Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36048.t1 | XP_003628554.1 | 96 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 1.20E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36048.t1 | Q9ASV6 | 62.1 | 169 | 58 | 3 | 1 | 167 | 23 | 187 | 6.8e-42 | 171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36048.t1 | G7LDS2 | 96.0 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 8.4e-78 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene36048 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene36048 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene36048 | 0.836706 | 7.99E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene36048 | 0.806416 | 8.32E-50 | -1.69E-46 |
| MS.gene049389 | MS.gene36048 | 0.84756 | 1.07E-59 | -1.69E-46 |
| MS.gene049427 | MS.gene36048 | 0.800761 | 1.24E-48 | -1.69E-46 |
| MS.gene049491 | MS.gene36048 | 0.841588 | 4.34E-58 | -1.69E-46 |
| MS.gene049599 | MS.gene36048 | -0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene049614 | MS.gene36048 | 0.81528 | 1.00E-51 | -1.69E-46 |
| MS.gene049661 | MS.gene36048 | 0.84761 | 1.04E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene36048 | 0.850894 | 1.26E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene36048 | 0.913214 | 7.97E-84 | -1.69E-46 |
| MS.gene049760 | MS.gene36048 | 0.803988 | 2.68E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene36048 | 0.841714 | 4.02E-58 | -1.69E-46 |
| MS.gene050099 | MS.gene36048 | 0.832034 | 1.19E-55 | -1.69E-46 |
| MS.gene050128 | MS.gene36048 | 0.886555 | 3.09E-72 | -1.69E-46 |
| MS.gene050301 | MS.gene36048 | 0.899288 | 2.30E-77 | -1.69E-46 |
| MS.gene050397 | MS.gene36048 | 0.855947 | 4.48E-62 | -1.69E-46 |
| MS.gene050404 | MS.gene36048 | 0.812734 | 3.65E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene36048 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene36048 | 0.863276 | 2.79E-64 | -1.69E-46 |
| MS.gene050464 | MS.gene36048 | 0.822818 | 1.93E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene36048 | 0.847553 | 1.08E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene36048 | 0.807329 | 5.33E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene36048 | 0.844465 | 7.44E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene36048 | 0.848786 | 4.91E-60 | -1.69E-46 |
| MS.gene05101 | MS.gene36048 | 0.860063 | 2.68E-63 | -1.69E-46 |
| MS.gene05105 | MS.gene36048 | 0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene36048 | 0.87924 | 1.46E-69 | -1.69E-46 |
| MS.gene051662 | MS.gene36048 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene36048 | 0.826833 | 2.18E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene36048 | 0.835081 | 2.06E-56 | -1.69E-46 |
| MS.gene051877 | MS.gene36048 | 0.811427 | 7.04E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene36048 | 0.881543 | 2.20E-70 | -1.69E-46 |
| MS.gene052178 | MS.gene36048 | 0.874901 | 4.70E-68 | -1.69E-46 |
| MS.gene052188 | MS.gene36048 | 0.866445 | 2.84E-65 | -1.69E-46 |
| MS.gene052207 | MS.gene36048 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene36048 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene052287 | MS.gene36048 | 0.812261 | 4.64E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene36048 | 0.8422 | 2.99E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene36048 | 0.863722 | 2.03E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene36048 | 0.81394 | 1.98E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene36048 | 0.874547 | 6.20E-68 | -1.69E-46 |
| MS.gene052340 | MS.gene36048 | 0.857314 | 1.78E-62 | -1.69E-46 |
| MS.gene052484 | MS.gene36048 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene36048 | 0.825028 | 5.86E-54 | -1.69E-46 |
| MS.gene053073 | MS.gene36048 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene36048 | 0.824953 | 6.10E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene36048 | 0.809226 | 2.10E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene36048 | 0.805228 | 1.48E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene36048 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene36048 | 0.887502 | 1.35E-72 | -1.69E-46 |
| MS.gene053322 | MS.gene36048 | 0.826111 | 3.25E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene36048 | 0.867602 | 1.21E-65 | -1.69E-46 |
| MS.gene053559 | MS.gene36048 | 0.808421 | 3.12E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene36048 | 0.877178 | 7.74E-69 | -1.69E-46 |
| MS.gene053928 | MS.gene36048 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene36048 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene36048 | 0.801873 | 7.33E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene36048 | 0.86267 | 4.30E-64 | -1.69E-46 |
| MS.gene054376 | MS.gene36048 | 0.854308 | 1.34E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene36048 | 0.808716 | 2.70E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene36048 | 0.833233 | 6.00E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene36048 | 0.830332 | 3.12E-55 | -1.69E-46 |
| MS.gene054803 | MS.gene36048 | 0.832974 | 6.96E-56 | -1.69E-46 |
| MS.gene054804 | MS.gene36048 | 0.833176 | 6.20E-56 | -1.69E-46 |
| MS.gene054955 | MS.gene36048 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene36048 | 0.843052 | 1.78E-58 | -1.69E-46 |
| MS.gene055254 | MS.gene36048 | 0.847592 | 1.05E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene36048 | 0.897438 | 1.41E-76 | -1.69E-46 |
| MS.gene055390 | MS.gene36048 | 0.877623 | 5.41E-69 | -1.69E-46 |
| MS.gene055397 | MS.gene36048 | 0.801466 | 8.88E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene36048 | 0.801261 | 9.79E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene36048 | 0.90175 | 1.95E-78 | -1.69E-46 |
| MS.gene055428 | MS.gene36048 | 0.869686 | 2.57E-66 | -1.69E-46 |
| MS.gene055499 | MS.gene36048 | 0.805165 | 1.52E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene36048 | 0.816342 | 5.81E-52 | -1.69E-46 |
| MS.gene055712 | MS.gene36048 | 0.839426 | 1.60E-57 | -1.69E-46 |
| MS.gene055859 | MS.gene36048 | 0.81588 | 7.37E-52 | -1.69E-46 |
| MS.gene055896 | MS.gene36048 | 0.82572 | 4.02E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene36048 | 0.814452 | 1.53E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene36048 | 0.832962 | 7.01E-56 | -1.69E-46 |
| MS.gene056314 | MS.gene36048 | 0.831081 | 2.04E-55 | -1.69E-46 |
| MS.gene056407 | MS.gene36048 | 0.846937 | 1.59E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene36048 | 0.86802 | 8.90E-66 | -1.69E-46 |
| MS.gene056609 | MS.gene36048 | 0.857832 | 1.25E-62 | -1.69E-46 |
| MS.gene056612 | MS.gene36048 | 0.875169 | 3.81E-68 | -1.69E-46 |
| MS.gene056659 | MS.gene36048 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene36048 | 0.80989 | 1.51E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene36048 | 0.825031 | 5.85E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene36048 | 0.805133 | 1.55E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene36048 | 0.843669 | 1.22E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene36048 | 0.81782 | 2.70E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene36048 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene36048 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene36048 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene36048 | 0.839295 | 1.73E-57 | -1.69E-46 |
| MS.gene05733 | MS.gene36048 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene36048 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene36048 | 0.850295 | 1.86E-60 | -1.69E-46 |
| MS.gene057449 | MS.gene36048 | 0.848215 | 7.07E-60 | -1.69E-46 |
| MS.gene057450 | MS.gene36048 | 0.858761 | 6.60E-63 | -1.69E-46 |
| MS.gene057796 | MS.gene36048 | 0.81549 | 9.00E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene36048 | 0.870773 | 1.13E-66 | -1.69E-46 |
| MS.gene058006 | MS.gene36048 | 0.804771 | 1.84E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene36048 | 0.885812 | 5.89E-72 | -1.69E-46 |
| MS.gene05811 | MS.gene36048 | 0.891081 | 5.50E-74 | -1.69E-46 |
| MS.gene058142 | MS.gene36048 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene36048 | 0.81355 | 2.42E-51 | -1.69E-46 |
| MS.gene058276 | MS.gene36048 | 0.818202 | 2.22E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene36048 | 0.878876 | 1.97E-69 | -1.69E-46 |
| MS.gene058365 | MS.gene36048 | 0.836501 | 9.02E-57 | -1.69E-46 |
| MS.gene05842 | MS.gene36048 | 0.808903 | 2.46E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene36048 | 0.880996 | 3.46E-70 | -1.69E-46 |
| MS.gene058787 | MS.gene36048 | 0.86236 | 5.36E-64 | -1.69E-46 |
| MS.gene058845 | MS.gene36048 | 0.856628 | 2.83E-62 | -1.69E-46 |
| MS.gene058928 | MS.gene36048 | 0.814712 | 1.34E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene36048 | 0.87225 | 3.67E-67 | -1.69E-46 |
| MS.gene059228 | MS.gene36048 | 0.811715 | 6.10E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene36048 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene36048 | 0.857024 | 2.16E-62 | -1.69E-46 |
| MS.gene059342 | MS.gene36048 | 0.855612 | 5.61E-62 | -1.69E-46 |
| MS.gene059518 | MS.gene36048 | 0.867923 | 9.56E-66 | -1.69E-46 |
| MS.gene059536 | MS.gene36048 | 0.825011 | 5.92E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene36048 | 0.863199 | 2.95E-64 | -1.69E-46 |
| MS.gene05959 | MS.gene36048 | 0.85909 | 5.26E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene36048 | 0.866899 | 2.03E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene36048 | 0.857516 | 1.55E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene36048 | 0.879717 | 9.92E-70 | -1.69E-46 |
| MS.gene059695 | MS.gene36048 | 0.876902 | 9.65E-69 | -1.69E-46 |
| MS.gene059708 | MS.gene36048 | 0.871449 | 6.78E-67 | -1.69E-46 |
| MS.gene05984 | MS.gene36048 | 0.878058 | 3.82E-69 | -1.69E-46 |
| MS.gene059894 | MS.gene36048 | 0.889978 | 1.49E-73 | -1.69E-46 |
| MS.gene059899 | MS.gene36048 | 0.827941 | 1.18E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene36048 | 0.830592 | 2.69E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene36048 | 0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene060005 | MS.gene36048 | 0.841954 | 3.47E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene36048 | 0.870717 | 1.18E-66 | -1.69E-46 |
| MS.gene060407 | MS.gene36048 | 0.805588 | 1.24E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene36048 | 0.809956 | 1.46E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene36048 | 0.822703 | 2.05E-53 | -1.69E-46 |
| MS.gene060559 | MS.gene36048 | 0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene36048 | 0.825926 | 3.59E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene36048 | 0.815981 | 7.00E-52 | -1.69E-46 |
| MS.gene06090 | MS.gene36048 | 0.823965 | 1.04E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene36048 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene36048 | 0.882739 | 8.09E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene36048 | -0.871664 | 5.75E-67 | -1.69E-46 |
| MS.gene061112 | MS.gene36048 | 0.802033 | 6.80E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene36048 | 0.801582 | 8.41E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene36048 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene36048 | 0.803397 | 3.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36048.t1 | MTR_8g061350 | 95.954 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 4.86e-110 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36048.t1 | AT3G15190 | 77.876 | 113 | 23 | 1 | 57 | 167 | 75 | 187 | 1.26e-56 | 177 |
Find 41 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTACTGCCTTCTTTCTTC+TGG | 0.196704 | 8.1:-52588915 | None:intergenic |
| ATAGCGGAATCAACTTTCTT+TGG | 0.240354 | 8.1:-52587660 | None:intergenic |
| CCTAACTTCATCATCAAATT+CGG | 0.266189 | 8.1:+52587527 | MS.gene36048:CDS |
| CCGAATTTGATGATGAAGTT+AGG | 0.293575 | 8.1:-52587527 | None:intergenic |
| CTCTAGACTGGGAAATGTTT+CGG | 0.313050 | 8.1:-52587566 | None:intergenic |
| TCTAGACTGGGAAATGTTTC+GGG | 0.313830 | 8.1:-52587565 | None:intergenic |
| TTACAGTTACGGTACCTTCT+TGG | 0.353552 | 8.1:-52587754 | None:intergenic |
| CTTGGTACGGGTTCTAATCT+CGG | 0.388971 | 8.1:-52587736 | None:intergenic |
| GCCTCAATTGAGAAGATGAT+TGG | 0.400874 | 8.1:+52588809 | MS.gene36048:CDS |
| CTAACTTCATCATCAAATTC+GGG | 0.410171 | 8.1:+52587528 | MS.gene36048:CDS |
| CGAATTTGATGATGAAGTTA+GGG | 0.438285 | 8.1:-52587526 | None:intergenic |
| CAGACACTGGCTTGAGGCAC+AGG | 0.442721 | 8.1:-52588959 | None:intergenic |
| AGGTATGTTATCTTTGAATA+CGG | 0.445037 | 8.1:+52587599 | MS.gene36048:CDS |
| TGAACCTTCCTTCGAAAATG+AGG | 0.476736 | 8.1:+52587496 | MS.gene36048:CDS |
| CTTGTGAAAGGACTCTAGAC+TGG | 0.483441 | 8.1:-52587578 | None:intergenic |
| GTTACGGTACCTTCTTGGTA+CGG | 0.485051 | 8.1:-52587749 | None:intergenic |
| CAGGGGCATACCAGCCATGA+TGG | 0.502689 | 8.1:-52588940 | None:intergenic |
| TCCAATCATCTTCTCAATTG+AGG | 0.507360 | 8.1:-52588810 | None:intergenic |
| TTACGGTACCTTCTTGGTAC+GGG | 0.515322 | 8.1:-52587748 | None:intergenic |
| TTGATGATGAAGTTAGGGTA+AGG | 0.521257 | 8.1:-52587521 | None:intergenic |
| AATCGACAAAGCAGTGAAAG+TGG | 0.542695 | 8.1:+52588847 | MS.gene36048:CDS |
| CAGTAGAGATCCATCATGGC+TGG | 0.548246 | 8.1:+52588930 | MS.gene36048:CDS |
| TCGGCTTGCCAGAAGAAAGA+AGG | 0.559181 | 8.1:+52588907 | MS.gene36048:CDS |
| AAGATAACATACCTTGTGAA+AGG | 0.576623 | 8.1:-52587590 | None:intergenic |
| CGGGAGCAAATCGCAAGTCT+CGG | 0.578912 | 8.1:+52588888 | MS.gene36048:CDS |
| AGACACTGGCTTGAGGCACA+GGG | 0.582207 | 8.1:-52588958 | None:intergenic |
| CAGTCTAGAGTCCTTTCACA+AGG | 0.588356 | 8.1:+52587579 | MS.gene36048:CDS |
| ATATAAAAGGATTCAGACAC+TGG | 0.591833 | 8.1:-52588972 | None:intergenic |
| GATTAGAACCCGTACCAAGA+AGG | 0.607531 | 8.1:+52587740 | MS.gene36048:CDS |
| ATCGACAAAGCAGTGAAAGT+GGG | 0.608479 | 8.1:+52588848 | MS.gene36048:CDS |
| AGAGAGCTCGTCAAGCTGAG+AGG | 0.642101 | 8.1:+52587685 | MS.gene36048:CDS |
| TTGTGAAAGGACTCTAGACT+GGG | 0.643097 | 8.1:-52587577 | None:intergenic |
| TTGAATACGGTGCAGAAGCG+TGG | 0.643767 | 8.1:+52587612 | MS.gene36048:CDS |
| GGGAACTTTGCATAGAAACA+CGG | 0.644538 | 8.1:+52588868 | MS.gene36048:CDS |
| AAGGCAGTAGAGATCCATCA+TGG | 0.646488 | 8.1:+52588926 | MS.gene36048:CDS |
| TGGTGTTGTTGTTGTTTGCG+AGG | 0.647337 | 8.1:+52587632 | MS.gene36048:CDS |
| AGGATTCAGACACTGGCTTG+AGG | 0.656971 | 8.1:-52588965 | None:intergenic |
| GGAACTTTGCATAGAAACAC+GGG | 0.657374 | 8.1:+52588869 | MS.gene36048:CDS |
| TTGACGAGCTCTCTTAATAG+CGG | 0.659609 | 8.1:-52587676 | None:intergenic |
| AATTGAGAAGATGATTGGAG+AGG | 0.673219 | 8.1:+52588814 | MS.gene36048:CDS |
| GACACTGGCTTGAGGCACAG+GGG | 0.714773 | 8.1:-52588957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr8.1:52587818-52587837 | MS.gene36048:intron | 15.0% |
| !! | AGAAATAGATGATAATATGA+TGG | + | chr8.1:52588248-52588267 | MS.gene36048:intron | 20.0% |
| !! | ATAGAATAGCTATAATAACA+TGG | + | chr8.1:52587907-52587926 | MS.gene36048:intron | 20.0% |
| !! | TGATAATATATGCAAGAAAA+GGG | + | chr8.1:52588217-52588236 | MS.gene36048:intron | 20.0% |
| !! | TGTAAATAAAACTACAAGTT+GGG | - | chr8.1:52588692-52588711 | None:intergenic | 20.0% |
| !! | TTATATGAGTTACACATTAT+GGG | - | chr8.1:52588173-52588192 | None:intergenic | 20.0% |
| !! | TTTCTTGCATATATTATCAA+TGG | - | chr8.1:52588216-52588235 | None:intergenic | 20.0% |
| !!! | GAAAACATGATTTGTATTTT+AGG | + | chr8.1:52588083-52588102 | MS.gene36048:intron | 20.0% |
| !!! | TTGATAATATATGCAAGAAA+AGG | + | chr8.1:52588216-52588235 | MS.gene36048:intron | 20.0% |
| ! | AGGTATGTTATCTTTGAATA+CGG | + | chr8.1:52587599-52587618 | MS.gene36048:CDS | 25.0% |
| ! | ATAACTTTCCTTGAGAAATT+TGG | + | chr8.1:52588189-52588208 | MS.gene36048:intron | 25.0% |
| ! | CTGTAAATAAAACTACAAGT+TGG | - | chr8.1:52588693-52588712 | None:intergenic | 25.0% |
| ! | GTAAATAAAACTACAAGTTG+GGG | - | chr8.1:52588691-52588710 | None:intergenic | 25.0% |
| ! | GTTATATGAGTTACACATTA+TGG | - | chr8.1:52588174-52588193 | None:intergenic | 25.0% |
| ! | TAATTATATAACTTGAGCGA+AGG | - | chr8.1:52588033-52588052 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTATTGGTGT+CGG | + | chr8.1:52587824-52587843 | MS.gene36048:intron | 25.0% |
| ! | TCTTACTTTCAATTGTTTGT+AGG | + | chr8.1:52588730-52588749 | MS.gene36048:intron | 25.0% |
| !! | AAAATTGATTCCATAGCTTT+AGG | + | chr8.1:52587976-52587995 | MS.gene36048:intron | 25.0% |
| !! | AAATTGATTCCATAGCTTTA+GGG | + | chr8.1:52587977-52587996 | MS.gene36048:intron | 25.0% |
| !! | AATAGTTCAAGTTACAGTTA+CGG | - | chr8.1:52587768-52587787 | None:intergenic | 25.0% |
| !! | ATGATAATATGATGGAGTAT+GGG | + | chr8.1:52588256-52588275 | MS.gene36048:intron | 25.0% |
| !! | TTTCAATTGTTTGTAGGTTT+TGG | + | chr8.1:52588736-52588755 | MS.gene36048:intron | 25.0% |
| !!! | CAACTTGTAGTTTTATTTAC+AGG | + | chr8.1:52588691-52588710 | MS.gene36048:intron | 25.0% |
| !!! | CATGTTTTCAAGATGAAATT+GGG | - | chr8.1:52588072-52588091 | None:intergenic | 25.0% |
| !!! | TCATGTTTTCAAGATGAAAT+TGG | - | chr8.1:52588073-52588092 | None:intergenic | 25.0% |
| AAGATAACATACCTTGTGAA+AGG | - | chr8.1:52587593-52587612 | None:intergenic | 30.0% | |
| ATAGCTATTCTATGAAGAAC+TGG | - | chr8.1:52587900-52587919 | None:intergenic | 30.0% | |
| CAGAAACTAGAACTAAAACA+TGG | - | chr8.1:52588421-52588440 | None:intergenic | 30.0% | |
| CCTAACTTCATCATCAAATT+CGG | + | chr8.1:52587527-52587546 | MS.gene36048:CDS | 30.0% | |
| CTAACTTCATCATCAAATTC+GGG | + | chr8.1:52587528-52587547 | MS.gene36048:CDS | 30.0% | |
| TGACAATTCAACAGTTTAGA+AGG | + | chr8.1:52588387-52588406 | MS.gene36048:intron | 30.0% | |
| ! | AAGCTATGGAATCAATTTTC+AGG | - | chr8.1:52587975-52587994 | None:intergenic | 30.0% |
| ! | ATCATCAGAAAATGTTGCTT+CGG | - | chr8.1:52588312-52588331 | None:intergenic | 30.0% |
| ! | GATGATAATATGATGGAGTA+TGG | + | chr8.1:52588255-52588274 | MS.gene36048:intron | 30.0% |
| !! | CGAATTTGATGATGAAGTTA+GGG | - | chr8.1:52587529-52587548 | None:intergenic | 30.0% |
| AAAAACAAGAACACAACACC+TGG | - | chr8.1:52588117-52588136 | None:intergenic | 35.0% | |
| AAAACAAGAACACAACACCT+GGG | - | chr8.1:52588116-52588135 | None:intergenic | 35.0% | |
| AACAATAAGAATCCCTGACA+TGG | + | chr8.1:52588578-52588597 | MS.gene36048:intron | 35.0% | |
| AATTGAGAAGATGATTGGAG+AGG | + | chr8.1:52588814-52588833 | MS.gene36048:CDS | 35.0% | |
| ATGAAATTGGGTGATGACAA+TGG | - | chr8.1:52588060-52588079 | None:intergenic | 35.0% | |
| GTAGCTGATGTTATAATTGC+AGG | + | chr8.1:52588600-52588619 | MS.gene36048:intron | 35.0% | |
| GTGGAGTTTCATTATCTTAC+AGG | - | chr8.1:52588557-52588576 | None:intergenic | 35.0% | |
| TCAATGGTCCAAATTTCTCA+AGG | - | chr8.1:52588200-52588219 | None:intergenic | 35.0% | |
| TCAGGGATTCTTATTGTTTG+TGG | - | chr8.1:52588576-52588595 | None:intergenic | 35.0% | |
| TCCAATCATCTTCTCAATTG+AGG | - | chr8.1:52588813-52588832 | None:intergenic | 35.0% | |
| ! | ATAAAACTACAAGTTGGGGT+TGG | - | chr8.1:52588687-52588706 | None:intergenic | 35.0% |
| ! | ATAGCGGAATCAACTTTCTT+TGG | - | chr8.1:52587663-52587682 | None:intergenic | 35.0% |
| !! | CCGAATTTGATGATGAAGTT+AGG | - | chr8.1:52587530-52587549 | None:intergenic | 35.0% |
| !! | TTGATGATGAAGTTAGGGTA+AGG | - | chr8.1:52587524-52587543 | None:intergenic | 35.0% |
| AATCGACAAAGCAGTGAAAG+TGG | + | chr8.1:52588847-52588866 | MS.gene36048:CDS | 40.0% | |
| AGAGGGAAGTTTGAGTAACA+TGG | + | chr8.1:52588003-52588022 | MS.gene36048:intron | 40.0% | |
| ATAACATCAGCTACCATGTC+AGG | - | chr8.1:52588594-52588613 | None:intergenic | 40.0% | |
| ATCGACAAAGCAGTGAAAGT+GGG | + | chr8.1:52588848-52588867 | MS.gene36048:CDS | 40.0% | |
| CTCTAGACTGGGAAATGTTT+CGG | - | chr8.1:52587569-52587588 | None:intergenic | 40.0% | |
| GCCTCAATTGAGAAGATGAT+TGG | + | chr8.1:52588809-52588828 | MS.gene36048:CDS | 40.0% | |
| GGAACTTTGCATAGAAACAC+GGG | + | chr8.1:52588869-52588888 | MS.gene36048:CDS | 40.0% | |
| GGGAACTTTGCATAGAAACA+CGG | + | chr8.1:52588868-52588887 | MS.gene36048:CDS | 40.0% | |
| TAACATCAGCTACCATGTCA+GGG | - | chr8.1:52588593-52588612 | None:intergenic | 40.0% | |
| TCTAGACTGGGAAATGTTTC+GGG | - | chr8.1:52587568-52587587 | None:intergenic | 40.0% | |
| TGAACCTTCCTTCGAAAATG+AGG | + | chr8.1:52587496-52587515 | MS.gene36048:CDS | 40.0% | |
| TTACAGTTACGGTACCTTCT+TGG | - | chr8.1:52587757-52587776 | None:intergenic | 40.0% | |
| TTGACGAGCTCTCTTAATAG+CGG | - | chr8.1:52587679-52587698 | None:intergenic | 40.0% | |
| TTGTGAAAGGACTCTAGACT+GGG | - | chr8.1:52587580-52587599 | None:intergenic | 40.0% | |
| ! | ATGATGGAGTATGGGATAGT+GGG | + | chr8.1:52588264-52588283 | MS.gene36048:intron | 40.0% |
| ! | GTAAGGTTCCTCATTTTCGA+AGG | - | chr8.1:52587507-52587526 | None:intergenic | 40.0% |
| ! | TATGATGGAGTATGGGATAG+TGG | + | chr8.1:52588263-52588282 | MS.gene36048:intron | 40.0% |
| !! | CCATAGCTTTAGGGATTAGA+GGG | + | chr8.1:52587986-52588005 | MS.gene36048:intron | 40.0% |
| !! | TATTATTGGTGTCGGCATGT+TGG | + | chr8.1:52587832-52587851 | MS.gene36048:intron | 40.0% |
| !! | TCCATAGCTTTAGGGATTAG+AGG | + | chr8.1:52587985-52588004 | MS.gene36048:intron | 40.0% |
| !! | TGTTTCAAGTTACTGAACCC+TGG | + | chr8.1:52588332-52588351 | MS.gene36048:intron | 40.0% |
| !!! | TTTGTAGGTTTTGGAAGCAC+TGG | + | chr8.1:52588745-52588764 | MS.gene36048:intron | 40.0% |
| AAGGCAGTAGAGATCCATCA+TGG | + | chr8.1:52588926-52588945 | MS.gene36048:CDS | 45.0% | |
| CCCTCTAATCCCTAAAGCTA+TGG | - | chr8.1:52587989-52588008 | None:intergenic | 45.0% | |
| CTCTACTGCCTTCTTTCTTC+TGG | - | chr8.1:52588918-52588937 | None:intergenic | 45.0% | |
| CTTGTGAAAGGACTCTAGAC+TGG | - | chr8.1:52587581-52587600 | None:intergenic | 45.0% | |
| GATTAGAACCCGTACCAAGA+AGG | + | chr8.1:52587740-52587759 | MS.gene36048:CDS | 45.0% | |
| GTTACGGTACCTTCTTGGTA+CGG | - | chr8.1:52587752-52587771 | None:intergenic | 45.0% | |
| TTACGGTACCTTCTTGGTAC+GGG | - | chr8.1:52587751-52587770 | None:intergenic | 45.0% | |
| ! | CAGTCTAGAGTCCTTTCACA+AGG | + | chr8.1:52587579-52587598 | MS.gene36048:CDS | 45.0% |
| ! | CTTGGTACGGGTTCTAATCT+CGG | - | chr8.1:52587739-52587758 | None:intergenic | 45.0% |
| ! | GGTTCCTCATTTTCGAAGGA+AGG | - | chr8.1:52587503-52587522 | None:intergenic | 45.0% |
| ! | TTCAAGTTACTGAACCCTGG+AGG | + | chr8.1:52588335-52588354 | MS.gene36048:intron | 45.0% |
| !! | GTATTTTAGGTGTCAGACCC+AGG | + | chr8.1:52588096-52588115 | MS.gene36048:intron | 45.0% |
| !! | TGGGATAGTGGGAGAGAAAA+TGG | + | chr8.1:52588275-52588294 | MS.gene36048:intron | 45.0% |
| !! | TGGTGTTGTTGTTGTTTGCG+AGG | + | chr8.1:52587632-52587651 | MS.gene36048:CDS | 45.0% |
| ACTGGCACAAACACAGACAC+CGG | - | chr8.1:52587882-52587901 | None:intergenic | 50.0% | |
| AGGCGCAAATTAGGTGGTAC+TGG | + | chr8.1:52588355-52588374 | MS.gene36048:intron | 50.0% | |
| CAGTAGAGATCCATCATGGC+TGG | + | chr8.1:52588930-52588949 | MS.gene36048:CDS | 50.0% | |
| TTGAATACGGTGCAGAAGCG+TGG | + | chr8.1:52587612-52587631 | MS.gene36048:CDS | 50.0% | |
| ! | TCGGCTTGCCAGAAGAAAGA+AGG | + | chr8.1:52588907-52588926 | MS.gene36048:CDS | 50.0% |
| ACAGACACCGGACACAACAC+TGG | - | chr8.1:52587870-52587889 | None:intergenic | 55.0% | |
| AGAGAGCTCGTCAAGCTGAG+AGG | + | chr8.1:52587685-52587704 | MS.gene36048:CDS | 55.0% | |
| CGGGAGCAAATCGCAAGTCT+CGG | + | chr8.1:52588888-52588907 | MS.gene36048:CDS | 55.0% | |
| ! | ACCACCTAATTTGCGCCTCC+AGG | - | chr8.1:52588353-52588372 | None:intergenic | 55.0% |
| ! | CCACCTAATTTGCGCCTCCA+GGG | - | chr8.1:52588352-52588371 | None:intergenic | 55.0% |
| ! | GAACCCTGGAGGCGCAAATT+AGG | + | chr8.1:52588346-52588365 | MS.gene36048:intron | 55.0% |
| !! | AGACACTGGCTTGAGGCACA+GGG | - | chr8.1:52588961-52588980 | None:intergenic | 55.0% |
| !! | GTCGGCATGTTGGTGTTGGT+TGG | + | chr8.1:52587842-52587861 | MS.gene36048:intron | 55.0% |
| !! | GTTGGTGCCAGTGTTGTGTC+CGG | + | chr8.1:52587860-52587879 | MS.gene36048:intron | 55.0% |
| !! | TGGTGTCGGCATGTTGGTGT+TGG | + | chr8.1:52587838-52587857 | MS.gene36048:intron | 55.0% |
| ! | CAGGGGCATACCAGCCATGA+TGG | - | chr8.1:52588943-52588962 | None:intergenic | 60.0% |
| ! | CCCTGGAGGCGCAAATTAGG+TGG | + | chr8.1:52588349-52588368 | MS.gene36048:intron | 60.0% |
| !! | CAGACACTGGCTTGAGGCAC+AGG | - | chr8.1:52588962-52588981 | None:intergenic | 60.0% |
| !! | GACACTGGCTTGAGGCACAG+GGG | - | chr8.1:52588960-52588979 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 52587471 | 52588982 | 52587471 | ID=MS.gene36048 |
| chr8.1 | mRNA | 52587471 | 52588982 | 52587471 | ID=MS.gene36048.t1;Parent=MS.gene36048 |
| chr8.1 | exon | 52587471 | 52587761 | 52587471 | ID=MS.gene36048.t1.exon1;Parent=MS.gene36048.t1 |
| chr8.1 | CDS | 52587471 | 52587761 | 52587471 | ID=cds.MS.gene36048.t1;Parent=MS.gene36048.t1 |
| chr8.1 | exon | 52588752 | 52588982 | 52588752 | ID=MS.gene36048.t1.exon2;Parent=MS.gene36048.t1 |
| chr8.1 | CDS | 52588752 | 52588982 | 52588752 | ID=cds.MS.gene36048.t1;Parent=MS.gene36048.t1 |
| Gene Sequence |
| Protein sequence |
