Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065072.t1 | RHN82494.1 | 96.1 | 77 | 3 | 0 | 1 | 77 | 57 | 133 | 2.80E-29 | 137.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065072.t1 | G7ZYS9 | 96.1 | 77 | 3 | 0 | 1 | 77 | 1 | 77 | 2.0e-29 | 137.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene065072 | -0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene049142 | MS.gene065072 | 0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene065072 | 0.8156 | 8.51E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene065072 | 0.809062 | 2.28E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene065072 | 0.806728 | 7.14E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene065072 | 0.803382 | 3.58E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene065072 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene049786 | MS.gene065072 | 0.807171 | 5.76E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene065072 | 0.817121 | 3.89E-52 | -1.69E-46 |
| MS.gene050253 | MS.gene065072 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene065072 | 0.811883 | 5.60E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene065072 | 0.800293 | 1.54E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene065072 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene065072 | 0.841692 | 4.07E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene065072 | 0.820011 | 8.59E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene065072 | 0.830275 | 3.22E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene065072 | 0.843168 | 1.65E-58 | -1.69E-46 |
| MS.gene051063 | MS.gene065072 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene065072 | 0.819825 | 9.47E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene065072 | 0.820728 | 5.88E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene065072 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene065072 | 0.843461 | 1.38E-58 | -1.69E-46 |
| MS.gene051700 | MS.gene065072 | 0.820052 | 8.41E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene065072 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene065072 | 0.820129 | 8.08E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene065072 | 0.843729 | 1.17E-58 | -1.69E-46 |
| MS.gene051902 | MS.gene065072 | 0.818256 | 2.16E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene065072 | 0.841187 | 5.53E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene065072 | 0.878392 | 2.91E-69 | -1.69E-46 |
| MS.gene052072 | MS.gene065072 | 0.826948 | 2.05E-54 | -1.69E-46 |
| MS.gene052296 | MS.gene065072 | 0.815233 | 1.03E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene065072 | 0.810023 | 1.42E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene065072 | 0.808893 | 2.48E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene065072 | 0.855063 | 8.11E-62 | -1.69E-46 |
| MS.gene053226 | MS.gene065072 | 0.805638 | 1.21E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene065072 | 0.838053 | 3.61E-57 | -1.69E-46 |
| MS.gene053340 | MS.gene065072 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene065072 | 0.808646 | 2.80E-50 | -1.69E-46 |
| MS.gene053786 | MS.gene065072 | 0.806463 | 8.13E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene065072 | 0.815204 | 1.04E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene065072 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene065072 | 0.844492 | 7.31E-59 | -1.69E-46 |
| MS.gene05458 | MS.gene065072 | 0.803348 | 3.64E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene065072 | 0.870737 | 1.16E-66 | -1.69E-46 |
| MS.gene05517 | MS.gene065072 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene065072 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene065072 | 0.820746 | 5.83E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene065072 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene065072 | 0.849574 | 2.96E-60 | -1.69E-46 |
| MS.gene056181 | MS.gene065072 | 0.812394 | 4.34E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene065072 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene065072 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene065072 | 0.848181 | 7.22E-60 | -1.69E-46 |
| MS.gene056787 | MS.gene065072 | 0.802631 | 5.12E-49 | -1.69E-46 |
| MS.gene056901 | MS.gene065072 | 0.809676 | 1.68E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene065072 | 0.885201 | 9.97E-72 | -1.69E-46 |
| MS.gene057094 | MS.gene065072 | 0.828724 | 7.67E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene065072 | 0.860969 | 1.43E-63 | -1.69E-46 |
| MS.gene057234 | MS.gene065072 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene065072 | 0.806866 | 6.68E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene065072 | 0.833705 | 4.57E-56 | -1.69E-46 |
| MS.gene05781 | MS.gene065072 | 0.819014 | 1.45E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene065072 | 0.839475 | 1.55E-57 | -1.69E-46 |
| MS.gene058074 | MS.gene065072 | 0.801742 | 7.80E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene065072 | 0.812837 | 3.47E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene065072 | 0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene065072 | 0.842917 | 1.93E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene065072 | 0.838114 | 3.48E-57 | -1.69E-46 |
| MS.gene059830 | MS.gene065072 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene065072 | -0.827115 | 1.87E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene065072 | -0.82375 | 1.17E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene065072 | 0.834646 | 2.66E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene065072 | 0.881427 | 2.42E-70 | -1.69E-46 |
| MS.gene060365 | MS.gene065072 | 0.831233 | 1.87E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene065072 | 0.820373 | 7.10E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene065072 | 0.830372 | 3.05E-55 | -1.69E-46 |
| MS.gene060763 | MS.gene065072 | 0.860668 | 1.76E-63 | -1.69E-46 |
| MS.gene060830 | MS.gene065072 | 0.810279 | 1.25E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene065072 | 0.825808 | 3.83E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene065072 | 0.823319 | 1.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065072.t1 | MTR_1g111840 | 96.104 | 77 | 3 | 0 | 1 | 77 | 1 | 77 | 1.08e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065072.t1 | AT5G04750 | 58.730 | 63 | 23 | 3 | 13 | 73 | 25 | 86 | 4.37e-13 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTTGGTACCTTGTTAT+CGG | 0.335217 | 1.2:+82806173 | None:intergenic |
| ATCTGTAGGTTTCTCCGCCT+TGG | 0.365908 | 1.2:+82806200 | None:intergenic |
| CACAACTGCGCACCATGGTA+AGG | 0.400797 | 1.2:+82804945 | None:intergenic |
| CAAAGAAAACGTCTACATTC+AGG | 0.413338 | 1.2:-82806350 | MS.gene065072:intron |
| GAAATGGGAGAGGGAAAGGT+TGG | 0.423182 | 1.2:-82806250 | MS.gene065072:CDS |
| ACAGAAGCTAGCGGCTGATA+AGG | 0.427012 | 1.2:-82806223 | MS.gene065072:CDS |
| ATGCGCCTTCCAAGCACAGC+AGG | 0.431050 | 1.2:-82804980 | MS.gene065072:CDS |
| AGGGATCGTGACTCGTTCAA+TGG | 0.456515 | 1.2:-82806446 | MS.gene065072:CDS |
| TTGTTATCGGCATTATCTGT+AGG | 0.488471 | 1.2:+82806186 | None:intergenic |
| TGTCCATTGCAAATTGTTTG+TGG | 0.522812 | 1.2:-82805004 | MS.gene065072:CDS |
| TCTCGCTTCTTCAGCGGCAA+AGG | 0.525127 | 1.2:-82806400 | MS.gene065072:CDS |
| TTTGTGTGTAGAAATGGGAG+AGG | 0.537501 | 1.2:-82806260 | MS.gene065072:intron |
| TTGTGTGTAGAAATGGGAGA+GGG | 0.546268 | 1.2:-82806259 | MS.gene065072:intron |
| TGTAGAAATGGGAGAGGGAA+AGG | 0.549281 | 1.2:-82806254 | MS.gene065072:intron |
| TGCGCCTTCCAAGCACAGCA+GGG | 0.549426 | 1.2:-82804979 | MS.gene065072:CDS |
| ACAACTGCGCACCATGGTAA+GGG | 0.550073 | 1.2:+82804946 | None:intergenic |
| CGCCTTCCAAGCACAGCAGG+GGG | 0.563933 | 1.2:-82804977 | MS.gene065072:CDS |
| GCGCCTTCCAAGCACAGCAG+GGG | 0.568690 | 1.2:-82804978 | MS.gene065072:CDS |
| GGGATGATTGCCCCTTACCA+TGG | 0.579577 | 1.2:-82804957 | MS.gene065072:CDS |
| CAACTGCGCACCATGGTAAG+GGG | 0.587511 | 1.2:+82804947 | None:intergenic |
| TACAGATAATGCCGATAACA+AGG | 0.591322 | 1.2:-82806184 | MS.gene065072:intron |
| TCAATGGATTCAACATCTCG+TGG | 0.600776 | 1.2:-82806430 | MS.gene065072:CDS |
| TGAGATCAGCACTGAGTCGA+GGG | 0.604557 | 1.2:-82806465 | MS.gene065072:CDS |
| ATGAGATCAGCACTGAGTCG+AGG | 0.608842 | 1.2:-82806466 | MS.gene065072:CDS |
| GCTTCTTCTCGCTTCTTCAG+CGG | 0.618308 | 1.2:-82806406 | MS.gene065072:CDS |
| ATGCCACAAACAATTTGCAA+TGG | 0.640316 | 1.2:+82805001 | None:intergenic |
| GCTAGCGGCTGATAAGGCCA+AGG | 0.640541 | 1.2:-82806217 | MS.gene065072:CDS |
| CAAAGGTAAGATTCTTAGCG+AGG | 0.644514 | 1.2:-82806383 | MS.gene065072:CDS |
| AGCGGCTGATAAGGCCAAGG+CGG | 0.664107 | 1.2:-82806214 | MS.gene065072:CDS |
| AAGCGCACAACTGCGCACCA+TGG | 0.674306 | 1.2:+82804940 | None:intergenic |
| GTTGGAGAAACAGAAGCTAG+CGG | 0.726434 | 1.2:-82806232 | MS.gene065072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCTAAAAACAAAATAATT+TGG | + | chr1.2:82805254-82805273 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAGTGAAGAATT+AGG | + | chr1.2:82806296-82806315 | None:intergenic | 15.0% |
| !!! | AATTTTAAGATATGAATCAT+AGG | + | chr1.2:82805482-82805501 | None:intergenic | 15.0% |
| !!! | TACCAAATTATTTTGTTTTT+AGG | - | chr1.2:82805249-82805268 | MS.gene065072:intron | 15.0% |
| !! | ATATCAAAGTTACAGAATAT+TGG | + | chr1.2:82805564-82805583 | None:intergenic | 20.0% |
| !! | ATATTAATAGATCACAAATC+TGG | + | chr1.2:82805322-82805341 | None:intergenic | 20.0% |
| !! | TAAAAAAGGATGAAGAAAAA+GGG | + | chr1.2:82805098-82805117 | None:intergenic | 20.0% |
| !! | TAACTTTGATATGAATATGA+TGG | - | chr1.2:82805572-82805591 | MS.gene065072:intron | 20.0% |
| !! | TATCAAAGTTACAGAATATT+GGG | + | chr1.2:82805563-82805582 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTCTGCATATTT+TGG | - | chr1.2:82805284-82805303 | MS.gene065072:intron | 20.0% |
| !!! | TATTTCTTTCTGCATATTTT+GGG | - | chr1.2:82805285-82805304 | MS.gene065072:intron | 20.0% |
| !!! | TTTGAAATTGTATCATATGA+TGG | - | chr1.2:82805454-82805473 | MS.gene065072:intron | 20.0% |
| !!! | TTTTTGATTTGGTGTATTTT+TGG | - | chr1.2:82805375-82805394 | MS.gene065072:intron | 20.0% |
| ! | AAAAAAGGATGAAGAAAAAG+GGG | + | chr1.2:82805097-82805116 | None:intergenic | 25.0% |
| ! | AATTCGATTTCATTGAAACT+TGG | + | chr1.2:82805910-82805929 | None:intergenic | 25.0% |
| ! | AGAAAGAAAGAAAAAAAGGA+AGG | + | chr1.2:82806119-82806138 | None:intergenic | 25.0% |
| ! | AGAATTTAAGAAGCTAAAAG+TGG | + | chr1.2:82805618-82805637 | None:intergenic | 25.0% |
| ! | ATTCGATTTCATTGAAACTT+GGG | + | chr1.2:82805909-82805928 | None:intergenic | 25.0% |
| ! | CAAGAAATTGGATCTAAAAA+AGG | + | chr1.2:82805112-82805131 | None:intergenic | 25.0% |
| ! | CTAAAAAAGGATGAAGAAAA+AGG | + | chr1.2:82805099-82805118 | None:intergenic | 25.0% |
| ! | GAAAGAAAGAAAAAAAGGAA+GGG | + | chr1.2:82806118-82806137 | None:intergenic | 25.0% |
| ! | TCAAAAAATCATCTCAGAAT+TGG | + | chr1.2:82805362-82805381 | None:intergenic | 25.0% |
| !! | ATAATTTGGTACCTTGTTAT+CGG | + | chr1.2:82805240-82805259 | None:intergenic | 25.0% |
| !! | TGATTTTTGTGTGTAGAAAT+GGG | - | chr1.2:82805145-82805164 | MS.gene065072:intron | 25.0% |
| !! | TTGATTTTTGTGTGTAGAAA+TGG | - | chr1.2:82805144-82805163 | MS.gene065072:intron | 25.0% |
| !!! | CTTTTAGCTTCTTAAATTCT+TGG | - | chr1.2:82805618-82805637 | MS.gene065072:intron | 25.0% |
| !!! | GAATTTTGTTTCTTTTACCA+AGG | - | chr1.2:82805646-82805665 | MS.gene065072:intron | 25.0% |
| !!! | TCCTTTTTTTCTTTCTTTCT+GGG | - | chr1.2:82806119-82806138 | MS.gene065072:intron | 25.0% |
| !!! | TCTGAGATGATTTTTTGATT+TGG | - | chr1.2:82805364-82805383 | MS.gene065072:intron | 25.0% |
| !!! | TTCCTTTTTTTCTTTCTTTC+TGG | - | chr1.2:82806118-82806137 | MS.gene065072:intron | 25.0% |
| !!! | TTTAGTTGATAGCAAAATTG+TGG | + | chr1.2:82806233-82806252 | None:intergenic | 25.0% |
| AAAAAGGATGAAGAAAAAGG+GGG | + | chr1.2:82805096-82805115 | None:intergenic | 30.0% | |
| AAATCGAGTGAAACTAGAAA+TGG | - | chr1.2:82805939-82805958 | MS.gene065072:intron | 30.0% | |
| AATTCGATTTCACTGTCATA+TGG | - | chr1.2:82805746-82805765 | MS.gene065072:intron | 30.0% | |
| AGTTGTGTATAGTGTAAAAG+AGG | + | chr1.2:82806169-82806188 | None:intergenic | 30.0% | |
| ATTGGTTACTCTTTCCAAAA+AGG | + | chr1.2:82806069-82806088 | None:intergenic | 30.0% | |
| CCAAAAATATGTTCAAACCT+TGG | + | chr1.2:82805666-82805685 | None:intergenic | 30.0% | |
| TAGTTAATGACTAAACAGTG+AGG | + | chr1.2:82805829-82805848 | None:intergenic | 30.0% | |
| TAGTTTCACTCGATTTCTAA+AGG | + | chr1.2:82805935-82805954 | None:intergenic | 30.0% | |
| TTGGTTACTCTTTCCAAAAA+GGG | + | chr1.2:82806068-82806087 | None:intergenic | 30.0% | |
| ! | AAGCAACACACTCTTTTTAA+AGG | - | chr1.2:82805797-82805816 | MS.gene065072:intron | 30.0% |
| ! | AATTTATGCTGTACCCTTTT+TGG | - | chr1.2:82806052-82806071 | MS.gene065072:intron | 30.0% |
| ! | AGCAACACACTCTTTTTAAA+GGG | - | chr1.2:82805798-82805817 | MS.gene065072:intron | 30.0% |
| ! | CCAAGGTTTGAACATATTTT+TGG | - | chr1.2:82805663-82805682 | MS.gene065072:intron | 30.0% |
| ! | TCTTTTACACTATACACAAC+TGG | - | chr1.2:82806168-82806187 | MS.gene065072:intron | 30.0% |
| !!! | CCTTTTTTTCTTTCTTTCTG+GGG | - | chr1.2:82806120-82806139 | MS.gene065072:intron | 30.0% |
| !!! | GAACATATTTTTGGTTAACG+TGG | - | chr1.2:82805672-82805691 | MS.gene065072:intron | 30.0% |
| !!! | GTATGCTTTAGCACATTTTT+TGG | - | chr1.2:82806354-82806373 | MS.gene065072:CDS | 30.0% |
| AACTAGAAATGGAGTTGGAA+TGG | - | chr1.2:82805950-82805969 | MS.gene065072:intron | 35.0% | |
| AGAATATTGGGAGCTACAAA+AGG | + | chr1.2:82805551-82805570 | None:intergenic | 35.0% | |
| AGAGTAACCAATGTTAGACT+TGG | - | chr1.2:82806077-82806096 | MS.gene065072:intron | 35.0% | |
| AGTGAAACTAGAAATGGAGT+TGG | - | chr1.2:82805945-82805964 | MS.gene065072:intron | 35.0% | |
| ATGCCACAAACAATTTGCAA+TGG | + | chr1.2:82806412-82806431 | None:intergenic | 35.0% | |
| CAAAGAAAACGTCTACATTC+AGG | - | chr1.2:82805060-82805079 | MS.gene065072:intron | 35.0% | |
| CCCCAGAAAGAAAGAAAAAA+AGG | + | chr1.2:82806123-82806142 | None:intergenic | 35.0% | |
| GTTAGTACCAAGTCTAACAT+TGG | + | chr1.2:82806087-82806106 | None:intergenic | 35.0% | |
| TACAGATAATGCCGATAACA+AGG | - | chr1.2:82805226-82805245 | MS.gene065072:intron | 35.0% | |
| TGTCCATTGCAAATTGTTTG+TGG | - | chr1.2:82806406-82806425 | MS.gene065072:CDS | 35.0% | |
| TGTGTATAGTGTAAAAGAGG+TGG | + | chr1.2:82806166-82806185 | None:intergenic | 35.0% | |
| TTGTGGAGAGATGAATGTAA+AGG | + | chr1.2:82806216-82806235 | None:intergenic | 35.0% | |
| TTGTTATCGGCATTATCTGT+AGG | + | chr1.2:82805227-82805246 | None:intergenic | 35.0% | |
| ! | AATTAGGTTGCAGTCGTTTA+AGG | + | chr1.2:82806280-82806299 | None:intergenic | 35.0% |
| ! | ATTAGGTTGCAGTCGTTTAA+GGG | + | chr1.2:82806279-82806298 | None:intergenic | 35.0% |
| ! | CCAATTTCTTGCTTCTGAAA+CGG | - | chr1.2:82805121-82805140 | MS.gene065072:intron | 35.0% |
| ! | CTGAATGTAGACGTTTTCTT+TGG | + | chr1.2:82805062-82805081 | None:intergenic | 35.0% |
| !! | CAACACACTCTTTTTAAAGG+GGG | - | chr1.2:82805800-82805819 | MS.gene065072:intron | 35.0% |
| !! | GCAACACACTCTTTTTAAAG+GGG | - | chr1.2:82805799-82805818 | MS.gene065072:intron | 35.0% |
| ATTCAATGAAACACGACCAC+AGG | + | chr1.2:82805729-82805748 | None:intergenic | 40.0% | |
| CAAAGGTAAGATTCTTAGCG+AGG | - | chr1.2:82805027-82805046 | MS.gene065072:intron | 40.0% | |
| CCGTTTCAGAAGCAAGAAAT+TGG | + | chr1.2:82805124-82805143 | None:intergenic | 40.0% | |
| GAAATGGAGTTGGAATGGTA+AGG | - | chr1.2:82805955-82805974 | MS.gene065072:intron | 40.0% | |
| TCGATTTCACTGTCATATGG+TGG | - | chr1.2:82805749-82805768 | MS.gene065072:intron | 40.0% | |
| TTCCATGTTGCTGTGAATCA+AGG | - | chr1.2:82806383-82806402 | MS.gene065072:CDS | 40.0% | |
| TTGTGTGTAGAAATGGGAGA+GGG | - | chr1.2:82805151-82805170 | MS.gene065072:intron | 40.0% | |
| TTTGTGTGTAGAAATGGGAG+AGG | - | chr1.2:82805150-82805169 | MS.gene065072:intron | 40.0% | |
| ! | CTACGAACACACTCTTTTGA+AGG | - | chr1.2:82805850-82805869 | MS.gene065072:intron | 40.0% |
| ! | TCAATGGATTCAACATCTCG+TGG | - | chr1.2:82804980-82804999 | MS.gene065072:CDS | 40.0% |
| !! | AAAAGAGTGTGTTGCTTGCT+AGG | + | chr1.2:82805794-82805813 | None:intergenic | 40.0% |
| !! | CACTCTTTTGAAGGTGGATT+TGG | - | chr1.2:82805859-82805878 | MS.gene065072:intron | 40.0% |
| !! | TTGAAGGTGGATTTGGCTTT+CGG | - | chr1.2:82805866-82805885 | MS.gene065072:intron | 40.0% |
| !! | TTTTCTTTCTTTCTGGGGAG+TGG | - | chr1.2:82806125-82806144 | MS.gene065072:intron | 40.0% |
| CACCTTGATTCACAGCAACA+TGG | + | chr1.2:82806388-82806407 | None:intergenic | 45.0% | |
| GTTGGAGAAACAGAAGCTAG+CGG | - | chr1.2:82805178-82805197 | MS.gene065072:intron | 45.0% | |
| TGTAGAAATGGGAGAGGGAA+AGG | - | chr1.2:82805156-82805175 | MS.gene065072:intron | 45.0% | |
| ! | ACGTGGTGATGACATGATTC+TGG | - | chr1.2:82805701-82805720 | MS.gene065072:intron | 45.0% |
| !! | CGAACACACTCTTTTGAAGG+TGG | - | chr1.2:82805853-82805872 | MS.gene065072:intron | 45.0% |
| !! | TGACATGATTCTGGAACCTG+TGG | - | chr1.2:82805710-82805729 | MS.gene065072:intron | 45.0% |
| ACAACTGCGCACCATGGTAA+GGG | + | chr1.2:82806467-82806486 | None:intergenic | 50.0% | |
| ACAGAAGCTAGCGGCTGATA+AGG | - | chr1.2:82805187-82805206 | MS.gene065072:intron | 50.0% | |
| AGGGATCGTGACTCGTTCAA+TGG | - | chr1.2:82804964-82804983 | MS.gene065072:CDS | 50.0% | |
| ATCTGTAGGTTTCTCCGCCT+TGG | + | chr1.2:82805213-82805232 | None:intergenic | 50.0% | |
| GAAATGGGAGAGGGAAAGGT+TGG | - | chr1.2:82805160-82805179 | MS.gene065072:intron | 50.0% | |
| GCTTCTTCTCGCTTCTTCAG+CGG | - | chr1.2:82805004-82805023 | MS.gene065072:CDS | 50.0% | |
| GGTTAACGTGGTATTGCACG+TGG | - | chr1.2:82805684-82805703 | MS.gene065072:intron | 50.0% | |
| TGGAGTTGGAATGGTAAGGC+AGG | - | chr1.2:82805959-82805978 | MS.gene065072:intron | 50.0% | |
| ! | ATGAGATCAGCACTGAGTCG+AGG | - | chr1.2:82804944-82804963 | MS.gene065072:CDS | 50.0% |
| ! | TGAGATCAGCACTGAGTCGA+GGG | - | chr1.2:82804945-82804964 | MS.gene065072:CDS | 50.0% |
| AATCATCCCCCTGCTGTGCT+TGG | + | chr1.2:82806442-82806461 | None:intergenic | 55.0% | |
| CAACTGCGCACCATGGTAAG+GGG | + | chr1.2:82806466-82806485 | None:intergenic | 55.0% | |
| CACAACTGCGCACCATGGTA+AGG | + | chr1.2:82806468-82806487 | None:intergenic | 55.0% | |
| GGGATGATTGCCCCTTACCA+TGG | - | chr1.2:82806453-82806472 | MS.gene065072:CDS | 55.0% | |
| TCTCGCTTCTTCAGCGGCAA+AGG | - | chr1.2:82805010-82805029 | MS.gene065072:intron | 55.0% | |
| AAGCGCACAACTGCGCACCA+TGG | + | chr1.2:82806473-82806492 | None:intergenic | 60.0% | |
| AGCGGCTGATAAGGCCAAGG+CGG | - | chr1.2:82805196-82805215 | MS.gene065072:intron | 60.0% | |
| ATCCCCCTGCTGTGCTTGGA+AGG | + | chr1.2:82806438-82806457 | None:intergenic | 60.0% | |
| ATGCGCCTTCCAAGCACAGC+AGG | - | chr1.2:82806430-82806449 | MS.gene065072:CDS | 60.0% | |
| GCTAGCGGCTGATAAGGCCA+AGG | - | chr1.2:82805193-82805212 | MS.gene065072:intron | 60.0% | |
| TGCGCCTTCCAAGCACAGCA+GGG | - | chr1.2:82806431-82806450 | MS.gene065072:CDS | 60.0% | |
| CGCCTTCCAAGCACAGCAGG+GGG | - | chr1.2:82806433-82806452 | MS.gene065072:CDS | 65.0% | |
| GCGCCTTCCAAGCACAGCAG+GGG | - | chr1.2:82806432-82806451 | MS.gene065072:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82804938 | 82806494 | 82804938 | ID=MS.gene065072 |
| chr1.2 | mRNA | 82804938 | 82806494 | 82804938 | ID=MS.gene065072.t1;Parent=MS.gene065072 |
| chr1.2 | exon | 82806351 | 82806494 | 82806351 | ID=MS.gene065072.t1.exon1;Parent=MS.gene065072.t1 |
| chr1.2 | CDS | 82806351 | 82806494 | 82806351 | ID=cds.MS.gene065072.t1;Parent=MS.gene065072.t1 |
| chr1.2 | exon | 82806185 | 82806271 | 82806185 | ID=MS.gene065072.t1.exon2;Parent=MS.gene065072.t1 |
| chr1.2 | CDS | 82806185 | 82806271 | 82806185 | ID=cds.MS.gene065072.t1;Parent=MS.gene065072.t1 |
| chr1.2 | exon | 82804938 | 82805027 | 82804938 | ID=MS.gene065072.t1.exon3;Parent=MS.gene065072.t1 |
| chr1.2 | CDS | 82804938 | 82805027 | 82804938 | ID=cds.MS.gene065072.t1;Parent=MS.gene065072.t1 |
| Gene Sequence |
| Protein sequence |
