Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08665.t1 | XP_013455971.1 | 97.9 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 4.40E-70 | 273.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08665.t1 | A0A072UJY4 | 97.9 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 3.1e-70 | 273.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049149 | MS.gene08665 | 0.80595 | 1.04E-49 | -1.69E-46 |
MS.gene049150 | MS.gene08665 | 0.826497 | 2.63E-54 | -1.69E-46 |
MS.gene049151 | MS.gene08665 | 0.829449 | 5.12E-55 | -1.69E-46 |
MS.gene049153 | MS.gene08665 | 0.830538 | 2.78E-55 | -1.69E-46 |
MS.gene049260 | MS.gene08665 | 0.831872 | 1.30E-55 | -1.69E-46 |
MS.gene049284 | MS.gene08665 | 0.8389 | 2.18E-57 | -1.69E-46 |
MS.gene049297 | MS.gene08665 | 0.82794 | 1.18E-54 | -1.69E-46 |
MS.gene049346 | MS.gene08665 | 0.841274 | 5.25E-58 | -1.69E-46 |
MS.gene049351 | MS.gene08665 | 0.840499 | 8.38E-58 | -1.69E-46 |
MS.gene049378 | MS.gene08665 | 0.805026 | 1.63E-49 | -1.69E-46 |
MS.gene049389 | MS.gene08665 | 0.813877 | 2.05E-51 | -1.69E-46 |
MS.gene049491 | MS.gene08665 | 0.843537 | 1.32E-58 | -1.69E-46 |
MS.gene049599 | MS.gene08665 | -0.858889 | 6.04E-63 | -1.69E-46 |
MS.gene049661 | MS.gene08665 | 0.853364 | 2.51E-61 | -1.69E-46 |
MS.gene049662 | MS.gene08665 | 0.859494 | 3.98E-63 | -1.69E-46 |
MS.gene049758 | MS.gene08665 | 0.926518 | 4.20E-91 | -1.69E-46 |
MS.gene049910 | MS.gene08665 | 0.854169 | 1.47E-61 | -1.69E-46 |
MS.gene049915 | MS.gene08665 | 0.841682 | 4.10E-58 | -1.69E-46 |
MS.gene050076 | MS.gene08665 | 0.861061 | 1.34E-63 | -1.69E-46 |
MS.gene050099 | MS.gene08665 | 0.839478 | 1.55E-57 | -1.69E-46 |
MS.gene050128 | MS.gene08665 | 0.859954 | 2.89E-63 | -1.69E-46 |
MS.gene050226 | MS.gene08665 | 0.804208 | 2.41E-49 | -1.69E-46 |
MS.gene050227 | MS.gene08665 | 0.810303 | 1.23E-50 | -1.69E-46 |
MS.gene050301 | MS.gene08665 | 0.905195 | 5.55E-80 | -1.69E-46 |
MS.gene050319 | MS.gene08665 | -0.80843 | 3.11E-50 | -1.69E-46 |
MS.gene050330 | MS.gene08665 | -0.812509 | 4.09E-51 | -1.69E-46 |
MS.gene050397 | MS.gene08665 | 0.883307 | 5.01E-71 | -1.69E-46 |
MS.gene050404 | MS.gene08665 | 0.833635 | 4.76E-56 | -1.69E-46 |
MS.gene050406 | MS.gene08665 | 0.846964 | 1.56E-59 | -1.69E-46 |
MS.gene050426 | MS.gene08665 | -0.814346 | 1.61E-51 | -1.69E-46 |
MS.gene050432 | MS.gene08665 | 0.832237 | 1.06E-55 | -1.69E-46 |
MS.gene050464 | MS.gene08665 | 0.881945 | 1.57E-70 | -1.69E-46 |
MS.gene050529 | MS.gene08665 | 0.899334 | 2.20E-77 | -1.69E-46 |
MS.gene050558 | MS.gene08665 | 0.843289 | 1.54E-58 | -1.69E-46 |
MS.gene050623 | MS.gene08665 | -0.831542 | 1.57E-55 | -1.69E-46 |
MS.gene050642 | MS.gene08665 | 0.859554 | 3.82E-63 | -1.69E-46 |
MS.gene050670 | MS.gene08665 | 0.827064 | 1.92E-54 | -1.69E-46 |
MS.gene050971 | MS.gene08665 | 0.808318 | 3.29E-50 | -1.69E-46 |
MS.gene05101 | MS.gene08665 | 0.885308 | 9.10E-72 | -1.69E-46 |
MS.gene05119 | MS.gene08665 | -0.840542 | 8.16E-58 | -1.69E-46 |
MS.gene051240 | MS.gene08665 | 0.800407 | 1.46E-48 | -1.69E-46 |
MS.gene051471 | MS.gene08665 | 0.874315 | 7.43E-68 | -1.69E-46 |
MS.gene051582 | MS.gene08665 | 0.829631 | 4.62E-55 | -1.69E-46 |
MS.gene051662 | MS.gene08665 | 0.878262 | 3.24E-69 | -1.69E-46 |
MS.gene051663 | MS.gene08665 | 0.88125 | 2.81E-70 | -1.69E-46 |
MS.gene051860 | MS.gene08665 | 0.89712 | 1.91E-76 | -1.69E-46 |
MS.gene051877 | MS.gene08665 | 0.829472 | 5.05E-55 | -1.69E-46 |
MS.gene051983 | MS.gene08665 | 0.853739 | 1.96E-61 | -1.69E-46 |
MS.gene052011 | MS.gene08665 | -0.818156 | 2.27E-52 | -1.69E-46 |
MS.gene052077 | MS.gene08665 | 0.881655 | 2.00E-70 | -1.69E-46 |
MS.gene052078 | MS.gene08665 | 0.89859 | 4.57E-77 | -1.69E-46 |
MS.gene052178 | MS.gene08665 | 0.886535 | 3.14E-72 | -1.69E-46 |
MS.gene052188 | MS.gene08665 | 0.876262 | 1.61E-68 | -1.69E-46 |
MS.gene052207 | MS.gene08665 | 0.82897 | 6.68E-55 | -1.69E-46 |
MS.gene052253 | MS.gene08665 | 0.86249 | 4.89E-64 | -1.69E-46 |
MS.gene052255 | MS.gene08665 | 0.80962 | 1.73E-50 | -1.69E-46 |
MS.gene052309 | MS.gene08665 | -0.804114 | 2.52E-49 | -1.69E-46 |
MS.gene052310 | MS.gene08665 | 0.880769 | 4.18E-70 | -1.69E-46 |
MS.gene052326 | MS.gene08665 | 0.846443 | 2.16E-59 | -1.69E-46 |
MS.gene05233 | MS.gene08665 | -0.801144 | 1.03E-48 | -1.69E-46 |
MS.gene052340 | MS.gene08665 | 0.881059 | 3.29E-70 | -1.69E-46 |
MS.gene052344 | MS.gene08665 | -0.807004 | 6.25E-50 | -1.69E-46 |
MS.gene052481 | MS.gene08665 | 0.801094 | 1.06E-48 | -1.69E-46 |
MS.gene052485 | MS.gene08665 | 0.8221 | 2.84E-53 | -1.69E-46 |
MS.gene052600 | MS.gene08665 | 0.808281 | 3.35E-50 | -1.69E-46 |
MS.gene052917 | MS.gene08665 | -0.821299 | 4.35E-53 | -1.69E-46 |
MS.gene05316 | MS.gene08665 | 0.814693 | 1.35E-51 | -1.69E-46 |
MS.gene053181 | MS.gene08665 | 0.807064 | 6.07E-50 | -1.69E-46 |
MS.gene053209 | MS.gene08665 | 0.841799 | 3.82E-58 | -1.69E-46 |
MS.gene053557 | MS.gene08665 | 0.868811 | 4.95E-66 | -1.69E-46 |
MS.gene053559 | MS.gene08665 | 0.821878 | 3.19E-53 | -1.69E-46 |
MS.gene053836 | MS.gene08665 | 0.93238 | 9.29E-95 | -1.69E-46 |
MS.gene053907 | MS.gene08665 | 0.837547 | 4.87E-57 | -1.69E-46 |
MS.gene053928 | MS.gene08665 | 0.811473 | 6.88E-51 | -1.69E-46 |
MS.gene053971 | MS.gene08665 | 0.84357 | 1.29E-58 | -1.69E-46 |
MS.gene054010 | MS.gene08665 | 0.808105 | 3.65E-50 | -1.69E-46 |
MS.gene054011 | MS.gene08665 | 0.841219 | 5.43E-58 | -1.69E-46 |
MS.gene054012 | MS.gene08665 | 0.827049 | 1.94E-54 | -1.69E-46 |
MS.gene054013 | MS.gene08665 | 0.819781 | 9.70E-53 | -1.69E-46 |
MS.gene054123 | MS.gene08665 | 0.85372 | 1.98E-61 | -1.69E-46 |
MS.gene054183 | MS.gene08665 | 0.812002 | 5.28E-51 | -1.69E-46 |
MS.gene054184 | MS.gene08665 | 0.813646 | 2.30E-51 | -1.69E-46 |
MS.gene054185 | MS.gene08665 | 0.814325 | 1.63E-51 | -1.69E-46 |
MS.gene054214 | MS.gene08665 | 0.801889 | 7.28E-49 | -1.69E-46 |
MS.gene054349 | MS.gene08665 | 0.846497 | 2.09E-59 | -1.69E-46 |
MS.gene054473 | MS.gene08665 | 0.878073 | 3.77E-69 | -1.69E-46 |
MS.gene054542 | MS.gene08665 | 0.844033 | 9.71E-59 | -1.69E-46 |
MS.gene05455 | MS.gene08665 | 0.842435 | 2.59E-58 | -1.69E-46 |
MS.gene054667 | MS.gene08665 | 0.823743 | 1.18E-53 | -1.69E-46 |
MS.gene05467 | MS.gene08665 | -0.805891 | 1.07E-49 | -1.69E-46 |
MS.gene054930 | MS.gene08665 | 0.84765 | 1.01E-59 | -1.69E-46 |
MS.gene054942 | MS.gene08665 | 0.829216 | 5.83E-55 | -1.69E-46 |
MS.gene054955 | MS.gene08665 | 0.828616 | 8.14E-55 | -1.69E-46 |
MS.gene054983 | MS.gene08665 | 0.885696 | 6.51E-72 | -1.69E-46 |
MS.gene055116 | MS.gene08665 | 0.861531 | 9.61E-64 | -1.69E-46 |
MS.gene055277 | MS.gene08665 | 0.90666 | 1.17E-80 | -1.69E-46 |
MS.gene055390 | MS.gene08665 | 0.872673 | 2.65E-67 | -1.69E-46 |
MS.gene055422 | MS.gene08665 | 0.913273 | 7.45E-84 | -1.69E-46 |
MS.gene055428 | MS.gene08665 | 0.910282 | 2.23E-82 | -1.69E-46 |
MS.gene055533 | MS.gene08665 | 0.812952 | 3.27E-51 | -1.69E-46 |
MS.gene05553 | MS.gene08665 | 0.836933 | 7.00E-57 | -1.69E-46 |
MS.gene055604 | MS.gene08665 | 0.847595 | 1.05E-59 | -1.69E-46 |
MS.gene055712 | MS.gene08665 | 0.858675 | 7.00E-63 | -1.69E-46 |
MS.gene055859 | MS.gene08665 | 0.833137 | 6.34E-56 | -1.69E-46 |
MS.gene055896 | MS.gene08665 | 0.814748 | 1.32E-51 | -1.69E-46 |
MS.gene056069 | MS.gene08665 | -0.804365 | 2.24E-49 | -1.69E-46 |
MS.gene056191 | MS.gene08665 | 0.840181 | 1.02E-57 | -1.69E-46 |
MS.gene056314 | MS.gene08665 | 0.821231 | 4.51E-53 | -1.69E-46 |
MS.gene056407 | MS.gene08665 | 0.8405 | 8.38E-58 | -1.69E-46 |
MS.gene056410 | MS.gene08665 | 0.821235 | 4.50E-53 | -1.69E-46 |
MS.gene056451 | MS.gene08665 | 0.817891 | 2.61E-52 | -1.69E-46 |
MS.gene056609 | MS.gene08665 | 0.842027 | 3.32E-58 | -1.69E-46 |
MS.gene056612 | MS.gene08665 | 0.904643 | 9.90E-80 | -1.69E-46 |
MS.gene056659 | MS.gene08665 | 0.803447 | 3.47E-49 | -1.69E-46 |
MS.gene056723 | MS.gene08665 | 0.806359 | 8.55E-50 | -1.69E-46 |
MS.gene056772 | MS.gene08665 | 0.838522 | 2.74E-57 | -1.69E-46 |
MS.gene056796 | MS.gene08665 | 0.813238 | 2.83E-51 | -1.69E-46 |
MS.gene056875 | MS.gene08665 | 0.847093 | 1.44E-59 | -1.69E-46 |
MS.gene056899 | MS.gene08665 | -0.846645 | 1.91E-59 | -1.69E-46 |
MS.gene056979 | MS.gene08665 | 0.84229 | 2.83E-58 | -1.69E-46 |
MS.gene05702 | MS.gene08665 | 0.883822 | 3.24E-71 | -1.69E-46 |
MS.gene057121 | MS.gene08665 | 0.874552 | 6.18E-68 | -1.69E-46 |
MS.gene057123 | MS.gene08665 | 0.823191 | 1.58E-53 | -1.69E-46 |
MS.gene057245 | MS.gene08665 | 0.853842 | 1.83E-61 | -1.69E-46 |
MS.gene057260 | MS.gene08665 | 0.837033 | 6.60E-57 | -1.69E-46 |
MS.gene057295 | MS.gene08665 | 0.826088 | 3.29E-54 | -1.69E-46 |
MS.gene05733 | MS.gene08665 | 0.841825 | 3.76E-58 | -1.69E-46 |
MS.gene057396 | MS.gene08665 | 0.812531 | 4.05E-51 | -1.69E-46 |
MS.gene057439 | MS.gene08665 | 0.870696 | 1.20E-66 | -1.69E-46 |
MS.gene057448 | MS.gene08665 | 0.845624 | 3.62E-59 | -1.69E-46 |
MS.gene057449 | MS.gene08665 | 0.831549 | 1.57E-55 | -1.69E-46 |
MS.gene057450 | MS.gene08665 | 0.854225 | 1.42E-61 | -1.69E-46 |
MS.gene057469 | MS.gene08665 | 0.806992 | 6.28E-50 | -1.69E-46 |
MS.gene057749 | MS.gene08665 | 0.823456 | 1.37E-53 | -1.69E-46 |
MS.gene057754 | MS.gene08665 | 0.819562 | 1.09E-52 | -1.69E-46 |
MS.gene057779 | MS.gene08665 | 0.816459 | 5.47E-52 | -1.69E-46 |
MS.gene057782 | MS.gene08665 | 0.809351 | 1.98E-50 | -1.69E-46 |
MS.gene057794 | MS.gene08665 | 0.811311 | 7.46E-51 | -1.69E-46 |
MS.gene057796 | MS.gene08665 | 0.830724 | 2.50E-55 | -1.69E-46 |
MS.gene057823 | MS.gene08665 | 0.80907 | 2.27E-50 | -1.69E-46 |
MS.gene058002 | MS.gene08665 | 0.905182 | 5.63E-80 | -1.69E-46 |
MS.gene058082 | MS.gene08665 | 0.838281 | 3.16E-57 | -1.69E-46 |
MS.gene05811 | MS.gene08665 | 0.915295 | 6.98E-85 | -1.69E-46 |
MS.gene058142 | MS.gene08665 | 0.856781 | 2.55E-62 | -1.69E-46 |
MS.gene058233 | MS.gene08665 | 0.861002 | 1.39E-63 | -1.69E-46 |
MS.gene058236 | MS.gene08665 | 0.802888 | 4.53E-49 | -1.69E-46 |
MS.gene058276 | MS.gene08665 | 0.844939 | 5.54E-59 | -1.69E-46 |
MS.gene058293 | MS.gene08665 | 0.836294 | 1.02E-56 | -1.69E-46 |
MS.gene058365 | MS.gene08665 | 0.824651 | 7.19E-54 | -1.69E-46 |
MS.gene05842 | MS.gene08665 | 0.812608 | 3.89E-51 | -1.69E-46 |
MS.gene05856 | MS.gene08665 | 0.800137 | 1.66E-48 | -1.69E-46 |
MS.gene058660 | MS.gene08665 | 0.886862 | 2.36E-72 | -1.69E-46 |
MS.gene058710 | MS.gene08665 | 0.835842 | 1.33E-56 | -1.69E-46 |
MS.gene058749 | MS.gene08665 | 0.845523 | 3.85E-59 | -1.69E-46 |
MS.gene058787 | MS.gene08665 | 0.833628 | 4.78E-56 | -1.69E-46 |
MS.gene058845 | MS.gene08665 | 0.884997 | 1.19E-71 | -1.69E-46 |
MS.gene05886 | MS.gene08665 | 0.814216 | 1.72E-51 | -1.69E-46 |
MS.gene058928 | MS.gene08665 | 0.841853 | 3.69E-58 | -1.69E-46 |
MS.gene059033 | MS.gene08665 | -0.809807 | 1.58E-50 | -1.69E-46 |
MS.gene05907 | MS.gene08665 | 0.911669 | 4.68E-83 | -1.69E-46 |
MS.gene059285 | MS.gene08665 | 0.862066 | 6.59E-64 | -1.69E-46 |
MS.gene059294 | MS.gene08665 | 0.86133 | 1.11E-63 | -1.69E-46 |
MS.gene059326 | MS.gene08665 | 0.83485 | 2.36E-56 | -1.69E-46 |
MS.gene059420 | MS.gene08665 | 0.824999 | 5.95E-54 | -1.69E-46 |
MS.gene059518 | MS.gene08665 | 0.884063 | 2.64E-71 | -1.69E-46 |
MS.gene059597 | MS.gene08665 | 0.899751 | 1.45E-77 | -1.69E-46 |
MS.gene05959 | MS.gene08665 | 0.835825 | 1.34E-56 | -1.69E-46 |
MS.gene059676 | MS.gene08665 | 0.850322 | 1.83E-60 | -1.69E-46 |
MS.gene059688 | MS.gene08665 | 0.861718 | 8.43E-64 | -1.69E-46 |
MS.gene059692 | MS.gene08665 | 0.871431 | 6.87E-67 | -1.69E-46 |
MS.gene059695 | MS.gene08665 | 0.866823 | 2.15E-65 | -1.69E-46 |
MS.gene059708 | MS.gene08665 | 0.832861 | 7.43E-56 | -1.69E-46 |
MS.gene05984 | MS.gene08665 | 0.908305 | 1.98E-81 | -1.69E-46 |
MS.gene059894 | MS.gene08665 | 0.907957 | 2.89E-81 | -1.69E-46 |
MS.gene059899 | MS.gene08665 | 0.861658 | 8.79E-64 | -1.69E-46 |
MS.gene06037 | MS.gene08665 | 0.884648 | 1.60E-71 | -1.69E-46 |
MS.gene060403 | MS.gene08665 | 0.825894 | 3.65E-54 | -1.69E-46 |
MS.gene060407 | MS.gene08665 | 0.832207 | 1.08E-55 | -1.69E-46 |
MS.gene060476 | MS.gene08665 | 0.870764 | 1.14E-66 | -1.69E-46 |
MS.gene060495 | MS.gene08665 | 0.836257 | 1.04E-56 | -1.69E-46 |
MS.gene06090 | MS.gene08665 | 0.817937 | 2.55E-52 | -1.69E-46 |
MS.gene060986 | MS.gene08665 | 0.808082 | 3.69E-50 | -1.69E-46 |
MS.gene061049 | MS.gene08665 | 0.928125 | 4.49E-92 | -1.69E-46 |
MS.gene061051 | MS.gene08665 | -0.858944 | 5.82E-63 | -1.69E-46 |
MS.gene061112 | MS.gene08665 | 0.836415 | 9.49E-57 | -1.69E-46 |
MS.gene061159 | MS.gene08665 | 0.80256 | 5.30E-49 | -1.69E-46 |
MS.gene061265 | MS.gene08665 | 0.839904 | 1.20E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08665.t1 | MTR_4g057845 | 97.917 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 4.52e-101 | 286 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08665.t1 | AT3G45050 | 63.235 | 136 | 48 | 2 | 11 | 144 | 23 | 158 | 2.17e-52 | 163 |
MS.gene08665.t1 | AT3G45050 | 63.235 | 136 | 48 | 2 | 11 | 144 | 23 | 158 | 2.17e-52 | 163 |
MS.gene08665.t1 | AT3G45050 | 63.235 | 136 | 48 | 2 | 11 | 144 | 23 | 158 | 2.17e-52 | 163 |
MS.gene08665.t1 | AT3G45050 | 59.633 | 109 | 42 | 2 | 10 | 116 | 22 | 130 | 1.01e-34 | 117 |
Find 27 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACGTATCCTTCACCTTTGC+AGG | 0.266782 | 4.4:+45569390 | None:intergenic |
GGTAAGCAGCGAAGTGATAT+TGG | 0.298796 | 4.4:+45571818 | None:intergenic |
GTGCAGTAGCTCCACTTCTT+TGG | 0.304778 | 4.4:+45569202 | None:intergenic |
CTGTGTGGACTCAGAAGTTT+TGG | 0.321230 | 4.4:+45570315 | None:intergenic |
TGCGAAGCTTGTGGAGGTTC+TGG | 0.323223 | 4.4:-45569424 | MS.gene08665:CDS |
TACTGCACAAAATGCTCTTC+TGG | 0.383793 | 4.4:-45569187 | MS.gene08665:CDS |
GTAAGCAGCGAAGTGATATT+GGG | 0.423565 | 4.4:+45571819 | None:intergenic |
TATCCTTCACCTTTGCAGGC+TGG | 0.492824 | 4.4:+45569394 | None:intergenic |
AAACATGGCAACTCGATTCA+CGG | 0.496179 | 4.4:-45569317 | MS.gene08665:CDS |
GCCACGGAAACTGCAGTCTC+AGG | 0.499889 | 4.4:+45570388 | None:intergenic |
TGTTCAACATGTGGTGGAAG+TGG | 0.503858 | 4.4:-45569157 | MS.gene08665:CDS |
TGAAGTCACAATTGCAAACA+AGG | 0.519947 | 4.4:-45570438 | MS.gene08665:CDS |
TTCTGAAGAAAGTGCTGAGA+AGG | 0.545376 | 4.4:-45569356 | MS.gene08665:CDS |
TTCAAAGAATGCGAAGCTTG+TGG | 0.553196 | 4.4:-45569433 | MS.gene08665:CDS |
TGGCAACTCGATTCACGGAT+GGG | 0.558434 | 4.4:-45569312 | MS.gene08665:intron |
GCCTGAGACTGCAGTTTCCG+TGG | 0.567805 | 4.4:-45570389 | MS.gene08665:CDS |
TGTCCAGCCTGCAAAGGTGA+AGG | 0.582605 | 4.4:-45569397 | MS.gene08665:CDS |
ACACCAGGCTTCCAAAGAAG+TGG | 0.583227 | 4.4:-45569213 | MS.gene08665:intron |
GGTTCTCTGTACAAGAAGAG+TGG | 0.585572 | 4.4:+45570336 | None:intergenic |
ATGGCAACTCGATTCACGGA+TGG | 0.587327 | 4.4:-45569313 | MS.gene08665:CDS |
AAAAGTTGCTGCTACTGCCA+CGG | 0.603898 | 4.4:+45570372 | None:intergenic |
GGTATATGTCCAGCCTGCAA+AGG | 0.614856 | 4.4:-45569403 | MS.gene08665:CDS |
AAAGAATGCGAAGCTTGTGG+AGG | 0.643600 | 4.4:-45569430 | MS.gene08665:CDS |
GGCAGAAACTGTTCAACATG+TGG | 0.690362 | 4.4:-45569166 | MS.gene08665:CDS |
AGAAACTGTTCAACATGTGG+TGG | 0.691039 | 4.4:-45569163 | MS.gene08665:CDS |
CAAAACTTCTGAGTCCACAC+AGG | 0.698030 | 4.4:-45570314 | MS.gene08665:intron |
AGATGGGTTACTGACCTGTG+TGG | 0.759513 | 4.4:+45570300 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAAATTAAAAATTTTAG+AGG | + | chr4.4:45571721-45571740 | None:intergenic | 10.0% |
!!! | AATTAAAAATTTTAGAGGAA+AGG | + | chr4.4:45571716-45571735 | None:intergenic | 15.0% |
!!! | TAATTATGGTAACTTAATTT+TGG | + | chr4.4:45569471-45569490 | None:intergenic | 15.0% |
!!! | TCATTTTCTCAAATTATTAT+TGG | - | chr4.4:45570820-45570839 | MS.gene08665:intron | 15.0% |
!! | AAGAAAACTATCTAAAAACA+TGG | - | chr4.4:45571648-45571667 | MS.gene08665:intron | 20.0% |
!! | ATAGTTTCACATGAAAAATT+TGG | + | chr4.4:45571516-45571535 | None:intergenic | 20.0% |
!! | CAATTCAATCATATTATGAA+TGG | + | chr4.4:45571489-45571508 | None:intergenic | 20.0% |
!! | TACTTCATAATTTAAACTGA+GGG | + | chr4.4:45570378-45570397 | None:intergenic | 20.0% |
!! | TCTCAAATTATTAATGATGT+CGG | - | chr4.4:45571011-45571030 | MS.gene08665:intron | 20.0% |
!! | TTACTTCATAATTTAAACTG+AGG | + | chr4.4:45570379-45570398 | None:intergenic | 20.0% |
!! | TTGATGTTGTAAAATGAAAA+GGG | - | chr4.4:45570476-45570495 | MS.gene08665:intron | 20.0% |
!!! | AAAAGATTTTGTAGAATTTG+AGG | - | chr4.4:45570259-45570278 | MS.gene08665:intron | 20.0% |
!!! | AAGATTTTTATGTTCTTGTT+TGG | + | chr4.4:45571107-45571126 | None:intergenic | 20.0% |
!!! | ACTATGATGATTTTTAACAT+AGG | + | chr4.4:45569373-45569392 | None:intergenic | 20.0% |
!!! | GTTTTAGGTACTAAATAAAT+TGG | - | chr4.4:45569667-45569686 | MS.gene08665:intron | 20.0% |
!!! | TTTTTAACATAGGAATGAAT+TGG | + | chr4.4:45569363-45569382 | None:intergenic | 20.0% |
! | AAAACTAACTACTAAGCTTT+AGG | + | chr4.4:45569275-45569294 | None:intergenic | 25.0% |
! | ATGATTTATGACTAGACATT+TGG | + | chr4.4:45569872-45569891 | None:intergenic | 25.0% |
! | ATTGATACTAACAATAGAGA+TGG | + | chr4.4:45570700-45570719 | None:intergenic | 25.0% |
! | CTACAGTAAAACTTAATCAT+TGG | - | chr4.4:45570010-45570029 | MS.gene08665:intron | 25.0% |
! | CTTGATGTTGTAAAATGAAA+AGG | - | chr4.4:45570475-45570494 | MS.gene08665:intron | 25.0% |
! | GCTTCTTCAAAAAAAATCAT+TGG | - | chr4.4:45570146-45570165 | MS.gene08665:intron | 25.0% |
! | TAAATTGAAATCTCACTTTG+AGG | + | chr4.4:45569186-45569205 | None:intergenic | 25.0% |
! | TATGTTTATGACTAGACATT+TGG | + | chr4.4:45569920-45569939 | None:intergenic | 25.0% |
! | TTATCAAACATTTGAACTAG+AGG | + | chr4.4:45571140-45571159 | None:intergenic | 25.0% |
! | TTCAATGTAATCATTTGTGT+CGG | + | chr4.4:45570795-45570814 | None:intergenic | 25.0% |
! | TTGATACTAACAATAGAGAT+GGG | + | chr4.4:45570699-45570718 | None:intergenic | 25.0% |
!! | ACCATCTTAAAATTTGAGTT+TGG | + | chr4.4:45569791-45569810 | None:intergenic | 25.0% |
!! | CAATGATTAAGTTTTACTGT+AGG | + | chr4.4:45570012-45570031 | None:intergenic | 25.0% |
!! | CTTTGATGATAAGTTTCAAA+AGG | - | chr4.4:45570291-45570310 | MS.gene08665:intron | 25.0% |
!! | TCATTAATTTTCAGAACAGT+AGG | - | chr4.4:45569414-45569433 | MS.gene08665:CDS | 25.0% |
!!! | AAAATTTTAGAGGAAAGGAA+AGG | + | chr4.4:45571711-45571730 | None:intergenic | 25.0% |
!!! | ACTGTTCTGAAAATTAATGA+AGG | + | chr4.4:45569414-45569433 | None:intergenic | 25.0% |
!!! | ATGTGGTTTTTACTTTTTAC+TGG | - | chr4.4:45569307-45569326 | MS.gene08665:intron | 25.0% |
!!! | TAAAGCTTAGTAGTTAGTTT+TGG | - | chr4.4:45569274-45569293 | MS.gene08665:intron | 25.0% |
!!! | TCCAAACTCAAATTTTAAGA+TGG | - | chr4.4:45569787-45569806 | MS.gene08665:intron | 25.0% |
!!! | TGTGGTTTTTACTTTTTACT+GGG | - | chr4.4:45569308-45569327 | MS.gene08665:intron | 25.0% |
!!! | TTTCTTTTCAAGTTTGTGTT+TGG | - | chr4.4:45569582-45569601 | MS.gene08665:intron | 25.0% |
AAAATCATCATAGTCACGTT+AGG | - | chr4.4:45569379-45569398 | MS.gene08665:CDS | 30.0% | |
AATTAATGCTGCAGGAAAAT+AGG | - | chr4.4:45569486-45569505 | MS.gene08665:intron | 30.0% | |
ACAGACACGAATATAAATCA+TGG | + | chr4.4:45571053-45571072 | None:intergenic | 30.0% | |
GTCTTAATTTAACTCTTGTG+TGG | - | chr4.4:45569520-45569539 | MS.gene08665:intron | 30.0% | |
GTGTTTGGATTAAATGAGTT+TGG | - | chr4.4:45569597-45569616 | MS.gene08665:intron | 30.0% | |
TATGCTAATACTAGTAAAGC+TGG | + | chr4.4:45569969-45569988 | None:intergenic | 30.0% | |
TCTATCTCTAGCATAGAAAA+TGG | - | chr4.4:45570193-45570212 | MS.gene08665:intron | 30.0% | |
TTAGTACCTAAAACTACTGA+AGG | + | chr4.4:45569661-45569680 | None:intergenic | 30.0% | |
TTGGATTAAATGAGTTTGGT+AGG | - | chr4.4:45569601-45569620 | MS.gene08665:intron | 30.0% | |
! | AATTTTCAGAACAGTAGGAT+TGG | - | chr4.4:45569419-45569438 | MS.gene08665:CDS | 30.0% |
! | TACAATACAAGAAGCATGAT+TGG | + | chr4.4:45569216-45569235 | None:intergenic | 30.0% |
! | TGTTCTTGTTTGGAAAAGTA+AGG | + | chr4.4:45571097-45571116 | None:intergenic | 30.0% |
! | TTTTCCTGCAGCATTAATTA+TGG | + | chr4.4:45569485-45569504 | None:intergenic | 30.0% |
!! | CCTGAAAATGTGTTTTAAGT+GGG | - | chr4.4:45569759-45569778 | MS.gene08665:intron | 30.0% |
AACATAGGAATGAATTGGCA+CGG | + | chr4.4:45569358-45569377 | None:intergenic | 35.0% | |
ACTCTTGTGTGGTTTCTATA+TGG | - | chr4.4:45569531-45569550 | MS.gene08665:intron | 35.0% | |
ACTGAATTTCTACATACACC+AGG | - | chr4.4:45571752-45571771 | MS.gene08665:intron | 35.0% | |
ATCAGTGGATCATTTGCTTA+GGG | + | chr4.4:45570439-45570458 | None:intergenic | 35.0% | |
CAACTTCATGTGAGAATAGT+CGG | + | chr4.4:45570405-45570424 | None:intergenic | 35.0% | |
CAAGATAAGTATCCAATACC+AGG | + | chr4.4:45570765-45570784 | None:intergenic | 35.0% | |
GATCCACTGATAAGAACTTA+TGG | - | chr4.4:45570448-45570467 | MS.gene08665:intron | 35.0% | |
GTTACCATAATTAATGCTGC+AGG | - | chr4.4:45569478-45569497 | MS.gene08665:intron | 35.0% | |
TAGCCATAAGTTCTTATCAG+TGG | + | chr4.4:45570454-45570473 | None:intergenic | 35.0% | |
TATAATGTAACCATGTGTGC+TGG | + | chr4.4:45570980-45570999 | None:intergenic | 35.0% | |
TATCAGTGGATCATTTGCTT+AGG | + | chr4.4:45570440-45570459 | None:intergenic | 35.0% | |
TATTACCTGCATCTACATGT+TGG | - | chr4.4:45571228-45571247 | MS.gene08665:intron | 35.0% | |
TGAAGTCACAATTGCAAACA+AGG | - | chr4.4:45570542-45570561 | MS.gene08665:intron | 35.0% | |
TGTCTCTCTTCTACATAAGT+GGG | + | chr4.4:45570925-45570944 | None:intergenic | 35.0% | |
! | CCCACTTAAAACACATTTTC+AGG | + | chr4.4:45569762-45569781 | None:intergenic | 35.0% |
! | GTGATTCCTTCAGTAGTTTT+AGG | - | chr4.4:45569652-45569671 | MS.gene08665:intron | 35.0% |
! | TACAAGAAGCATGATTGGTT+AGG | + | chr4.4:45569211-45569230 | None:intergenic | 35.0% |
! | TCTTGTTTGGAAAAGTAAGG+CGG | + | chr4.4:45571094-45571113 | None:intergenic | 35.0% |
! | TTGGGAGTTGACTTAATTGT+TGG | - | chr4.4:45569729-45569748 | MS.gene08665:intron | 35.0% |
!! | GAAAATGTGTTTTAAGTGGG+AGG | - | chr4.4:45569762-45569781 | MS.gene08665:intron | 35.0% |
!! | GCCTGAAAATGTGTTTTAAG+TGG | - | chr4.4:45569758-45569777 | MS.gene08665:intron | 35.0% |
AAACATGGCAACTCGATTCA+CGG | - | chr4.4:45571663-45571682 | MS.gene08665:intron | 40.0% | |
AGAAACTGTTCAACATGTGG+TGG | - | chr4.4:45571817-45571836 | MS.gene08665:CDS | 40.0% | |
AGCACAAACTAGCGACATAT+AGG | - | chr4.4:45571327-45571346 | MS.gene08665:intron | 40.0% | |
ATCCACATAGACACAAACAC+AGG | + | chr4.4:45571262-45571281 | None:intergenic | 40.0% | |
CAAATGCGGTTTGTGTACTT+GGG | - | chr4.4:45569711-45569730 | MS.gene08665:intron | 40.0% | |
CTTGTGTGGTTTCTATATGG+TGG | - | chr4.4:45569534-45569553 | MS.gene08665:intron | 40.0% | |
GATTAGGTATGTCCTGGTAT+TGG | - | chr4.4:45570750-45570769 | MS.gene08665:intron | 40.0% | |
GTAAGCAGCGAAGTGATATT+GGG | + | chr4.4:45569164-45569183 | None:intergenic | 40.0% | |
GTGTCTCTCTTCTACATAAG+TGG | + | chr4.4:45570926-45570945 | None:intergenic | 40.0% | |
TACACAAACCGCATTTGAGA+TGG | + | chr4.4:45569708-45569727 | None:intergenic | 40.0% | |
TACTGCACAAAATGCTCTTC+TGG | - | chr4.4:45571793-45571812 | MS.gene08665:intron | 40.0% | |
TACTGGGCTGTTCTTTAGTT+TGG | - | chr4.4:45569324-45569343 | MS.gene08665:CDS | 40.0% | |
TATGAAGCACAGATACTCCT+CGG | - | chr4.4:45570728-45570747 | MS.gene08665:intron | 40.0% | |
TCAAATGCGGTTTGTGTACT+TGG | - | chr4.4:45569710-45569729 | MS.gene08665:intron | 40.0% | |
TGGAGTTCTTAAACCCACTT+GGG | - | chr4.4:45570030-45570049 | MS.gene08665:intron | 40.0% | |
TTCAAAGAATGCGAAGCTTG+TGG | - | chr4.4:45571547-45571566 | MS.gene08665:intron | 40.0% | |
TTGGAGTTCTTAAACCCACT+TGG | - | chr4.4:45570029-45570048 | MS.gene08665:intron | 40.0% | |
! | AGTAGCAGCAACTTTTGTTG+GGG | - | chr4.4:45570615-45570634 | MS.gene08665:intron | 40.0% |
! | CAGTAGCAGCAACTTTTGTT+GGG | - | chr4.4:45570614-45570633 | MS.gene08665:intron | 40.0% |
! | GTAATCATTTGTGTCGGTGT+CGG | + | chr4.4:45570789-45570808 | None:intergenic | 40.0% |
! | GTCAATTTAGGTGGCTAGTT+TGG | - | chr4.4:45570124-45570143 | MS.gene08665:intron | 40.0% |
!! | TGCTGTTTCCATCTCAAATG+CGG | - | chr4.4:45569697-45569716 | MS.gene08665:intron | 40.0% |
!! | TTCTGAAGAAAGTGCTGAGA+AGG | - | chr4.4:45571624-45571643 | MS.gene08665:intron | 40.0% |
AAAAGTTGCTGCTACTGCCA+CGG | + | chr4.4:45570611-45570630 | None:intergenic | 45.0% | |
AAAGAATGCGAAGCTTGTGG+AGG | - | chr4.4:45571550-45571569 | MS.gene08665:intron | 45.0% | |
ATGAAGCACAGTCTCAGACA+CGG | + | chr4.4:45570857-45570876 | None:intergenic | 45.0% | |
CAAAACTTCTGAGTCCACAC+AGG | - | chr4.4:45570666-45570685 | MS.gene08665:intron | 45.0% | |
CTAGCCACCTAAATTGACAC+CGG | + | chr4.4:45570122-45570141 | None:intergenic | 45.0% | |
GGCAGAAACTGTTCAACATG+TGG | - | chr4.4:45571814-45571833 | MS.gene08665:CDS | 45.0% | |
GGTAAGCAGCGAAGTGATAT+TGG | + | chr4.4:45569165-45569184 | None:intergenic | 45.0% | |
GGTTCTCTGTACAAGAAGAG+TGG | + | chr4.4:45570647-45570666 | None:intergenic | 45.0% | |
GTCCTGTGTTTGTGTCTATG+TGG | - | chr4.4:45571257-45571276 | MS.gene08665:intron | 45.0% | |
GTTCTTAAACCCACTTGGGT+TGG | - | chr4.4:45570034-45570053 | MS.gene08665:intron | 45.0% | |
TAGCCACCTAAATTGACACC+GGG | + | chr4.4:45570121-45570140 | None:intergenic | 45.0% | |
TGACACCAACATGTAGATGC+AGG | + | chr4.4:45571236-45571255 | None:intergenic | 45.0% | |
TGGTTCAACGGAACTTGGAT+AGG | + | chr4.4:45569821-45569840 | None:intergenic | 45.0% | |
! | CTGTGTGGACTCAGAAGTTT+TGG | + | chr4.4:45570668-45570687 | None:intergenic | 45.0% |
! | GATTCTCCCGGTGTCAATTT+AGG | - | chr4.4:45570112-45570131 | MS.gene08665:intron | 45.0% |
! | GCAGTAGCAGCAACTTTTGT+TGG | - | chr4.4:45570613-45570632 | MS.gene08665:intron | 45.0% |
! | TGTCTGAGACTGTGCTTCAT+AGG | - | chr4.4:45570857-45570876 | MS.gene08665:intron | 45.0% |
! | TGTTCAACATGTGGTGGAAG+TGG | - | chr4.4:45571823-45571842 | MS.gene08665:CDS | 45.0% |
!! | GTTTTGGTGTGCATGCAATG+TGG | - | chr4.4:45569290-45569309 | MS.gene08665:intron | 45.0% |
!! | TGGGCTGTTCTTTAGTTTGG+TGG | - | chr4.4:45569327-45569346 | MS.gene08665:CDS | 45.0% |
!! | TGTAACCATGTGTGCTGGTT+TGG | + | chr4.4:45570975-45570994 | None:intergenic | 45.0% |
ACACCAGGCTTCCAAAGAAG+TGG | - | chr4.4:45571767-45571786 | MS.gene08665:intron | 50.0% | |
ACAGGTGGTTCAACGGAACT+TGG | + | chr4.4:45569826-45569845 | None:intergenic | 50.0% | |
ACCAGGACATACCTAATCCG+AGG | + | chr4.4:45570748-45570767 | None:intergenic | 50.0% | |
ACCATCAGACCAACCCAAGT+GGG | + | chr4.4:45570046-45570065 | None:intergenic | 50.0% | |
ATCGAACCTGAGACCTTGAG+AGG | + | chr4.4:45570095-45570114 | None:intergenic | 50.0% | |
ATGGCAACTCGATTCACGGA+TGG | - | chr4.4:45571667-45571686 | MS.gene08665:intron | 50.0% | |
CACGTATCCTTCACCTTTGC+AGG | + | chr4.4:45571593-45571612 | None:intergenic | 50.0% | |
CTCGACAACAGGTGGTTCAA+CGG | + | chr4.4:45569833-45569852 | None:intergenic | 50.0% | |
CTGCTACACGTGACACAACA+CGG | - | chr4.4:45571382-45571401 | MS.gene08665:intron | 50.0% | |
GCACAGATACTCCTCGGATT+AGG | - | chr4.4:45570734-45570753 | MS.gene08665:intron | 50.0% | |
GGTATATGTCCAGCCTGCAA+AGG | - | chr4.4:45571577-45571596 | MS.gene08665:intron | 50.0% | |
GTGCAGTAGCTCCACTTCTT+TGG | + | chr4.4:45571781-45571800 | None:intergenic | 50.0% | |
GTTGTGTCACGTGTAGCAGT+TGG | + | chr4.4:45571381-45571400 | None:intergenic | 50.0% | |
TATCCTTCACCTTTGCAGGC+TGG | + | chr4.4:45571589-45571608 | None:intergenic | 50.0% | |
TGGCAACTCGATTCACGGAT+GGG | - | chr4.4:45571668-45571687 | MS.gene08665:intron | 50.0% | |
! | TCCTCGGATTAGGTATGTCC+TGG | - | chr4.4:45570744-45570763 | MS.gene08665:intron | 50.0% |
! | TCTCCCGGTGTCAATTTAGG+TGG | - | chr4.4:45570115-45570134 | MS.gene08665:intron | 50.0% |
!! | AGATGGGTTACTGACCTGTG+TGG | + | chr4.4:45570683-45570702 | None:intergenic | 50.0% |
!! | TGGTCTGATGGTGTTGGCTT+GGG | - | chr4.4:45570054-45570073 | MS.gene08665:intron | 50.0% |
!! | TTGGGTTGGTCTGATGGTGT+TGG | - | chr4.4:45570048-45570067 | MS.gene08665:intron | 50.0% |
!! | TTGGTCTGATGGTGTTGGCT+TGG | - | chr4.4:45570053-45570072 | MS.gene08665:intron | 50.0% |
CACCATCAGACCAACCCAAG+TGG | + | chr4.4:45570047-45570066 | None:intergenic | 55.0% | |
CACCTGTTGTCGAGTCACTC+GGG | - | chr4.4:45569839-45569858 | MS.gene08665:intron | 55.0% | |
CCACCTGTTGTCGAGTCACT+CGG | - | chr4.4:45569838-45569857 | MS.gene08665:intron | 55.0% | |
CTTGGAGTGTGCTCCTCTCA+AGG | - | chr4.4:45570079-45570098 | MS.gene08665:intron | 55.0% | |
GGTCTCAGGTTCGATTCTCC+CGG | - | chr4.4:45570100-45570119 | MS.gene08665:intron | 55.0% | |
GTGTGCCAAACCAGCACACA+TGG | - | chr4.4:45570967-45570986 | MS.gene08665:intron | 55.0% | |
TGCGAAGCTTGTGGAGGTTC+TGG | - | chr4.4:45571556-45571575 | MS.gene08665:intron | 55.0% | |
TGTCCAGCCTGCAAAGGTGA+AGG | - | chr4.4:45571583-45571602 | MS.gene08665:intron | 55.0% | |
TGTGCTCCTCTCAAGGTCTC+AGG | - | chr4.4:45570086-45570105 | MS.gene08665:intron | 55.0% | |
! | CTTGAGAGGAGCACACTCCA+AGG | + | chr4.4:45570081-45570100 | None:intergenic | 55.0% |
! | GCTCCACTTCTTTGGAAGCC+TGG | + | chr4.4:45571773-45571792 | None:intergenic | 55.0% |
!! | ACCCACTTGGGTTGGTCTGA+TGG | - | chr4.4:45570042-45570061 | MS.gene08665:intron | 55.0% |
!! | ATGGTGTTGGCTTGGGACCT+TGG | - | chr4.4:45570061-45570080 | MS.gene08665:intron | 55.0% |
CCGAGTGACTCGACAACAGG+TGG | + | chr4.4:45569841-45569860 | None:intergenic | 60.0% | |
GACCCGAGTGACTCGACAAC+AGG | + | chr4.4:45569844-45569863 | None:intergenic | 60.0% | |
GCCACGGAAACTGCAGTCTC+AGG | + | chr4.4:45570595-45570614 | None:intergenic | 60.0% | |
GCCTGAGACTGCAGTTTCCG+TGG | - | chr4.4:45570591-45570610 | MS.gene08665:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 45569141 | 45571861 | 45569141 | ID=MS.gene08665 |
chr4.4 | mRNA | 45569141 | 45571861 | 45569141 | ID=MS.gene08665.t1;Parent=MS.gene08665 |
chr4.4 | exon | 45571813 | 45571861 | 45571813 | ID=MS.gene08665.t1.exon1;Parent=MS.gene08665.t1 |
chr4.4 | CDS | 45571813 | 45571861 | 45571813 | ID=cds.MS.gene08665.t1;Parent=MS.gene08665.t1 |
chr4.4 | exon | 45570315 | 45570463 | 45570315 | ID=MS.gene08665.t1.exon2;Parent=MS.gene08665.t1 |
chr4.4 | CDS | 45570315 | 45570463 | 45570315 | ID=cds.MS.gene08665.t1;Parent=MS.gene08665.t1 |
chr4.4 | exon | 45569313 | 45569461 | 45569313 | ID=MS.gene08665.t1.exon3;Parent=MS.gene08665.t1 |
chr4.4 | CDS | 45569313 | 45569461 | 45569313 | ID=cds.MS.gene08665.t1;Parent=MS.gene08665.t1 |
chr4.4 | exon | 45569141 | 45569228 | 45569141 | ID=MS.gene08665.t1.exon4;Parent=MS.gene08665.t1 |
chr4.4 | CDS | 45569141 | 45569228 | 45569141 | ID=cds.MS.gene08665.t1;Parent=MS.gene08665.t1 |
Gene Sequence |
Protein sequence |