTTG+CGG | - | chr1.4:82080741-82080760 | None:intergenic | 55.0% | |
| AGGGTCTTGCGTTGCGGTTG+CGG | - | chr1.4:82080735-82080754 | None:intergenic | 60.0% | |
| TGCGGTTGCGGCGATAACAG+TGG | - | chr1.4:82080723-82080742 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82080563 | 82081277 | 82080563 | ID=MS.gene71604 |
| chr1.4 | mRNA | 82080563 | 82081277 | 82080563 | ID=MS.gene71604.t1;Parent=MS.gene71604 |
| chr1.4 | exon | 82080563 | 82080779 | 82080563 | ID=MS.gene71604.t1.exon1;Parent=MS.gene71604.t1 |
| chr1.4 | CDS | 82080563 | 82080779 | 82080563 | ID=cds.MS.gene71604.t1;Parent=MS.gene71604.t1 |
| chr1.4 | exon | 82081017 | 82081063 | 82081017 | ID=MS.gene71604.t1.exon2;Parent=MS.gene71604.t1 |
| chr1.4 | CDS | 82081017 | 82081063 | 82081017 | ID=cds.MS.gene71604.t1;Parent=MS.gene71604.t1 |
| chr1.4 | exon | 82081143 | 82081277 | 82081143 | ID=MS.gene71604.t1.exon3;Parent=MS.gene71604.t1 |
| chr1.4 | CDS | 82081143 | 82081277 | 82081143 | ID=cds.MS.gene71604.t1;Parent=MS.gene71604.t1 |
| Gene Sequence |
| Protein sequence |
