Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35391.t1 | XP_003596783.1 | 94.9 | 414 | 21 | 0 | 28 | 441 | 29 | 442 | 3.40E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35391.t1 | Q93ZB9 | 58.3 | 446 | 179 | 2 | 1 | 441 | 1 | 444 | 2.4e-144 | 513.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35391.t1 | G7IRD9 | 94.9 | 414 | 21 | 0 | 28 | 441 | 29 | 442 | 2.4e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene35391 | 0.820429 | 6.89E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene35391 | 0.834061 | 3.73E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene35391 | 0.816079 | 6.65E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene35391 | 0.848497 | 5.90E-60 | -1.69E-46 |
| MS.gene049297 | MS.gene35391 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene35391 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene35391 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene049389 | MS.gene35391 | 0.812126 | 4.96E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene35391 | 0.824267 | 8.85E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene35391 | 0.890727 | 7.58E-74 | -1.69E-46 |
| MS.gene049910 | MS.gene35391 | 0.824404 | 8.22E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene35391 | 0.802176 | 6.35E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene35391 | 0.825787 | 3.87E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene35391 | 0.854605 | 1.10E-61 | -1.69E-46 |
| MS.gene050226 | MS.gene35391 | 0.807438 | 5.05E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene35391 | 0.885722 | 6.36E-72 | -1.69E-46 |
| MS.gene050330 | MS.gene35391 | -0.803859 | 2.85E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene35391 | 0.830131 | 3.49E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene35391 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene35391 | 0.814238 | 1.71E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene35391 | -0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene35391 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene35391 | 0.819383 | 1.20E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene35391 | 0.822684 | 2.08E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene35391 | 0.838112 | 3.49E-57 | -1.69E-46 |
| MS.gene05119 | MS.gene35391 | -0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene35391 | 0.847204 | 1.34E-59 | -1.69E-46 |
| MS.gene051662 | MS.gene35391 | 0.829164 | 6.00E-55 | -1.69E-46 |
| MS.gene051663 | MS.gene35391 | 0.855726 | 5.20E-62 | -1.69E-46 |
| MS.gene051860 | MS.gene35391 | 0.865329 | 6.39E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene35391 | 0.812623 | 3.86E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene35391 | 0.813678 | 2.27E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene35391 | 0.854036 | 1.61E-61 | -1.69E-46 |
| MS.gene052178 | MS.gene35391 | 0.885819 | 5.85E-72 | -1.69E-46 |
| MS.gene052188 | MS.gene35391 | 0.831127 | 1.99E-55 | -1.69E-46 |
| MS.gene052207 | MS.gene35391 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene35391 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene052287 | MS.gene35391 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene35391 | 0.827137 | 1.85E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene35391 | 0.828512 | 8.63E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene35391 | 0.871387 | 7.10E-67 | -1.69E-46 |
| MS.gene052485 | MS.gene35391 | 0.818919 | 1.52E-52 | -1.69E-46 |
| MS.gene053073 | MS.gene35391 | 0.819756 | 9.83E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene35391 | 0.817155 | 3.82E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene35391 | 0.830846 | 2.33E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene35391 | 0.847437 | 1.16E-59 | -1.69E-46 |
| MS.gene053836 | MS.gene35391 | 0.893191 | 7.91E-75 | -1.69E-46 |
| MS.gene053928 | MS.gene35391 | 0.836735 | 7.86E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene35391 | 0.839133 | 1.90E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene35391 | 0.849746 | 2.65E-60 | -1.69E-46 |
| MS.gene054012 | MS.gene35391 | 0.845757 | 3.33E-59 | -1.69E-46 |
| MS.gene054013 | MS.gene35391 | 0.846682 | 1.86E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene35391 | 0.81908 | 1.40E-52 | -1.69E-46 |
| MS.gene054184 | MS.gene35391 | 0.834938 | 2.24E-56 | -1.69E-46 |
| MS.gene054185 | MS.gene35391 | 0.834828 | 2.39E-56 | -1.69E-46 |
| MS.gene054214 | MS.gene35391 | 0.826445 | 2.70E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene35391 | 0.819591 | 1.07E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene35391 | 0.854678 | 1.05E-61 | -1.69E-46 |
| MS.gene05455 | MS.gene35391 | 0.837653 | 4.58E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene35391 | 0.81103 | 8.58E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene35391 | 0.811822 | 5.78E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene35391 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene055133 | MS.gene35391 | 0.824856 | 6.44E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene35391 | 0.878884 | 1.96E-69 | -1.69E-46 |
| MS.gene055303 | MS.gene35391 | 0.800193 | 1.62E-48 | -1.69E-46 |
| MS.gene055390 | MS.gene35391 | 0.862727 | 4.13E-64 | -1.69E-46 |
| MS.gene055422 | MS.gene35391 | 0.870829 | 1.09E-66 | -1.69E-46 |
| MS.gene055428 | MS.gene35391 | 0.891006 | 5.89E-74 | -1.69E-46 |
| MS.gene05553 | MS.gene35391 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene35391 | 0.861805 | 7.93E-64 | -1.69E-46 |
| MS.gene055666 | MS.gene35391 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene055712 | MS.gene35391 | 0.824635 | 7.26E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene35391 | 0.862217 | 5.93E-64 | -1.69E-46 |
| MS.gene056314 | MS.gene35391 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene35391 | 0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene35391 | 0.824274 | 8.82E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene35391 | 0.855962 | 4.44E-62 | -1.69E-46 |
| MS.gene056875 | MS.gene35391 | 0.821531 | 3.84E-53 | -1.69E-46 |
| MS.gene056902 | MS.gene35391 | 0.814112 | 1.82E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene35391 | 0.824896 | 6.30E-54 | -1.69E-46 |
| MS.gene056933 | MS.gene35391 | 0.82913 | 6.12E-55 | -1.69E-46 |
| MS.gene056935 | MS.gene35391 | 0.812091 | 5.05E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene35391 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene35391 | 0.850288 | 1.87E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene35391 | 0.846946 | 1.58E-59 | -1.69E-46 |
| MS.gene057245 | MS.gene35391 | 0.813232 | 2.84E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene35391 | 0.800706 | 1.27E-48 | -1.69E-46 |
| MS.gene05733 | MS.gene35391 | 0.83444 | 2.99E-56 | -1.69E-46 |
| MS.gene057439 | MS.gene35391 | 0.825073 | 5.72E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene35391 | 0.820342 | 7.21E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene35391 | 0.811961 | 5.39E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene35391 | 0.833121 | 6.40E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene35391 | 0.827375 | 1.62E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene35391 | 0.841352 | 5.01E-58 | -1.69E-46 |
| MS.gene057794 | MS.gene35391 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene35391 | 0.817723 | 2.84E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene35391 | 0.875695 | 2.52E-68 | -1.69E-46 |
| MS.gene05811 | MS.gene35391 | 0.894409 | 2.53E-75 | -1.69E-46 |
| MS.gene058142 | MS.gene35391 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene058236 | MS.gene35391 | 0.805078 | 1.59E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene35391 | 0.810797 | 9.64E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene35391 | 0.817989 | 2.48E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene35391 | 0.827231 | 1.75E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene35391 | 0.83039 | 3.02E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene35391 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene35391 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene35391 | 0.802425 | 5.65E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene35391 | 0.878185 | 3.44E-69 | -1.69E-46 |
| MS.gene059228 | MS.gene35391 | 0.80005 | 1.73E-48 | -1.69E-46 |
| MS.gene059285 | MS.gene35391 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene059294 | MS.gene35391 | 0.834897 | 2.30E-56 | -1.69E-46 |
| MS.gene059421 | MS.gene35391 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene35391 | 0.870775 | 1.13E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene35391 | 0.851642 | 7.77E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene35391 | 0.825393 | 4.80E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene35391 | 0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene35391 | 0.821126 | 4.77E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene35391 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene059708 | MS.gene35391 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene35391 | 0.870795 | 1.11E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene35391 | 0.893179 | 8.00E-75 | -1.69E-46 |
| MS.gene059899 | MS.gene35391 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene35391 | 0.854861 | 9.28E-62 | -1.69E-46 |
| MS.gene060005 | MS.gene35391 | 0.837411 | 5.28E-57 | -1.69E-46 |
| MS.gene06037 | MS.gene35391 | 0.87339 | 1.53E-67 | -1.69E-46 |
| MS.gene060407 | MS.gene35391 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene35391 | 0.85397 | 1.68E-61 | -1.69E-46 |
| MS.gene060559 | MS.gene35391 | 0.835236 | 1.89E-56 | -1.69E-46 |
| MS.gene060986 | MS.gene35391 | 0.827125 | 1.86E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene35391 | 0.889535 | 2.22E-73 | -1.69E-46 |
| MS.gene061051 | MS.gene35391 | -0.827795 | 1.28E-54 | -1.69E-46 |
| MS.gene061071 | MS.gene35391 | 0.810862 | 9.33E-51 | -1.69E-46 |
| MS.gene061112 | MS.gene35391 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene35391 | 0.811514 | 6.74E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35391.t1 | MTR_2g086090 | 94.928 | 414 | 21 | 0 | 28 | 441 | 29 | 442 | 0.0 | 816 |
| MS.gene35391.t1 | MTR_4g053785 | 72.048 | 415 | 115 | 1 | 28 | 441 | 27 | 441 | 0.0 | 643 |
| MS.gene35391.t1 | MTR_2g086070 | 69.157 | 415 | 127 | 1 | 28 | 441 | 27 | 441 | 0.0 | 617 |
| MS.gene35391.t1 | MTR_4g053880 | 67.952 | 415 | 132 | 1 | 28 | 441 | 28 | 442 | 0.0 | 611 |
| MS.gene35391.t1 | MTR_4g054820 | 46.190 | 420 | 220 | 2 | 28 | 441 | 24 | 443 | 6.87e-144 | 420 |
| MS.gene35391.t1 | MTR_4g053900 | 47.255 | 419 | 216 | 4 | 28 | 441 | 27 | 445 | 1.22e-139 | 409 |
| MS.gene35391.t1 | MTR_5g072540 | 45.346 | 419 | 222 | 4 | 28 | 441 | 27 | 443 | 4.79e-136 | 400 |
| MS.gene35391.t1 | MTR_5g045330 | 44.737 | 418 | 211 | 4 | 28 | 441 | 27 | 428 | 2.30e-125 | 372 |
| MS.gene35391.t1 | MTR_1g054635 | 39.437 | 426 | 238 | 7 | 28 | 440 | 141 | 559 | 2.77e-97 | 304 |
| MS.gene35391.t1 | MTR_4g054220 | 48.263 | 259 | 131 | 1 | 28 | 283 | 24 | 282 | 4.01e-87 | 268 |
| MS.gene35391.t1 | MTR_6g034620 | 45.455 | 308 | 132 | 5 | 138 | 441 | 4 | 279 | 2.95e-85 | 264 |
| MS.gene35391.t1 | MTR_5g072550 | 44.000 | 200 | 110 | 2 | 244 | 441 | 1 | 200 | 3.13e-56 | 186 |
| MS.gene35391.t1 | MTR_4g054240 | 42.500 | 160 | 91 | 1 | 283 | 441 | 20 | 179 | 6.44e-34 | 127 |
| MS.gene35391.t1 | MTR_6g039280 | 40.201 | 199 | 87 | 2 | 244 | 441 | 1 | 168 | 1.42e-33 | 125 |
| MS.gene35391.t1 | MTR_6g034660 | 44.660 | 103 | 57 | 0 | 28 | 130 | 27 | 129 | 2.54e-23 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35391.t1 | AT4G33790 | 58.296 | 446 | 179 | 2 | 1 | 441 | 1 | 444 | 0.0 | 535 |
| MS.gene35391.t1 | AT3G44540 | 52.404 | 416 | 196 | 2 | 28 | 441 | 26 | 441 | 1.62e-161 | 465 |
| MS.gene35391.t1 | AT5G22500 | 52.644 | 416 | 193 | 3 | 28 | 441 | 26 | 439 | 9.47e-161 | 463 |
| MS.gene35391.t1 | AT3G44550 | 50.957 | 418 | 200 | 4 | 28 | 441 | 26 | 442 | 3.91e-155 | 449 |
| MS.gene35391.t1 | AT4G33790 | 60.976 | 328 | 128 | 0 | 114 | 441 | 4 | 331 | 5.58e-152 | 436 |
| MS.gene35391.t1 | AT5G22500 | 53.083 | 373 | 171 | 3 | 28 | 398 | 26 | 396 | 1.09e-146 | 424 |
| MS.gene35391.t1 | AT3G44560 | 49.282 | 418 | 207 | 4 | 28 | 441 | 26 | 442 | 1.55e-141 | 412 |
| MS.gene35391.t1 | AT3G44560 | 49.043 | 418 | 208 | 4 | 28 | 441 | 26 | 442 | 4.95e-140 | 410 |
| MS.gene35391.t1 | AT3G44560 | 49.072 | 377 | 187 | 4 | 28 | 400 | 26 | 401 | 2.83e-128 | 377 |
| MS.gene35391.t1 | AT3G44550 | 50.599 | 334 | 161 | 3 | 111 | 441 | 1 | 333 | 1.93e-122 | 361 |
| MS.gene35391.t1 | AT3G44540 | 55.245 | 286 | 127 | 1 | 28 | 312 | 26 | 311 | 3.87e-116 | 342 |
| MS.gene35391.t1 | AT3G44540 | 55.245 | 286 | 127 | 1 | 28 | 312 | 26 | 311 | 3.87e-116 | 342 |
| MS.gene35391.t1 | AT5G22420 | 49.085 | 328 | 162 | 4 | 116 | 441 | 6 | 330 | 5.52e-114 | 339 |
| MS.gene35391.t1 | AT5G22420 | 47.937 | 315 | 159 | 4 | 129 | 441 | 3 | 314 | 4.12e-106 | 318 |
| MS.gene35391.t1 | AT5G22420 | 47.937 | 315 | 159 | 4 | 129 | 441 | 3 | 314 | 4.12e-106 | 318 |
| MS.gene35391.t1 | AT5G22420 | 47.785 | 316 | 160 | 4 | 128 | 441 | 54 | 366 | 4.81e-106 | 320 |
| MS.gene35391.t1 | AT3G11980 | 40.233 | 430 | 230 | 9 | 28 | 440 | 145 | 564 | 2.78e-98 | 307 |
| MS.gene35391.t1 | AT5G22420 | 46.595 | 279 | 144 | 4 | 165 | 441 | 4 | 279 | 1.46e-88 | 272 |
| MS.gene35391.t1 | AT3G56700 | 37.530 | 421 | 231 | 9 | 28 | 440 | 98 | 494 | 6.21e-84 | 268 |
| MS.gene35391.t1 | AT5G22420 | 46.183 | 262 | 136 | 4 | 182 | 441 | 2 | 260 | 3.13e-81 | 253 |
| MS.gene35391.t1 | AT5G22420 | 46.183 | 262 | 136 | 4 | 182 | 441 | 2 | 260 | 3.13e-81 | 253 |
| MS.gene35391.t1 | AT3G56700 | 35.154 | 421 | 220 | 10 | 28 | 440 | 98 | 473 | 1.57e-71 | 235 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCTACCTTCTTCCATTAA+AGG | 0.131189 | 2.1:+15928099 | MS.gene35391:CDS |
| AACAGATGTTATTATTAATT+TGG | 0.143261 | 2.1:+15914066 | MS.gene35391:CDS |
| ATGCATAGTCATGAAGATTT+TGG | 0.204782 | 2.1:-15927967 | None:intergenic |
| GGAAATATCTTCCCTTAAAA+TGG | 0.231119 | 2.1:-15914038 | None:intergenic |
| GACAGCTTAGCTGTTGCTTA+TGG | 0.246400 | 2.1:+15926913 | MS.gene35391:CDS |
| CCTTTCCCTGGTTGGGTTGA+GGG | 0.279567 | 2.1:+15923730 | MS.gene35391:CDS |
| ATATAAATAAGAACCTTTAA+TGG | 0.288279 | 2.1:-15928112 | None:intergenic |
| TATGCTGGTGGTGGAGGTGG+TGG | 0.297269 | 2.1:+15907732 | MS.gene35391:CDS |
| CTCTTTGGCAATTCATTAAA+CGG | 0.323564 | 2.1:+15914916 | MS.gene35391:CDS |
| TAATGAATTGCCAAAGAGAT+AGG | 0.327688 | 2.1:-15914911 | None:intergenic |
| CATTTATTAGGGACTCAAAT+TGG | 0.334480 | 2.1:+15928496 | MS.gene35391:intron |
| CTGGTTGGGTTGAGGGTCTC+AGG | 0.357068 | 2.1:+15923737 | MS.gene35391:CDS |
| AGCGAATGAATATGTATCTT+TGG | 0.357459 | 2.1:-15928081 | None:intergenic |
| ACCTTTCCCTGGTTGGGTTG+AGG | 0.362668 | 2.1:+15923729 | MS.gene35391:CDS |
| CCTTATGCTGGTGGTGGAGG+TGG | 0.365977 | 2.1:+15907729 | MS.gene35391:CDS |
| ACAGCTTAGCTGTTGCTTAT+GGG | 0.368385 | 2.1:+15926914 | MS.gene35391:CDS |
| CAGACCTTATTTATTCTTCA+AGG | 0.368451 | 2.1:+15928607 | MS.gene35391:CDS |
| CTAGAGAGTCCCTATCTCTT+TGG | 0.373455 | 2.1:+15914901 | MS.gene35391:CDS |
| GAACTTATCTTGAGCTCAAC+AGG | 0.382271 | 2.1:+15928549 | MS.gene35391:CDS |
| AAGAGAACCTTTCCCTGGTT+GGG | 0.391356 | 2.1:+15923723 | MS.gene35391:CDS |
| CAAAGATGGAACGGTTGTTA+AGG | 0.393284 | 2.1:+15928021 | MS.gene35391:CDS |
| TGTTAAGGTTGGCAAAATTA+CGG | 0.394771 | 2.1:+15928036 | MS.gene35391:CDS |
| TTTGGATGACTTGGGTTTGA+AGG | 0.398771 | 2.1:+15914012 | MS.gene35391:CDS |
| GCAATTGAAAGGAAACTTAT+CGG | 0.399687 | 2.1:+15923663 | MS.gene35391:CDS |
| GATAAGTTCCCTGAAAATAC+TGG | 0.402816 | 2.1:-15928535 | None:intergenic |
| ATGCCCTTGAAGAATAAATA+AGG | 0.404261 | 2.1:-15928611 | None:intergenic |
| CACTTTGACTTCACGTTCCG+TGG | 0.406439 | 2.1:-15915013 | None:intergenic |
| AATTTCAGGGCCAATGTGTA+TGG | 0.408387 | 2.1:+15923589 | MS.gene35391:intron |
| GCATTGGATCTAAATACATT+TGG | 0.410639 | 2.1:+15914665 | MS.gene35391:CDS |
| TGGCCTTATGCTGGTGGTGG+AGG | 0.414068 | 2.1:+15907726 | MS.gene35391:CDS |
| TTTGTAAACACGTATGTGTT+TGG | 0.431767 | 2.1:-15923616 | None:intergenic |
| TGTAATACCTAGGTCCTTCA+TGG | 0.435831 | 2.1:-15915037 | None:intergenic |
| AGATATCACTTTGGATGACT+TGG | 0.447134 | 2.1:+15914003 | MS.gene35391:CDS |
| GTGCTTGTTCATGTATCAAC+AGG | 0.447760 | 2.1:+15914734 | MS.gene35391:CDS |
| AATATTTCAAAGCAAAACCT+TGG | 0.454010 | 2.1:+15927993 | MS.gene35391:CDS |
| CCACCTCCACCACCAGCATA+AGG | 0.455437 | 2.1:-15907729 | None:intergenic |
| ATGCTGGTGGTGGAGGTGGT+GGG | 0.474560 | 2.1:+15907733 | MS.gene35391:CDS |
| GATGGAACGGTTGTTAAGGT+TGG | 0.489151 | 2.1:+15928025 | MS.gene35391:CDS |
| GAAAAGTTGACTGTGGTGCC+TGG | 0.493185 | 2.1:+15913980 | MS.gene35391:CDS |
| CTGAGACCCTCAACCCAACC+AGG | 0.496077 | 2.1:-15923736 | None:intergenic |
| TAATTTCAGCTTATGTATGC+GGG | 0.497684 | 2.1:+15914860 | MS.gene35391:intron |
| TAAGAGAACCTTTCCCTGGT+TGG | 0.498365 | 2.1:+15923722 | MS.gene35391:CDS |
| AATAATAACATCTGTTTGAG+AGG | 0.499739 | 2.1:-15914059 | None:intergenic |
| AATTCATTAAACGGTGTGGC+TGG | 0.501593 | 2.1:+15914925 | MS.gene35391:CDS |
| TACGTGTTTACAAAGGCACT+TGG | 0.506284 | 2.1:+15923625 | MS.gene35391:CDS |
| CCACCAACCGCATCACAACT+TGG | 0.506880 | 2.1:-15928577 | None:intergenic |
| TAAGAACCTTTAATGGAAGA+AGG | 0.508072 | 2.1:-15928105 | None:intergenic |
| AGACCTTATTTATTCTTCAA+GGG | 0.517769 | 2.1:+15928608 | MS.gene35391:CDS |
| ATGCAAATCAACCTAGTGAT+GGG | 0.518277 | 2.1:+15927903 | MS.gene35391:CDS |
| GTTCCATCTTTGTTTATCCA+AGG | 0.518992 | 2.1:-15928010 | None:intergenic |
| GAAACATAAATGGCTGAAGA+AGG | 0.523061 | 2.1:+15907190 | None:intergenic |
| TTAGCTGTTGCTTATGGGAA+AGG | 0.524036 | 2.1:+15926919 | MS.gene35391:CDS |
| AATGTACTTGTGACAATGGC+AGG | 0.524668 | 2.1:-15923700 | None:intergenic |
| ACGTGTTTACAAAGGCACTT+GGG | 0.525068 | 2.1:+15923626 | MS.gene35391:CDS |
| GATATCACTTTGGATGACTT+GGG | 0.525651 | 2.1:+15914004 | MS.gene35391:CDS |
| CAATGCAATGTTAGTAGCTA+TGG | 0.533514 | 2.1:+15927874 | MS.gene35391:CDS |
| AATGAATTGCCAAAGAGATA+GGG | 0.534867 | 2.1:-15914910 | None:intergenic |
| AAACCTTGGATAAACAAAGA+TGG | 0.538545 | 2.1:+15928007 | MS.gene35391:CDS |
| TTAGGTGAGCTACAAGAGAA+AGG | 0.539799 | 2.1:+15914988 | MS.gene35391:CDS |
| GCATTGACCACCATGTCAGC+TGG | 0.546348 | 2.1:-15927857 | None:intergenic |
| CCAAGTTGTGATGCGGTTGG+TGG | 0.550260 | 2.1:+15928577 | MS.gene35391:CDS |
| AGCAACAGCTAAGCTGTCAA+TGG | 0.551045 | 2.1:-15926908 | None:intergenic |
| ACATTAAGAGAACCTTTCCC+TGG | 0.552357 | 2.1:+15923718 | MS.gene35391:CDS |
| TCATCCAAAGTGATATCTCC+AGG | 0.554276 | 2.1:-15913998 | None:intergenic |
| CATGCAAATCAACCTAGTGA+TGG | 0.558246 | 2.1:+15927902 | MS.gene35391:CDS |
| TCTTTGGAAGCTTGCCATGT+TGG | 0.559132 | 2.1:-15928065 | None:intergenic |
| TGAAGTCAAAGTGGCCATGA+AGG | 0.560246 | 2.1:+15915023 | MS.gene35391:CDS |
| TGAAGGACCTAGGTATTACA+AGG | 0.560398 | 2.1:+15915040 | MS.gene35391:CDS |
| CAGTGGCCTTATGCTGGTGG+TGG | 0.562138 | 2.1:+15907723 | MS.gene35391:CDS |
| TTAATTTCAGCTTATGTATG+CGG | 0.563809 | 2.1:+15914859 | MS.gene35391:intron |
| GAAGAGTGTTGATGAGAGCT+TGG | 0.564589 | 2.1:+15907693 | MS.gene35391:CDS |
| AGCTAGTCGCTTGCAAAATG+AGG | 0.569281 | 2.1:+15910921 | MS.gene35391:CDS |
| TCAGGGCCAATGTGTATGGA+TGG | 0.570871 | 2.1:+15923593 | MS.gene35391:intron |
| GGCACTTGGGGAGATGCTTG+TGG | 0.574855 | 2.1:+15923639 | MS.gene35391:CDS |
| CAGAAACAGTGGCCTTATGC+TGG | 0.578635 | 2.1:+15907717 | MS.gene35391:CDS |
| TAAGCAGATACCAGCTGACA+TGG | 0.580647 | 2.1:+15927847 | MS.gene35391:intron |
| CAACTACTAACTTTGATGAA+AGG | 0.583532 | 2.1:+15914092 | MS.gene35391:CDS |
| GTACAGGTATGATATAGCAT+TGG | 0.584357 | 2.1:+15914649 | MS.gene35391:intron |
| ATGCTTGTGGAGCAATTGAA+AGG | 0.587967 | 2.1:+15923652 | MS.gene35391:CDS |
| TTTCAATGGGTTTCTGACAG+AGG | 0.588834 | 2.1:-15927942 | None:intergenic |
| TCTTAATGTACTTGTGACAA+TGG | 0.590191 | 2.1:-15923704 | None:intergenic |
| CCCTCAACCCAACCAGGGAA+AGG | 0.593436 | 2.1:-15923730 | None:intergenic |
| TCACAAACCTTGTAATACCT+AGG | 0.593564 | 2.1:-15915047 | None:intergenic |
| TATGTATGCGGGGAAAGAAG+TGG | 0.596022 | 2.1:+15914871 | MS.gene35391:CDS |
| TGCAATGTTAGTAGCTATGG+TGG | 0.599951 | 2.1:+15927877 | MS.gene35391:CDS |
| TGGCAATTCATTAAACGGTG+TGG | 0.607167 | 2.1:+15914921 | MS.gene35391:CDS |
| ACATGATATACCCCATCACT+AGG | 0.613395 | 2.1:-15927914 | None:intergenic |
| AGTGATGGGGTATATCATGT+AGG | 0.616657 | 2.1:+15927917 | MS.gene35391:CDS |
| AGCTGCAGATTTGTCATCGG+AGG | 0.622672 | 2.1:-15910902 | None:intergenic |
| GGTGCCTGGAGATATCACTT+TGG | 0.626088 | 2.1:+15913994 | MS.gene35391:CDS |
| ACTAGCTGCAGATTTGTCAT+CGG | 0.626995 | 2.1:-15910905 | None:intergenic |
| TTGGATAAACAAAGATGGAA+CGG | 0.628270 | 2.1:+15928012 | MS.gene35391:CDS |
| CGTGTTTACAAAGGCACTTG+GGG | 0.632335 | 2.1:+15923627 | MS.gene35391:CDS |
| AAAGTGGCCATGAAGGACCT+AGG | 0.638608 | 2.1:+15915030 | MS.gene35391:CDS |
| AATTTCAGCTTATGTATGCG+GGG | 0.647650 | 2.1:+15914861 | MS.gene35391:intron |
| GTTTGGCCATCCATACACAT+TGG | 0.647933 | 2.1:-15923599 | None:intergenic |
| CACGGAACGTGAAGTCAAAG+TGG | 0.648254 | 2.1:+15915014 | MS.gene35391:CDS |
| TGCAAATCAACCTAGTGATG+GGG | 0.650670 | 2.1:+15927904 | MS.gene35391:CDS |
| AAACACATACGTGTTTACAA+AGG | 0.652825 | 2.1:+15923618 | MS.gene35391:CDS |
| TATTTCGGAAAAGTTGACTG+TGG | 0.654879 | 2.1:+15913973 | MS.gene35391:CDS |
| AATTACGGTATTAACCAACA+TGG | 0.665282 | 2.1:+15928051 | MS.gene35391:CDS |
| TATCAACGGTGTTGTTGATG+CGG | 0.670674 | 2.1:+15926966 | MS.gene35391:CDS |
| GAGAGCTTGGACAGAAACAG+TGG | 0.673783 | 2.1:+15907706 | MS.gene35391:CDS |
| GGAAGATCCAAGTTGTGATG+CGG | 0.673834 | 2.1:+15928570 | MS.gene35391:CDS |
| GATCCAAGTTGTGATGCGGT+TGG | 0.680098 | 2.1:+15928574 | MS.gene35391:CDS |
| TGAGACCCTCAACCCAACCA+GGG | 0.682409 | 2.1:-15923735 | None:intergenic |
| GCTACAAGAGAAAGGAGCCA+CGG | 0.693334 | 2.1:+15914996 | MS.gene35391:CDS |
| GCAGATACCAGCTGACATGG+TGG | 0.699544 | 2.1:+15927850 | MS.gene35391:intron |
| AAACAGTGGCCTTATGCTGG+TGG | 0.715901 | 2.1:+15907720 | MS.gene35391:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 15907199 | 15928637 | 15907199 | ID=MS.gene35391 |
| chr2.1 | mRNA | 15907199 | 15928637 | 15907199 | ID=MS.gene35391.t1;Parent=MS.gene35391 |
| chr2.1 | exon | 15907199 | 15907211 | 15907199 | ID=MS.gene35391.t1.exon1;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15907199 | 15907211 | 15907199 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15907686 | 15907754 | 15907686 | ID=MS.gene35391.t1.exon2;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15907686 | 15907754 | 15907686 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15910839 | 15910942 | 15910839 | ID=MS.gene35391.t1.exon3;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15910839 | 15910942 | 15910839 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15913911 | 15914113 | 15913911 | ID=MS.gene35391.t1.exon4;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15913911 | 15914113 | 15913911 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15914655 | 15914755 | 15914655 | ID=MS.gene35391.t1.exon5;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15914655 | 15914755 | 15914655 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15914869 | 15915061 | 15914869 | ID=MS.gene35391.t1.exon6;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15914869 | 15915061 | 15914869 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15923597 | 15923758 | 15923597 | ID=MS.gene35391.t1.exon7;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15923597 | 15923758 | 15923597 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15926906 | 15926987 | 15926906 | ID=MS.gene35391.t1.exon8;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15926906 | 15926987 | 15926906 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15927854 | 15928120 | 15927854 | ID=MS.gene35391.t1.exon9;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15927854 | 15928120 | 15927854 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| chr2.1 | exon | 15928506 | 15928637 | 15928506 | ID=MS.gene35391.t1.exon10;Parent=MS.gene35391.t1 |
| chr2.1 | CDS | 15928506 | 15928637 | 15928506 | ID=cds.MS.gene35391.t1;Parent=MS.gene35391.t1 |
| Gene Sequence |
| Protein sequence |
