Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85579.t1 | XP_013468748.1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 7.80E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85579.t1 | O65686 | 65.9 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 1.9e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85579.t1 | B3IWG1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 5.6e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene85579 | 0.827156 | 1.83E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene85579 | 0.816908 | 4.34E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene85579 | 0.814744 | 1.32E-51 | -1.69E-46 |
| MS.gene049389 | MS.gene85579 | 0.844453 | 7.49E-59 | -1.69E-46 |
| MS.gene049427 | MS.gene85579 | 0.828048 | 1.12E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene85579 | 0.872386 | 3.31E-67 | -1.69E-46 |
| MS.gene049599 | MS.gene85579 | -0.815594 | 8.53E-52 | -1.69E-46 |
| MS.gene049614 | MS.gene85579 | 0.80547 | 1.31E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene85579 | 0.848949 | 4.42E-60 | -1.69E-46 |
| MS.gene049662 | MS.gene85579 | 0.851084 | 1.12E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene85579 | 0.902214 | 1.22E-78 | -1.69E-46 |
| MS.gene049760 | MS.gene85579 | 0.835038 | 2.12E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene85579 | 0.822745 | 2.01E-53 | -1.69E-46 |
| MS.gene049915 | MS.gene85579 | 0.807504 | 4.89E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene85579 | 0.862023 | 6.80E-64 | -1.69E-46 |
| MS.gene050099 | MS.gene85579 | 0.841728 | 3.99E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene85579 | 0.853676 | 2.04E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene85579 | 0.908893 | 1.04E-81 | -1.69E-46 |
| MS.gene050397 | MS.gene85579 | 0.853965 | 1.69E-61 | -1.69E-46 |
| MS.gene050404 | MS.gene85579 | 0.846567 | 2.00E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene85579 | 0.843633 | 1.24E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene85579 | 0.860687 | 1.74E-63 | -1.69E-46 |
| MS.gene050464 | MS.gene85579 | 0.854199 | 1.44E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene85579 | 0.872796 | 2.41E-67 | -1.69E-46 |
| MS.gene050558 | MS.gene85579 | 0.815964 | 7.06E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene85579 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene85579 | 0.838641 | 2.55E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene85579 | 0.840602 | 7.88E-58 | -1.69E-46 |
| MS.gene05101 | MS.gene85579 | 0.903347 | 3.81E-79 | -1.69E-46 |
| MS.gene05119 | MS.gene85579 | -0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene85579 | 0.899904 | 1.25E-77 | -1.69E-46 |
| MS.gene051582 | MS.gene85579 | 0.822713 | 2.04E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene85579 | 0.836373 | 9.72E-57 | -1.69E-46 |
| MS.gene051663 | MS.gene85579 | 0.846033 | 2.80E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene85579 | 0.818499 | 1.90E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene85579 | 0.891574 | 3.51E-74 | -1.69E-46 |
| MS.gene052178 | MS.gene85579 | 0.876673 | 1.16E-68 | -1.69E-46 |
| MS.gene052188 | MS.gene85579 | 0.851447 | 8.82E-61 | -1.69E-46 |
| MS.gene052207 | MS.gene85579 | 0.80088 | 1.17E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene85579 | 0.822477 | 2.32E-53 | -1.69E-46 |
| MS.gene052287 | MS.gene85579 | 0.813535 | 2.44E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene85579 | 0.827517 | 1.50E-54 | -1.69E-46 |
| MS.gene052293 | MS.gene85579 | 0.802844 | 4.63E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene85579 | 0.885062 | 1.12E-71 | -1.69E-46 |
| MS.gene052322 | MS.gene85579 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene85579 | 0.867991 | 9.09E-66 | -1.69E-46 |
| MS.gene052340 | MS.gene85579 | 0.870181 | 1.77E-66 | -1.69E-46 |
| MS.gene052344 | MS.gene85579 | -0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene85579 | 0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene85579 | 0.821162 | 4.67E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene85579 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene85579 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene85579 | 0.853437 | 2.39E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene85579 | 0.820946 | 5.24E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene85579 | 0.864471 | 1.19E-64 | -1.69E-46 |
| MS.gene053559 | MS.gene85579 | 0.817316 | 3.51E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene85579 | 0.895341 | 1.05E-75 | -1.69E-46 |
| MS.gene053907 | MS.gene85579 | 0.821256 | 4.45E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene85579 | 0.845607 | 3.65E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene85579 | 0.8591 | 5.23E-63 | -1.69E-46 |
| MS.gene054473 | MS.gene85579 | 0.819135 | 1.36E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene85579 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene85579 | 0.844728 | 6.32E-59 | -1.69E-46 |
| MS.gene054802 | MS.gene85579 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene054803 | MS.gene85579 | 0.821974 | 3.03E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene85579 | 0.824136 | 9.51E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene85579 | 0.817422 | 3.33E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene85579 | 0.803442 | 3.48E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene85579 | 0.865661 | 5.02E-65 | -1.69E-46 |
| MS.gene055254 | MS.gene85579 | 0.828073 | 1.10E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene85579 | 0.885102 | 1.09E-71 | -1.69E-46 |
| MS.gene055390 | MS.gene85579 | 0.852112 | 5.72E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene85579 | 0.819885 | 9.18E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene85579 | 0.911315 | 6.99E-83 | -1.69E-46 |
| MS.gene055428 | MS.gene85579 | 0.882605 | 9.05E-71 | -1.69E-46 |
| MS.gene055499 | MS.gene85579 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene85579 | 0.850224 | 1.95E-60 | -1.69E-46 |
| MS.gene055896 | MS.gene85579 | 0.843782 | 1.13E-58 | -1.69E-46 |
| MS.gene056191 | MS.gene85579 | 0.838728 | 2.42E-57 | -1.69E-46 |
| MS.gene056314 | MS.gene85579 | 0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene85579 | 0.827291 | 1.70E-54 | -1.69E-46 |
| MS.gene056410 | MS.gene85579 | 0.806254 | 8.99E-50 | -1.69E-46 |
| MS.gene056451 | MS.gene85579 | 0.811985 | 5.32E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene85579 | 0.850072 | 2.15E-60 | -1.69E-46 |
| MS.gene056612 | MS.gene85579 | 0.881574 | 2.14E-70 | -1.69E-46 |
| MS.gene057011 | MS.gene85579 | 0.807851 | 4.13E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene85579 | 0.868749 | 5.18E-66 | -1.69E-46 |
| MS.gene057121 | MS.gene85579 | 0.84252 | 2.46E-58 | -1.69E-46 |
| MS.gene057123 | MS.gene85579 | 0.837138 | 6.20E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene85579 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene85579 | 0.833397 | 5.46E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene85579 | 0.845002 | 5.33E-59 | -1.69E-46 |
| MS.gene05733 | MS.gene85579 | 0.848993 | 4.30E-60 | -1.69E-46 |
| MS.gene057439 | MS.gene85579 | 0.852906 | 3.40E-61 | -1.69E-46 |
| MS.gene057448 | MS.gene85579 | 0.843729 | 1.17E-58 | -1.69E-46 |
| MS.gene057449 | MS.gene85579 | 0.841319 | 5.11E-58 | -1.69E-46 |
| MS.gene057450 | MS.gene85579 | 0.853044 | 3.10E-61 | -1.69E-46 |
| MS.gene057794 | MS.gene85579 | 0.800216 | 1.60E-48 | -1.69E-46 |
| MS.gene057796 | MS.gene85579 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene85579 | 0.880639 | 4.65E-70 | -1.69E-46 |
| MS.gene058082 | MS.gene85579 | 0.839423 | 1.60E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene85579 | 0.865378 | 6.17E-65 | -1.69E-46 |
| MS.gene058142 | MS.gene85579 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene85579 | 0.836803 | 7.56E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene85579 | 0.823658 | 1.23E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene85579 | 0.866751 | 2.27E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene85579 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene85579 | 0.894002 | 3.71E-75 | -1.69E-46 |
| MS.gene058787 | MS.gene85579 | 0.811945 | 5.43E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene85579 | 0.88387 | 3.11E-71 | -1.69E-46 |
| MS.gene058928 | MS.gene85579 | 0.817107 | 3.91E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene85579 | 0.866833 | 2.14E-65 | -1.69E-46 |
| MS.gene059228 | MS.gene85579 | 0.820308 | 7.35E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene85579 | 0.80671 | 7.21E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene85579 | 0.880616 | 4.74E-70 | -1.69E-46 |
| MS.gene059342 | MS.gene85579 | 0.824777 | 6.72E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene85579 | 0.875283 | 3.48E-68 | -1.69E-46 |
| MS.gene059536 | MS.gene85579 | 0.828902 | 6.94E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene85579 | 0.893818 | 4.41E-75 | -1.69E-46 |
| MS.gene05959 | MS.gene85579 | 0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene85579 | 0.859696 | 3.46E-63 | -1.69E-46 |
| MS.gene059688 | MS.gene85579 | 0.881661 | 1.99E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene85579 | 0.895236 | 1.16E-75 | -1.69E-46 |
| MS.gene059695 | MS.gene85579 | 0.894138 | 3.27E-75 | -1.69E-46 |
| MS.gene059708 | MS.gene85579 | 0.831718 | 1.42E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene85579 | 0.868671 | 5.49E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene85579 | 0.906381 | 1.58E-80 | -1.69E-46 |
| MS.gene059899 | MS.gene85579 | 0.840718 | 7.35E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene85579 | 0.831871 | 1.31E-55 | -1.69E-46 |
| MS.gene060005 | MS.gene85579 | 0.817574 | 3.07E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene85579 | 0.870526 | 1.37E-66 | -1.69E-46 |
| MS.gene060407 | MS.gene85579 | 0.816191 | 6.28E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene85579 | 0.834309 | 3.23E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene85579 | 0.807871 | 4.09E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene85579 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene85579 | 0.897979 | 8.31E-77 | -1.69E-46 |
| MS.gene061051 | MS.gene85579 | -0.867574 | 1.24E-65 | -1.69E-46 |
| MS.gene061112 | MS.gene85579 | 0.839244 | 1.78E-57 | -1.69E-46 |
| MS.gene061200 | MS.gene85579 | 0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene85579 | 0.837244 | 5.83E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85579.t1 | MTR_1g076310 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 1.06e-79 | 230 |
| MS.gene85579.t1 | MTR_2g039750 | 59.048 | 105 | 36 | 1 | 1 | 98 | 1 | 105 | 2.36e-39 | 128 |
| MS.gene85579.t1 | MTR_5g014070 | 58.095 | 105 | 37 | 1 | 1 | 98 | 1 | 105 | 3.80e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85579.t1 | AT4G34620 | 65.854 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 4.62e-38 | 124 |
| MS.gene85579.t1 | AT5G56940 | 53.846 | 104 | 41 | 1 | 1 | 97 | 1 | 104 | 5.68e-38 | 125 |
Find 23 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAACAACCCGATAAAA+TGG | 0.179817 | 1.3:+54828537 | None:intergenic |
| TGGATGGCTGCTCTTCGTTC+GGG | 0.277399 | 1.3:+54826329 | None:intergenic |
| TTGGATGGCTGCTCTTCGTT+CGG | 0.292007 | 1.3:+54826328 | None:intergenic |
| ACCATCAACTTCTTTGTCAT+TGG | 0.341893 | 1.3:+54826309 | None:intergenic |
| GGTTACTACAATCCTATTGC+AGG | 0.364917 | 1.3:-54828471 | MS.gene85579:intron |
| TCTTCGTTCGGGGTATCAAC+AGG | 0.369294 | 1.3:+54826340 | None:intergenic |
| ATTGATATTCAACCTGCAAT+AGG | 0.373630 | 1.3:+54828459 | None:intergenic |
| GGCAAGAACATTGAAGTTGT+TGG | 0.440064 | 1.3:-54828492 | MS.gene85579:CDS |
| TCCAATGACAAAGAAGTTGA+TGG | 0.440759 | 1.3:-54826310 | MS.gene85579:CDS |
| TTTAGGTATTGGCTTTCTGT+TGG | 0.451329 | 1.3:-54826448 | MS.gene85579:intron |
| AAACGGAAAGGTGGACTGTC+TGG | 0.470726 | 1.3:-54826370 | MS.gene85579:CDS |
| TCAACTTCTTTGTCATTGGA+TGG | 0.482393 | 1.3:+54826313 | None:intergenic |
| AGGCAGGTTTACAAATGAAA+CGG | 0.502953 | 1.3:-54826387 | MS.gene85579:CDS |
| AGTATTCGATTAGCGAGACT+TGG | 0.516156 | 1.3:-54828573 | MS.gene85579:CDS |
| TTACAACAACCCGATAAAAT+GGG | 0.516278 | 1.3:+54828538 | None:intergenic |
| AGACTCTCCACAGGTTCTGA+AGG | 0.549004 | 1.3:+54826418 | None:intergenic |
| GATAGCAAATGTGCAAGAGA+TGG | 0.580660 | 1.3:-54828513 | MS.gene85579:CDS |
| TGCTCAACCTTCAGAACCTG+TGG | 0.580737 | 1.3:-54826425 | MS.gene85579:CDS |
| TTGAATAAAAGACTCTCCAC+AGG | 0.595461 | 1.3:+54826409 | None:intergenic |
| GGATGGCTGCTCTTCGTTCG+GGG | 0.597237 | 1.3:+54826330 | None:intergenic |
| CTTCGTTCGGGGTATCAACA+GGG | 0.597733 | 1.3:+54826341 | None:intergenic |
| TTACAAATGAAACGGAAAGG+TGG | 0.647965 | 1.3:-54826379 | MS.gene85579:CDS |
| GGTTTACAAATGAAACGGAA+AGG | 0.664042 | 1.3:-54826382 | MS.gene85579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTAAAAAAAATTAAA+TGG | + | chr1.3:54827235-54827254 | None:intergenic | 0.0% |
| !!! | TTTAATTTTTTTTAAAATTA+CGG | - | chr1.3:54827235-54827254 | MS.gene85579:intron | 0.0% |
| !! | AAAATTTCAGAAAATTATTA+TGG | + | chr1.3:54827142-54827161 | None:intergenic | 10.0% |
| !! | TTTATTGATATTGAATATAT+AGG | - | chr1.3:54826811-54826830 | MS.gene85579:intron | 10.0% |
| !!! | TATATGCAATATTTTATTTT+TGG | + | chr1.3:54826981-54827000 | None:intergenic | 10.0% |
| !! | AAAGTAAATCAAGTTAAAAA+AGG | + | chr1.3:54828236-54828255 | None:intergenic | 15.0% |
| !!! | AAAGAATTTTTCTTTCATTT+GGG | - | chr1.3:54826544-54826563 | MS.gene85579:intron | 15.0% |
| !! | AATCAAGTTAAAAAAGGATT+AGG | + | chr1.3:54828230-54828249 | None:intergenic | 20.0% |
| !! | ATGATTTACAATTACATACA+TGG | - | chr1.3:54827269-54827288 | MS.gene85579:intron | 20.0% |
| !! | CAAATGAAAGAAAAATTCTT+TGG | + | chr1.3:54826545-54826564 | None:intergenic | 20.0% |
| !! | TATGAATATTGCATATAGAA+GGG | - | chr1.3:54826949-54826968 | MS.gene85579:intron | 20.0% |
| !! | TGTTTATAAATGATAAAACC+AGG | + | chr1.3:54828037-54828056 | None:intergenic | 20.0% |
| !! | TTATGAATATTGCATATAGA+AGG | - | chr1.3:54826948-54826967 | MS.gene85579:intron | 20.0% |
| !!! | AAGAATTTTTCTTTCATTTG+GGG | - | chr1.3:54826545-54826564 | MS.gene85579:intron | 20.0% |
| !!! | AGTTATTTGTACACAATTTT+GGG | - | chr1.3:54828341-54828360 | MS.gene85579:intron | 20.0% |
| !!! | CAAAGAATTTTTCTTTCATT+TGG | - | chr1.3:54826543-54826562 | MS.gene85579:intron | 20.0% |
| !!! | CATTTTTAATCCTTTTACTA+TGG | + | chr1.3:54828117-54828136 | None:intergenic | 20.0% |
| !!! | GGTTTTATCATTTATAAACA+CGG | - | chr1.3:54828037-54828056 | MS.gene85579:intron | 20.0% |
| !!! | GTTCAAATAACATTACTTTT+CGG | - | chr1.3:54826745-54826764 | MS.gene85579:intron | 20.0% |
| !!! | TAGTTATTTGTACACAATTT+TGG | - | chr1.3:54828340-54828359 | MS.gene85579:intron | 20.0% |
| !!! | TTAAAGCACAAAATTGTTTT+GGG | - | chr1.3:54826591-54826610 | MS.gene85579:CDS | 20.0% |
| ! | AACACATAGAATTACAGATA+AGG | + | chr1.3:54826441-54826460 | None:intergenic | 25.0% |
| ! | AACGAACTGATGTATTTAAA+CGG | - | chr1.3:54827901-54827920 | MS.gene85579:intron | 25.0% |
| ! | AGCATACAATAATGTTCTAA+AGG | + | chr1.3:54827094-54827113 | None:intergenic | 25.0% |
| ! | GAAAATTATTATGGCAAGTA+AGG | + | chr1.3:54827133-54827152 | None:intergenic | 25.0% |
| ! | GAGATAAAGATAAACGTATA+TGG | - | chr1.3:54826705-54826724 | MS.gene85579:intron | 25.0% |
| ! | TTACAATTACATACATGGTA+TGG | - | chr1.3:54827274-54827293 | MS.gene85579:intron | 25.0% |
| ! | TTATCATTTATAAACACGGA+GGG | - | chr1.3:54828041-54828060 | MS.gene85579:intron | 25.0% |
| ! | TTGTATGCTTAATTTCACTT+TGG | - | chr1.3:54827105-54827124 | MS.gene85579:intron | 25.0% |
| ! | TTGTTAATATCTCTTGTTAG+TGG | - | chr1.3:54827064-54827083 | MS.gene85579:intron | 25.0% |
| ! | TTTATCATTTATAAACACGG+AGG | - | chr1.3:54828040-54828059 | MS.gene85579:intron | 25.0% |
| !! | ATATATAGGACTTGTTTGAA+AGG | - | chr1.3:54826825-54826844 | MS.gene85579:intron | 25.0% |
| !! | ATCCTTTTACTATGGAATTA+TGG | + | chr1.3:54828109-54828128 | None:intergenic | 25.0% |
| !! | CTTAAAGCACAAAATTGTTT+TGG | - | chr1.3:54826590-54826609 | MS.gene85579:CDS | 25.0% |
| !! | GTTATTTGTACACAATTTTG+GGG | - | chr1.3:54828342-54828361 | MS.gene85579:intron | 25.0% |
| !! | TTCTACTTTGTAAAGTATCA+TGG | - | chr1.3:54827954-54827973 | MS.gene85579:intron | 25.0% |
| AAATGACCATAATGAAACAC+AGG | - | chr1.3:54827025-54827044 | MS.gene85579:intron | 30.0% | |
| AATTGCAATGTATACCAGTT+TGG | - | chr1.3:54828171-54828190 | MS.gene85579:intron | 30.0% | |
| ATTAAATGGCAGATTGACAT+AGG | + | chr1.3:54827221-54827240 | None:intergenic | 30.0% | |
| ATTGATATTCAACCTGCAAT+AGG | + | chr1.3:54826411-54826430 | None:intergenic | 30.0% | |
| ATTGCAATGTATACCAGTTT+GGG | - | chr1.3:54828172-54828191 | MS.gene85579:intron | 30.0% | |
| CTTATCTGTTTGCATCTTAA+TGG | - | chr1.3:54827352-54827371 | MS.gene85579:intron | 30.0% | |
| GCAATTCACAGTAACAAATA+GGG | + | chr1.3:54828157-54828176 | None:intergenic | 30.0% | |
| GGAAATTAGTGATAATTGTG+GGG | - | chr1.3:54828363-54828382 | MS.gene85579:intron | 30.0% | |
| GGGAAATTAGTGATAATTGT+GGG | - | chr1.3:54828362-54828381 | MS.gene85579:intron | 30.0% | |
| TCAACTTGAAATGAAAACAC+CGG | + | chr1.3:54827183-54827202 | None:intergenic | 30.0% | |
| TGCAATTCACAGTAACAAAT+AGG | + | chr1.3:54828158-54828177 | None:intergenic | 30.0% | |
| TTACAACAACCCGATAAAAT+GGG | + | chr1.3:54826332-54826351 | None:intergenic | 30.0% | |
| ! | GAATTTTCTGTGTTTACGAT+AGG | - | chr1.3:54827296-54827315 | MS.gene85579:intron | 30.0% |
| ! | TTCATTTGGGGTATACTTTA+TGG | - | chr1.3:54826557-54826576 | MS.gene85579:intron | 30.0% |
| !!! | TTTTTTGTTCCTAGCTCTAA+GGG | + | chr1.3:54826923-54826942 | None:intergenic | 30.0% |
| AAAAACACTAGTATGGTGAG+GGG | - | chr1.3:54827631-54827650 | MS.gene85579:intron | 35.0% | |
| AAAAACACTAGTATGGTGAG+GGG | + | chr1.3:54827650-54827631 | None:intergenic | 35.0% | |
| AAACACCGGAAAAACTTACA+CGG | + | chr1.3:54827169-54827188 | None:intergenic | 35.0% | |
| ACCATAATGAAACACAGGTT+TGG | - | chr1.3:54827030-54827049 | MS.gene85579:intron | 35.0% | |
| ACCATCAACTTCTTTGTCAT+TGG | + | chr1.3:54828561-54828580 | None:intergenic | 35.0% | |
| ACTGTAACAGATAGCTCAAT+TGG | + | chr1.3:54827837-54827856 | None:intergenic | 35.0% | |
| AGGCAGGTTTACAAATGAAA+CGG | - | chr1.3:54828480-54828499 | MS.gene85579:CDS | 35.0% | |
| CAAAAACACTAGTATGGTGA+GGG | - | chr1.3:54827630-54827649 | MS.gene85579:intron | 35.0% | |
| CAAAAACACTAGTATGGTGA+GGG | + | chr1.3:54827649-54827630 | None:intergenic | 35.0% | |
| CAAATATAGTGTACTCCGTT+TGG | - | chr1.3:54826651-54826670 | MS.gene85579:intron | 35.0% | |
| CAATACCTAAAGAACATGAG+GGG | + | chr1.3:54828410-54828429 | None:intergenic | 35.0% | |
| CCAATACCTAAAGAACATGA+GGG | + | chr1.3:54828411-54828430 | None:intergenic | 35.0% | |
| CTGATTTCTGTTCTCAGTAT+GGG | - | chr1.3:54827328-54827347 | MS.gene85579:intron | 35.0% | |
| GGCCATAATTCCATAGTAAA+AGG | - | chr1.3:54828104-54828123 | MS.gene85579:intron | 35.0% | |
| GGGGAAATTAGTGATAATTG+TGG | - | chr1.3:54828361-54828380 | MS.gene85579:intron | 35.0% | |
| GGTTTACAAATGAAACGGAA+AGG | - | chr1.3:54828485-54828504 | MS.gene85579:CDS | 35.0% | |
| GTGAATGTCTAAGAGAGTTT+GGG | - | chr1.3:54826864-54826883 | MS.gene85579:intron | 35.0% | |
| GTTACAACAACCCGATAAAA+TGG | + | chr1.3:54826333-54826352 | None:intergenic | 35.0% | |
| TAATCAATGACCCAAACTGT+TGG | - | chr1.3:54828083-54828102 | MS.gene85579:intron | 35.0% | |
| TATCTTCTGCAACATCCAAA+CGG | + | chr1.3:54826669-54826688 | None:intergenic | 35.0% | |
| TCAACTTCTTTGTCATTGGA+TGG | + | chr1.3:54828557-54828576 | None:intergenic | 35.0% | |
| TCCAAACCTGTGTTTCATTA+TGG | + | chr1.3:54827034-54827053 | None:intergenic | 35.0% | |
| TCCAATGACAAAGAAGTTGA+TGG | - | chr1.3:54828557-54828576 | MS.gene85579:CDS | 35.0% | |
| TGTGAATGTCTAAGAGAGTT+TGG | - | chr1.3:54826863-54826882 | MS.gene85579:intron | 35.0% | |
| TTAAGCTTATTGTAACAGCC+CGG | + | chr1.3:54827721-54827740 | None:intergenic | 35.0% | |
| TTACAAATGAAACGGAAAGG+TGG | - | chr1.3:54828488-54828507 | MS.gene85579:CDS | 35.0% | |
| TTGAATAAAAGACTCTCCAC+AGG | + | chr1.3:54828461-54828480 | None:intergenic | 35.0% | |
| ! | ATTTGGGGTATACTTTATGG+TGG | - | chr1.3:54826560-54826579 | MS.gene85579:intron | 35.0% |
| ! | TGTGGAGAGTCTTTTATTCA+AGG | - | chr1.3:54828460-54828479 | MS.gene85579:intron | 35.0% |
| ! | TTGTTCCGTGTAAGTTTTTC+CGG | - | chr1.3:54827161-54827180 | MS.gene85579:intron | 35.0% |
| !! | CTTTTTCGCTAATGAGTAGT+GGG | - | chr1.3:54826788-54826807 | MS.gene85579:intron | 35.0% |
| !! | TTTAGGTATTGGCTTTCTGT+TGG | - | chr1.3:54828419-54828438 | MS.gene85579:intron | 35.0% |
| !!! | CGGAGAAACACGTTTTTTTA+TGG | - | chr1.3:54826765-54826784 | MS.gene85579:intron | 35.0% |
| !!! | GTTTTTTGTTCCTAGCTCTA+AGG | + | chr1.3:54826924-54826943 | None:intergenic | 35.0% |
| AAAACACTAGTATGGTGAGG+GGG | - | chr1.3:54827632-54827651 | MS.gene85579:intron | 40.0% | |
| AAAACACTAGTATGGTGAGG+GGG | + | chr1.3:54827651-54827632 | None:intergenic | 40.0% | |
| ACAGATAGCTCAATTGGTAG+TGG | + | chr1.3:54827831-54827850 | None:intergenic | 40.0% | |
| ACTTAGTAGTTGTAACAGCC+CGG | - | chr1.3:54827375-54827394 | MS.gene85579:intron | 40.0% | |
| AGTATTCGATTAGCGAGACT+TGG | - | chr1.3:54826294-54826313 | MS.gene85579:CDS | 40.0% | |
| CCATACTGAGAACAGAAATC+AGG | + | chr1.3:54827330-54827349 | None:intergenic | 40.0% | |
| CCCTCATGTTCTTTAGGTAT+TGG | - | chr1.3:54828408-54828427 | MS.gene85579:intron | 40.0% | |
| CCTGATTTCTGTTCTCAGTA+TGG | - | chr1.3:54827327-54827346 | MS.gene85579:intron | 40.0% | |
| CTAGAAAGTGACCTGATAGA+GGG | - | chr1.3:54828010-54828029 | MS.gene85579:intron | 40.0% | |
| GATAGCAAATGTGCAAGAGA+TGG | - | chr1.3:54826354-54826373 | MS.gene85579:CDS | 40.0% | |
| GCAAAAACACTAGTATGGTG+AGG | - | chr1.3:54827629-54827648 | MS.gene85579:intron | 40.0% | |
| GCAAAAACACTAGTATGGTG+AGG | + | chr1.3:54827648-54827629 | None:intergenic | 40.0% | |
| GCCAATACCTAAAGAACATG+AGG | + | chr1.3:54828412-54828431 | None:intergenic | 40.0% | |
| GGAATTATGGCCAACAGTTT+GGG | + | chr1.3:54828096-54828115 | None:intergenic | 40.0% | |
| GGCAAGAACATTGAAGTTGT+TGG | - | chr1.3:54826375-54826394 | MS.gene85579:CDS | 40.0% | |
| GGCAGATTGACATAGGTTAT+AGG | + | chr1.3:54827214-54827233 | None:intergenic | 40.0% | |
| GGTTACTACAATCCTATTGC+AGG | - | chr1.3:54826396-54826415 | MS.gene85579:CDS | 40.0% | |
| GTGATAATTGTGGGGATCAT+TGG | - | chr1.3:54828371-54828390 | MS.gene85579:intron | 40.0% | |
| TAGAAAGTGACCTGATAGAG+GGG | - | chr1.3:54828011-54828030 | MS.gene85579:intron | 40.0% | |
| TGGAATTATGGCCAACAGTT+TGG | + | chr1.3:54828097-54828116 | None:intergenic | 40.0% | |
| TTGAAGTAGTACTTATCCCC+AGG | - | chr1.3:54827582-54827601 | MS.gene85579:intron | 40.0% | |
| TTGAAGTAGTACTTATCCCC+AGG | + | chr1.3:54827601-54827582 | None:intergenic | 40.0% | |
| TTTAGCTATCCCTTAGAGCT+AGG | - | chr1.3:54826911-54826930 | MS.gene85579:intron | 40.0% | |
| ! | CACACACAACCCATTTTATC+GGG | - | chr1.3:54826320-54826339 | MS.gene85579:CDS | 40.0% |
| ! | CAGATAGCTCAATTGGTAGT+GGG | + | chr1.3:54827830-54827849 | None:intergenic | 40.0% |
| ! | GAGAGTCTTTTATTCAAGGC+AGG | - | chr1.3:54828464-54828483 | MS.gene85579:intron | 40.0% |
| ! | GCACACACAACCCATTTTAT+CGG | - | chr1.3:54826319-54826338 | MS.gene85579:CDS | 40.0% |
| ! | TATACCAGTTTGGGATGAGA+AGG | - | chr1.3:54828181-54828200 | MS.gene85579:intron | 40.0% |
| !! | AAACGGATTGAAGTCACTTG+AGG | - | chr1.3:54827918-54827937 | MS.gene85579:intron | 40.0% |
| !!! | GCTTTTTCGCTAATGAGTAG+TGG | - | chr1.3:54826787-54826806 | MS.gene85579:intron | 40.0% |
| AACATGAGGGGAGGTTAAGA+TGG | + | chr1.3:54828398-54828417 | None:intergenic | 45.0% | |
| AACCTCCCCTCATGTTCTTT+AGG | - | chr1.3:54828402-54828421 | MS.gene85579:intron | 45.0% | |
| ACCAATGGAGCTAGCTCAAT+TGG | - | chr1.3:54827546-54827565 | MS.gene85579:intron | 45.0% | |
| ACCAATTGAGCTAGCTCCAT+TGG | + | chr1.3:54827550-54827569 | None:intergenic | 45.0% | |
| AGTACTTATCCCCAGGTACT+AGG | - | chr1.3:54827589-54827608 | MS.gene85579:intron | 45.0% | |
| AGTACTTATCCCCAGGTACT+AGG | + | chr1.3:54827608-54827589 | None:intergenic | 45.0% | |
| CAATGCATTCCCACTACCAA+TGG | - | chr1.3:54827531-54827550 | MS.gene85579:intron | 45.0% | |
| GCTAGAAAGTGACCTGATAG+AGG | - | chr1.3:54828009-54828028 | MS.gene85579:intron | 45.0% | |
| GGGAGGCAAAAACACTAGTA+TGG | - | chr1.3:54827624-54827643 | MS.gene85579:intron | 45.0% | |
| GGGAGGCAAAAACACTAGTA+TGG | + | chr1.3:54827643-54827624 | None:intergenic | 45.0% | |
| TACCTAAAGAACATGAGGGG+AGG | + | chr1.3:54828407-54828426 | None:intergenic | 45.0% | |
| TTGTGAGTAACAGTGCAGTG+CGG | - | chr1.3:54827668-54827687 | MS.gene85579:intron | 45.0% | |
| TTGTGAGTAACAGTGCAGTG+CGG | + | chr1.3:54827687-54827668 | None:intergenic | 45.0% | |
| ! | GAGCTAGCTCAATTGGTAGT+GGG | - | chr1.3:54827553-54827572 | MS.gene85579:intron | 45.0% |
| AGCTTATTGTAACAGCCCGG+TGG | + | chr1.3:54827718-54827737 | None:intergenic | 50.0% | |
| AGTAGTTGTAACAGCCCGGT+GGG | - | chr1.3:54827379-54827398 | MS.gene85579:intron | 50.0% | |
| GCTTATTGTAACAGCCCGGT+GGG | + | chr1.3:54827717-54827736 | None:intergenic | 50.0% | |
| GGAATCGAACCTAGTACCTG+GGG | - | chr1.3:54827495-54827514 | MS.gene85579:intron | 50.0% | |
| GGAATCGAACCTAGTACCTG+GGG | + | chr1.3:54827514-54827495 | None:intergenic | 50.0% | |
| GGAGCTAGCTCAATTGGTAG+TGG | - | chr1.3:54827552-54827571 | MS.gene85579:intron | 50.0% | |
| GGGAATCGAACCTAGTACCT+GGG | - | chr1.3:54827494-54827513 | MS.gene85579:intron | 50.0% | |
| GGGAATCGAACCTAGTACCT+GGG | + | chr1.3:54827513-54827494 | None:intergenic | 50.0% | |
| GGTACTAGGTTCGATTCCCA+CGG | - | chr1.3:54827603-54827622 | MS.gene85579:intron | 50.0% | |
| GGTACTAGGTTCGATTCCCA+CGG | + | chr1.3:54827622-54827603 | None:intergenic | 50.0% | |
| GTACTAGGTTCGATTCCCAC+GGG | - | chr1.3:54827604-54827623 | MS.gene85579:intron | 50.0% | |
| GTACTAGGTTCGATTCCCAC+GGG | + | chr1.3:54827623-54827604 | None:intergenic | 50.0% | |
| TAAAACCAGGCCCCTCTATC+AGG | + | chr1.3:54828024-54828043 | None:intergenic | 50.0% | |
| TAGTAGTTGTAACAGCCCGG+TGG | - | chr1.3:54827378-54827397 | MS.gene85579:intron | 50.0% | |
| TGAGCTAGCTCCATTGGTAG+TGG | + | chr1.3:54827544-54827563 | None:intergenic | 50.0% | |
| TGCTCAACCTTCAGAACCTG+TGG | - | chr1.3:54828442-54828461 | MS.gene85579:intron | 50.0% | |
| TGGGAATCGAACCTAGTACC+TGG | - | chr1.3:54827493-54827512 | MS.gene85579:intron | 50.0% | |
| TGGGAATCGAACCTAGTACC+TGG | + | chr1.3:54827512-54827493 | None:intergenic | 50.0% | |
| TTGGATGGCTGCTCTTCGTT+CGG | + | chr1.3:54828542-54828561 | None:intergenic | 50.0% | |
| ! | ACCAGTTTGGGATGAGAAGG+AGG | - | chr1.3:54828184-54828203 | MS.gene85579:intron | 50.0% |
| ! | AGACTCTCCACAGGTTCTGA+AGG | + | chr1.3:54828452-54828471 | None:intergenic | 50.0% |
| ! | CCAGTTTGGGATGAGAAGGA+GGG | - | chr1.3:54828185-54828204 | MS.gene85579:intron | 50.0% |
| ! | CTTCGTTCGGGGTATCAACA+GGG | + | chr1.3:54828529-54828548 | None:intergenic | 50.0% |
| ! | GAGCTAGCTCCATTGGTAGT+GGG | + | chr1.3:54827543-54827562 | None:intergenic | 50.0% |
| ! | TCTTCGTTCGGGGTATCAAC+AGG | + | chr1.3:54828530-54828549 | None:intergenic | 50.0% |
| !! | AAACGGAAAGGTGGACTGTC+TGG | - | chr1.3:54828497-54828516 | MS.gene85579:CDS | 50.0% |
| !! | ACTAGTGTTTTTGCCTCCCG+TGG | - | chr1.3:54827473-54827492 | MS.gene85579:intron | 50.0% |
| !! | ACTAGTGTTTTTGCCTCCCG+TGG | + | chr1.3:54827492-54827473 | None:intergenic | 50.0% |
| !! | CTAGTGTTTTTGCCTCCCGT+GGG | - | chr1.3:54827474-54827493 | MS.gene85579:intron | 50.0% |
| !! | CTAGTGTTTTTGCCTCCCGT+GGG | + | chr1.3:54827493-54827474 | None:intergenic | 50.0% |
| CCCTCCTTCTCATCCCAAAC+TGG | + | chr1.3:54828188-54828207 | None:intergenic | 55.0% | |
| GAGTAACAGTGCAGTGCGGT+GGG | - | chr1.3:54827672-54827691 | MS.gene85579:intron | 55.0% | |
| GAGTAACAGTGCAGTGCGGT+GGG | + | chr1.3:54827691-54827672 | None:intergenic | 55.0% | |
| TGAGTAACAGTGCAGTGCGG+TGG | - | chr1.3:54827671-54827690 | MS.gene85579:intron | 55.0% | |
| TGAGTAACAGTGCAGTGCGG+TGG | + | chr1.3:54827690-54827671 | None:intergenic | 55.0% | |
| TGGATGGCTGCTCTTCGTTC+GGG | + | chr1.3:54828541-54828560 | None:intergenic | 55.0% | |
| AGTGACCTGATAGAGGGGCC+TGG | - | chr1.3:54828016-54828035 | MS.gene85579:intron | 60.0% | |
| CTAGGTTCGATTCCCACGGG+AGG | - | chr1.3:54827607-54827626 | MS.gene85579:intron | 60.0% | |
| CTAGGTTCGATTCCCACGGG+AGG | + | chr1.3:54827626-54827607 | None:intergenic | 60.0% | |
| GGATGGCTGCTCTTCGTTCG+GGG | + | chr1.3:54828540-54828559 | None:intergenic | 60.0% | |
| GTGGGTGCAGTGCCTTGCGA+GGG | - | chr1.3:54827690-54827709 | MS.gene85579:intron | 65.0% | |
| GTGGGTGCAGTGCCTTGCGA+GGG | + | chr1.3:54827709-54827690 | None:intergenic | 65.0% | |
| TGGGTGCAGTGCCTTGCGAG+GGG | - | chr1.3:54827691-54827710 | MS.gene85579:intron | 65.0% | |
| TGGGTGCAGTGCCTTGCGAG+GGG | + | chr1.3:54827710-54827691 | None:intergenic | 65.0% | |
| GGTGGGTGCAGTGCCTTGCG+AGG | - | chr1.3:54827689-54827708 | MS.gene85579:intron | 70.0% | |
| GGTGGGTGCAGTGCCTTGCG+AGG | + | chr1.3:54827708-54827689 | None:intergenic | 70.0% | |
| GTGCCTTGCGAGGGGCCCAC+CGG | - | chr1.3:54827699-54827718 | MS.gene85579:intron | 75.0% | |
| GTGCCTTGCGAGGGGCCCAC+CGG | + | chr1.3:54827718-54827699 | None:intergenic | 75.0% | |
| TGCCTTGCGAGGGGCCCACC+GGG | - | chr1.3:54827700-54827719 | MS.gene85579:intron | 75.0% | |
| TGCCTTGCGAGGGGCCCACC+GGG | + | chr1.3:54827719-54827700 | None:intergenic | 75.0% | |
| ! | AGCCCGGTGGGCCCCTCGCA+AGG | - | chr1.3:54827391-54827410 | MS.gene85579:intron | 80.0% |
| ! | AGCCCGGTGGGCCCCTCGCA+AGG | + | chr1.3:54827410-54827391 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54826285 | 54828604 | 54826285 | ID=MS.gene85579 |
| chr1.3 | mRNA | 54826285 | 54828604 | 54826285 | ID=MS.gene85579.t1;Parent=MS.gene85579 |
| chr1.3 | exon | 54828472 | 54828604 | 54828472 | ID=MS.gene85579.t1.exon1;Parent=MS.gene85579.t1 |
| chr1.3 | CDS | 54828472 | 54828604 | 54828472 | ID=cds.MS.gene85579.t1;Parent=MS.gene85579.t1 |
| chr1.3 | exon | 54826581 | 54826626 | 54826581 | ID=MS.gene85579.t1.exon2;Parent=MS.gene85579.t1 |
| chr1.3 | CDS | 54826581 | 54826626 | 54826581 | ID=cds.MS.gene85579.t1;Parent=MS.gene85579.t1 |
| chr1.3 | exon | 54826285 | 54826465 | 54826285 | ID=MS.gene85579.t1.exon3;Parent=MS.gene85579.t1 |
| chr1.3 | CDS | 54826285 | 54826465 | 54826285 | ID=cds.MS.gene85579.t1;Parent=MS.gene85579.t1 |
| Gene Sequence |
| Protein sequence |
