Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62419.t1 | XP_003609300.1 | 97 | 133 | 4 | 0 | 1 | 133 | 1 | 133 | 9.30E-67 | 262.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62419.t1 | Q9SN73 | 51.7 | 87 | 41 | 1 | 47 | 133 | 51 | 136 | 2.3e-18 | 93.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62419.t1 | G7JCY8 | 97.0 | 133 | 4 | 0 | 1 | 133 | 1 | 133 | 6.7e-67 | 262.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene62419 | 0.812836 | 3.47E-51 | -1.69E-46 |
MS.gene049153 | MS.gene62419 | 0.813582 | 2.38E-51 | -1.69E-46 |
MS.gene049260 | MS.gene62419 | 0.824768 | 6.75E-54 | -1.69E-46 |
MS.gene049284 | MS.gene62419 | 0.853472 | 2.34E-61 | -1.69E-46 |
MS.gene049297 | MS.gene62419 | 0.809631 | 1.72E-50 | -1.69E-46 |
MS.gene049346 | MS.gene62419 | 0.859751 | 3.33E-63 | -1.69E-46 |
MS.gene049351 | MS.gene62419 | 0.854283 | 1.36E-61 | -1.69E-46 |
MS.gene049389 | MS.gene62419 | 0.836375 | 9.71E-57 | -1.69E-46 |
MS.gene049427 | MS.gene62419 | 0.809801 | 1.58E-50 | -1.69E-46 |
MS.gene049491 | MS.gene62419 | 0.858383 | 8.55E-63 | -1.69E-46 |
MS.gene049599 | MS.gene62419 | -0.836955 | 6.91E-57 | -1.69E-46 |
MS.gene049661 | MS.gene62419 | 0.858037 | 1.08E-62 | -1.69E-46 |
MS.gene049662 | MS.gene62419 | 0.862129 | 6.31E-64 | -1.69E-46 |
MS.gene049758 | MS.gene62419 | 0.923187 | 3.69E-89 | -1.69E-46 |
MS.gene049910 | MS.gene62419 | 0.85904 | 5.45E-63 | -1.69E-46 |
MS.gene049915 | MS.gene62419 | 0.835285 | 1.83E-56 | -1.69E-46 |
MS.gene050076 | MS.gene62419 | 0.859004 | 5.58E-63 | -1.69E-46 |
MS.gene050099 | MS.gene62419 | 0.870806 | 1.10E-66 | -1.69E-46 |
MS.gene050128 | MS.gene62419 | 0.859482 | 4.01E-63 | -1.69E-46 |
MS.gene050301 | MS.gene62419 | 0.921854 | 2.09E-88 | -1.69E-46 |
MS.gene050319 | MS.gene62419 | -0.812697 | 3.72E-51 | -1.69E-46 |
MS.gene050330 | MS.gene62419 | -0.824674 | 7.10E-54 | -1.69E-46 |
MS.gene050397 | MS.gene62419 | 0.906995 | 8.17E-81 | -1.69E-46 |
MS.gene050404 | MS.gene62419 | 0.875601 | 2.71E-68 | -1.69E-46 |
MS.gene050406 | MS.gene62419 | 0.893279 | 7.29E-75 | -1.69E-46 |
MS.gene050426 | MS.gene62419 | -0.838948 | 2.12E-57 | -1.69E-46 |
MS.gene050432 | MS.gene62419 | 0.848342 | 6.52E-60 | -1.69E-46 |
MS.gene050464 | MS.gene62419 | 0.9144 | 2.00E-84 | -1.69E-46 |
MS.gene050529 | MS.gene62419 | 0.922113 | 1.50E-88 | -1.69E-46 |
MS.gene050558 | MS.gene62419 | 0.845594 | 3.68E-59 | -1.69E-46 |
MS.gene050623 | MS.gene62419 | -0.805118 | 1.56E-49 | -1.69E-46 |
MS.gene050642 | MS.gene62419 | 0.850207 | 1.97E-60 | -1.69E-46 |
MS.gene050650 | MS.gene62419 | 0.810662 | 1.03E-50 | -1.69E-46 |
MS.gene050670 | MS.gene62419 | 0.871535 | 6.35E-67 | -1.69E-46 |
MS.gene050767 | MS.gene62419 | 0.810347 | 1.21E-50 | -1.69E-46 |
MS.gene050770 | MS.gene62419 | 0.814622 | 1.40E-51 | -1.69E-46 |
MS.gene050812 | MS.gene62419 | 0.822937 | 1.81E-53 | -1.69E-46 |
MS.gene050971 | MS.gene62419 | 0.809064 | 2.28E-50 | -1.69E-46 |
MS.gene05101 | MS.gene62419 | 0.909447 | 5.64E-82 | -1.69E-46 |
MS.gene05105 | MS.gene62419 | 0.842251 | 2.90E-58 | -1.69E-46 |
MS.gene05119 | MS.gene62419 | -0.840321 | 9.33E-58 | -1.69E-46 |
MS.gene051240 | MS.gene62419 | 0.815844 | 7.51E-52 | -1.69E-46 |
MS.gene051242 | MS.gene62419 | 0.803611 | 3.21E-49 | -1.69E-46 |
MS.gene051471 | MS.gene62419 | 0.903194 | 4.46E-79 | -1.69E-46 |
MS.gene051525 | MS.gene62419 | 0.821284 | 4.38E-53 | -1.69E-46 |
MS.gene051582 | MS.gene62419 | 0.858708 | 6.84E-63 | -1.69E-46 |
MS.gene051662 | MS.gene62419 | 0.849633 | 2.85E-60 | -1.69E-46 |
MS.gene051663 | MS.gene62419 | 0.868894 | 4.65E-66 | -1.69E-46 |
MS.gene051860 | MS.gene62419 | 0.865008 | 8.06E-65 | -1.69E-46 |
MS.gene051877 | MS.gene62419 | 0.812358 | 4.41E-51 | -1.69E-46 |
MS.gene051983 | MS.gene62419 | 0.854972 | 8.62E-62 | -1.69E-46 |
MS.gene052011 | MS.gene62419 | -0.834883 | 2.32E-56 | -1.69E-46 |
MS.gene052077 | MS.gene62419 | 0.88308 | 6.07E-71 | -1.69E-46 |
MS.gene052078 | MS.gene62419 | 0.91134 | 6.79E-83 | -1.69E-46 |
MS.gene052178 | MS.gene62419 | 0.89904 | 2.94E-77 | -1.69E-46 |
MS.gene052188 | MS.gene62419 | 0.893889 | 4.12E-75 | -1.69E-46 |
MS.gene052207 | MS.gene62419 | 0.826404 | 2.76E-54 | -1.69E-46 |
MS.gene052253 | MS.gene62419 | 0.882346 | 1.12E-70 | -1.69E-46 |
MS.gene052255 | MS.gene62419 | 0.812429 | 4.26E-51 | -1.69E-46 |
MS.gene052310 | MS.gene62419 | 0.906539 | 1.33E-80 | -1.69E-46 |
MS.gene052322 | MS.gene62419 | 0.8333 | 5.77E-56 | -1.69E-46 |
MS.gene052326 | MS.gene62419 | 0.862564 | 4.63E-64 | -1.69E-46 |
MS.gene052340 | MS.gene62419 | 0.907201 | 6.54E-81 | -1.69E-46 |
MS.gene052344 | MS.gene62419 | -0.807595 | 4.68E-50 | -1.69E-46 |
MS.gene052481 | MS.gene62419 | 0.827427 | 1.57E-54 | -1.69E-46 |
MS.gene052485 | MS.gene62419 | 0.840812 | 6.94E-58 | -1.69E-46 |
MS.gene052600 | MS.gene62419 | 0.814109 | 1.82E-51 | -1.69E-46 |
MS.gene052917 | MS.gene62419 | -0.808944 | 2.41E-50 | -1.69E-46 |
MS.gene053073 | MS.gene62419 | 0.813989 | 1.94E-51 | -1.69E-46 |
MS.gene053103 | MS.gene62419 | 0.826996 | 2.00E-54 | -1.69E-46 |
MS.gene05316 | MS.gene62419 | 0.830687 | 2.55E-55 | -1.69E-46 |
MS.gene053181 | MS.gene62419 | 0.816174 | 6.33E-52 | -1.69E-46 |
MS.gene053209 | MS.gene62419 | 0.880158 | 6.91E-70 | -1.69E-46 |
MS.gene053322 | MS.gene62419 | 0.812348 | 4.43E-51 | -1.69E-46 |
MS.gene053557 | MS.gene62419 | 0.89836 | 5.73E-77 | -1.69E-46 |
MS.gene053559 | MS.gene62419 | 0.803711 | 3.06E-49 | -1.69E-46 |
MS.gene053836 | MS.gene62419 | 0.926366 | 5.17E-91 | -1.69E-46 |
MS.gene053907 | MS.gene62419 | 0.866592 | 2.55E-65 | -1.69E-46 |
MS.gene053928 | MS.gene62419 | 0.851353 | 9.38E-61 | -1.69E-46 |
MS.gene053971 | MS.gene62419 | 0.859102 | 5.22E-63 | -1.69E-46 |
MS.gene054010 | MS.gene62419 | 0.820629 | 6.20E-53 | -1.69E-46 |
MS.gene054011 | MS.gene62419 | 0.845348 | 4.30E-59 | -1.69E-46 |
MS.gene054012 | MS.gene62419 | 0.832729 | 8.01E-56 | -1.69E-46 |
MS.gene054013 | MS.gene62419 | 0.830989 | 2.15E-55 | -1.69E-46 |
MS.gene054123 | MS.gene62419 | 0.851798 | 7.02E-61 | -1.69E-46 |
MS.gene054183 | MS.gene62419 | 0.820479 | 6.71E-53 | -1.69E-46 |
MS.gene054185 | MS.gene62419 | 0.800086 | 1.70E-48 | -1.69E-46 |
MS.gene054214 | MS.gene62419 | 0.81301 | 3.18E-51 | -1.69E-46 |
MS.gene054349 | MS.gene62419 | 0.846674 | 1.87E-59 | -1.69E-46 |
MS.gene054376 | MS.gene62419 | 0.841648 | 4.18E-58 | -1.69E-46 |
MS.gene054473 | MS.gene62419 | 0.845708 | 3.43E-59 | -1.69E-46 |
MS.gene054542 | MS.gene62419 | 0.81244 | 4.24E-51 | -1.69E-46 |
MS.gene05455 | MS.gene62419 | 0.840224 | 9.89E-58 | -1.69E-46 |
MS.gene054618 | MS.gene62419 | 0.801488 | 8.79E-49 | -1.69E-46 |
MS.gene054667 | MS.gene62419 | 0.811401 | 7.13E-51 | -1.69E-46 |
MS.gene054802 | MS.gene62419 | 0.809492 | 1.84E-50 | -1.69E-46 |
MS.gene054803 | MS.gene62419 | 0.808902 | 2.46E-50 | -1.69E-46 |
MS.gene054804 | MS.gene62419 | 0.811968 | 5.37E-51 | -1.69E-46 |
MS.gene054918 | MS.gene62419 | 0.802975 | 4.35E-49 | -1.69E-46 |
MS.gene054930 | MS.gene62419 | 0.842778 | 2.10E-58 | -1.69E-46 |
MS.gene054942 | MS.gene62419 | 0.812637 | 3.84E-51 | -1.69E-46 |
MS.gene054955 | MS.gene62419 | 0.831636 | 1.49E-55 | -1.69E-46 |
MS.gene054983 | MS.gene62419 | 0.868052 | 8.69E-66 | -1.69E-46 |
MS.gene055116 | MS.gene62419 | 0.905181 | 5.63E-80 | -1.69E-46 |
MS.gene055254 | MS.gene62419 | 0.803789 | 2.95E-49 | -1.69E-46 |
MS.gene055277 | MS.gene62419 | 0.912331 | 2.20E-83 | -1.69E-46 |
MS.gene055390 | MS.gene62419 | 0.871962 | 4.58E-67 | -1.69E-46 |
MS.gene055422 | MS.gene62419 | 0.918109 | 2.34E-86 | -1.69E-46 |
MS.gene055428 | MS.gene62419 | 0.911037 | 9.56E-83 | -1.69E-46 |
MS.gene055533 | MS.gene62419 | 0.817735 | 2.83E-52 | -1.69E-46 |
MS.gene05553 | MS.gene62419 | 0.859273 | 4.64E-63 | -1.69E-46 |
MS.gene055604 | MS.gene62419 | 0.857831 | 1.25E-62 | -1.69E-46 |
MS.gene055712 | MS.gene62419 | 0.866664 | 2.42E-65 | -1.69E-46 |
MS.gene055859 | MS.gene62419 | 0.82214 | 2.78E-53 | -1.69E-46 |
MS.gene055896 | MS.gene62419 | 0.81436 | 1.60E-51 | -1.69E-46 |
MS.gene056191 | MS.gene62419 | 0.875835 | 2.25E-68 | -1.69E-46 |
MS.gene056314 | MS.gene62419 | 0.831417 | 1.69E-55 | -1.69E-46 |
MS.gene056407 | MS.gene62419 | 0.876233 | 1.64E-68 | -1.69E-46 |
MS.gene056410 | MS.gene62419 | 0.833341 | 5.64E-56 | -1.69E-46 |
MS.gene056451 | MS.gene62419 | 0.846703 | 1.84E-59 | -1.69E-46 |
MS.gene056609 | MS.gene62419 | 0.853375 | 2.49E-61 | -1.69E-46 |
MS.gene056612 | MS.gene62419 | 0.921168 | 5.06E-88 | -1.69E-46 |
MS.gene056659 | MS.gene62419 | 0.848412 | 6.23E-60 | -1.69E-46 |
MS.gene056723 | MS.gene62419 | 0.823288 | 1.50E-53 | -1.69E-46 |
MS.gene056772 | MS.gene62419 | 0.809254 | 2.07E-50 | -1.69E-46 |
MS.gene056796 | MS.gene62419 | 0.859098 | 5.23E-63 | -1.69E-46 |
MS.gene056899 | MS.gene62419 | -0.849234 | 3.69E-60 | -1.69E-46 |
MS.gene056902 | MS.gene62419 | 0.818024 | 2.43E-52 | -1.69E-46 |
MS.gene056979 | MS.gene62419 | 0.848888 | 4.60E-60 | -1.69E-46 |
MS.gene057011 | MS.gene62419 | 0.808801 | 2.59E-50 | -1.69E-46 |
MS.gene05702 | MS.gene62419 | 0.910662 | 1.46E-82 | -1.69E-46 |
MS.gene057121 | MS.gene62419 | 0.891703 | 3.12E-74 | -1.69E-46 |
MS.gene057123 | MS.gene62419 | 0.828007 | 1.14E-54 | -1.69E-46 |
MS.gene057124 | MS.gene62419 | 0.823208 | 1.57E-53 | -1.69E-46 |
MS.gene057245 | MS.gene62419 | 0.861836 | 7.75E-64 | -1.69E-46 |
MS.gene057295 | MS.gene62419 | 0.841256 | 5.31E-58 | -1.69E-46 |
MS.gene05733 | MS.gene62419 | 0.855889 | 4.66E-62 | -1.69E-46 |
MS.gene057396 | MS.gene62419 | 0.82768 | 1.37E-54 | -1.69E-46 |
MS.gene057439 | MS.gene62419 | 0.884969 | 1.22E-71 | -1.69E-46 |
MS.gene057448 | MS.gene62419 | 0.853954 | 1.70E-61 | -1.69E-46 |
MS.gene057449 | MS.gene62419 | 0.841823 | 3.76E-58 | -1.69E-46 |
MS.gene057450 | MS.gene62419 | 0.856809 | 2.50E-62 | -1.69E-46 |
MS.gene057469 | MS.gene62419 | 0.811836 | 5.74E-51 | -1.69E-46 |
MS.gene057749 | MS.gene62419 | 0.836665 | 8.19E-57 | -1.69E-46 |
MS.gene057754 | MS.gene62419 | 0.818515 | 1.88E-52 | -1.69E-46 |
MS.gene057779 | MS.gene62419 | 0.814673 | 1.37E-51 | -1.69E-46 |
MS.gene057796 | MS.gene62419 | 0.832971 | 6.97E-56 | -1.69E-46 |
MS.gene057823 | MS.gene62419 | 0.823354 | 1.45E-53 | -1.69E-46 |
MS.gene058002 | MS.gene62419 | 0.91133 | 6.87E-83 | -1.69E-46 |
MS.gene058082 | MS.gene62419 | 0.865188 | 7.08E-65 | -1.69E-46 |
MS.gene05811 | MS.gene62419 | 0.912781 | 1.31E-83 | -1.69E-46 |
MS.gene058142 | MS.gene62419 | 0.876148 | 1.76E-68 | -1.69E-46 |
MS.gene058233 | MS.gene62419 | 0.890093 | 1.35E-73 | -1.69E-46 |
MS.gene058276 | MS.gene62419 | 0.880677 | 4.51E-70 | -1.69E-46 |
MS.gene058293 | MS.gene62419 | 0.87743 | 6.33E-69 | -1.69E-46 |
MS.gene058365 | MS.gene62419 | 0.844359 | 7.94E-59 | -1.69E-46 |
MS.gene058660 | MS.gene62419 | 0.900146 | 9.80E-78 | -1.69E-46 |
MS.gene058710 | MS.gene62419 | 0.832611 | 8.56E-56 | -1.69E-46 |
MS.gene058746 | MS.gene62419 | 0.805847 | 1.10E-49 | -1.69E-46 |
MS.gene058749 | MS.gene62419 | 0.860128 | 2.56E-63 | -1.69E-46 |
MS.gene058787 | MS.gene62419 | 0.855439 | 6.30E-62 | -1.69E-46 |
MS.gene058845 | MS.gene62419 | 0.900298 | 8.42E-78 | -1.69E-46 |
MS.gene05886 | MS.gene62419 | 0.84515 | 4.86E-59 | -1.69E-46 |
MS.gene058928 | MS.gene62419 | 0.844167 | 8.94E-59 | -1.69E-46 |
MS.gene059011 | MS.gene62419 | 0.800028 | 1.75E-48 | -1.69E-46 |
MS.gene059033 | MS.gene62419 | -0.807023 | 6.19E-50 | -1.69E-46 |
MS.gene05907 | MS.gene62419 | 0.917201 | 7.08E-86 | -1.69E-46 |
MS.gene059141 | MS.gene62419 | 0.810469 | 1.13E-50 | -1.69E-46 |
MS.gene059228 | MS.gene62419 | 0.817011 | 4.11E-52 | -1.69E-46 |
MS.gene059285 | MS.gene62419 | 0.857492 | 1.57E-62 | -1.69E-46 |
MS.gene059294 | MS.gene62419 | 0.865394 | 6.10E-65 | -1.69E-46 |
MS.gene059326 | MS.gene62419 | 0.854252 | 1.39E-61 | -1.69E-46 |
MS.gene059342 | MS.gene62419 | 0.835226 | 1.90E-56 | -1.69E-46 |
MS.gene059366 | MS.gene62419 | 0.811722 | 6.07E-51 | -1.69E-46 |
MS.gene059420 | MS.gene62419 | 0.83642 | 9.46E-57 | -1.69E-46 |
MS.gene059518 | MS.gene62419 | 0.901867 | 1.73E-78 | -1.69E-46 |
MS.gene059536 | MS.gene62419 | 0.824856 | 6.43E-54 | -1.69E-46 |
MS.gene059597 | MS.gene62419 | 0.897454 | 1.38E-76 | -1.69E-46 |
MS.gene05959 | MS.gene62419 | 0.836632 | 8.35E-57 | -1.69E-46 |
MS.gene059676 | MS.gene62419 | 0.877845 | 4.53E-69 | -1.69E-46 |
MS.gene059688 | MS.gene62419 | 0.892544 | 1.44E-74 | -1.69E-46 |
MS.gene059692 | MS.gene62419 | 0.909023 | 9.00E-82 | -1.69E-46 |
MS.gene059695 | MS.gene62419 | 0.909081 | 8.44E-82 | -1.69E-46 |
MS.gene059708 | MS.gene62419 | 0.837583 | 4.77E-57 | -1.69E-46 |
MS.gene05984 | MS.gene62419 | 0.907261 | 6.14E-81 | -1.69E-46 |
MS.gene059894 | MS.gene62419 | 0.922885 | 5.49E-89 | -1.69E-46 |
MS.gene059899 | MS.gene62419 | 0.854271 | 1.38E-61 | -1.69E-46 |
MS.gene059960 | MS.gene62419 | 0.823333 | 1.47E-53 | -1.69E-46 |
MS.gene059974 | MS.gene62419 | 0.819711 | 1.01E-52 | -1.69E-46 |
MS.gene060005 | MS.gene62419 | 0.81684 | 4.49E-52 | -1.69E-46 |
MS.gene06037 | MS.gene62419 | 0.888745 | 4.49E-73 | -1.69E-46 |
MS.gene060403 | MS.gene62419 | 0.843009 | 1.82E-58 | -1.69E-46 |
MS.gene060407 | MS.gene62419 | 0.864044 | 1.61E-64 | -1.69E-46 |
MS.gene060476 | MS.gene62419 | 0.848355 | 6.46E-60 | -1.69E-46 |
MS.gene060495 | MS.gene62419 | 0.815394 | 9.46E-52 | -1.69E-46 |
MS.gene060804 | MS.gene62419 | 0.819008 | 1.46E-52 | -1.69E-46 |
MS.gene06090 | MS.gene62419 | 0.835453 | 1.66E-56 | -1.69E-46 |
MS.gene060986 | MS.gene62419 | 0.810594 | 1.07E-50 | -1.69E-46 |
MS.gene061049 | MS.gene62419 | 0.944566 | 1.54E-103 | -1.69E-46 |
MS.gene061051 | MS.gene62419 | -0.855665 | 5.42E-62 | -1.69E-46 |
MS.gene061112 | MS.gene62419 | 0.835616 | 1.51E-56 | -1.69E-46 |
MS.gene061154 | MS.gene62419 | 0.839742 | 1.32E-57 | -1.69E-46 |
MS.gene061159 | MS.gene62419 | 0.841407 | 4.84E-58 | -1.69E-46 |
MS.gene061265 | MS.gene62419 | 0.835164 | 1.97E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62419.t1 | MTR_4g114180 | 96.992 | 133 | 4 | 0 | 1 | 133 | 1 | 133 | 6.14e-91 | 259 |
MS.gene62419.t1 | MTR_3g107397 | 53.846 | 104 | 47 | 1 | 29 | 132 | 37 | 139 | 1.65e-33 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62419.t1 | AT3G47650 | 67.816 | 87 | 27 | 1 | 47 | 133 | 51 | 136 | 1.01e-39 | 130 |
Find 25 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGGAAACTTTCAGTCTT+TGG | 0.238603 | 8.2:-14181748 | MS.gene62419:CDS |
GAAGATTTCAAGGAAGAAAT+AGG | 0.288393 | 8.2:+14181946 | None:intergenic |
TATTTGTTTCAGGGGTAAAA+AGG | 0.295472 | 8.2:-14179773 | MS.gene62419:intron |
TTCAGAGAAACTTCCTTCAT+TGG | 0.310654 | 8.2:+14181777 | None:intergenic |
CTTTCAGTCTTTGGTAGTTA+AGG | 0.334458 | 8.2:-14181739 | MS.gene62419:intron |
TGTACACAATGCCAAGGTTC+TGG | 0.337124 | 8.2:-14179985 | MS.gene62419:CDS |
AGGAGCTGTTATTGGTAATT+CGG | 0.357554 | 8.2:-14181817 | MS.gene62419:CDS |
CCTTCATTGGAAAAGCCTTT+CGG | 0.366502 | 8.2:+14181790 | None:intergenic |
GTGGACTATGCTGGCTATGC+AGG | 0.447749 | 8.2:-14179921 | MS.gene62419:intron |
AATTTGATAGATCACTTCAA+TGG | 0.456646 | 8.2:-14179958 | MS.gene62419:CDS |
AGGTGTGTTTGAAGATTTCA+AGG | 0.464751 | 8.2:+14181936 | None:intergenic |
TGTGCTGATTGTACTGGAAA+TGG | 0.465789 | 8.2:-14180827 | MS.gene62419:intron |
ATAGTCCACCAGCTTTAAAT+CGG | 0.467197 | 8.2:+14179935 | None:intergenic |
TTAAAGCTGGTGGACTATGC+TGG | 0.490910 | 8.2:-14179930 | MS.gene62419:CDS |
TGTGGAAGCTGTAATGGGGC+TGG | 0.508502 | 8.2:-14179742 | MS.gene62419:CDS |
TTCAATGGCCGATTTAAAGC+TGG | 0.509356 | 8.2:-14179943 | MS.gene62419:CDS |
ATTGTTTGTGCTGATTGTAC+TGG | 0.511973 | 8.2:-14180833 | MS.gene62419:CDS |
GTTTCTCTGAATTCTAAAGC+TGG | 0.512309 | 8.2:-14181765 | MS.gene62419:CDS |
TGGTAATTCGGTTGTCCGAA+AGG | 0.519727 | 8.2:-14181805 | MS.gene62419:CDS |
TCAAATTAACTCCAGAACCT+TGG | 0.541033 | 8.2:+14179974 | None:intergenic |
AATGGCCGATTTAAAGCTGG+TGG | 0.561238 | 8.2:-14179940 | MS.gene62419:CDS |
GCTACAGAAGATAGTAGCAA+AGG | 0.599716 | 8.2:-14180875 | MS.gene62419:CDS |
TTGAAATCTTCAAACACACC+TGG | 0.600375 | 8.2:-14181934 | MS.gene62419:intron |
ATAGAATGTACACAATGCCA+AGG | 0.643179 | 8.2:-14179991 | MS.gene62419:CDS |
TTTGTGTGGAAGCTGTAATG+GGG | 0.699284 | 8.2:-14179746 | MS.gene62419:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGTATTTTATTTGTAAAT+TGG | + | chr8.2:14179981-14180000 | None:intergenic | 10.0% |
!!! | AAGTATTTTATTTGTAAATT+GGG | + | chr8.2:14179980-14179999 | None:intergenic | 10.0% |
!! | AAGGAATAATTTCTAAATTT+AGG | - | chr8.2:14180561-14180580 | MS.gene62419:intron | 15.0% |
!! | AATAGTAAAAACTAATTACA+GGG | + | chr8.2:14180627-14180646 | None:intergenic | 15.0% |
!! | TTATAAAAATATCTGCAAAA+AGG | + | chr8.2:14180293-14180312 | None:intergenic | 15.0% |
!! | TTATTGAAGAAAAATTAAAC+TGG | + | chr8.2:14180442-14180461 | None:intergenic | 15.0% |
!!! | GATTTTTTAAGCATATTTTA+GGG | - | chr8.2:14181190-14181209 | MS.gene62419:intron | 15.0% |
!! | AAAAGTCATAATTAAGAACA+AGG | - | chr8.2:14181504-14181523 | MS.gene62419:intron | 20.0% |
!! | ATAGTAAAAACTAATTACAG+GGG | + | chr8.2:14180626-14180645 | None:intergenic | 20.0% |
!! | ATGTATGTATATTTGTTTCA+GGG | - | chr8.2:14181893-14181912 | MS.gene62419:intron | 20.0% |
!! | CAATAGTAAAAACTAATTAC+AGG | + | chr8.2:14180628-14180647 | None:intergenic | 20.0% |
!! | TCAAATATGAAAGAATGAAA+TGG | + | chr8.2:14180362-14180381 | None:intergenic | 20.0% |
!! | TGAAATGAAAAAGAGAAATT+TGG | - | chr8.2:14180313-14180332 | MS.gene62419:intron | 20.0% |
!! | TTTCTTCAATAATAGAAAGT+AGG | - | chr8.2:14180450-14180469 | MS.gene62419:intron | 20.0% |
!!! | AGATTTCAACTTTCTTTTTA+TGG | - | chr8.2:14180884-14180903 | MS.gene62419:intron | 20.0% |
!!! | ATATTTGAAACAGTGAATTA+TGG | - | chr8.2:14180374-14180393 | MS.gene62419:intron | 20.0% |
!!! | CTTTGATTTTGATTTAATAC+AGG | - | chr8.2:14180778-14180797 | MS.gene62419:intron | 20.0% |
!!! | GAATTTGTTTCACTTTTAAT+AGG | - | chr8.2:14179838-14179857 | MS.gene62419:intron | 20.0% |
!!! | GGATTTTTTAAGCATATTTT+AGG | - | chr8.2:14181189-14181208 | MS.gene62419:intron | 20.0% |
!!! | TCATTTTCTCAAATTATCAT+TGG | - | chr8.2:14180122-14180141 | MS.gene62419:intron | 20.0% |
! | AATATACATACATGTTGCAA+AGG | + | chr8.2:14181886-14181905 | None:intergenic | 25.0% |
! | AATTTGATAGATCACTTCAA+TGG | - | chr8.2:14181717-14181736 | MS.gene62419:intron | 25.0% |
! | ACATAAAAGTTAATAGTACC+AGG | + | chr8.2:14179762-14179781 | None:intergenic | 25.0% |
! | AGAAAAATCTCCAAACTATT+GGG | + | chr8.2:14181129-14181148 | None:intergenic | 25.0% |
! | ATATACATACATGTTGCAAA+GGG | + | chr8.2:14181885-14181904 | None:intergenic | 25.0% |
! | CATGTATGTATATTTGTTTC+AGG | - | chr8.2:14181892-14181911 | MS.gene62419:intron | 25.0% |
! | GAAAAATGAGTATAAAGTGT+TGG | + | chr8.2:14181448-14181467 | None:intergenic | 25.0% |
! | GCATTAGAAATTGTAATAGT+TGG | - | chr8.2:14180531-14180550 | MS.gene62419:intron | 25.0% |
! | TCAAAATCAAAGACTTATTC+AGG | + | chr8.2:14180770-14180789 | None:intergenic | 25.0% |
! | TGAAGAAAAGTTGAAGAAAA+AGG | + | chr8.2:14181388-14181407 | None:intergenic | 25.0% |
! | TGTATGTATATTTGTTTCAG+GGG | - | chr8.2:14181894-14181913 | MS.gene62419:intron | 25.0% |
! | TTTGGATATCTGTTGTATAA+TGG | - | chr8.2:14180223-14180242 | MS.gene62419:intron | 25.0% |
!! | GATTAGTTGAATTCTATGAA+AGG | - | chr8.2:14180184-14180203 | MS.gene62419:intron | 25.0% |
!! | TGCTTTTGTTACCAATTATT+TGG | - | chr8.2:14181217-14181236 | MS.gene62419:intron | 25.0% |
AATCTTTCATGGAAAAGGTT+TGG | + | chr8.2:14181561-14181580 | None:intergenic | 30.0% | |
AATGGCGCTCATTAATTTAA+AGG | + | chr8.2:14180950-14180969 | None:intergenic | 30.0% | |
ATGAAACAGACTGCTATAAA+TGG | + | chr8.2:14180968-14180987 | None:intergenic | 30.0% | |
ATGCTCATACAAGATAACAA+AGG | + | chr8.2:14181802-14181821 | None:intergenic | 30.0% | |
ATGGATTTGAATCCATAAGA+CGG | + | chr8.2:14181339-14181358 | None:intergenic | 30.0% | |
ATGTTCGACTGTATTGTTTA+AGG | + | chr8.2:14181030-14181049 | None:intergenic | 30.0% | |
ATTCTATGAAAGGATATGTC+AGG | - | chr8.2:14180194-14180213 | MS.gene62419:intron | 30.0% | |
CTACCTACATATTATGAATC+AGG | - | chr8.2:14181590-14181609 | MS.gene62419:intron | 30.0% | |
CTGAATATAATCACATGTGT+CGG | + | chr8.2:14180097-14180116 | None:intergenic | 30.0% | |
GAAAGAATGAAATGGAATCA+AGG | + | chr8.2:14180354-14180373 | None:intergenic | 30.0% | |
GAAGATTTCAAGGAAGAAAT+AGG | + | chr8.2:14179732-14179751 | None:intergenic | 30.0% | |
GAGAAAAATCTCCAAACTAT+TGG | + | chr8.2:14181130-14181149 | None:intergenic | 30.0% | |
GATCCTGATTCATAATATGT+AGG | + | chr8.2:14181596-14181615 | None:intergenic | 30.0% | |
GCAAAGGGATGATTATAATA+TGG | + | chr8.2:14181870-14181889 | None:intergenic | 30.0% | |
TATTGGGCTGATGTTTATAA+TGG | + | chr8.2:14181300-14181319 | None:intergenic | 30.0% | |
TATTTGTTTCAGGGGTAAAA+AGG | - | chr8.2:14181902-14181921 | MS.gene62419:intron | 30.0% | |
TTCTATGAAAGGATATGTCA+GGG | - | chr8.2:14180195-14180214 | MS.gene62419:intron | 30.0% | |
! | ACCTTTTCCATGAAAGATTT+AGG | - | chr8.2:14181562-14181581 | MS.gene62419:intron | 30.0% |
! | ATAACTTTTTGCTCAATTCC+AGG | - | chr8.2:14181657-14181676 | MS.gene62419:intron | 30.0% |
! | CTTCAACTTTTCTTCATGTT+TGG | - | chr8.2:14181392-14181411 | MS.gene62419:intron | 30.0% |
! | CTTTTAATAGGAGCTGTTAT+TGG | - | chr8.2:14179850-14179869 | MS.gene62419:intron | 30.0% |
! | GGTAAAAAGGATATTTTGTG+TGG | - | chr8.2:14181915-14181934 | MS.gene62419:intron | 30.0% |
! | GTTACCAATTATTTGGAGTT+GGG | - | chr8.2:14181224-14181243 | MS.gene62419:intron | 30.0% |
! | TAGTTTTTACTATTGTGTCG+TGG | - | chr8.2:14180633-14180652 | MS.gene62419:intron | 30.0% |
! | TGTTACCAATTATTTGGAGT+TGG | - | chr8.2:14181223-14181242 | MS.gene62419:intron | 30.0% |
! | TTACCAATTATTTGGAGTTG+GGG | - | chr8.2:14181225-14181244 | MS.gene62419:intron | 30.0% |
! | TTGATGCATTGACATCTATT+GGG | + | chr8.2:14181316-14181335 | None:intergenic | 30.0% |
!! | AAATGAGTATAAAGTGTTGG+AGG | + | chr8.2:14181445-14181464 | None:intergenic | 30.0% |
!! | ATTGTTGTTGATGATTCTCT+AGG | - | chr8.2:14181168-14181187 | MS.gene62419:intron | 30.0% |
!! | GAAGAGAAGTGTTGAAATAA+CGG | - | chr8.2:14180665-14180684 | MS.gene62419:intron | 30.0% |
!!! | TGTAATAGTTGGCTTTTTGA+AGG | - | chr8.2:14180542-14180561 | MS.gene62419:intron | 30.0% |
AGAATGAAATGGAATCAAGG+AGG | + | chr8.2:14180351-14180370 | None:intergenic | 35.0% | |
AGGTGTGTTTGAAGATTTCA+AGG | + | chr8.2:14179742-14179761 | None:intergenic | 35.0% | |
ATAGAATGTACACAATGCCA+AGG | - | chr8.2:14181684-14181703 | MS.gene62419:intron | 35.0% | |
ATCATAAAGATTGCTTCGAC+TGG | - | chr8.2:14181630-14181649 | MS.gene62419:intron | 35.0% | |
CAAACTATTGGGTTATCTCA+CGG | + | chr8.2:14181118-14181137 | None:intergenic | 35.0% | |
CAAAGGCTATGGAATATACT+AGG | + | chr8.2:14180402-14180421 | None:intergenic | 35.0% | |
CTAGTATATTCCATAGCCTT+TGG | - | chr8.2:14180400-14180419 | MS.gene62419:intron | 35.0% | |
CTATGACAAGTATCAGGAAA+AGG | + | chr8.2:14180737-14180756 | None:intergenic | 35.0% | |
GAAGAAAAAGGATAAGTACG+AGG | + | chr8.2:14181376-14181395 | None:intergenic | 35.0% | |
GCCTAAATCTTTCATGGAAA+AGG | + | chr8.2:14181566-14181585 | None:intergenic | 35.0% | |
GTGTAACTGTGTTATGTTCT+TGG | - | chr8.2:14181822-14181841 | MS.gene62419:intron | 35.0% | |
GTGTACAACAGATCTGTAAT+AGG | - | chr8.2:14180706-14180725 | MS.gene62419:intron | 35.0% | |
GTTGAAATAACGGTTAGAGT+TGG | - | chr8.2:14180675-14180694 | MS.gene62419:intron | 35.0% | |
TAAGTACGAGGAAAAAGAGA+AGG | + | chr8.2:14181364-14181383 | None:intergenic | 35.0% | |
TATTGTGTCGTGGTTAACAA+TGG | - | chr8.2:14180643-14180662 | MS.gene62419:intron | 35.0% | |
TCAAATTAACTCCAGAACCT+TGG | + | chr8.2:14181704-14181723 | None:intergenic | 35.0% | |
TCATAAAGATTGCTTCGACT+GGG | - | chr8.2:14181631-14181650 | MS.gene62419:intron | 35.0% | |
TTCAGAGAAACTTCCTTCAT+TGG | + | chr8.2:14179901-14179920 | None:intergenic | 35.0% | |
TTGAAATCTTCAAACACACC+TGG | - | chr8.2:14179741-14179760 | MS.gene62419:CDS | 35.0% | |
! | AACTAATCTATGAAGCACTC+CGG | + | chr8.2:14180172-14180191 | None:intergenic | 35.0% |
! | ACTTTTCTTCATGTTTGGCT+AGG | - | chr8.2:14181397-14181416 | MS.gene62419:intron | 35.0% |
! | AGGAGCTGTTATTGGTAATT+CGG | - | chr8.2:14179858-14179877 | MS.gene62419:intron | 35.0% |
! | ATTTTGTGTGGAAGCTGTAA+TGG | - | chr8.2:14181927-14181946 | MS.gene62419:intron | 35.0% |
! | CTTTCAGTCTTTGGTAGTTA+AGG | - | chr8.2:14179936-14179955 | MS.gene62419:CDS | 35.0% |
! | GTTGATGCATTGACATCTAT+TGG | + | chr8.2:14181317-14181336 | None:intergenic | 35.0% |
! | TTTTGTGTGGAAGCTGTAAT+GGG | - | chr8.2:14181928-14181947 | MS.gene62419:intron | 35.0% |
!! | ATAGTCCACCAGCTTTAAAT+CGG | + | chr8.2:14181743-14181762 | None:intergenic | 35.0% |
!! | ATTGTTTGTGCTGATTGTAC+TGG | - | chr8.2:14180842-14180861 | MS.gene62419:CDS | 35.0% |
!! | GTTTCTCTGAATTCTAAAGC+TGG | - | chr8.2:14179910-14179929 | MS.gene62419:intron | 35.0% |
ACACGTCTTCAATCAAAGGT+TGG | + | chr8.2:14180040-14180059 | None:intergenic | 40.0% | |
AGCTGGAAACTTTCAGTCTT+TGG | - | chr8.2:14179927-14179946 | MS.gene62419:CDS | 40.0% | |
AGCTTCGCCTAAATCTTTCA+TGG | + | chr8.2:14181572-14181591 | None:intergenic | 40.0% | |
ATGCAGCTATGACAAGTATC+AGG | + | chr8.2:14180743-14180762 | None:intergenic | 40.0% | |
CCTTCATTGGAAAAGCCTTT+CGG | + | chr8.2:14179888-14179907 | None:intergenic | 40.0% | |
CGTGAGATAACCCAATAGTT+TGG | - | chr8.2:14181116-14181135 | MS.gene62419:intron | 40.0% | |
GATCCCCAACTCCAAATAAT+TGG | + | chr8.2:14181231-14181250 | None:intergenic | 40.0% | |
GCTACAGAAGATAGTAGCAA+AGG | - | chr8.2:14180800-14180819 | MS.gene62419:intron | 40.0% | |
TACTGATCTACCAAAGGCTA+TGG | + | chr8.2:14180413-14180432 | None:intergenic | 40.0% | |
TCAATGCATCAACCGTCTTA+TGG | - | chr8.2:14181324-14181343 | MS.gene62419:intron | 40.0% | |
TGTGTACATTCTATTGCACC+TGG | + | chr8.2:14181678-14181697 | None:intergenic | 40.0% | |
TTACAGGGGTCTTACTAAAG+AGG | + | chr8.2:14180612-14180631 | None:intergenic | 40.0% | |
TTTGTGTGGAAGCTGTAATG+GGG | - | chr8.2:14181929-14181948 | MS.gene62419:intron | 40.0% | |
! | AAATGGAATCAAGGAGGCAT+AGG | + | chr8.2:14180345-14180364 | None:intergenic | 40.0% |
! | ACTAATCTATGAAGCACTCC+GGG | + | chr8.2:14180171-14180190 | None:intergenic | 40.0% |
! | AGGATCCTTAAAGAGTACAC+CGG | - | chr8.2:14180581-14180600 | MS.gene62419:intron | 40.0% |
! | AGTCTTTGGTAGTTAAGGTG+AGG | - | chr8.2:14179941-14179960 | MS.gene62419:CDS | 40.0% |
! | CTACTGTACTGATCTACCAA+AGG | + | chr8.2:14180419-14180438 | None:intergenic | 40.0% |
! | GGGCTGATGTTTATAATGGA+AGG | + | chr8.2:14181296-14181315 | None:intergenic | 40.0% |
! | TTCAATGGCCGATTTAAAGC+TGG | - | chr8.2:14181732-14181751 | MS.gene62419:intron | 40.0% |
!! | TGTGCTGATTGTACTGGAAA+TGG | - | chr8.2:14180848-14180867 | MS.gene62419:CDS | 40.0% |
!!! | TGTAATGGGGCTGGTTTTAT+TGG | - | chr8.2:14181942-14181961 | MS.gene62419:CDS | 40.0% |
ACACCAGAACATGTCAACAC+TGG | + | chr8.2:14180063-14180082 | None:intergenic | 45.0% | |
CAAAGACACTATGTTCTCGC+CGG | + | chr8.2:14181067-14181086 | None:intergenic | 45.0% | |
CGAGGAAAAAGAGAAGGACA+TGG | + | chr8.2:14181358-14181377 | None:intergenic | 45.0% | |
CTGGACACGTCTTCAATCAA+AGG | + | chr8.2:14180044-14180063 | None:intergenic | 45.0% | |
GGATATGTCAGGGCTATGTT+TGG | - | chr8.2:14180205-14180224 | MS.gene62419:intron | 45.0% | |
TCTTACTAAAGAGGTTCCCC+CGG | + | chr8.2:14180603-14180622 | None:intergenic | 45.0% | |
TGGTAATTCGGTTGTCCGAA+AGG | - | chr8.2:14179870-14179889 | MS.gene62419:intron | 45.0% | |
TGTACACAATGCCAAGGTTC+TGG | - | chr8.2:14181690-14181709 | MS.gene62419:intron | 45.0% | |
! | AATGGCCGATTTAAAGCTGG+TGG | - | chr8.2:14181735-14181754 | MS.gene62419:intron | 45.0% |
! | ATCCTTAAAGAGTACACCGG+GGG | - | chr8.2:14180584-14180603 | MS.gene62419:intron | 45.0% |
! | CCGAAAGGCTTTTCCAATGA+AGG | - | chr8.2:14179885-14179904 | MS.gene62419:intron | 45.0% |
! | GATCCTTAAAGAGTACACCG+GGG | - | chr8.2:14180583-14180602 | MS.gene62419:intron | 45.0% |
! | GGATCCTTAAAGAGTACACC+GGG | - | chr8.2:14180582-14180601 | MS.gene62419:intron | 45.0% |
!! | GTCGAACATCATGCTGATTC+CGG | - | chr8.2:14181041-14181060 | MS.gene62419:intron | 45.0% |
!! | TGTCCAGTGTTGACATGTTC+TGG | - | chr8.2:14180057-14180076 | MS.gene62419:intron | 45.0% |
!! | TTAAAGCTGGTGGACTATGC+TGG | - | chr8.2:14181745-14181764 | MS.gene62419:CDS | 45.0% |
!!! | AATGGGGCTGGTTTTATTGG+TGG | - | chr8.2:14181945-14181964 | MS.gene62419:CDS | 45.0% |
TTCCCCCGGTGTACTCTTTA+AGG | + | chr8.2:14180589-14180608 | None:intergenic | 50.0% | |
!! | AACATCATGCTGATTCCGGC+CGG | - | chr8.2:14181045-14181064 | MS.gene62419:intron | 50.0% |
ACGTGTCTCAGTCGTTGTCC+CGG | - | chr8.2:14180150-14180169 | MS.gene62419:intron | 55.0% | |
! | GTGGACTATGCTGGCTATGC+AGG | - | chr8.2:14181754-14181773 | MS.gene62419:CDS | 55.0% |
! | TGTGGAAGCTGTAATGGGGC+TGG | - | chr8.2:14181933-14181952 | MS.gene62419:intron | 55.0% |
GACACTATGTTCTCGCCGGC+CGG | + | chr8.2:14181063-14181082 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 14179705 | 14181992 | 14179705 | ID=MS.gene62419 |
chr8.2 | mRNA | 14179705 | 14181992 | 14179705 | ID=MS.gene62419.t1;Parent=MS.gene62419 |
chr8.2 | exon | 14181935 | 14181992 | 14181935 | ID=MS.gene62419.t1.exon1;Parent=MS.gene62419.t1 |
chr8.2 | CDS | 14181935 | 14181992 | 14181935 | ID=cds.MS.gene62419.t1;Parent=MS.gene62419.t1 |
chr8.2 | exon | 14181740 | 14181837 | 14181740 | ID=MS.gene62419.t1.exon2;Parent=MS.gene62419.t1 |
chr8.2 | CDS | 14181740 | 14181837 | 14181740 | ID=cds.MS.gene62419.t1;Parent=MS.gene62419.t1 |
chr8.2 | exon | 14180828 | 14180897 | 14180828 | ID=MS.gene62419.t1.exon3;Parent=MS.gene62419.t1 |
chr8.2 | CDS | 14180828 | 14180897 | 14180828 | ID=cds.MS.gene62419.t1;Parent=MS.gene62419.t1 |
chr8.2 | exon | 14179922 | 14180018 | 14179922 | ID=MS.gene62419.t1.exon4;Parent=MS.gene62419.t1 |
chr8.2 | CDS | 14179922 | 14180018 | 14179922 | ID=cds.MS.gene62419.t1;Parent=MS.gene62419.t1 |
chr8.2 | exon | 14179705 | 14179783 | 14179705 | ID=MS.gene62419.t1.exon5;Parent=MS.gene62419.t1 |
chr8.2 | CDS | 14179705 | 14179783 | 14179705 | ID=cds.MS.gene62419.t1;Parent=MS.gene62419.t1 |
Gene Sequence |
Protein sequence |