Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24476.t1 | XP_024631841.1 | 94.3 | 194 | 9 | 2 | 2 | 195 | 1 | 192 | 7.90E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24476.t1 | Q6Z1Y6 | 62.1 | 140 | 50 | 2 | 50 | 187 | 50 | 188 | 3.3e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24476.t1 | G7ICB6 | 94.3 | 194 | 9 | 2 | 2 | 195 | 1 | 192 | 5.7e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24476.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene24476 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene24476 | 0.826492 | 2.63E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene24476 | 0.845331 | 4.34E-59 | -1.69E-46 |
| MS.gene049232 | MS.gene24476 | 0.824533 | 7.67E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene24476 | 0.839 | 2.06E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene24476 | 0.840777 | 7.09E-58 | -1.69E-46 |
| MS.gene049396 | MS.gene24476 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene24476 | 0.822116 | 2.81E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene24476 | 0.851586 | 8.06E-61 | -1.69E-46 |
| MS.gene049633 | MS.gene24476 | 0.853268 | 2.67E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene24476 | 0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene24476 | 0.824879 | 6.36E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene24476 | 0.810496 | 1.12E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene24476 | 0.814072 | 1.86E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene24476 | 0.83938 | 1.64E-57 | -1.69E-46 |
| MS.gene050538 | MS.gene24476 | 0.811444 | 6.98E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene24476 | 0.856391 | 3.32E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene24476 | 0.827127 | 1.86E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene24476 | 0.857214 | 1.90E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene24476 | 0.83682 | 7.48E-57 | -1.69E-46 |
| MS.gene050747 | MS.gene24476 | 0.843536 | 1.32E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene24476 | 0.861944 | 7.18E-64 | -1.69E-46 |
| MS.gene05080 | MS.gene24476 | 0.865015 | 8.02E-65 | -1.69E-46 |
| MS.gene050950 | MS.gene24476 | 0.851674 | 7.61E-61 | -1.69E-46 |
| MS.gene050986 | MS.gene24476 | 0.848328 | 6.57E-60 | -1.69E-46 |
| MS.gene05105 | MS.gene24476 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene24476 | 0.806547 | 7.80E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene24476 | 0.823218 | 1.56E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene24476 | 0.824103 | 9.67E-54 | -1.69E-46 |
| MS.gene051617 | MS.gene24476 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene24476 | 0.830031 | 3.69E-55 | -1.69E-46 |
| MS.gene052164 | MS.gene24476 | 0.801018 | 1.10E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene24476 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene24476 | 0.808609 | 2.85E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene24476 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene24476 | 0.823274 | 1.51E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene24476 | 0.824847 | 6.47E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene24476 | 0.832347 | 9.96E-56 | -1.69E-46 |
| MS.gene053207 | MS.gene24476 | 0.847448 | 1.15E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene24476 | 0.854899 | 9.05E-62 | -1.69E-46 |
| MS.gene053286 | MS.gene24476 | 0.84811 | 7.55E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene24476 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene24476 | 0.817127 | 3.87E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene24476 | 0.876345 | 1.50E-68 | -1.69E-46 |
| MS.gene053626 | MS.gene24476 | 0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene24476 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene24476 | 0.806364 | 8.53E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene24476 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene24476 | 0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene24476 | 0.85558 | 5.74E-62 | -1.69E-46 |
| MS.gene054927 | MS.gene24476 | 0.827843 | 1.25E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene24476 | 0.823665 | 1.23E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene24476 | 0.810275 | 1.25E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene24476 | 0.813652 | 2.30E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene24476 | 0.82219 | 2.70E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene24476 | 0.832536 | 8.94E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene24476 | 0.80091 | 1.15E-48 | -1.69E-46 |
| MS.gene055647 | MS.gene24476 | 0.864525 | 1.14E-64 | -1.69E-46 |
| MS.gene055722 | MS.gene24476 | 0.851748 | 7.25E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene24476 | 0.830816 | 2.37E-55 | -1.69E-46 |
| MS.gene055941 | MS.gene24476 | 0.810272 | 1.25E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene24476 | 0.821524 | 3.86E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene24476 | 0.827889 | 1.22E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene24476 | 0.821374 | 4.18E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene24476 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene24476 | 0.810265 | 1.26E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene24476 | 0.836159 | 1.10E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene24476 | 0.812478 | 4.16E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene24476 | 0.851194 | 1.04E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene24476 | 0.855088 | 7.98E-62 | -1.69E-46 |
| MS.gene057129 | MS.gene24476 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene24476 | 0.873508 | 1.39E-67 | -1.69E-46 |
| MS.gene057416 | MS.gene24476 | 0.857001 | 2.20E-62 | -1.69E-46 |
| MS.gene057734 | MS.gene24476 | 0.813145 | 2.97E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene24476 | 0.824944 | 6.13E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene24476 | 0.82731 | 1.68E-54 | -1.69E-46 |
| MS.gene058130 | MS.gene24476 | 0.828112 | 1.08E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene24476 | 0.818809 | 1.62E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene24476 | 0.846781 | 1.75E-59 | -1.69E-46 |
| MS.gene058544 | MS.gene24476 | 0.836251 | 1.04E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene24476 | 0.812056 | 5.14E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene24476 | 0.834516 | 2.87E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene24476 | 0.836782 | 7.65E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene24476 | 0.81522 | 1.03E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene24476 | 0.81056 | 1.08E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene24476 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene05913 | MS.gene24476 | 0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene059181 | MS.gene24476 | 0.805902 | 1.07E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene24476 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene059455 | MS.gene24476 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene24476 | 0.824224 | 9.06E-54 | -1.69E-46 |
| MS.gene059711 | MS.gene24476 | 0.84052 | 8.28E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene24476 | 0.839125 | 1.91E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene24476 | 0.824883 | 6.34E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene24476 | 0.80868 | 2.75E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene24476 | 0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene24476 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene24476 | 0.807937 | 3.96E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene24476 | 0.84874 | 5.05E-60 | -1.69E-46 |
| MS.gene060837 | MS.gene24476 | 0.815873 | 7.39E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene24476 | 0.828419 | 9.09E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene24476 | 0.804536 | 2.06E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene24476 | 0.816458 | 5.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24476.t1 | MTR_1g018030 | 94.330 | 194 | 9 | 2 | 2 | 195 | 1 | 192 | 1.61e-134 | 374 |
| MS.gene24476.t1 | MTR_7g073990 | 42.282 | 149 | 75 | 2 | 47 | 187 | 97 | 242 | 4.56e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24476.t1 | AT1G26220 | 60.591 | 203 | 65 | 4 | 2 | 195 | 1 | 197 | 9.18e-81 | 239 |
| MS.gene24476.t1 | AT1G32070 | 41.985 | 131 | 60 | 1 | 76 | 190 | 127 | 257 | 9.06e-29 | 108 |
| MS.gene24476.t1 | AT1G32070 | 41.667 | 132 | 60 | 1 | 76 | 190 | 126 | 257 | 2.82e-28 | 106 |
| MS.gene24476.t1 | AT1G32070 | 41.667 | 132 | 60 | 1 | 76 | 190 | 127 | 258 | 2.88e-28 | 106 |
Find 50 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTTTGTTAAGTGCTTCT+AGG | 0.216082 | 1.1:+4636021 | None:intergenic |
| TACTCTGAGCCAAGAGTTCT+TGG | 0.233326 | 1.1:-4635735 | MS.gene24476:CDS |
| GATCCTTCGTTTCAAGGGCT+TGG | 0.286511 | 1.1:-4635828 | MS.gene24476:CDS |
| AACAACAACATCCCATATTA+TGG | 0.310068 | 1.1:+4635851 | None:intergenic |
| GTTGTTGATCCTTCGTTTCA+AGG | 0.353170 | 1.1:-4635834 | MS.gene24476:CDS |
| CTCAGAGTAAAGAGCAATAT+TGG | 0.361910 | 1.1:+4635749 | None:intergenic |
| ATCCTTCGTTTCAAGGGCTT+GGG | 0.363113 | 1.1:-4635827 | MS.gene24476:CDS |
| TCGTTTCAAGGGCTTGGGCT+AGG | 0.372956 | 1.1:-4635822 | MS.gene24476:CDS |
| CTGTTGTGGAGAGGCTTATG+AGG | 0.408843 | 1.1:-4635794 | MS.gene24476:CDS |
| AAGTTAAGTCGTAGGGAGGA+TGG | 0.419412 | 1.1:+4636179 | None:intergenic |
| CGATAAAAGCCAAGAACTCT+TGG | 0.431331 | 1.1:+4635726 | None:intergenic |
| TAGGCTTGCTTGACAAGAAA+TGG | 0.442809 | 1.1:+4636121 | None:intergenic |
| CGTTTCAAGGGCTTGGGCTA+GGG | 0.454257 | 1.1:-4635821 | MS.gene24476:CDS |
| TTGTTGATCCTTCGTTTCAA+GGG | 0.483590 | 1.1:-4635833 | MS.gene24476:CDS |
| GTTGCATTTGCAAGAGCTAC+TGG | 0.489343 | 1.1:-4635891 | MS.gene24476:CDS |
| TTAACCCCTCTGAGGTTCTC+CGG | 0.494474 | 1.1:+4636045 | None:intergenic |
| TTTGAAGAAGTTAAGTCGTA+GGG | 0.496530 | 1.1:+4636172 | None:intergenic |
| CAAGAAATGGTGAGGTTTCG+TGG | 0.507526 | 1.1:+4636134 | None:intergenic |
| TGAGGGATCTTGTAGGAAGA+GGG | 0.520334 | 1.1:-4635776 | MS.gene24476:CDS |
| ACTCGAGCACACTGACTCAA+TGG | 0.522170 | 1.1:-4635949 | MS.gene24476:CDS |
| ATTTGAAGAAGTTAAGTCGT+AGG | 0.522993 | 1.1:+4636171 | None:intergenic |
| TGGGCTAGGGAAAGCTGTTG+TGG | 0.530219 | 1.1:-4635808 | MS.gene24476:CDS |
| ATGAGGGATCTTGTAGGAAG+AGG | 0.534453 | 1.1:-4635777 | MS.gene24476:CDS |
| AGTCGTAGGGAGGATGGAAG+AGG | 0.540218 | 1.1:+4636185 | None:intergenic |
| ATATTGAGAGTGGGTAGTCT+AGG | 0.541441 | 1.1:+4636102 | None:intergenic |
| ACCATTCCACGAATACCATC+AGG | 0.547694 | 1.1:+4635681 | None:intergenic |
| AGGCTTATGAGGGATCTTGT+AGG | 0.549706 | 1.1:-4635783 | MS.gene24476:CDS |
| AGCACACTGACTCAATGGTA+TGG | 0.558828 | 1.1:-4635944 | MS.gene24476:CDS |
| ACAAAGTATTCGTAGCAGTA+GGG | 0.561588 | 1.1:-4636007 | MS.gene24476:CDS |
| TCCTGATGGTATTCGTGGAA+TGG | 0.563938 | 1.1:-4635682 | MS.gene24476:CDS |
| AACAAAGTATTCGTAGCAGT+AGG | 0.566118 | 1.1:-4636008 | MS.gene24476:CDS |
| GAAGAAGTTAAGTCGTAGGG+AGG | 0.570827 | 1.1:+4636175 | None:intergenic |
| GCTGATCCTGATGGTATTCG+TGG | 0.578470 | 1.1:-4635687 | MS.gene24476:CDS |
| AGCCCAAGCCCTTGAAACGA+AGG | 0.590595 | 1.1:+4635825 | None:intergenic |
| GTTTCGTCGGATATTGAGAG+TGG | 0.590666 | 1.1:+4636092 | None:intergenic |
| ATTCTCCGGAGAACCTCAGA+GGG | 0.594468 | 1.1:-4636050 | MS.gene24476:CDS |
| TTGCTTGACAAGAAATGGTG+AGG | 0.596575 | 1.1:+4636126 | None:intergenic |
| TTCTAGGTTTAACCCCTCTG+AGG | 0.598354 | 1.1:+4636037 | None:intergenic |
| GATAATATGCTGCTCTTACG+TGG | 0.618724 | 1.1:-4636221 | None:intergenic |
| TGTTGTGGAGAGGCTTATGA+GGG | 0.625783 | 1.1:-4635793 | MS.gene24476:CDS |
| TAGGGAAAGCTGTTGTGGAG+AGG | 0.629346 | 1.1:-4635803 | MS.gene24476:CDS |
| AAATGGTGAGGTTTCGTGGT+GGG | 0.635153 | 1.1:+4636138 | None:intergenic |
| TTTGCAAGAGCTACTGGTGA+TGG | 0.636078 | 1.1:-4635885 | MS.gene24476:CDS |
| TTTCGTCGGATATTGAGAGT+GGG | 0.646235 | 1.1:+4636093 | None:intergenic |
| CATTCTCCGGAGAACCTCAG+AGG | 0.650384 | 1.1:-4636051 | MS.gene24476:CDS |
| TCGTAGCAGTAGGGTTTCCG+CGG | 0.663293 | 1.1:-4635998 | MS.gene24476:CDS |
| GGATCAGCAACAAAACCCAA+AGG | 0.674227 | 1.1:+4635702 | None:intergenic |
| GAAGAAGTCGCAGAATAATG+CGG | 0.693298 | 1.1:-4635913 | MS.gene24476:CDS |
| GAAATGGTGAGGTTTCGTGG+TGG | 0.768689 | 1.1:+4636137 | None:intergenic |
| TTCTCCGGAGAACCTCAGAG+GGG | 0.790280 | 1.1:-4636049 | MS.gene24476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTTCAATGCCATAATAT+GGG | - | chr1.1:4636003-4636022 | MS.gene24476:CDS | 25.0% |
| AACAACAACATCCCATATTA+TGG | + | chr1.1:4636017-4636036 | None:intergenic | 30.0% | |
| ATACTTTGTTAAGTGCTTCT+AGG | + | chr1.1:4635847-4635866 | None:intergenic | 30.0% | |
| ATTTGAAGAAGTTAAGTCGT+AGG | + | chr1.1:4635697-4635716 | None:intergenic | 30.0% | |
| TTTGAAGAAGTTAAGTCGTA+GGG | + | chr1.1:4635696-4635715 | None:intergenic | 30.0% | |
| ! | GTGTTTTCAATGCCATAATA+TGG | - | chr1.1:4636002-4636021 | MS.gene24476:CDS | 30.0% |
| AAAAACGAGGTTTCATTCTC+CGG | - | chr1.1:4635801-4635820 | MS.gene24476:CDS | 35.0% | |
| CTCAGAGTAAAGAGCAATAT+TGG | + | chr1.1:4636119-4636138 | None:intergenic | 35.0% | |
| TTGTTGATCCTTCGTTTCAA+GGG | - | chr1.1:4636032-4636051 | MS.gene24476:CDS | 35.0% | |
| ! | AACAAAGTATTCGTAGCAGT+AGG | - | chr1.1:4635857-4635876 | MS.gene24476:CDS | 35.0% |
| ! | ACAAAGTATTCGTAGCAGTA+GGG | - | chr1.1:4635858-4635877 | MS.gene24476:CDS | 35.0% |
| !! | TCGTTTTTCTAGTGTTTCGT+CGG | + | chr1.1:4635789-4635808 | None:intergenic | 35.0% |
| ATATTGAGAGTGGGTAGTCT+AGG | + | chr1.1:4635766-4635785 | None:intergenic | 40.0% | |
| CGATAAAAGCCAAGAACTCT+TGG | + | chr1.1:4636142-4636161 | None:intergenic | 40.0% | |
| GAAGAAGTCGCAGAATAATG+CGG | - | chr1.1:4635952-4635971 | MS.gene24476:CDS | 40.0% | |
| GACGAAACACTAGAAAAACG+AGG | - | chr1.1:4635788-4635807 | MS.gene24476:CDS | 40.0% | |
| GTTGTTGATCCTTCGTTTCA+AGG | - | chr1.1:4636031-4636050 | MS.gene24476:CDS | 40.0% | |
| TTGCTTGACAAGAAATGGTG+AGG | + | chr1.1:4635742-4635761 | None:intergenic | 40.0% | |
| TTTCGTCGGATATTGAGAGT+GGG | + | chr1.1:4635775-4635794 | None:intergenic | 40.0% | |
| ! | AGTGCAATGCGTATTTTCTC+AGG | + | chr1.1:4635899-4635918 | None:intergenic | 40.0% |
| ! | GTGCAATGCGTATTTTCTCA+GGG | + | chr1.1:4635898-4635917 | None:intergenic | 40.0% |
| ! | TAGGCTTGCTTGACAAGAAA+TGG | + | chr1.1:4635747-4635766 | None:intergenic | 40.0% |
| !! | CTTGGCTTTTATCGACCTTT+GGG | - | chr1.1:4636148-4636167 | MS.gene24476:CDS | 40.0% |
| !! | TCTTGGCTTTTATCGACCTT+TGG | - | chr1.1:4636147-4636166 | MS.gene24476:CDS | 40.0% |
| AAATGGTGAGGTTTCGTGGT+GGG | + | chr1.1:4635730-4635749 | None:intergenic | 45.0% | |
| AAGTTAAGTCGTAGGGAGGA+TGG | + | chr1.1:4635689-4635708 | None:intergenic | 45.0% | |
| ACCATTCCACGAATACCATC+AGG | + | chr1.1:4636187-4636206 | None:intergenic | 45.0% | |
| AGGCTTATGAGGGATCTTGT+AGG | - | chr1.1:4636082-4636101 | MS.gene24476:CDS | 45.0% | |
| ATCCTTCGTTTCAAGGGCTT+GGG | - | chr1.1:4636038-4636057 | MS.gene24476:CDS | 45.0% | |
| ATGAGGGATCTTGTAGGAAG+AGG | - | chr1.1:4636088-4636107 | MS.gene24476:CDS | 45.0% | |
| CAAGAAATGGTGAGGTTTCG+TGG | + | chr1.1:4635734-4635753 | None:intergenic | 45.0% | |
| GAAGAAGTTAAGTCGTAGGG+AGG | + | chr1.1:4635693-4635712 | None:intergenic | 45.0% | |
| GGATCAGCAACAAAACCCAA+AGG | + | chr1.1:4636166-4636185 | None:intergenic | 45.0% | |
| GTTGCATTTGCAAGAGCTAC+TGG | - | chr1.1:4635974-4635993 | MS.gene24476:CDS | 45.0% | |
| GTTTCGTCGGATATTGAGAG+TGG | + | chr1.1:4635776-4635795 | None:intergenic | 45.0% | |
| TACTCTGAGCCAAGAGTTCT+TGG | - | chr1.1:4636130-4636149 | MS.gene24476:CDS | 45.0% | |
| TCCTGATGGTATTCGTGGAA+TGG | - | chr1.1:4636183-4636202 | MS.gene24476:CDS | 45.0% | |
| TGAGGGATCTTGTAGGAAGA+GGG | - | chr1.1:4636089-4636108 | MS.gene24476:CDS | 45.0% | |
| TGTTGTGGAGAGGCTTATGA+GGG | - | chr1.1:4636072-4636091 | MS.gene24476:CDS | 45.0% | |
| TTCTAGGTTTAACCCCTCTG+AGG | + | chr1.1:4635831-4635850 | None:intergenic | 45.0% | |
| TTTGCAAGAGCTACTGGTGA+TGG | - | chr1.1:4635980-4635999 | MS.gene24476:CDS | 45.0% | |
| !! | AGCACACTGACTCAATGGTA+TGG | - | chr1.1:4635921-4635940 | MS.gene24476:CDS | 45.0% |
| !!! | GGTTTTGTTGCTGATCCTGA+TGG | - | chr1.1:4636169-4636188 | MS.gene24476:CDS | 45.0% |
| ATTCTCCGGAGAACCTCAGA+GGG | - | chr1.1:4635815-4635834 | MS.gene24476:CDS | 50.0% | |
| CTGTTGTGGAGAGGCTTATG+AGG | - | chr1.1:4636071-4636090 | MS.gene24476:CDS | 50.0% | |
| GAAATGGTGAGGTTTCGTGG+TGG | + | chr1.1:4635731-4635750 | None:intergenic | 50.0% | |
| GATCCTTCGTTTCAAGGGCT+TGG | - | chr1.1:4636037-4636056 | MS.gene24476:CDS | 50.0% | |
| GCTGATCCTGATGGTATTCG+TGG | - | chr1.1:4636178-4636197 | MS.gene24476:CDS | 50.0% | |
| TAGGGAAAGCTGTTGTGGAG+AGG | - | chr1.1:4636062-4636081 | MS.gene24476:CDS | 50.0% | |
| !! | ACTCGAGCACACTGACTCAA+TGG | - | chr1.1:4635916-4635935 | MS.gene24476:CDS | 50.0% |
| !! | TTAACCCCTCTGAGGTTCTC+CGG | + | chr1.1:4635823-4635842 | None:intergenic | 50.0% |
| AGCCCAAGCCCTTGAAACGA+AGG | + | chr1.1:4636043-4636062 | None:intergenic | 55.0% | |
| AGTCGTAGGGAGGATGGAAG+AGG | + | chr1.1:4635683-4635702 | None:intergenic | 55.0% | |
| CATTCTCCGGAGAACCTCAG+AGG | - | chr1.1:4635814-4635833 | MS.gene24476:CDS | 55.0% | |
| CGTTTCAAGGGCTTGGGCTA+GGG | - | chr1.1:4636044-4636063 | MS.gene24476:CDS | 55.0% | |
| TCGTAGCAGTAGGGTTTCCG+CGG | - | chr1.1:4635867-4635886 | MS.gene24476:CDS | 55.0% | |
| TCGTTTCAAGGGCTTGGGCT+AGG | - | chr1.1:4636043-4636062 | MS.gene24476:CDS | 55.0% | |
| TTCTCCGGAGAACCTCAGAG+GGG | - | chr1.1:4635816-4635835 | MS.gene24476:CDS | 55.0% | |
| ! | TGGGCTAGGGAAAGCTGTTG+TGG | - | chr1.1:4636057-4636076 | MS.gene24476:CDS | 55.0% |
| ! | ATTTTCTCAGGGTCGCGCCG+CGG | + | chr1.1:4635887-4635906 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4635650 | 4636237 | 4635650 | ID=MS.gene24476 |
| chr1.1 | mRNA | 4635650 | 4636237 | 4635650 | ID=MS.gene24476.t1;Parent=MS.gene24476 |
| chr1.1 | exon | 4635650 | 4636237 | 4635650 | ID=MS.gene24476.t1.exon1;Parent=MS.gene24476.t1 |
| chr1.1 | CDS | 4635650 | 4636237 | 4635650 | ID=cds.MS.gene24476.t1;Parent=MS.gene24476.t1 |
| Gene Sequence |
| Protein sequence |
