Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06990.t1 | PNY12805.1 | 84.8 | 198 | 30 | 0 | 1 | 198 | 1 | 198 | 1.70E-85 | 325.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06990.t1 | O22244 | 44.9 | 176 | 91 | 3 | 19 | 192 | 37 | 208 | 1.6e-31 | 137.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06990.t1 | A0A2K3PC22 | 84.8 | 198 | 30 | 0 | 1 | 198 | 1 | 198 | 1.3e-85 | 325.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene06990 | 0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene06990 | 0.804007 | 2.66E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene06990 | 0.837514 | 4.97E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene06990 | 0.816575 | 5.15E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene06990 | 0.8024 | 5.71E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene06990 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene06990 | 0.840785 | 7.05E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene06990 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene06990 | 0.843532 | 1.32E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene06990 | 0.877751 | 4.89E-69 | -1.69E-46 |
| MS.gene050397 | MS.gene06990 | 0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene050398 | MS.gene06990 | 0.811612 | 6.42E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene06990 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene06990 | 0.801185 | 1.01E-48 | -1.69E-46 |
| MS.gene050406 | MS.gene06990 | 0.81636 | 5.76E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene06990 | 0.801586 | 8.40E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene06990 | 0.836512 | 8.96E-57 | -1.69E-46 |
| MS.gene050812 | MS.gene06990 | 0.800114 | 1.68E-48 | -1.69E-46 |
| MS.gene05101 | MS.gene06990 | 0.823159 | 1.61E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene06990 | 0.819796 | 9.62E-53 | -1.69E-46 |
| MS.gene051360 | MS.gene06990 | 0.809865 | 1.53E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene06990 | 0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene06990 | 0.820374 | 7.10E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene06990 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene06990 | 0.807739 | 4.36E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene06990 | -0.817785 | 2.75E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene06990 | 0.824435 | 8.08E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene06990 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene06990 | 0.872634 | 2.74E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene06990 | 0.862385 | 5.26E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene06990 | 0.843629 | 1.25E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene06990 | 0.89219 | 1.99E-74 | -1.69E-46 |
| MS.gene052485 | MS.gene06990 | 0.839384 | 1.64E-57 | -1.69E-46 |
| MS.gene053073 | MS.gene06990 | 0.840484 | 8.46E-58 | -1.69E-46 |
| MS.gene05316 | MS.gene06990 | 0.82738 | 1.62E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene06990 | 0.818219 | 2.20E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene06990 | 0.83589 | 1.29E-56 | -1.69E-46 |
| MS.gene053577 | MS.gene06990 | 0.822134 | 2.79E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene06990 | 0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene06990 | 0.801742 | 7.80E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene06990 | 0.854809 | 9.61E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene06990 | 0.881404 | 2.47E-70 | -1.69E-46 |
| MS.gene054010 | MS.gene06990 | 0.842245 | 2.91E-58 | -1.69E-46 |
| MS.gene054011 | MS.gene06990 | 0.839932 | 1.18E-57 | -1.69E-46 |
| MS.gene054012 | MS.gene06990 | 0.837902 | 3.95E-57 | -1.69E-46 |
| MS.gene054013 | MS.gene06990 | 0.839607 | 1.43E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene06990 | 0.868814 | 4.94E-66 | -1.69E-46 |
| MS.gene054183 | MS.gene06990 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene06990 | 0.838256 | 3.20E-57 | -1.69E-46 |
| MS.gene054542 | MS.gene06990 | 0.800007 | 1.76E-48 | -1.69E-46 |
| MS.gene054556 | MS.gene06990 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene06990 | 0.823434 | 1.39E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene06990 | 0.877494 | 6.01E-69 | -1.69E-46 |
| MS.gene055277 | MS.gene06990 | 0.812654 | 3.80E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene06990 | 0.802025 | 6.82E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene06990 | 0.827342 | 1.65E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene06990 | 0.817253 | 3.63E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene06990 | 0.847505 | 1.11E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene06990 | 0.849324 | 3.48E-60 | -1.69E-46 |
| MS.gene055802 | MS.gene06990 | 0.800706 | 1.27E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene06990 | 0.845586 | 3.70E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene06990 | 0.842278 | 2.85E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene06990 | 0.823125 | 1.64E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene06990 | 0.81937 | 1.20E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene06990 | 0.848284 | 6.76E-60 | -1.69E-46 |
| MS.gene056723 | MS.gene06990 | 0.827862 | 1.24E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene06990 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene06990 | 0.864941 | 8.46E-65 | -1.69E-46 |
| MS.gene057121 | MS.gene06990 | 0.818065 | 2.38E-52 | -1.69E-46 |
| MS.gene05733 | MS.gene06990 | 0.804353 | 2.25E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene06990 | 0.855299 | 6.93E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene06990 | 0.839235 | 1.79E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene06990 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene06990 | 0.843005 | 1.83E-58 | -1.69E-46 |
| MS.gene057469 | MS.gene06990 | 0.811483 | 6.84E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene06990 | 0.837869 | 4.03E-57 | -1.69E-46 |
| MS.gene057752 | MS.gene06990 | 0.814813 | 1.27E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene06990 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene06990 | 0.815476 | 9.07E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene06990 | 0.828924 | 6.86E-55 | -1.69E-46 |
| MS.gene057825 | MS.gene06990 | 0.824861 | 6.42E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene06990 | 0.860686 | 1.74E-63 | -1.69E-46 |
| MS.gene058007 | MS.gene06990 | 0.867468 | 1.34E-65 | -1.69E-46 |
| MS.gene05811 | MS.gene06990 | 0.851874 | 6.68E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene06990 | 0.837615 | 4.68E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene06990 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene058276 | MS.gene06990 | 0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene06990 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene06990 | 0.825554 | 4.40E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene06990 | 0.80328 | 3.76E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene06990 | 0.821926 | 3.11E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene06990 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene06990 | 0.805961 | 1.04E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene06990 | 0.813714 | 2.23E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene06990 | 0.844857 | 5.83E-59 | -1.69E-46 |
| MS.gene058995 | MS.gene06990 | 0.815951 | 7.10E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene06990 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene06990 | 0.870793 | 1.12E-66 | -1.69E-46 |
| MS.gene059082 | MS.gene06990 | 0.836939 | 6.97E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene06990 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene06990 | 0.819771 | 9.75E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene06990 | 0.837313 | 5.60E-57 | -1.69E-46 |
| MS.gene059462 | MS.gene06990 | 0.859928 | 2.95E-63 | -1.69E-46 |
| MS.gene059597 | MS.gene06990 | 0.839586 | 1.45E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene06990 | 0.818965 | 1.49E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene06990 | 0.871361 | 7.25E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene06990 | 0.879847 | 8.92E-70 | -1.69E-46 |
| MS.gene059695 | MS.gene06990 | 0.87787 | 4.44E-69 | -1.69E-46 |
| MS.gene059807 | MS.gene06990 | 0.822711 | 2.05E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene06990 | 0.8362 | 1.08E-56 | -1.69E-46 |
| MS.gene059876 | MS.gene06990 | 0.823082 | 1.68E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene06990 | 0.831363 | 1.74E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene06990 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene060247 | MS.gene06990 | 0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene06990 | 0.82896 | 6.72E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene06990 | 0.817726 | 2.84E-52 | -1.69E-46 |
| MS.gene060407 | MS.gene06990 | 0.815873 | 7.39E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene06990 | 0.829463 | 5.08E-55 | -1.69E-46 |
| MS.gene060986 | MS.gene06990 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene06990 | 0.881677 | 1.97E-70 | -1.69E-46 |
| MS.gene061051 | MS.gene06990 | -0.819165 | 1.34E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene06990 | 0.814233 | 1.71E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene06990 | 0.826769 | 2.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06990.t1 | MTR_7g108790 | 94.972 | 179 | 9 | 0 | 17 | 195 | 17 | 195 | 5.17e-124 | 348 |
| MS.gene06990.t1 | MTR_1g088540 | 69.536 | 151 | 46 | 0 | 48 | 198 | 1 | 151 | 6.19e-75 | 222 |
| MS.gene06990.t1 | MTR_5g012000 | 34.043 | 188 | 114 | 3 | 8 | 190 | 28 | 210 | 1.25e-31 | 114 |
| MS.gene06990.t1 | MTR_4g120825 | 32.338 | 201 | 123 | 4 | 5 | 192 | 6 | 206 | 2.75e-31 | 113 |
| MS.gene06990.t1 | MTR_4g120830 | 32.338 | 201 | 123 | 4 | 5 | 192 | 6 | 206 | 4.27e-31 | 112 |
| MS.gene06990.t1 | MTR_4g035905 | 31.282 | 195 | 124 | 3 | 3 | 190 | 4 | 195 | 7.80e-31 | 112 |
| MS.gene06990.t1 | MTR_3g008840 | 33.333 | 168 | 108 | 3 | 26 | 189 | 18 | 185 | 7.12e-30 | 108 |
| MS.gene06990.t1 | MTR_8g104765 | 33.140 | 172 | 103 | 3 | 34 | 193 | 45 | 216 | 1.22e-29 | 109 |
| MS.gene06990.t1 | MTR_4g035880 | 30.729 | 192 | 129 | 2 | 3 | 190 | 4 | 195 | 2.58e-29 | 107 |
| MS.gene06990.t1 | MTR_4g035870 | 29.688 | 192 | 131 | 2 | 3 | 190 | 4 | 195 | 1.13e-27 | 103 |
| MS.gene06990.t1 | MTR_3g008820 | 29.762 | 168 | 114 | 3 | 26 | 189 | 17 | 184 | 2.93e-26 | 99.8 |
| MS.gene06990.t1 | MTR_2g043560 | 32.768 | 177 | 107 | 4 | 19 | 190 | 20 | 189 | 2.26e-25 | 97.8 |
| MS.gene06990.t1 | MTR_4g101760 | 30.890 | 191 | 124 | 3 | 7 | 189 | 10 | 200 | 1.22e-24 | 95.9 |
| MS.gene06990.t1 | MTR_4g025550 | 29.858 | 211 | 124 | 6 | 1 | 196 | 5 | 206 | 5.73e-22 | 89.4 |
| MS.gene06990.t1 | MTR_4g124855 | 30.928 | 194 | 120 | 6 | 3 | 187 | 8 | 196 | 1.97e-21 | 87.8 |
| MS.gene06990.t1 | MTR_4g025590 | 30.178 | 169 | 103 | 4 | 34 | 189 | 4 | 170 | 2.45e-19 | 81.6 |
| MS.gene06990.t1 | MTR_4g025610 | 29.384 | 211 | 127 | 7 | 3 | 196 | 1 | 206 | 4.71e-19 | 81.6 |
| MS.gene06990.t1 | MTR_4g025620 | 29.412 | 204 | 122 | 7 | 3 | 189 | 1 | 199 | 5.08e-19 | 81.6 |
| MS.gene06990.t1 | MTR_7g112580 | 29.487 | 156 | 107 | 3 | 34 | 187 | 40 | 194 | 6.21e-17 | 78.6 |
| MS.gene06990.t1 | MTR_7g108905 | 30.366 | 191 | 120 | 3 | 7 | 188 | 15 | 201 | 1.41e-16 | 77.4 |
| MS.gene06990.t1 | MTR_8g023310 | 32.903 | 155 | 99 | 4 | 34 | 183 | 68 | 222 | 2.23e-15 | 73.9 |
| MS.gene06990.t1 | MTR_1g008140 | 28.804 | 184 | 106 | 5 | 17 | 183 | 67 | 242 | 8.24e-15 | 72.4 |
| MS.gene06990.t1 | MTR_4g120290 | 33.333 | 159 | 98 | 5 | 33 | 189 | 58 | 210 | 1.00e-14 | 72.0 |
| MS.gene06990.t1 | MTR_3g091380 | 27.273 | 165 | 106 | 2 | 29 | 183 | 73 | 233 | 2.05e-14 | 71.2 |
| MS.gene06990.t1 | MTR_3g008760 | 26.582 | 158 | 109 | 4 | 34 | 185 | 67 | 223 | 6.96e-14 | 68.2 |
| MS.gene06990.t1 | MTR_8g042900 | 29.487 | 156 | 102 | 3 | 34 | 184 | 76 | 228 | 9.51e-14 | 69.3 |
| MS.gene06990.t1 | MTR_2g436040 | 30.380 | 158 | 102 | 5 | 33 | 187 | 42 | 194 | 2.17e-13 | 68.2 |
| MS.gene06990.t1 | MTR_0036s0140 | 28.729 | 181 | 117 | 5 | 7 | 184 | 50 | 221 | 5.49e-13 | 65.5 |
| MS.gene06990.t1 | MTR_2g436070 | 28.125 | 160 | 105 | 3 | 29 | 185 | 51 | 203 | 8.23e-13 | 66.2 |
| MS.gene06990.t1 | MTR_4g120280 | 29.487 | 156 | 106 | 1 | 34 | 189 | 59 | 210 | 9.80e-13 | 66.2 |
| MS.gene06990.t1 | MTR_3g010780 | 28.205 | 156 | 107 | 3 | 32 | 184 | 69 | 222 | 2.13e-12 | 65.5 |
| MS.gene06990.t1 | MTR_7g112590 | 26.506 | 166 | 117 | 4 | 34 | 198 | 59 | 220 | 3.42e-12 | 64.7 |
| MS.gene06990.t1 | MTR_2g436050 | 27.778 | 162 | 103 | 4 | 29 | 185 | 51 | 203 | 3.78e-12 | 64.7 |
| MS.gene06990.t1 | MTR_1g083510 | 27.329 | 161 | 113 | 3 | 34 | 193 | 56 | 213 | 6.08e-12 | 63.9 |
| MS.gene06990.t1 | MTR_1g083470 | 26.994 | 163 | 107 | 3 | 34 | 190 | 58 | 214 | 2.72e-11 | 62.0 |
| MS.gene06990.t1 | MTR_1g083500 | 26.994 | 163 | 107 | 3 | 34 | 190 | 58 | 214 | 2.72e-11 | 62.0 |
| MS.gene06990.t1 | MTR_4g124550 | 31.325 | 166 | 102 | 6 | 34 | 195 | 81 | 238 | 4.87e-11 | 61.2 |
| MS.gene06990.t1 | MTR_8g023150 | 27.500 | 160 | 107 | 4 | 33 | 187 | 76 | 231 | 5.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06990.t1 | AT3G62820 | 44.560 | 193 | 101 | 3 | 3 | 192 | 5 | 194 | 5.37e-53 | 168 |
| MS.gene06990.t1 | AT2G47670 | 47.531 | 162 | 80 | 3 | 34 | 192 | 49 | 208 | 3.61e-39 | 133 |
| MS.gene06990.t1 | AT5G62360 | 34.177 | 158 | 101 | 3 | 34 | 189 | 44 | 200 | 4.01e-30 | 110 |
| MS.gene06990.t1 | AT5G20740 | 33.684 | 190 | 118 | 4 | 9 | 190 | 7 | 196 | 6.33e-30 | 109 |
| MS.gene06990.t1 | AT5G20740 | 33.684 | 190 | 118 | 4 | 9 | 190 | 41 | 230 | 1.37e-29 | 109 |
| MS.gene06990.t1 | AT4G12390 | 35.758 | 165 | 99 | 2 | 32 | 189 | 38 | 202 | 1.97e-28 | 105 |
| MS.gene06990.t1 | AT1G62770 | 32.632 | 190 | 119 | 5 | 8 | 188 | 7 | 196 | 1.70e-27 | 103 |
| MS.gene06990.t1 | AT5G62350 | 32.121 | 165 | 106 | 3 | 32 | 190 | 37 | 201 | 6.70e-27 | 102 |
| MS.gene06990.t1 | AT4G25260 | 31.795 | 195 | 117 | 5 | 7 | 189 | 9 | 199 | 3.10e-26 | 100 |
| MS.gene06990.t1 | AT2G01610 | 31.818 | 176 | 102 | 4 | 34 | 191 | 45 | 220 | 1.32e-24 | 96.7 |
| MS.gene06990.t1 | AT1G62760 | 31.953 | 169 | 112 | 1 | 25 | 190 | 139 | 307 | 1.52e-24 | 98.2 |
| MS.gene06990.t1 | AT1G14890 | 33.333 | 168 | 94 | 4 | 34 | 191 | 59 | 218 | 4.75e-24 | 95.1 |
| MS.gene06990.t1 | AT1G70720 | 32.990 | 194 | 114 | 5 | 11 | 192 | 9 | 198 | 1.66e-22 | 90.5 |
| MS.gene06990.t1 | AT1G70720 | 32.353 | 204 | 120 | 6 | 1 | 192 | 13 | 210 | 2.20e-22 | 90.5 |
| MS.gene06990.t1 | AT1G23205 | 31.053 | 190 | 119 | 4 | 9 | 186 | 9 | 198 | 3.25e-22 | 89.7 |
| MS.gene06990.t1 | AT3G47380 | 30.061 | 163 | 108 | 3 | 32 | 188 | 37 | 199 | 7.24e-22 | 89.0 |
| MS.gene06990.t1 | AT3G14310 | 35.542 | 166 | 97 | 6 | 34 | 192 | 59 | 221 | 3.92e-21 | 90.9 |
| MS.gene06990.t1 | AT4G25250 | 27.660 | 188 | 122 | 5 | 8 | 184 | 9 | 193 | 7.21e-17 | 75.5 |
| MS.gene06990.t1 | AT3G05620 | 28.079 | 203 | 128 | 5 | 1 | 187 | 1 | 201 | 7.29e-17 | 78.6 |
| MS.gene06990.t1 | AT5G51520 | 30.256 | 195 | 120 | 8 | 9 | 187 | 8 | 202 | 3.02e-16 | 73.9 |
| MS.gene06990.t1 | AT3G05610 | 29.487 | 156 | 106 | 3 | 34 | 188 | 58 | 210 | 9.38e-16 | 75.1 |
| MS.gene06990.t1 | AT1G53830 | 32.530 | 166 | 102 | 6 | 34 | 192 | 62 | 224 | 3.65e-15 | 73.6 |
| MS.gene06990.t1 | AT4G00080 | 28.221 | 163 | 105 | 5 | 34 | 185 | 36 | 197 | 5.49e-15 | 70.9 |
| MS.gene06990.t1 | AT3G49220 | 30.921 | 152 | 97 | 4 | 34 | 183 | 132 | 277 | 2.07e-14 | 71.2 |
| MS.gene06990.t1 | AT5G04960 | 30.065 | 153 | 95 | 3 | 33 | 184 | 67 | 208 | 3.49e-14 | 70.5 |
| MS.gene06990.t1 | AT3G14300 | 27.807 | 187 | 123 | 5 | 13 | 188 | 250 | 435 | 4.97e-14 | 70.5 |
| MS.gene06990.t1 | AT3G49220 | 30.921 | 152 | 97 | 4 | 34 | 183 | 132 | 277 | 5.35e-14 | 70.1 |
| MS.gene06990.t1 | AT3G49220 | 30.921 | 152 | 97 | 4 | 34 | 183 | 87 | 232 | 5.94e-14 | 70.1 |
| MS.gene06990.t1 | AT5G27870 | 25.806 | 155 | 113 | 2 | 34 | 188 | 57 | 209 | 2.21e-13 | 68.6 |
| MS.gene06990.t1 | AT5G53370 | 29.412 | 153 | 101 | 3 | 34 | 183 | 111 | 259 | 3.30e-12 | 65.1 |
| MS.gene06990.t1 | AT5G53370 | 29.412 | 153 | 101 | 3 | 34 | 183 | 75 | 223 | 4.65e-12 | 64.3 |
| MS.gene06990.t1 | AT4G15980 | 27.273 | 154 | 105 | 3 | 38 | 187 | 52 | 202 | 7.74e-12 | 63.9 |
| MS.gene06990.t1 | AT4G15980 | 27.273 | 154 | 105 | 3 | 38 | 187 | 62 | 212 | 8.95e-12 | 63.5 |
| MS.gene06990.t1 | AT1G53840 | 28.144 | 167 | 109 | 4 | 33 | 189 | 72 | 237 | 5.48e-11 | 61.2 |
| MS.gene06990.t1 | AT3G10710 | 27.551 | 196 | 122 | 7 | 1 | 188 | 33 | 216 | 8.29e-11 | 60.8 |
| MS.gene06990.t1 | AT5G49180 | 28.497 | 193 | 124 | 6 | 2 | 184 | 17 | 205 | 8.99e-11 | 60.8 |
Find 34 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAAATTGCTGCAAAATA+AGG | 0.253916 | 7.3:-6259023 | MS.gene06990:CDS |
| CGGCACGTGCCCATTTGCTT+GGG | 0.271742 | 7.3:+6259326 | None:intergenic |
| TAAACTTGCTTCTACGGGTT+TGG | 0.307810 | 7.3:-6258954 | MS.gene06990:CDS |
| CCGGCACGTGCCCATTTGCT+TGG | 0.317654 | 7.3:+6259325 | None:intergenic |
| TCAGATTGCATAGAAACTTT+TGG | 0.319992 | 7.3:-6259205 | MS.gene06990:CDS |
| GAAATACTAATAGTAAAATA+AGG | 0.351810 | 7.3:+6259491 | None:intergenic |
| AATGAAGACACTTGCCTTGA+TGG | 0.365286 | 7.3:-6259070 | MS.gene06990:CDS |
| CAAGCAAATGGGCACGTGCC+GGG | 0.387799 | 7.3:-6259324 | MS.gene06990:CDS |
| CAGGAAGAACCCCAAGCAAA+TGG | 0.388875 | 7.3:-6259336 | MS.gene06990:CDS |
| AAACACATTTAGTACACAAA+TGG | 0.389035 | 7.3:-6259128 | MS.gene06990:CDS |
| TGTCGATAAACTTGCTTCTA+CGG | 0.397220 | 7.3:-6258960 | MS.gene06990:CDS |
| GTGTGTGGATGCAAAGGTTT+TGG | 0.415849 | 7.3:+6259380 | None:intergenic |
| TGGGGTTCTTCCTGCTGTGT+TGG | 0.420102 | 7.3:+6259345 | None:intergenic |
| ATGCACTTGATGATCTTCAT+AGG | 0.431401 | 7.3:-6259180 | MS.gene06990:CDS |
| ACTTGCCTTGATGGGTTTGA+AGG | 0.437348 | 7.3:-6259061 | MS.gene06990:CDS |
| AAACAAGAACAACAATGTTA+AGG | 0.453205 | 7.3:-6259425 | MS.gene06990:CDS |
| GTCGATAAACTTGCTTCTAC+GGG | 0.454014 | 7.3:-6258959 | MS.gene06990:CDS |
| AGCCAAATTGTATATGCAAA+AGG | 0.474317 | 7.3:-6259448 | MS.gene06990:CDS |
| ATAGGTCACTTGGTGTGCTT+AGG | 0.475642 | 7.3:-6259162 | MS.gene06990:CDS |
| AACACATTTAGTACACAAAT+GGG | 0.486915 | 7.3:-6259127 | MS.gene06990:CDS |
| CCAAGCAAATGGGCACGTGC+CGG | 0.491123 | 7.3:-6259325 | MS.gene06990:CDS |
| AGGAAGAACCCCAAGCAAAT+GGG | 0.506154 | 7.3:-6259335 | MS.gene06990:CDS |
| AAGCAAATGGGCACGTGCCG+GGG | 0.507156 | 7.3:-6259323 | MS.gene06990:CDS |
| ATGAAGACACTTGCCTTGAT+GGG | 0.520738 | 7.3:-6259069 | MS.gene06990:CDS |
| ATGGGCACGTGCCGGGGTGT+CGG | 0.523182 | 7.3:-6259317 | MS.gene06990:CDS |
| AAGATGAACGAGAAGATGAA+AGG | 0.537634 | 7.3:-6259247 | MS.gene06990:CDS |
| GGCACGTGCCCATTTGCTTG+GGG | 0.543135 | 7.3:+6259327 | None:intergenic |
| GCACAATTCTCCAACACAGC+AGG | 0.560783 | 7.3:-6259355 | MS.gene06990:CDS |
| GATGATCTTCATAGGTCACT+TGG | 0.570132 | 7.3:-6259172 | MS.gene06990:CDS |
| TGGAGAATTGTGCTAGTGTG+TGG | 0.572339 | 7.3:+6259365 | None:intergenic |
| GTGCTAGTGTGTGGATGCAA+AGG | 0.620695 | 7.3:+6259374 | None:intergenic |
| AGGAAGCTTGCAGTGTCACA+AGG | 0.623585 | 7.3:-6259405 | MS.gene06990:CDS |
| AAATGGGAGATCTCAACACA+TGG | 0.662660 | 7.3:-6259111 | MS.gene06990:CDS |
| GCTTATCGTTACCGACACCC+CGG | 0.696996 | 7.3:+6259306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATACTAATAGTAAAATA+AGG | + | chr7.3:6258954-6258973 | None:intergenic | 15.0% |
| !! | AATTAAATTGCTGCAAAATA+AGG | - | chr7.3:6259419-6259438 | MS.gene06990:CDS | 20.0% |
| ! | AAACAAGAACAACAATGTTA+AGG | - | chr7.3:6259017-6259036 | MS.gene06990:CDS | 25.0% |
| ! | AAACACATTTAGTACACAAA+TGG | - | chr7.3:6259314-6259333 | MS.gene06990:CDS | 25.0% |
| ! | AACACATTTAGTACACAAAT+GGG | - | chr7.3:6259315-6259334 | MS.gene06990:CDS | 25.0% |
| !! | TTCCTTTTGCATATACAATT+TGG | + | chr7.3:6258999-6259018 | None:intergenic | 25.0% |
| AGCCAAATTGTATATGCAAA+AGG | - | chr7.3:6258994-6259013 | MS.gene06990:CDS | 30.0% | |
| ! | TCAGATTGCATAGAAACTTT+TGG | - | chr7.3:6259237-6259256 | MS.gene06990:CDS | 30.0% |
| AAGATGAACGAGAAGATGAA+AGG | - | chr7.3:6259195-6259214 | MS.gene06990:CDS | 35.0% | |
| ! | ATGCACTTGATGATCTTCAT+AGG | - | chr7.3:6259262-6259281 | MS.gene06990:CDS | 35.0% |
| ! | TGTCGATAAACTTGCTTCTA+CGG | - | chr7.3:6259482-6259501 | MS.gene06990:CDS | 35.0% |
| ! | TTTTTCCTTCAAACCCATCA+AGG | + | chr7.3:6259389-6259408 | None:intergenic | 35.0% |
| !! | TGATGGGTTTGAAGGAAAAA+CGG | - | chr7.3:6259389-6259408 | MS.gene06990:CDS | 35.0% |
| AAATGGGAGATCTCAACACA+TGG | - | chr7.3:6259331-6259350 | MS.gene06990:CDS | 40.0% | |
| AATGAAGACACTTGCCTTGA+TGG | - | chr7.3:6259372-6259391 | MS.gene06990:CDS | 40.0% | |
| ATGAAGACACTTGCCTTGAT+GGG | - | chr7.3:6259373-6259392 | MS.gene06990:CDS | 40.0% | |
| GATGATCTTCATAGGTCACT+TGG | - | chr7.3:6259270-6259289 | MS.gene06990:CDS | 40.0% | |
| ! | GTCGATAAACTTGCTTCTAC+GGG | - | chr7.3:6259483-6259502 | MS.gene06990:CDS | 40.0% |
| ! | TAAACTTGCTTCTACGGGTT+TGG | - | chr7.3:6259488-6259507 | MS.gene06990:CDS | 40.0% |
| AGGAAGAACCCCAAGCAAAT+GGG | - | chr7.3:6259107-6259126 | MS.gene06990:CDS | 45.0% | |
| TGGAGAATTGTGCTAGTGTG+TGG | + | chr7.3:6259080-6259099 | None:intergenic | 45.0% | |
| ! | GTGTGTGGATGCAAAGGTTT+TGG | + | chr7.3:6259065-6259084 | None:intergenic | 45.0% |
| !! | ACTTGCCTTGATGGGTTTGA+AGG | - | chr7.3:6259381-6259400 | MS.gene06990:CDS | 45.0% |
| !! | ATAGGTCACTTGGTGTGCTT+AGG | - | chr7.3:6259280-6259299 | MS.gene06990:CDS | 45.0% |
| AGGAAGCTTGCAGTGTCACA+AGG | - | chr7.3:6259037-6259056 | MS.gene06990:CDS | 50.0% | |
| CAGGAAGAACCCCAAGCAAA+TGG | - | chr7.3:6259106-6259125 | MS.gene06990:CDS | 50.0% | |
| GCACAATTCTCCAACACAGC+AGG | - | chr7.3:6259087-6259106 | MS.gene06990:CDS | 50.0% | |
| GTGCTAGTGTGTGGATGCAA+AGG | + | chr7.3:6259071-6259090 | None:intergenic | 50.0% | |
| GCTTATCGTTACCGACACCC+CGG | + | chr7.3:6259139-6259158 | None:intergenic | 55.0% | |
| TGGGGTTCTTCCTGCTGTGT+TGG | + | chr7.3:6259100-6259119 | None:intergenic | 55.0% | |
| AAGCAAATGGGCACGTGCCG+GGG | - | chr7.3:6259119-6259138 | MS.gene06990:CDS | 60.0% | |
| CAAGCAAATGGGCACGTGCC+GGG | - | chr7.3:6259118-6259137 | MS.gene06990:CDS | 60.0% | |
| CCAAGCAAATGGGCACGTGC+CGG | - | chr7.3:6259117-6259136 | MS.gene06990:CDS | 60.0% | |
| CGGCACGTGCCCATTTGCTT+GGG | + | chr7.3:6259119-6259138 | None:intergenic | 60.0% | |
| GGCACGTGCCCATTTGCTTG+GGG | + | chr7.3:6259118-6259137 | None:intergenic | 60.0% | |
| CCGGCACGTGCCCATTTGCT+TGG | + | chr7.3:6259120-6259139 | None:intergenic | 65.0% | |
| ATGGGCACGTGCCGGGGTGT+CGG | - | chr7.3:6259125-6259144 | MS.gene06990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6258934 | 6259530 | 6258934 | ID=MS.gene06990 |
| chr7.3 | mRNA | 6258934 | 6259530 | 6258934 | ID=MS.gene06990.t1;Parent=MS.gene06990 |
| chr7.3 | exon | 6258934 | 6259530 | 6258934 | ID=MS.gene06990.t1.exon1;Parent=MS.gene06990.t1 |
| chr7.3 | CDS | 6258934 | 6259530 | 6258934 | ID=cds.MS.gene06990.t1;Parent=MS.gene06990.t1 |
| Gene Sequence |
| Protein sequence |
