AlfalfaGEDB | MS.gene24476

M. sativa cultivar XinJiangDaYe / MS.gene24476

KEGG: K22450
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24476.t1	XP_024631841.1	94.3	194	9	2	2	195	1	192	7.90E-99	369.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24476.t1	Q6Z1Y6	62.1	140	50	2	50	187	50	188	3.3e-45	183.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24476.t1	G7ICB6	94.3	194	9	2	2	195	1	192	5.7e-99	369.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24476.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene24476	0.821235	4.50E-53	-1.69E-46
MS.gene049217	MS.gene24476	0.826492	2.63E-54	-1.69E-46
MS.gene049222	MS.gene24476	0.845331	4.34E-59	-1.69E-46
MS.gene049232	MS.gene24476	0.824533	7.67E-54	-1.69E-46
MS.gene049285	MS.gene24476	0.839	2.06E-57	-1.69E-46
MS.gene049320	MS.gene24476	0.840777	7.09E-58	-1.69E-46
MS.gene049396	MS.gene24476	0.805487	1.30E-49	-1.69E-46
MS.gene049427	MS.gene24476	0.822116	2.81E-53	-1.69E-46
MS.gene049609	MS.gene24476	0.851586	8.06E-61	-1.69E-46
MS.gene049633	MS.gene24476	0.853268	2.67E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24476.t1	MTR_1g018030	94.330	194	9	2	2	195	1	192	1.61e-134	374
MS.gene24476.t1	MTR_7g073990	42.282	149	75	2	47	187	97	242	4.56e-31	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24476.t1	AT1G26220	60.591	203	65	4	2	195	1	197	9.18e-81	239
MS.gene24476.t1	AT1G32070	41.985	131	60	1	76	190	127	257	9.06e-29	108
MS.gene24476.t1	AT1G32070	41.667	132	60	1	76	190	126	257	2.82e-28	106
MS.gene24476.t1	AT1G32070	41.667	132	60	1	76	190	127	258	2.88e-28	106

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Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTGAGGTTTCGTGGT+GGG	0.635153	1.1:+4636138	None:intergenic
AACAAAGTATTCGTAGCAGT+AGG	0.566118	1.1:-4636008	MS.gene24476:CDS
AACAACAACATCCCATATTA+TGG	0.310068	1.1:+4635851	None:intergenic
AAGTTAAGTCGTAGGGAGGA+TGG	0.419412	1.1:+4636179	None:intergenic
ACAAAGTATTCGTAGCAGTA+GGG	0.561588	1.1:-4636007	MS.gene24476:CDS
ACCATTCCACGAATACCATC+AGG	0.547694	1.1:+4635681	None:intergenic
ACTCGAGCACACTGACTCAA+TGG	0.522170	1.1:-4635949	MS.gene24476:CDS
AGCACACTGACTCAATGGTA+TGG	0.558828	1.1:-4635944	MS.gene24476:CDS
AGCCCAAGCCCTTGAAACGA+AGG	0.590595	1.1:+4635825	None:intergenic
AGGCTTATGAGGGATCTTGT+AGG	0.549706	1.1:-4635783	MS.gene24476:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAACATCCCATATTA+TGG	+	chr1.1:4636017-4636036	None:intergenic	30.0%
ATACTTTGTTAAGTGCTTCT+AGG	+	chr1.1:4635847-4635866	None:intergenic	30.0%
ATTTGAAGAAGTTAAGTCGT+AGG	+	chr1.1:4635697-4635716	None:intergenic	30.0%
TTTGAAGAAGTTAAGTCGTA+GGG	+	chr1.1:4635696-4635715	None:intergenic	30.0%
AAAAACGAGGTTTCATTCTC+CGG	-	chr1.1:4635801-4635820	MS.gene24476:CDS	35.0%
CTCAGAGTAAAGAGCAATAT+TGG	+	chr1.1:4636119-4636138	None:intergenic	35.0%
TTGTTGATCCTTCGTTTCAA+GGG	-	chr1.1:4636032-4636051	MS.gene24476:CDS	35.0%
ATATTGAGAGTGGGTAGTCT+AGG	+	chr1.1:4635766-4635785	None:intergenic	40.0%
CGATAAAAGCCAAGAACTCT+TGG	+	chr1.1:4636142-4636161	None:intergenic	40.0%
GAAGAAGTCGCAGAATAATG+CGG	-	chr1.1:4635952-4635971	MS.gene24476:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	4635650	4636237	4635650	ID=MS.gene24476
chr1.1	mRNA	4635650	4636237	4635650	ID=MS.gene24476.t1;Parent=MS.gene24476
chr1.1	exon	4635650	4636237	4635650	ID=MS.gene24476.t1.exon1;Parent=MS.gene24476.t1
chr1.1	CDS	4635650	4636237	4635650	ID=cds.MS.gene24476.t1;Parent=MS.gene24476.t1

Gene Sequence

>MS.gene24476

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACCCACCACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACACTAGAAAAACGAGGTTTCATTCTCCGGAGAACCTCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCATTGCACTCGAGCACACTGACTCAATGGTATGGATACAACAGAAGAAGTCGCAGAATAATGCGGTTGCATTTGCAAGAGCTACTGGTGATGGTGTTTTCAATGCCATAATATGGGATGTTGTTGTTGATCCTTCGTTTCAAGGGCTTGGGCTAGGGAAAGCTGTTGTGGAGAGGCTTATGAGGGATCTTGTAGGAAGAGGGATTACCAATATTGCTCTTTACTCTGAGCCAAGAGTTCTTGGCTTTTATCGACCTTTGGGTTTTGTTGCTGATCCTGATGGTATTCGTGGAATGGTTTACTCGACAAAAAACAAAAGAAAAAAATAG

Protein sequence

>MS.gene24476.t1

MLLLRGNIYAPLPSSLRLNFFKSQTHPPRNLTISCQASLDYPLSISDETLEKRGFILRRTSEGLNLEALNKVFVAVGFPRRDPEKIRIALEHTDSMVWIQQKKSQNNAVAFARATGDGVFNAIIWDVVVDPSFQGLGLGKAVVERLMRDLVGRGITNIALYSEPRVLGFYRPLGFVADPDGIRGMVYSTKNKRKK