Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062252.t1 | XP_013468748.1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 7.80E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062252.t1 | O65686 | 65.9 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 1.9e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062252.t1 | B3IWG1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 5.6e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene062252 | 0.828806 | 7.33E-55 | -1.69E-46 |
| MS.gene049346 | MS.gene062252 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene062252 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene049389 | MS.gene062252 | 0.845837 | 3.17E-59 | -1.69E-46 |
| MS.gene049427 | MS.gene062252 | 0.828128 | 1.07E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene062252 | 0.87439 | 7.01E-68 | -1.69E-46 |
| MS.gene049599 | MS.gene062252 | -0.818807 | 1.62E-52 | -1.69E-46 |
| MS.gene049614 | MS.gene062252 | 0.806862 | 6.69E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene062252 | 0.846842 | 1.68E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene062252 | 0.848897 | 4.57E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene062252 | 0.903003 | 5.43E-79 | -1.69E-46 |
| MS.gene049760 | MS.gene062252 | 0.836779 | 7.66E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene062252 | 0.821768 | 3.39E-53 | -1.69E-46 |
| MS.gene049915 | MS.gene062252 | 0.802644 | 5.09E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene062252 | 0.863384 | 2.59E-64 | -1.69E-46 |
| MS.gene050099 | MS.gene062252 | 0.841842 | 3.72E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene062252 | 0.853358 | 2.52E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene062252 | 0.908776 | 1.18E-81 | -1.69E-46 |
| MS.gene050397 | MS.gene062252 | 0.853113 | 2.96E-61 | -1.69E-46 |
| MS.gene050404 | MS.gene062252 | 0.844106 | 9.29E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene062252 | 0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene062252 | 0.861623 | 9.01E-64 | -1.69E-46 |
| MS.gene050464 | MS.gene062252 | 0.855439 | 6.30E-62 | -1.69E-46 |
| MS.gene050529 | MS.gene062252 | 0.872927 | 2.18E-67 | -1.69E-46 |
| MS.gene050558 | MS.gene062252 | 0.811273 | 7.60E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene062252 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene062252 | 0.840748 | 7.21E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene062252 | 0.842541 | 2.43E-58 | -1.69E-46 |
| MS.gene05101 | MS.gene062252 | 0.901579 | 2.32E-78 | -1.69E-46 |
| MS.gene05119 | MS.gene062252 | -0.818098 | 2.34E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene062252 | 0.900301 | 8.40E-78 | -1.69E-46 |
| MS.gene051582 | MS.gene062252 | 0.82083 | 5.58E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene062252 | 0.835674 | 1.46E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene062252 | 0.844109 | 9.26E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene062252 | 0.819527 | 1.11E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene062252 | 0.891286 | 4.56E-74 | -1.69E-46 |
| MS.gene052178 | MS.gene062252 | 0.878185 | 3.44E-69 | -1.69E-46 |
| MS.gene052188 | MS.gene062252 | 0.850951 | 1.22E-60 | -1.69E-46 |
| MS.gene052207 | MS.gene062252 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene062252 | 0.819037 | 1.43E-52 | -1.69E-46 |
| MS.gene052287 | MS.gene062252 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene062252 | 0.829702 | 4.44E-55 | -1.69E-46 |
| MS.gene052293 | MS.gene062252 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene062252 | 0.884674 | 1.57E-71 | -1.69E-46 |
| MS.gene052322 | MS.gene062252 | 0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene062252 | 0.868416 | 6.64E-66 | -1.69E-46 |
| MS.gene052340 | MS.gene062252 | 0.869863 | 2.25E-66 | -1.69E-46 |
| MS.gene052344 | MS.gene062252 | -0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene062252 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene053073 | MS.gene062252 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene062252 | 0.826095 | 3.27E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene062252 | 0.830587 | 2.70E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene062252 | 0.857057 | 2.12E-62 | -1.69E-46 |
| MS.gene053322 | MS.gene062252 | 0.822093 | 2.85E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene062252 | 0.864449 | 1.21E-64 | -1.69E-46 |
| MS.gene053559 | MS.gene062252 | 0.817162 | 3.80E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene062252 | 0.893944 | 3.92E-75 | -1.69E-46 |
| MS.gene053907 | MS.gene062252 | 0.820505 | 6.62E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene062252 | 0.844625 | 6.73E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene062252 | 0.86127 | 1.15E-63 | -1.69E-46 |
| MS.gene054473 | MS.gene062252 | 0.81749 | 3.21E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene062252 | 0.803584 | 3.25E-49 | -1.69E-46 |
| MS.gene05455 | MS.gene062252 | 0.844297 | 8.25E-59 | -1.69E-46 |
| MS.gene054802 | MS.gene062252 | 0.821076 | 4.89E-53 | -1.69E-46 |
| MS.gene054803 | MS.gene062252 | 0.821701 | 3.51E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene062252 | 0.823499 | 1.34E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene062252 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene062252 | 0.863706 | 2.06E-64 | -1.69E-46 |
| MS.gene055254 | MS.gene062252 | 0.832462 | 9.32E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene062252 | 0.886137 | 4.44E-72 | -1.69E-46 |
| MS.gene055390 | MS.gene062252 | 0.853388 | 2.47E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene062252 | 0.820283 | 7.44E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene062252 | 0.911966 | 3.34E-83 | -1.69E-46 |
| MS.gene055428 | MS.gene062252 | 0.882717 | 8.24E-71 | -1.69E-46 |
| MS.gene055499 | MS.gene062252 | 0.804396 | 2.20E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene062252 | 0.848884 | 4.61E-60 | -1.69E-46 |
| MS.gene055896 | MS.gene062252 | 0.844192 | 8.80E-59 | -1.69E-46 |
| MS.gene056191 | MS.gene062252 | 0.8372 | 5.98E-57 | -1.69E-46 |
| MS.gene056314 | MS.gene062252 | 0.807317 | 5.36E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene062252 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene056410 | MS.gene062252 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene056451 | MS.gene062252 | 0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene062252 | 0.852218 | 5.33E-61 | -1.69E-46 |
| MS.gene056612 | MS.gene062252 | 0.882945 | 6.80E-71 | -1.69E-46 |
| MS.gene057011 | MS.gene062252 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene062252 | 0.86811 | 8.33E-66 | -1.69E-46 |
| MS.gene057121 | MS.gene062252 | 0.839044 | 2.01E-57 | -1.69E-46 |
| MS.gene057123 | MS.gene062252 | 0.83739 | 5.35E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene062252 | 0.807012 | 6.22E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene062252 | 0.83378 | 4.38E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene062252 | 0.84757 | 1.06E-59 | -1.69E-46 |
| MS.gene05733 | MS.gene062252 | 0.846836 | 1.69E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene062252 | 0.853652 | 2.07E-61 | -1.69E-46 |
| MS.gene057448 | MS.gene062252 | 0.842797 | 2.08E-58 | -1.69E-46 |
| MS.gene057449 | MS.gene062252 | 0.841268 | 5.27E-58 | -1.69E-46 |
| MS.gene057450 | MS.gene062252 | 0.853514 | 2.27E-61 | -1.69E-46 |
| MS.gene057794 | MS.gene062252 | 0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene062252 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene062252 | 0.87886 | 1.99E-69 | -1.69E-46 |
| MS.gene058082 | MS.gene062252 | 0.844478 | 7.37E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene062252 | 0.864481 | 1.18E-64 | -1.69E-46 |
| MS.gene058142 | MS.gene062252 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene062252 | 0.83553 | 1.59E-56 | -1.69E-46 |
| MS.gene058276 | MS.gene062252 | 0.82299 | 1.76E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene062252 | 0.865379 | 6.16E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene062252 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene062252 | 0.893631 | 5.25E-75 | -1.69E-46 |
| MS.gene058787 | MS.gene062252 | 0.811353 | 7.30E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene062252 | 0.885032 | 1.15E-71 | -1.69E-46 |
| MS.gene058928 | MS.gene062252 | 0.818968 | 1.49E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene062252 | 0.864615 | 1.07E-64 | -1.69E-46 |
| MS.gene059228 | MS.gene062252 | 0.820872 | 5.45E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene062252 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene062252 | 0.880804 | 4.06E-70 | -1.69E-46 |
| MS.gene059342 | MS.gene062252 | 0.825081 | 5.69E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene062252 | 0.876147 | 1.76E-68 | -1.69E-46 |
| MS.gene059536 | MS.gene062252 | 0.831226 | 1.88E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene062252 | 0.893889 | 4.12E-75 | -1.69E-46 |
| MS.gene05959 | MS.gene062252 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene062252 | 0.860309 | 2.26E-63 | -1.69E-46 |
| MS.gene059688 | MS.gene062252 | 0.881159 | 3.03E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene062252 | 0.894405 | 2.54E-75 | -1.69E-46 |
| MS.gene059695 | MS.gene062252 | 0.893049 | 9.02E-75 | -1.69E-46 |
| MS.gene059708 | MS.gene062252 | 0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene062252 | 0.866917 | 2.01E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene062252 | 0.908673 | 1.32E-81 | -1.69E-46 |
| MS.gene059899 | MS.gene062252 | 0.844444 | 7.53E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene062252 | 0.831925 | 1.27E-55 | -1.69E-46 |
| MS.gene060005 | MS.gene062252 | 0.815537 | 8.79E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene062252 | 0.871804 | 5.17E-67 | -1.69E-46 |
| MS.gene060407 | MS.gene062252 | 0.81593 | 7.18E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene062252 | 0.834307 | 3.23E-56 | -1.69E-46 |
| MS.gene060495 | MS.gene062252 | 0.807991 | 3.86E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene062252 | 0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene062252 | 0.898771 | 3.83E-77 | -1.69E-46 |
| MS.gene061051 | MS.gene062252 | -0.867634 | 1.18E-65 | -1.69E-46 |
| MS.gene061112 | MS.gene062252 | 0.838282 | 3.16E-57 | -1.69E-46 |
| MS.gene061200 | MS.gene062252 | 0.805856 | 1.09E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene062252 | 0.835656 | 1.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062252.t1 | MTR_1g076310 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 1.06e-79 | 230 |
| MS.gene062252.t1 | MTR_2g039750 | 59.048 | 105 | 36 | 1 | 1 | 98 | 1 | 105 | 2.36e-39 | 128 |
| MS.gene062252.t1 | MTR_5g014070 | 58.095 | 105 | 37 | 1 | 1 | 98 | 1 | 105 | 3.80e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062252.t1 | AT4G34620 | 65.854 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 4.62e-38 | 124 |
| MS.gene062252.t1 | AT5G56940 | 53.846 | 104 | 41 | 1 | 1 | 97 | 1 | 104 | 5.68e-38 | 125 |
Find 23 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAACAACCCGATAAAA+TGG | 0.179817 | 1.1:+57172254 | None:intergenic |
| TGGATGGCTGCTCTTCGTTC+GGG | 0.277399 | 1.1:+57170520 | None:intergenic |
| TTGGATGGCTGCTCTTCGTT+CGG | 0.292007 | 1.1:+57170519 | None:intergenic |
| ACCATCAACTTCTTTGTCAT+TGG | 0.341893 | 1.1:+57170500 | None:intergenic |
| GGTTACTACAATCCTATTGC+AGG | 0.364917 | 1.1:-57172188 | MS.gene062252:intron |
| TCTTCGTTCGGGGTATCAAC+AGG | 0.369294 | 1.1:+57170531 | None:intergenic |
| ATTGATATTCAACCTGCAAT+AGG | 0.373630 | 1.1:+57172176 | None:intergenic |
| GGCAAGAACATTGAAGTTGT+TGG | 0.440064 | 1.1:-57172209 | MS.gene062252:CDS |
| TCCAATGACAAAGAAGTTGA+TGG | 0.440759 | 1.1:-57170501 | MS.gene062252:CDS |
| TTTAGGTATTGGCTTTCTGT+TGG | 0.451329 | 1.1:-57170639 | MS.gene062252:intron |
| AAACGGAAAGGTGGACTGTC+TGG | 0.470726 | 1.1:-57170561 | MS.gene062252:CDS |
| TCAACTTCTTTGTCATTGGA+TGG | 0.482393 | 1.1:+57170504 | None:intergenic |
| AGGCAGGTTTACAAATGAAA+CGG | 0.502953 | 1.1:-57170578 | MS.gene062252:CDS |
| AGTATTCGATTAGCGAGACT+TGG | 0.516156 | 1.1:-57172290 | MS.gene062252:CDS |
| TTACAACAACCCGATAAAAT+GGG | 0.516278 | 1.1:+57172255 | None:intergenic |
| AGACTCTCCACAGGTTCTGA+AGG | 0.549004 | 1.1:+57170609 | None:intergenic |
| GATAGCAAATGTGCAAGAGA+TGG | 0.580660 | 1.1:-57172230 | MS.gene062252:CDS |
| TGCTCAACCTTCAGAACCTG+TGG | 0.580737 | 1.1:-57170616 | MS.gene062252:CDS |
| TTGAATAAAAGACTCTCCAC+AGG | 0.595461 | 1.1:+57170600 | None:intergenic |
| GGATGGCTGCTCTTCGTTCG+GGG | 0.597237 | 1.1:+57170521 | None:intergenic |
| CTTCGTTCGGGGTATCAACA+GGG | 0.597733 | 1.1:+57170532 | None:intergenic |
| TTACAAATGAAACGGAAAGG+TGG | 0.647965 | 1.1:-57170570 | MS.gene062252:CDS |
| GGTTTACAAATGAAACGGAA+AGG | 0.664042 | 1.1:-57170573 | MS.gene062252:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTAAAAAAAATTAAA+TGG | + | chr1.1:57171427-57171446 | None:intergenic | 0.0% |
| !!! | TTTAATTTTTTTTAAAATTA+CGG | - | chr1.1:57171427-57171446 | MS.gene062252:intron | 0.0% |
| !! | AAAATTTCAGAAAATTATTA+TGG | + | chr1.1:57171334-57171353 | None:intergenic | 10.0% |
| !! | TTTATTGATATTGAATATAT+AGG | - | chr1.1:57171003-57171022 | MS.gene062252:intron | 10.0% |
| !!! | TATATGCAATATTTTATTTT+TGG | + | chr1.1:57171173-57171192 | None:intergenic | 10.0% |
| !! | AAAGTAAATCAAGTTAAAAA+AGG | + | chr1.1:57171953-57171972 | None:intergenic | 15.0% |
| !!! | AAAGAATTTTTCTTTCATTT+GGG | - | chr1.1:57170735-57170754 | MS.gene062252:intron | 15.0% |
| !! | AATCAAGTTAAAAAAGGATT+AGG | + | chr1.1:57171947-57171966 | None:intergenic | 20.0% |
| !! | ATGATTTACAATTACATACA+TGG | - | chr1.1:57171461-57171480 | MS.gene062252:intron | 20.0% |
| !! | CAAATGAAAGAAAAATTCTT+TGG | + | chr1.1:57170736-57170755 | None:intergenic | 20.0% |
| !! | TATGAATATTGCATATAGAA+GGG | - | chr1.1:57171141-57171160 | MS.gene062252:intron | 20.0% |
| !! | TGTTTATAAATGATAAAACC+AGG | + | chr1.1:57171754-57171773 | None:intergenic | 20.0% |
| !! | TTATGAATATTGCATATAGA+AGG | - | chr1.1:57171140-57171159 | MS.gene062252:intron | 20.0% |
| !!! | AAGAATTTTTCTTTCATTTG+GGG | - | chr1.1:57170736-57170755 | MS.gene062252:intron | 20.0% |
| !!! | AGTTATTTGTACACAATTTT+GGG | - | chr1.1:57172058-57172077 | MS.gene062252:intron | 20.0% |
| !!! | CAAAGAATTTTTCTTTCATT+TGG | - | chr1.1:57170734-57170753 | MS.gene062252:intron | 20.0% |
| !!! | CATTTTTAATCCTTTTACTA+TGG | + | chr1.1:57171834-57171853 | None:intergenic | 20.0% |
| !!! | GGTTTTATCATTTATAAACA+CGG | - | chr1.1:57171754-57171773 | MS.gene062252:intron | 20.0% |
| !!! | GTTCAAATAACATTACTTTT+CGG | - | chr1.1:57170936-57170955 | MS.gene062252:intron | 20.0% |
| !!! | TAGTTATTTGTACACAATTT+TGG | - | chr1.1:57172057-57172076 | MS.gene062252:intron | 20.0% |
| !!! | TTAAAGCACAAAATTGTTTT+GGG | - | chr1.1:57170782-57170801 | MS.gene062252:CDS | 20.0% |
| !!! | TTCAAATAACATTACTTTTC+GGG | - | chr1.1:57170937-57170956 | MS.gene062252:intron | 20.0% |
| ! | AACACATAGAATTACAGATA+AGG | + | chr1.1:57170632-57170651 | None:intergenic | 25.0% |
| ! | AACGAACTGATGTATTTAAA+CGG | - | chr1.1:57171618-57171637 | MS.gene062252:intron | 25.0% |
| ! | AGCATACAATAATGTTCTAA+AGG | + | chr1.1:57171286-57171305 | None:intergenic | 25.0% |
| ! | GAAAATTATTATGGCAAGTA+AGG | + | chr1.1:57171325-57171344 | None:intergenic | 25.0% |
| ! | GAGATAAAGATAAACGTATA+TGG | - | chr1.1:57170896-57170915 | MS.gene062252:intron | 25.0% |
| ! | TTACAATTACATACATGGTA+TGG | - | chr1.1:57171466-57171485 | MS.gene062252:intron | 25.0% |
| ! | TTATCATTTATAAACACGGA+GGG | - | chr1.1:57171758-57171777 | MS.gene062252:intron | 25.0% |
| ! | TTGTTAATATCTCTTGTTAG+TGG | - | chr1.1:57171256-57171275 | MS.gene062252:intron | 25.0% |
| ! | TTTATCATTTATAAACACGG+AGG | - | chr1.1:57171757-57171776 | MS.gene062252:intron | 25.0% |
| !! | ATATATAGGACTTGTTTGAA+AGG | - | chr1.1:57171017-57171036 | MS.gene062252:intron | 25.0% |
| !! | ATCCTTTTACTATGGAATTA+TGG | + | chr1.1:57171826-57171845 | None:intergenic | 25.0% |
| !! | CTTAAAGCACAAAATTGTTT+TGG | - | chr1.1:57170781-57170800 | MS.gene062252:CDS | 25.0% |
| !! | GTTATTTGTACACAATTTTG+GGG | - | chr1.1:57172059-57172078 | MS.gene062252:intron | 25.0% |
| !! | TTCTACTTTGTAAAGTATCA+TGG | - | chr1.1:57171671-57171690 | MS.gene062252:intron | 25.0% |
| AAATGACCATAATGAAACAC+AGG | - | chr1.1:57171217-57171236 | MS.gene062252:intron | 30.0% | |
| AATTGCAATGTATACCAGTT+TGG | - | chr1.1:57171888-57171907 | MS.gene062252:intron | 30.0% | |
| ATTAAATGGCAGATTGACAT+AGG | + | chr1.1:57171413-57171432 | None:intergenic | 30.0% | |
| ATTGATATTCAACCTGCAAT+AGG | + | chr1.1:57170602-57170621 | None:intergenic | 30.0% | |
| ATTGCAATGTATACCAGTTT+GGG | - | chr1.1:57171889-57171908 | MS.gene062252:intron | 30.0% | |
| CTTATCTGTTTGCATCTTAA+TGG | - | chr1.1:57171544-57171563 | MS.gene062252:intron | 30.0% | |
| GCAATTCACAGTAACAAATA+GGG | + | chr1.1:57171874-57171893 | None:intergenic | 30.0% | |
| GGAAATTAGTGATAATTGTG+GGG | - | chr1.1:57172080-57172099 | MS.gene062252:intron | 30.0% | |
| GGGAAATTAGTGATAATTGT+GGG | - | chr1.1:57172079-57172098 | MS.gene062252:intron | 30.0% | |
| TCAACTTGAAATGAAAACAC+CGG | + | chr1.1:57171375-57171394 | None:intergenic | 30.0% | |
| TGCAATTCACAGTAACAAAT+AGG | + | chr1.1:57171875-57171894 | None:intergenic | 30.0% | |
| TTACAACAACCCGATAAAAT+GGG | + | chr1.1:57170523-57170542 | None:intergenic | 30.0% | |
| TTGTATGCTTGATTTCACTT+TGG | - | chr1.1:57171297-57171316 | MS.gene062252:intron | 30.0% | |
| ! | GAATTTTCTGTGTTTACGAT+AGG | - | chr1.1:57171488-57171507 | MS.gene062252:intron | 30.0% |
| ! | TTCATTTGGGGTATACTTTA+TGG | - | chr1.1:57170748-57170767 | MS.gene062252:intron | 30.0% |
| !!! | TTTTTTGTTCCTAGCTCTAA+GGG | + | chr1.1:57171115-57171134 | None:intergenic | 30.0% |
| AAACACCGGAAAAACTTACA+CGG | + | chr1.1:57171361-57171380 | None:intergenic | 35.0% | |
| ACCATAATGAAACACAGGTT+TGG | - | chr1.1:57171222-57171241 | MS.gene062252:intron | 35.0% | |
| ACCATCAACTTCTTTGTCAT+TGG | + | chr1.1:57172278-57172297 | None:intergenic | 35.0% | |
| AGGCAGGTTTACAAATGAAA+CGG | - | chr1.1:57172197-57172216 | MS.gene062252:CDS | 35.0% | |
| CAAATATAGTGTACTCCGTT+TGG | - | chr1.1:57170842-57170861 | MS.gene062252:intron | 35.0% | |
| CAATACCTAAAGAACATGAG+GGG | + | chr1.1:57172127-57172146 | None:intergenic | 35.0% | |
| CCAATACCTAAAGAACATGA+GGG | + | chr1.1:57172128-57172147 | None:intergenic | 35.0% | |
| CTGATTTCTGTTCTCAGTAT+GGG | - | chr1.1:57171520-57171539 | MS.gene062252:intron | 35.0% | |
| GGCCATAATTCCATAGTAAA+AGG | - | chr1.1:57171821-57171840 | MS.gene062252:intron | 35.0% | |
| GGGGAAATTAGTGATAATTG+TGG | - | chr1.1:57172078-57172097 | MS.gene062252:intron | 35.0% | |
| GGTTTACAAATGAAACGGAA+AGG | - | chr1.1:57172202-57172221 | MS.gene062252:CDS | 35.0% | |
| GTGAATGTCTAAGAGAGTTT+GGG | - | chr1.1:57171056-57171075 | MS.gene062252:intron | 35.0% | |
| GTTACAACAACCCGATAAAA+TGG | + | chr1.1:57170524-57170543 | None:intergenic | 35.0% | |
| TAATCAATGACCCAAACTGT+TGG | - | chr1.1:57171800-57171819 | MS.gene062252:intron | 35.0% | |
| TATCTTCTGCAACATCCAAA+CGG | + | chr1.1:57170860-57170879 | None:intergenic | 35.0% | |
| TCAACTTCTTTGTCATTGGA+TGG | + | chr1.1:57172274-57172293 | None:intergenic | 35.0% | |
| TCCAAACCTGTGTTTCATTA+TGG | + | chr1.1:57171226-57171245 | None:intergenic | 35.0% | |
| TCCAATGACAAAGAAGTTGA+TGG | - | chr1.1:57172274-57172293 | MS.gene062252:CDS | 35.0% | |
| TGTGAATGTCTAAGAGAGTT+TGG | - | chr1.1:57171055-57171074 | MS.gene062252:intron | 35.0% | |
| TTACAAATGAAACGGAAAGG+TGG | - | chr1.1:57172205-57172224 | MS.gene062252:CDS | 35.0% | |
| TTGAATAAAAGACTCTCCAC+AGG | + | chr1.1:57172178-57172197 | None:intergenic | 35.0% | |
| ! | ATTTGGGGTATACTTTATGG+TGG | - | chr1.1:57170751-57170770 | MS.gene062252:intron | 35.0% |
| ! | TGTGGAGAGTCTTTTATTCA+AGG | - | chr1.1:57172177-57172196 | MS.gene062252:intron | 35.0% |
| ! | TTGTTCCGTGTAAGTTTTTC+CGG | - | chr1.1:57171353-57171372 | MS.gene062252:intron | 35.0% |
| !! | CTTTTTCGCTAATGAGTAGT+GGG | - | chr1.1:57170980-57170999 | MS.gene062252:intron | 35.0% |
| !! | TTTAGGTATTGGCTTTCTGT+TGG | - | chr1.1:57172136-57172155 | MS.gene062252:intron | 35.0% |
| !!! | GGGAGAAACACGTTTTTTTA+TGG | - | chr1.1:57170957-57170976 | MS.gene062252:intron | 35.0% |
| !!! | GTTTTTTGTTCCTAGCTCTA+AGG | + | chr1.1:57171116-57171135 | None:intergenic | 35.0% |
| AGTATTCGATTAGCGAGACT+TGG | - | chr1.1:57170485-57170504 | MS.gene062252:CDS | 40.0% | |
| CCATACTGAGAACAGAAATC+AGG | + | chr1.1:57171522-57171541 | None:intergenic | 40.0% | |
| CCCTCATGTTCTTTAGGTAT+TGG | - | chr1.1:57172125-57172144 | MS.gene062252:intron | 40.0% | |
| CCTGATTTCTGTTCTCAGTA+TGG | - | chr1.1:57171519-57171538 | MS.gene062252:intron | 40.0% | |
| CTAGAAAGTGACCTGATAGA+GGG | - | chr1.1:57171727-57171746 | MS.gene062252:intron | 40.0% | |
| GATAGCAAATGTGCAAGAGA+TGG | - | chr1.1:57170545-57170564 | MS.gene062252:CDS | 40.0% | |
| GCCAATACCTAAAGAACATG+AGG | + | chr1.1:57172129-57172148 | None:intergenic | 40.0% | |
| GGAATTATGGCCAACAGTTT+GGG | + | chr1.1:57171813-57171832 | None:intergenic | 40.0% | |
| GGCAAGAACATTGAAGTTGT+TGG | - | chr1.1:57170566-57170585 | MS.gene062252:CDS | 40.0% | |
| GGCAGATTGACATAGGTTAT+AGG | + | chr1.1:57171406-57171425 | None:intergenic | 40.0% | |
| GGTTACTACAATCCTATTGC+AGG | - | chr1.1:57170587-57170606 | MS.gene062252:CDS | 40.0% | |
| GTGATAATTGTGGGGATCAT+TGG | - | chr1.1:57172088-57172107 | MS.gene062252:intron | 40.0% | |
| TAGAAAGTGACCTGATAGAG+GGG | - | chr1.1:57171728-57171747 | MS.gene062252:intron | 40.0% | |
| TGGAATTATGGCCAACAGTT+TGG | + | chr1.1:57171814-57171833 | None:intergenic | 40.0% | |
| TTTAGCTATCCCTTAGAGCT+AGG | - | chr1.1:57171103-57171122 | MS.gene062252:intron | 40.0% | |
| ! | CACACACAACCCATTTTATC+GGG | - | chr1.1:57170511-57170530 | MS.gene062252:CDS | 40.0% |
| ! | GAGAGTCTTTTATTCAAGGC+AGG | - | chr1.1:57172181-57172200 | MS.gene062252:intron | 40.0% |
| ! | GCACACACAACCCATTTTAT+CGG | - | chr1.1:57170510-57170529 | MS.gene062252:CDS | 40.0% |
| ! | TATACCAGTTTGGGATGAGA+AGG | - | chr1.1:57171898-57171917 | MS.gene062252:intron | 40.0% |
| !! | AAACGGATTGAAGTCACTTG+AGG | - | chr1.1:57171635-57171654 | MS.gene062252:intron | 40.0% |
| !!! | GCTTTTTCGCTAATGAGTAG+TGG | - | chr1.1:57170979-57170998 | MS.gene062252:intron | 40.0% |
| AACATGAGGGGAGGTTAAGA+TGG | + | chr1.1:57172115-57172134 | None:intergenic | 45.0% | |
| AACCTCCCCTCATGTTCTTT+AGG | - | chr1.1:57172119-57172138 | MS.gene062252:intron | 45.0% | |
| GCTAGAAAGTGACCTGATAG+AGG | - | chr1.1:57171726-57171745 | MS.gene062252:intron | 45.0% | |
| TACCTAAAGAACATGAGGGG+AGG | + | chr1.1:57172124-57172143 | None:intergenic | 45.0% | |
| TAAAACCAGGCCCCTCTATC+AGG | + | chr1.1:57171741-57171760 | None:intergenic | 50.0% | |
| TGCTCAACCTTCAGAACCTG+TGG | - | chr1.1:57172159-57172178 | MS.gene062252:intron | 50.0% | |
| TTGGATGGCTGCTCTTCGTT+CGG | + | chr1.1:57172259-57172278 | None:intergenic | 50.0% | |
| ! | ACCAGTTTGGGATGAGAAGG+AGG | - | chr1.1:57171901-57171920 | MS.gene062252:intron | 50.0% |
| ! | AGACTCTCCACAGGTTCTGA+AGG | + | chr1.1:57172169-57172188 | None:intergenic | 50.0% |
| ! | CCAGTTTGGGATGAGAAGGA+GGG | - | chr1.1:57171902-57171921 | MS.gene062252:intron | 50.0% |
| ! | CTTCGTTCGGGGTATCAACA+GGG | + | chr1.1:57172246-57172265 | None:intergenic | 50.0% |
| ! | TCTTCGTTCGGGGTATCAAC+AGG | + | chr1.1:57172247-57172266 | None:intergenic | 50.0% |
| !! | AAACGGAAAGGTGGACTGTC+TGG | - | chr1.1:57172214-57172233 | MS.gene062252:CDS | 50.0% |
| CCCTCCTTCTCATCCCAAAC+TGG | + | chr1.1:57171905-57171924 | None:intergenic | 55.0% | |
| TGGATGGCTGCTCTTCGTTC+GGG | + | chr1.1:57172258-57172277 | None:intergenic | 55.0% | |
| AGTGACCTGATAGAGGGGCC+TGG | - | chr1.1:57171733-57171752 | MS.gene062252:intron | 60.0% | |
| GGATGGCTGCTCTTCGTTCG+GGG | + | chr1.1:57172257-57172276 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57170476 | 57172321 | 57170476 | ID=MS.gene062252 |
| chr1.1 | mRNA | 57170476 | 57172321 | 57170476 | ID=MS.gene062252.t1;Parent=MS.gene062252 |
| chr1.1 | exon | 57172189 | 57172321 | 57172189 | ID=MS.gene062252.t1.exon1;Parent=MS.gene062252.t1 |
| chr1.1 | CDS | 57172189 | 57172321 | 57172189 | ID=cds.MS.gene062252.t1;Parent=MS.gene062252.t1 |
| chr1.1 | exon | 57170772 | 57170817 | 57170772 | ID=MS.gene062252.t1.exon2;Parent=MS.gene062252.t1 |
| chr1.1 | CDS | 57170772 | 57170817 | 57170772 | ID=cds.MS.gene062252.t1;Parent=MS.gene062252.t1 |
| chr1.1 | exon | 57170476 | 57170656 | 57170476 | ID=MS.gene062252.t1.exon3;Parent=MS.gene062252.t1 |
| chr1.1 | CDS | 57170476 | 57170656 | 57170476 | ID=cds.MS.gene062252.t1;Parent=MS.gene062252.t1 |
| Gene Sequence |
| Protein sequence |
