Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20331.t1 | XP_013469326.1 | 96.8 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 1.00E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20331.t1 | Q2N2K1 | 72.9 | 310 | 75 | 3 | 1 | 309 | 1 | 302 | 7.4e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20331.t1 | A0A072VN17 | 96.8 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 7.5e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20331 | 0.847265 | 1.29E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene20331 | 0.838805 | 2.31E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene20331 | 0.848692 | 5.21E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene20331 | 0.886922 | 2.24E-72 | -1.69E-46 |
| MS.gene049320 | MS.gene20331 | 0.861688 | 8.61E-64 | -1.69E-46 |
| MS.gene04939 | MS.gene20331 | 0.804312 | 2.30E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene20331 | 0.814996 | 1.16E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene20331 | 0.897051 | 2.05E-76 | -1.69E-46 |
| MS.gene05010 | MS.gene20331 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene20331 | 0.885965 | 5.16E-72 | -1.69E-46 |
| MS.gene050165 | MS.gene20331 | 0.867534 | 1.28E-65 | -1.69E-46 |
| MS.gene050333 | MS.gene20331 | 0.85748 | 1.59E-62 | -1.69E-46 |
| MS.gene050353 | MS.gene20331 | -0.829372 | 5.34E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene20331 | 0.881308 | 2.67E-70 | -1.69E-46 |
| MS.gene050518 | MS.gene20331 | 0.84334 | 1.49E-58 | -1.69E-46 |
| MS.gene050577 | MS.gene20331 | 0.849116 | 3.98E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene20331 | 0.84691 | 1.61E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene20331 | 0.837882 | 4.00E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene20331 | 0.876759 | 1.08E-68 | -1.69E-46 |
| MS.gene050747 | MS.gene20331 | 0.8287 | 7.77E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene20331 | 0.82109 | 4.86E-53 | -1.69E-46 |
| MS.gene050781 | MS.gene20331 | 0.848832 | 4.77E-60 | -1.69E-46 |
| MS.gene050876 | MS.gene20331 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene05087 | MS.gene20331 | 0.826084 | 3.29E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene20331 | 0.826557 | 2.54E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene20331 | 0.865617 | 5.19E-65 | -1.69E-46 |
| MS.gene05100 | MS.gene20331 | 0.868636 | 5.64E-66 | -1.69E-46 |
| MS.gene051317 | MS.gene20331 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene20331 | 0.826963 | 2.03E-54 | -1.69E-46 |
| MS.gene051564 | MS.gene20331 | 0.812149 | 4.90E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene20331 | 0.84835 | 6.48E-60 | -1.69E-46 |
| MS.gene051810 | MS.gene20331 | 0.832772 | 7.81E-56 | -1.69E-46 |
| MS.gene051949 | MS.gene20331 | 0.810482 | 1.13E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene20331 | 0.824018 | 1.01E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene20331 | 0.802356 | 5.83E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene20331 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene20331 | 0.811467 | 6.90E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene20331 | 0.831299 | 1.81E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene20331 | 0.817536 | 3.13E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene20331 | 0.820109 | 8.16E-53 | -1.69E-46 |
| MS.gene052670 | MS.gene20331 | 0.835302 | 1.82E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene20331 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene20331 | 0.813102 | 3.03E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene20331 | 0.825528 | 4.46E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene20331 | 0.830105 | 3.54E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene20331 | 0.870473 | 1.42E-66 | -1.69E-46 |
| MS.gene053286 | MS.gene20331 | 0.876125 | 1.79E-68 | -1.69E-46 |
| MS.gene053322 | MS.gene20331 | 0.806247 | 9.02E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene20331 | 0.81497 | 1.17E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene20331 | 0.840556 | 8.10E-58 | -1.69E-46 |
| MS.gene053915 | MS.gene20331 | 0.801375 | 9.27E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene20331 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene20331 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene20331 | 0.860082 | 2.65E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene20331 | 0.858534 | 7.71E-63 | -1.69E-46 |
| MS.gene05470 | MS.gene20331 | 0.842433 | 2.59E-58 | -1.69E-46 |
| MS.gene054927 | MS.gene20331 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene20331 | 0.866714 | 2.33E-65 | -1.69E-46 |
| MS.gene055362 | MS.gene20331 | 0.886802 | 2.49E-72 | -1.69E-46 |
| MS.gene055499 | MS.gene20331 | 0.817538 | 3.13E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene20331 | 0.872854 | 2.31E-67 | -1.69E-46 |
| MS.gene055577 | MS.gene20331 | 0.839288 | 1.73E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene20331 | 0.810275 | 1.25E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene20331 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene20331 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene20331 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene20331 | 0.858713 | 6.82E-63 | -1.69E-46 |
| MS.gene056374 | MS.gene20331 | 0.835446 | 1.67E-56 | -1.69E-46 |
| MS.gene056409 | MS.gene20331 | 0.836128 | 1.12E-56 | -1.69E-46 |
| MS.gene056449 | MS.gene20331 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene056450 | MS.gene20331 | 0.808115 | 3.63E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene20331 | 0.819008 | 1.45E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene20331 | 0.837877 | 4.01E-57 | -1.69E-46 |
| MS.gene056550 | MS.gene20331 | -0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene056610 | MS.gene20331 | 0.835269 | 1.85E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene20331 | 0.870237 | 1.70E-66 | -1.69E-46 |
| MS.gene056692 | MS.gene20331 | 0.862004 | 6.89E-64 | -1.69E-46 |
| MS.gene057416 | MS.gene20331 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene20331 | 0.840428 | 8.75E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene20331 | 0.859058 | 5.38E-63 | -1.69E-46 |
| MS.gene05837 | MS.gene20331 | 0.807608 | 4.65E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene20331 | 0.865155 | 7.25E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene20331 | 0.872069 | 4.22E-67 | -1.69E-46 |
| MS.gene058773 | MS.gene20331 | 0.877367 | 6.65E-69 | -1.69E-46 |
| MS.gene058838 | MS.gene20331 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene20331 | 0.820635 | 6.18E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene20331 | 0.880307 | 6.11E-70 | -1.69E-46 |
| MS.gene059023 | MS.gene20331 | 0.85579 | 4.98E-62 | -1.69E-46 |
| MS.gene059029 | MS.gene20331 | 0.819468 | 1.14E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene20331 | 0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene059479 | MS.gene20331 | -0.818695 | 1.71E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene20331 | 0.891204 | 4.92E-74 | -1.69E-46 |
| MS.gene059718 | MS.gene20331 | 0.89157 | 3.52E-74 | -1.69E-46 |
| MS.gene059756 | MS.gene20331 | 0.86086 | 1.54E-63 | -1.69E-46 |
| MS.gene059801 | MS.gene20331 | 0.813552 | 2.42E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene20331 | 0.832943 | 7.08E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene20331 | 0.847612 | 1.04E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene20331 | 0.877474 | 6.11E-69 | -1.69E-46 |
| MS.gene06092 | MS.gene20331 | 0.838616 | 2.59E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene20331 | 0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene061150 | MS.gene20331 | 0.891343 | 4.33E-74 | -1.69E-46 |
| MS.gene061200 | MS.gene20331 | 0.805659 | 1.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20331.t1 | MTR_1g090913 | 96.764 | 309 | 7 | 1 | 1 | 309 | 1 | 306 | 0.0 | 598 |
| MS.gene20331.t1 | MTR_3g465120 | 46.396 | 222 | 118 | 1 | 86 | 307 | 81 | 301 | 1.71e-70 | 221 |
| MS.gene20331.t1 | MTR_4g015990 | 42.917 | 240 | 132 | 2 | 72 | 307 | 1 | 239 | 5.91e-68 | 212 |
| MS.gene20331.t1 | MTR_4g016040 | 44.976 | 209 | 114 | 1 | 94 | 302 | 27 | 234 | 2.32e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20331.t1 | AT5G04490 | 67.083 | 240 | 79 | 0 | 70 | 309 | 65 | 304 | 2.92e-117 | 340 |
| MS.gene20331.t1 | AT5G04490 | 70.787 | 178 | 52 | 0 | 70 | 247 | 65 | 242 | 6.31e-91 | 271 |
| MS.gene20331.t1 | AT5G58560 | 42.793 | 222 | 126 | 1 | 86 | 307 | 87 | 307 | 5.78e-66 | 209 |
Find 76 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAGCAATGCTTATATT+TGG | 0.177370 | 1.3:+63978091 | MS.gene20331:CDS |
| AATGCTTATATTTGGATTCT+TGG | 0.197393 | 1.3:+63978099 | MS.gene20331:CDS |
| TTTGGATTCTTGGTTTCAAT+TGG | 0.256377 | 1.3:+63978109 | MS.gene20331:CDS |
| GGTGCCACTGTTGGTGTTCT+TGG | 0.284632 | 1.3:+63977072 | MS.gene20331:CDS |
| CTCTCCAAGGTTATTAATAA+TGG | 0.286305 | 1.3:-63978469 | None:intergenic |
| GATATCATTGGTAGAAGATA+TGG | 0.303985 | 1.3:+63978025 | MS.gene20331:CDS |
| GAGGTGGTGGTGGTTGTTGC+CGG | 0.304454 | 1.3:-63976898 | None:intergenic |
| AAAGCAATCCTGATAATATA+TGG | 0.321784 | 1.3:-63977393 | None:intergenic |
| GAAATGGGGTACCTGAAAAT+TGG | 0.330597 | 1.3:-63977430 | None:intergenic |
| TTCTGTTCCACTAGTAACTA+TGG | 0.342085 | 1.3:+63978427 | MS.gene20331:CDS |
| TGTTAAGTGCTATTGTGTTC+TGG | 0.376561 | 1.3:+63977835 | MS.gene20331:CDS |
| TTACAAATCTTTCATCTAAA+CGG | 0.377409 | 1.3:-63977002 | None:intergenic |
| AAACTGGTCCATATATTATC+AGG | 0.380119 | 1.3:+63977385 | MS.gene20331:CDS |
| TTCTGGCGTGAATCTCCAAT+TGG | 0.390436 | 1.3:+63977852 | MS.gene20331:CDS |
| GTGGGTTTGTTCCAAGGAAA+AGG | 0.392595 | 1.3:-63976925 | None:intergenic |
| TCCAATTGGGGTTGTTGCAT+TGG | 0.393868 | 1.3:+63977866 | MS.gene20331:CDS |
| TTGGATTCTTGGTTTCAATT+GGG | 0.404183 | 1.3:+63978110 | MS.gene20331:CDS |
| ATTAGATCTTGAGCATTTGC+AGG | 0.415465 | 1.3:-63977039 | None:intergenic |
| ACAGTGTCGTTTGTTGTTGT+GGG | 0.430951 | 1.3:-63976943 | None:intergenic |
| TTTGGTGAATGGTCTCTCCT+TGG | 0.432501 | 1.3:+63977630 | MS.gene20331:CDS |
| TCTGGCGTGAATCTCCAATT+GGG | 0.433764 | 1.3:+63977853 | MS.gene20331:CDS |
| CTCCGTGCACCGCCGTTCAC+CGG | 0.435055 | 1.3:+63976879 | MS.gene20331:CDS |
| GACAGTGTCGTTTGTTGTTG+TGG | 0.438491 | 1.3:-63976944 | None:intergenic |
| AGGAAAAGGGTTGGAGGTGG+TGG | 0.441202 | 1.3:-63976911 | None:intergenic |
| TCATCGACCACCTCAGTAAT+GGG | 0.442023 | 1.3:-63978398 | None:intergenic |
| GCCAATGCAACAACCCCAAT+TGG | 0.443959 | 1.3:-63977867 | None:intergenic |
| CGGCGGTGCACGGAGGAGAA+TGG | 0.444784 | 1.3:-63976871 | None:intergenic |
| GCAGGGTCTGAGCAGAAAAC+TGG | 0.450996 | 1.3:+63977369 | MS.gene20331:intron |
| CTCTCCTTGGTTACTGATCA+AGG | 0.451114 | 1.3:+63977643 | MS.gene20331:CDS |
| AAAAGGGTTGGAGGTGGTGG+TGG | 0.452390 | 1.3:-63976908 | None:intergenic |
| CAGCAAAGTAACGAGCTTCA+AGG | 0.476437 | 1.3:-63977576 | None:intergenic |
| TTAATATCCCAACATAATAG+AGG | 0.477271 | 1.3:-63977812 | None:intergenic |
| GAGGTCCCCTCTATTATGTT+GGG | 0.482902 | 1.3:+63977805 | MS.gene20331:CDS |
| TGGTGGTTGTTGCCGGTGAA+CGG | 0.484199 | 1.3:-63976891 | None:intergenic |
| GACATGTGCAGTTTGATTTG+TGG | 0.485754 | 1.3:+63978318 | MS.gene20331:CDS |
| GTTGTTGTGGGTTTGTTCCA+AGG | 0.487703 | 1.3:-63976931 | None:intergenic |
| CTGTACTACTATTCAGCTCT+AGG | 0.488201 | 1.3:+63978296 | MS.gene20331:CDS |
| CTAGGTGTGGCTGATATCAT+TGG | 0.492948 | 1.3:+63978013 | MS.gene20331:intron |
| TGCCGGTGAACGGCGGTGCA+CGG | 0.494482 | 1.3:-63976881 | None:intergenic |
| GTCATCGACCACCTCAGTAA+TGG | 0.501122 | 1.3:-63978399 | None:intergenic |
| GCCACTGTTGGTGTTCTTGG+CGG | 0.506473 | 1.3:+63977075 | MS.gene20331:CDS |
| TGGGTTTGTTCCAAGGAAAA+GGG | 0.511191 | 1.3:-63976924 | None:intergenic |
| AGCAAAGTAACGAGCTTCAA+GGG | 0.523609 | 1.3:-63977575 | None:intergenic |
| AGAGGTCCCCTCTATTATGT+TGG | 0.534169 | 1.3:+63977804 | MS.gene20331:CDS |
| TTTGTTCCAAGGAAAAGGGT+TGG | 0.535640 | 1.3:-63976920 | None:intergenic |
| GTTCCAAGGAAAAGGGTTGG+AGG | 0.535671 | 1.3:-63976917 | None:intergenic |
| GCAATGATGTGTGGAGGGGA+TGG | 0.536528 | 1.3:+63977888 | MS.gene20331:CDS |
| GGAGAATGGAGAGAGGTGAG+AGG | 0.540624 | 1.3:-63976857 | None:intergenic |
| AAAGACACAAAAGCAACTCT+TGG | 0.543465 | 1.3:-63978350 | None:intergenic |
| CCAAGGAAAAGGGTTGGAGG+TGG | 0.543991 | 1.3:-63976914 | None:intergenic |
| ATATCATTGGTAGAAGATAT+GGG | 0.547601 | 1.3:+63978026 | MS.gene20331:CDS |
| ATCAAATCTGTGACTAGGAA+AGG | 0.549956 | 1.3:+63977670 | MS.gene20331:CDS |
| CACAATGTTGGTGCCACTGT+TGG | 0.565061 | 1.3:+63977063 | MS.gene20331:CDS |
| TAATATCCCAACATAATAGA+GGG | 0.574859 | 1.3:-63977811 | None:intergenic |
| TTAGATCTTGAGCATTTGCA+GGG | 0.579429 | 1.3:-63977038 | None:intergenic |
| CGACCACCTCAGTAATGGGT+AGG | 0.581372 | 1.3:-63978394 | None:intergenic |
| CCCTACAGAGAATTGCTAAG+AGG | 0.586996 | 1.3:+63977786 | MS.gene20331:intron |
| GTCACTGCCATAGTTACTAG+TGG | 0.589305 | 1.3:-63978434 | None:intergenic |
| GTTGCATTGGCAATGATGTG+TGG | 0.589491 | 1.3:+63977879 | MS.gene20331:CDS |
| CAAGATCTAATCCACAATGT+TGG | 0.596614 | 1.3:+63977051 | MS.gene20331:CDS |
| CAACAGTGGCACCAACATTG+TGG | 0.602793 | 1.3:-63977062 | None:intergenic |
| GTCCCTACCCATTACTGAGG+TGG | 0.610171 | 1.3:+63978391 | MS.gene20331:CDS |
| CATTGGCAATGATGTGTGGA+GGG | 0.615220 | 1.3:+63977883 | MS.gene20331:CDS |
| GACTCATCAAATCTGTGACT+AGG | 0.615495 | 1.3:+63977665 | MS.gene20331:CDS |
| GACCACCTCAGTAATGGGTA+GGG | 0.617402 | 1.3:-63978393 | None:intergenic |
| GCCGCCAAGAACACCAACAG+TGG | 0.621865 | 1.3:-63977076 | None:intergenic |
| CGGACACTACGATGTACTGA+AGG | 0.643227 | 1.3:-63976982 | None:intergenic |
| GCATTGGCAATGATGTGTGG+AGG | 0.648439 | 1.3:+63977882 | MS.gene20331:CDS |
| CTGGCGTGAATCTCCAATTG+GGG | 0.652571 | 1.3:+63977854 | MS.gene20331:CDS |
| GGAGTCCCTACCCATTACTG+AGG | 0.664036 | 1.3:+63978388 | MS.gene20331:CDS |
| GAGTCCTTGATCAGTAACCA+AGG | 0.675558 | 1.3:-63977647 | None:intergenic |
| GCACGGAGGAGAATGGAGAG+AGG | 0.679387 | 1.3:-63976864 | None:intergenic |
| CGGTGAACGGCGGTGCACGG+AGG | 0.687859 | 1.3:-63976878 | None:intergenic |
| ATTGGCAATGATGTGTGGAG+GGG | 0.694210 | 1.3:+63977884 | MS.gene20331:CDS |
| TGGTTGTTGCCGGTGAACGG+CGG | 0.696223 | 1.3:-63976888 | None:intergenic |
| AATATCCCAACATAATAGAG+GGG | 0.697645 | 1.3:-63977810 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTCTTTATTCATTTTTT+TGG | + | chr1.3:63977712-63977731 | MS.gene20331:intron | 15.0% |
| !!! | TTTGGTTCAATTTAAATTTT+GGG | + | chr1.3:63977277-63977296 | MS.gene20331:intron | 15.0% |
| !!! | TTTTGGTTCAATTTAAATTT+TGG | + | chr1.3:63977276-63977295 | MS.gene20331:intron | 15.0% |
| !! | ATTTATCTAAATCACAGAAA+TGG | - | chr1.3:63977449-63977468 | None:intergenic | 20.0% |
| !! | TTAATCAACATTGAATTTGA+TGG | + | chr1.3:63977987-63978006 | MS.gene20331:intron | 20.0% |
| !! | TTACAAATCTTTCATCTAAA+CGG | - | chr1.3:63977005-63977024 | None:intergenic | 20.0% |
| !! | TTTATCTAAATCACAGAAAT+GGG | - | chr1.3:63977448-63977467 | None:intergenic | 20.0% |
| !!! | GTCAATTCATAAATTTTTCT+TGG | - | chr1.3:63977236-63977255 | None:intergenic | 20.0% |
| !!! | TTCATTTTTTTGGCATTATT+TGG | + | chr1.3:63977722-63977741 | MS.gene20331:intron | 20.0% |
| ! | AAAAAAATTGCAAAGCTTCT+AGG | - | chr1.3:63977969-63977988 | None:intergenic | 25.0% |
| ! | AAAAAATTGCAAAGCTTCTA+GGG | - | chr1.3:63977968-63977987 | None:intergenic | 25.0% |
| ! | AAACATCATTGATCAAGTAA+TGG | + | chr1.3:63977140-63977159 | MS.gene20331:intron | 25.0% |
| ! | AAAGCAATCCTGATAATATA+TGG | - | chr1.3:63977396-63977415 | None:intergenic | 25.0% |
| ! | AAGACATTTGATACTTACTT+TGG | - | chr1.3:63977700-63977719 | None:intergenic | 25.0% |
| ! | AATGCTTATATTTGGATTCT+TGG | + | chr1.3:63978099-63978118 | MS.gene20331:CDS | 25.0% |
| ! | AGGAAAGGTTTAAGAAATAA+AGG | - | chr1.3:63977937-63977956 | None:intergenic | 25.0% |
| ! | ATATCATTGGTAGAAGATAT+GGG | + | chr1.3:63978026-63978045 | MS.gene20331:CDS | 25.0% |
| ! | GAACCAAAACAAGTAAAAAA+TGG | - | chr1.3:63977265-63977284 | None:intergenic | 25.0% |
| ! | TAATATCCCAACATAATAGA+GGG | - | chr1.3:63977814-63977833 | None:intergenic | 25.0% |
| ! | TATTTCTTAAACCTTTCCTA+GGG | + | chr1.3:63977938-63977957 | MS.gene20331:intron | 25.0% |
| ! | TTAATATCCCAACATAATAG+AGG | - | chr1.3:63977815-63977834 | None:intergenic | 25.0% |
| ! | TTACAACCAAAAAAAGAGTT+GGG | + | chr1.3:63978063-63978082 | MS.gene20331:CDS | 25.0% |
| ! | TTATCTAAATCACAGAAATG+GGG | - | chr1.3:63977447-63977466 | None:intergenic | 25.0% |
| ! | TTCCTTATAAGGAAAGTTTA+AGG | + | chr1.3:63977501-63977520 | MS.gene20331:intron | 25.0% |
| !! | TCTTTGCTTTATTCCTTATA+AGG | + | chr1.3:63977490-63977509 | MS.gene20331:intron | 25.0% |
| !! | TTATTTCTTAAACCTTTCCT+AGG | + | chr1.3:63977937-63977956 | MS.gene20331:intron | 25.0% |
| !!! | AATGTTTTGGTGTTAATGTT+AGG | + | chr1.3:63977543-63977562 | MS.gene20331:intron | 25.0% |
| !!! | ATTGCTTTGTTTGAATGTTT+TGG | + | chr1.3:63977530-63977549 | MS.gene20331:intron | 25.0% |
| !!! | GATCCATTTTTTACTTGTTT+TGG | + | chr1.3:63977259-63977278 | MS.gene20331:intron | 25.0% |
| AAACTGGTCCATATATTATC+AGG | + | chr1.3:63977385-63977404 | MS.gene20331:CDS | 30.0% | |
| AATATCCCAACATAATAGAG+GGG | - | chr1.3:63977813-63977832 | None:intergenic | 30.0% | |
| AGCATAGCAATGCTTATATT+TGG | + | chr1.3:63978091-63978110 | MS.gene20331:CDS | 30.0% | |
| AGTGTGAAAATCTATCTACT+TGG | - | chr1.3:63978245-63978264 | None:intergenic | 30.0% | |
| CTTACAACCAAAAAAAGAGT+TGG | + | chr1.3:63978062-63978081 | MS.gene20331:CDS | 30.0% | |
| GATATCATTGGTAGAAGATA+TGG | + | chr1.3:63978025-63978044 | MS.gene20331:CDS | 30.0% | |
| TCATTGATCAAGTAATGGTT+TGG | + | chr1.3:63977145-63977164 | MS.gene20331:intron | 30.0% | |
| TGCCTTAAACTTTCCTTATA+AGG | - | chr1.3:63977506-63977525 | None:intergenic | 30.0% | |
| TTGGATTCTTGGTTTCAATT+GGG | + | chr1.3:63978110-63978129 | MS.gene20331:CDS | 30.0% | |
| TTTGGATTCTTGGTTTCAAT+TGG | + | chr1.3:63978109-63978128 | MS.gene20331:CDS | 30.0% | |
| ! | ATAAGGAAAGTTTAAGGCAT+TGG | + | chr1.3:63977507-63977526 | MS.gene20331:intron | 30.0% |
| ! | CATTGAATTTGATGGTTACT+AGG | + | chr1.3:63977995-63978014 | MS.gene20331:intron | 30.0% |
| !! | AAAAAGTGCTGTTGAAAAAG+TGG | - | chr1.3:63978157-63978176 | None:intergenic | 30.0% |
| !! | TTTTTGGCATTATTTGGTCA+TGG | + | chr1.3:63977728-63977747 | MS.gene20331:intron | 30.0% |
| !!! | ATTATCAGGATTGCTTTTTC+TGG | + | chr1.3:63977399-63977418 | MS.gene20331:CDS | 30.0% |
| !!! | CAACTCTTTTTTTGGTTGTA+AGG | - | chr1.3:63978064-63978083 | None:intergenic | 30.0% |
| !!! | TGTGAATTTTTTGAGGCTTT+TGG | + | chr1.3:63977612-63977631 | MS.gene20331:CDS | 30.0% |
| !!! | TTCCTCTTGTGAATTTTTTG+AGG | + | chr1.3:63977605-63977624 | MS.gene20331:CDS | 30.0% |
| AAAGACACAAAAGCAACTCT+TGG | - | chr1.3:63978353-63978372 | None:intergenic | 35.0% | |
| AAATTTGTGTCACATGGTGA+TGG | + | chr1.3:63977347-63977366 | MS.gene20331:intron | 35.0% | |
| AGCCTCAAAAAATTCACAAG+AGG | - | chr1.3:63977610-63977629 | None:intergenic | 35.0% | |
| ATCAAATCTGTGACTAGGAA+AGG | + | chr1.3:63977670-63977689 | MS.gene20331:CDS | 35.0% | |
| ATTAGATCTTGAGCATTTGC+AGG | - | chr1.3:63977042-63977061 | None:intergenic | 35.0% | |
| CAAGATCTAATCCACAATGT+TGG | + | chr1.3:63977051-63977070 | MS.gene20331:CDS | 35.0% | |
| TGCATGCAAATTGCAAAGTA+AGG | - | chr1.3:63977197-63977216 | None:intergenic | 35.0% | |
| TGCTGATATTTATTGCATGC+AGG | + | chr1.3:63978270-63978289 | MS.gene20331:intron | 35.0% | |
| TTAGATCTTGAGCATTTGCA+GGG | - | chr1.3:63977041-63977060 | None:intergenic | 35.0% | |
| TTCTGTTCCACTAGTAACTA+TGG | + | chr1.3:63978427-63978446 | MS.gene20331:CDS | 35.0% | |
| ! | AATTTGATGGTTACTAGGTG+TGG | + | chr1.3:63978000-63978019 | MS.gene20331:intron | 35.0% |
| ! | TGTTAAGTGCTATTGTGTTC+TGG | + | chr1.3:63977835-63977854 | MS.gene20331:CDS | 35.0% |
| !! | GCTTTGAAATTTGTGTCACA+TGG | + | chr1.3:63977341-63977360 | MS.gene20331:intron | 35.0% |
| !!! | AGTTGCTTTTGTGTCTTTTG+TGG | + | chr1.3:63978355-63978374 | MS.gene20331:CDS | 35.0% |
| !!! | GATTGCTTTTTCTGGTTTCA+TGG | + | chr1.3:63977407-63977426 | MS.gene20331:CDS | 35.0% |
| !!! | TTTTTGAGGCTTTTGGTGAA+TGG | + | chr1.3:63977619-63977638 | MS.gene20331:CDS | 35.0% |
| AACCAAAAAAAGAGTTGGGC+TGG | + | chr1.3:63978067-63978086 | MS.gene20331:CDS | 40.0% | |
| ACCTCTTAGCAATTCTCTGT+AGG | - | chr1.3:63977790-63977809 | None:intergenic | 40.0% | |
| AGCAAAGTAACGAGCTTCAA+GGG | - | chr1.3:63977578-63977597 | None:intergenic | 40.0% | |
| CCTCTTAGCAATTCTCTGTA+GGG | - | chr1.3:63977789-63977808 | None:intergenic | 40.0% | |
| CTGTACTACTATTCAGCTCT+AGG | + | chr1.3:63978296-63978315 | MS.gene20331:CDS | 40.0% | |
| GACTCATCAAATCTGTGACT+AGG | + | chr1.3:63977665-63977684 | MS.gene20331:CDS | 40.0% | |
| TTTGTTCCAAGGAAAAGGGT+TGG | - | chr1.3:63976923-63976942 | None:intergenic | 40.0% | |
| ! | GAAATGGGGTACCTGAAAAT+TGG | - | chr1.3:63977433-63977452 | None:intergenic | 40.0% |
| ! | TGGGTTTGTTCCAAGGAAAA+GGG | - | chr1.3:63976927-63976946 | None:intergenic | 40.0% |
| ! | TGGTTTCATGGCCAATTTTC+AGG | + | chr1.3:63977419-63977438 | MS.gene20331:CDS | 40.0% |
| !! | ACAGTGTCGTTTGTTGTTGT+GGG | - | chr1.3:63976946-63976965 | None:intergenic | 40.0% |
| !! | GACATGTGCAGTTTGATTTG+TGG | + | chr1.3:63978318-63978337 | MS.gene20331:CDS | 40.0% |
| !!! | TACCAGCCCAACTCTTTTTT+TGG | - | chr1.3:63978072-63978091 | None:intergenic | 40.0% |
| AGAGGTCCCCTCTATTATGT+TGG | + | chr1.3:63977804-63977823 | MS.gene20331:CDS | 45.0% | |
| ATTGGCAATGATGTGTGGAG+GGG | + | chr1.3:63977884-63977903 | MS.gene20331:CDS | 45.0% | |
| CAGCAAAGTAACGAGCTTCA+AGG | - | chr1.3:63977579-63977598 | None:intergenic | 45.0% | |
| CATTGGCAATGATGTGTGGA+GGG | + | chr1.3:63977883-63977902 | MS.gene20331:CDS | 45.0% | |
| CCCTACAGAGAATTGCTAAG+AGG | + | chr1.3:63977786-63977805 | MS.gene20331:intron | 45.0% | |
| CTAGGTGTGGCTGATATCAT+TGG | + | chr1.3:63978013-63978032 | MS.gene20331:intron | 45.0% | |
| CTCTCCTTGGTTACTGATCA+AGG | + | chr1.3:63977643-63977662 | MS.gene20331:CDS | 45.0% | |
| GAGGTCCCCTCTATTATGTT+GGG | + | chr1.3:63977805-63977824 | MS.gene20331:CDS | 45.0% | |
| GAGTCCTTGATCAGTAACCA+AGG | - | chr1.3:63977650-63977669 | None:intergenic | 45.0% | |
| GTCACTGCCATAGTTACTAG+TGG | - | chr1.3:63978437-63978456 | None:intergenic | 45.0% | |
| TCATCGACCACCTCAGTAAT+GGG | - | chr1.3:63978401-63978420 | None:intergenic | 45.0% | |
| TCCAATTGGGGTTGTTGCAT+TGG | + | chr1.3:63977866-63977885 | MS.gene20331:CDS | 45.0% | |
| TCTGGCGTGAATCTCCAATT+GGG | + | chr1.3:63977853-63977872 | MS.gene20331:CDS | 45.0% | |
| TGGCATTATTTGGTCATGGC+AGG | + | chr1.3:63977732-63977751 | MS.gene20331:intron | 45.0% | |
| TTCTGGCGTGAATCTCCAAT+TGG | + | chr1.3:63977852-63977871 | MS.gene20331:CDS | 45.0% | |
| TTTGGTGAATGGTCTCTCCT+TGG | + | chr1.3:63977630-63977649 | MS.gene20331:CDS | 45.0% | |
| ! | GTGGGTTTGTTCCAAGGAAA+AGG | - | chr1.3:63976928-63976947 | None:intergenic | 45.0% |
| ! | GTTGCATTGGCAATGATGTG+TGG | + | chr1.3:63977879-63977898 | MS.gene20331:CDS | 45.0% |
| ! | GTTGTTGTGGGTTTGTTCCA+AGG | - | chr1.3:63976934-63976953 | None:intergenic | 45.0% |
| ! | TGTGTCTTTTGTGGCAACAG+TGG | + | chr1.3:63978364-63978383 | MS.gene20331:CDS | 45.0% |
| !! | GACAGTGTCGTTTGTTGTTG+TGG | - | chr1.3:63976947-63976966 | None:intergenic | 45.0% |
| !!! | GTTTATTTTTTATTTTTTAA+TGG | + | chr1.3:63977304-63977323 | MS.gene20331:intron | 5.0% |
| CAACAGTGGCACCAACATTG+TGG | - | chr1.3:63977065-63977084 | None:intergenic | 50.0% | |
| CGGACACTACGATGTACTGA+AGG | - | chr1.3:63976985-63977004 | None:intergenic | 50.0% | |
| CTGGCGTGAATCTCCAATTG+GGG | + | chr1.3:63977854-63977873 | MS.gene20331:CDS | 50.0% | |
| GCCAATGCAACAACCCCAAT+TGG | - | chr1.3:63977870-63977889 | None:intergenic | 50.0% | |
| GTCATCGACCACCTCAGTAA+TGG | - | chr1.3:63978402-63978421 | None:intergenic | 50.0% | |
| GTTCCAAGGAAAAGGGTTGG+AGG | - | chr1.3:63976920-63976939 | None:intergenic | 50.0% | |
| TCTAGGGAAAGCCCTAGGAA+AGG | - | chr1.3:63977952-63977971 | None:intergenic | 50.0% | |
| ! | AAGCTTCTAGGGAAAGCCCT+AGG | - | chr1.3:63977957-63977976 | None:intergenic | 50.0% |
| ! | GCATTGGCAATGATGTGTGG+AGG | + | chr1.3:63977882-63977901 | MS.gene20331:CDS | 50.0% |
| ! | GTCTTTTGTGGCAACAGTGG+TGG | + | chr1.3:63978367-63978386 | MS.gene20331:CDS | 50.0% |
| !! | CACAATGTTGGTGCCACTGT+TGG | + | chr1.3:63977063-63977082 | MS.gene20331:CDS | 50.0% |
| !! | GACCACCTCAGTAATGGGTA+GGG | - | chr1.3:63978396-63978415 | None:intergenic | 50.0% |
| !! | TGTGTCACATGGTGATGGCA+GGG | + | chr1.3:63977352-63977371 | MS.gene20331:intron | 50.0% |
| !! | TTGTGTCACATGGTGATGGC+AGG | + | chr1.3:63977351-63977370 | MS.gene20331:intron | 50.0% |
| AGGAAAAGGGTTGGAGGTGG+TGG | - | chr1.3:63976914-63976933 | None:intergenic | 55.0% | |
| CCAAGGAAAAGGGTTGGAGG+TGG | - | chr1.3:63976917-63976936 | None:intergenic | 55.0% | |
| GCAATGATGTGTGGAGGGGA+TGG | + | chr1.3:63977888-63977907 | MS.gene20331:CDS | 55.0% | |
| GCAGGGTCTGAGCAGAAAAC+TGG | + | chr1.3:63977369-63977388 | MS.gene20331:intron | 55.0% | |
| GGAGAATGGAGAGAGGTGAG+AGG | - | chr1.3:63976860-63976879 | None:intergenic | 55.0% | |
| GGAGTCCCTACCCATTACTG+AGG | + | chr1.3:63978388-63978407 | MS.gene20331:CDS | 55.0% | |
| GTCCCTACCCATTACTGAGG+TGG | + | chr1.3:63978391-63978410 | MS.gene20331:CDS | 55.0% | |
| TGGTGGTTGTTGCCGGTGAA+CGG | - | chr1.3:63976894-63976913 | None:intergenic | 55.0% | |
| ! | AAAAGGGTTGGAGGTGGTGG+TGG | - | chr1.3:63976911-63976930 | None:intergenic | 55.0% |
| ! | CCACCTCCAACCCTTTTCCT+TGG | + | chr1.3:63976914-63976933 | MS.gene20331:CDS | 55.0% |
| ! | GCCACTGTTGGTGTTCTTGG+CGG | + | chr1.3:63977075-63977094 | MS.gene20331:CDS | 55.0% |
| !! | CGACCACCTCAGTAATGGGT+AGG | - | chr1.3:63978397-63978416 | None:intergenic | 55.0% |
| !! | GGTGCCACTGTTGGTGTTCT+TGG | + | chr1.3:63977072-63977091 | MS.gene20331:CDS | 55.0% |
| GCACGGAGGAGAATGGAGAG+AGG | - | chr1.3:63976867-63976886 | None:intergenic | 60.0% | |
| GCCGCCAAGAACACCAACAG+TGG | - | chr1.3:63977079-63977098 | None:intergenic | 60.0% | |
| TGGTTGTTGCCGGTGAACGG+CGG | - | chr1.3:63976891-63976910 | None:intergenic | 60.0% | |
| !! | GAGGTGGTGGTGGTTGTTGC+CGG | - | chr1.3:63976901-63976920 | None:intergenic | 60.0% |
| CGGCGGTGCACGGAGGAGAA+TGG | - | chr1.3:63976874-63976893 | None:intergenic | 70.0% | |
| CTCCGTGCACCGCCGTTCAC+CGG | + | chr1.3:63976879-63976898 | MS.gene20331:CDS | 70.0% | |
| TGCCGGTGAACGGCGGTGCA+CGG | - | chr1.3:63976884-63976903 | None:intergenic | 70.0% | |
| CGGTGAACGGCGGTGCACGG+AGG | - | chr1.3:63976881-63976900 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 63976844 | 63978478 | 63976844 | ID=MS.gene20331 |
| chr1.3 | mRNA | 63976844 | 63978478 | 63976844 | ID=MS.gene20331.t1;Parent=MS.gene20331 |
| chr1.3 | exon | 63976844 | 63977155 | 63976844 | ID=MS.gene20331.t1.exon1;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63976844 | 63977155 | 63976844 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| chr1.3 | exon | 63977373 | 63977440 | 63977373 | ID=MS.gene20331.t1.exon2;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63977373 | 63977440 | 63977373 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| chr1.3 | exon | 63977570 | 63977701 | 63977570 | ID=MS.gene20331.t1.exon3;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63977570 | 63977701 | 63977570 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| chr1.3 | exon | 63977794 | 63977909 | 63977794 | ID=MS.gene20331.t1.exon4;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63977794 | 63977909 | 63977794 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| chr1.3 | exon | 63978017 | 63978131 | 63978017 | ID=MS.gene20331.t1.exon5;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63978017 | 63978131 | 63978017 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| chr1.3 | exon | 63978292 | 63978478 | 63978292 | ID=MS.gene20331.t1.exon6;Parent=MS.gene20331.t1 |
| chr1.3 | CDS | 63978292 | 63978478 | 63978292 | ID=cds.MS.gene20331.t1;Parent=MS.gene20331.t1 |
| Gene Sequence |
| Protein sequence |
