AlfalfaGEDB | MS.gene25693

M. sativa cultivar XinJiangDaYe / MS.gene25693

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0008168 GO:0008757 GO:0009507 GO:0009536 GO:0016740 GO:0016741 GO:0030785 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: PF00856.31 PF09273.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25693.t1	XP_003601528.1	97.2	494	14	0	1	494	4	497	3.50E-276	960.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25693.t1	P94026	28.1	417	266	18	69	471	62	458	6.0e-27	123.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25693.t1	G7J8U8	97.2	494	14	0	1	494	4	497	2.5e-276	960.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25693.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene25693	0.813839	2.09E-51	-1.69E-46
MS.gene049170	MS.gene25693	0.820116	8.13E-53	-1.69E-46
MS.gene049284	MS.gene25693	0.821019	5.04E-53	-1.69E-46
MS.gene049351	MS.gene25693	0.80375	3.00E-49	-1.69E-46
MS.gene049356	MS.gene25693	0.803163	3.97E-49	-1.69E-46
MS.gene049427	MS.gene25693	0.815872	7.40E-52	-1.69E-46
MS.gene049661	MS.gene25693	0.813427	2.57E-51	-1.69E-46
MS.gene049662	MS.gene25693	0.819385	1.19E-52	-1.69E-46
MS.gene050301	MS.gene25693	0.893378	6.65E-75	-1.69E-46
MS.gene050397	MS.gene25693	0.805068	1.60E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25693.t1	MTR_3g082690	97.166	494	14	0	1	494	4	497	0.0	995
MS.gene25693.t1	MTR_6g023320	28.846	312	195	9	62	351	65	371	2.61e-26	112
MS.gene25693.t1	MTR_4g082305	27.451	459	288	19	40	475	37	473	3.06e-26	112
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	5.75e-22	97.4
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	6.36e-22	98.2
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	6.65e-22	98.6
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	6.93e-22	98.2
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	7.56e-22	97.4
MS.gene25693.t1	MTR_1g115980	30.709	254	160	9	93	343	64	304	8.09e-22	98.2
MS.gene25693.t1	MTR_4g128240	23.381	278	205	7	57	330	231	504	8.09e-18	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25693.t1	AT3G07670	72.379	496	122	4	14	494	9	504	0.0	721
MS.gene25693.t1	AT3G07670	78.962	366	77	0	129	494	1	366	0.0	595
MS.gene25693.t1	AT5G14260	28.797	316	198	8	62	355	78	388	7.41e-30	121
MS.gene25693.t1	AT5G14260	28.797	316	198	8	62	355	78	388	1.72e-29	121
MS.gene25693.t1	AT5G14260	28.797	316	198	8	62	355	78	388	1.72e-29	121
MS.gene25693.t1	AT5G14260	28.797	316	198	8	62	355	78	388	1.72e-29	121
MS.gene25693.t1	AT1G14030	27.123	424	274	19	62	471	47	449	9.29e-25	107
MS.gene25693.t1	AT3G55080	29.091	330	192	13	30	343	11	314	3.46e-24	105
MS.gene25693.t1	AT3G55080	30.242	248	146	9	105	343	1	230	1.89e-21	96.7
MS.gene25693.t1	AT3G55080	30.242	248	146	9	105	343	1	230	1.89e-21	96.7

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Find 114 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTCAGTTCCAGAT+TGG	0.424118	3.3:+69442826	MS.gene25693:CDS
AAAAGTAGGAATAAGAGTGG+TGG	0.668503	3.3:-69441915	None:intergenic
AAAATACAACAAGTTCTTAC+AGG	0.366598	3.3:+69445632	MS.gene25693:CDS
AAAGAATGCATTGGTTCCTT+GGG	0.460470	3.3:+69444706	MS.gene25693:CDS
AAAGGAAGAGTTTACAGAAT+CGG	0.427143	3.3:-69442224	None:intergenic
AAAGGCTTGAAAATCTTTAA+TGG	0.210155	3.3:+69446002	MS.gene25693:CDS
AAAGGGAATTGTCTTTACGA+CGG	0.683033	3.3:+69444867	MS.gene25693:CDS
AAAGTTGATGTTGGTGAGAG+AGG	0.560244	3.3:+69442130	MS.gene25693:CDS
AAATAAAACTACCTCGAAAA+AGG	0.280033	3.3:+69445539	MS.gene25693:CDS
AACCATACTCACTTCTTTAT+TGG	0.118450	3.3:+69442934	MS.gene25693:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATTCAGTTCCAGAT+TGG	+	chr3.3:69442826-69442845	MS.gene25693:CDS	30.0%
AAAGGAAGAGTTTACAGAAT+CGG	-	chr3.3:69442227-69442246	None:intergenic	30.0%
AACCATACTCACTTCTTTAT+TGG	+	chr3.3:69442934-69442953	MS.gene25693:CDS	30.0%
AAGAAATCAATTGCAGTTTG+TGG	-	chr3.3:69445049-69445068	None:intergenic	30.0%
AATAGTTTCCATCAATGATG+AGG	-	chr3.3:69442014-69442033	None:intergenic	30.0%
AATATAAGCCCATCCTAAAA+TGG	+	chr3.3:69443267-69443286	MS.gene25693:intron	30.0%
AATTAAGAGGAAGAACTTAG+TGG	-	chr3.3:69443479-69443498	None:intergenic	30.0%
AATTTCTGAACAAAGCTTCT+TGG	-	chr3.3:69442600-69442619	None:intergenic	30.0%
ACACAGGTGTTTATTTCATA+TGG	+	chr3.3:69445085-69445104	MS.gene25693:intron	30.0%
ACCAACATCAACTTTATCAA+TGG	-	chr3.3:69442125-69442144	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	69441878	69446046	69441878	ID=MS.gene25693
chr3.3	mRNA	69441878	69446046	69441878	ID=MS.gene25693.t1;Parent=MS.gene25693
chr3.3	exon	69441878	69442231	69441878	ID=MS.gene25693.t1.exon1;Parent=MS.gene25693.t1
chr3.3	CDS	69441878	69442231	69441878	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69442792	69442955	69442792	ID=MS.gene25693.t1.exon2;Parent=MS.gene25693.t1
chr3.3	CDS	69442792	69442955	69442792	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69444153	69444236	69444153	ID=MS.gene25693.t1.exon3;Parent=MS.gene25693.t1
chr3.3	CDS	69444153	69444236	69444153	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69444337	69444394	69444337	ID=MS.gene25693.t1.exon4;Parent=MS.gene25693.t1
chr3.3	CDS	69444337	69444394	69444337	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69444480	69444533	69444480	ID=MS.gene25693.t1.exon5;Parent=MS.gene25693.t1
chr3.3	CDS	69444480	69444533	69444480	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69444683	69444754	69444683	ID=MS.gene25693.t1.exon6;Parent=MS.gene25693.t1
chr3.3	CDS	69444683	69444754	69444683	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69444835	69444915	69444835	ID=MS.gene25693.t1.exon7;Parent=MS.gene25693.t1
chr3.3	CDS	69444835	69444915	69444835	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69445091	69445263	69445091	ID=MS.gene25693.t1.exon8;Parent=MS.gene25693.t1
chr3.3	CDS	69445091	69445263	69445091	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69445345	69445447	69445345	ID=MS.gene25693.t1.exon9;Parent=MS.gene25693.t1
chr3.3	CDS	69445345	69445447	69445345	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69445522	69445653	69445522	ID=MS.gene25693.t1.exon10;Parent=MS.gene25693.t1
chr3.3	CDS	69445522	69445653	69445522	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69445751	69445873	69445751	ID=MS.gene25693.t1.exon11;Parent=MS.gene25693.t1
chr3.3	CDS	69445751	69445873	69445751	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1
chr3.3	exon	69445960	69446046	69445960	ID=MS.gene25693.t1.exon12;Parent=MS.gene25693.t1
chr3.3	CDS	69445960	69446046	69445960	ID=cds.MS.gene25693.t1;Parent=MS.gene25693.t1

Gene Sequence

>MS.gene25693

ATGGTTGAAGCTTCAGGGATGATGATGTTCACCAACACCACCACTCTTATTCCTACTTTTAACCAAACAATTCACAAAACAACACATCTTGGATTCTCACGTAGAAACAATGCTCATTTTTCACTCTCTGCAACCTCATCATTGATGGAAACTATTCCTTGGGGATGTGAGAATGATTCAATTGAAAATTCATCTTCTCTTGAGAAATGGTTGTCTCAGTCTGGTCTTCCTTCTCAGAAGATGTCCATTGATAAAGTTGATGTTGGTGAGAGAGGACTTGTTGCTTTGAAGAATATTAGGAAAGGAGAGAAGCTTCTTTTTGTTCCTCCTGAACTTGTCATCACTCCCGATTCTGTAAACTCTTCCTTTCTTCTTCTCTTTATTTGTGGAAACAACTTGTGACATGTTTATATAAGTTTATTTTCGTAAGCTCTTCAAGAAGATAGCTTTGAAAACAGCTTATGGATTGACTTGTTTGATTTTATCTATTGGCATAAACACTTTTGAGACTATGAGATAATTTATGGAAACAGCTTATGGTATGTCCATAAGCATAGTGCATAGATAGATTATGAAAACGATTTGACTTTGTTATATCTTTTGTATAGAAATAGCTTATACATGCTTATGCTATAGGCACTTAATTAAGTTGTTTATCCAAACAGGGCCTCATAGACAGTTATGTGACGATCACCACCATTTTAGTTTATTAATTCAATCCAAGAAGCTTTGTTCAGAAATTAGAATAATACAAGCAAATTATACAAGTATTATGCTGTCGGTATCAACACTCGACAACATTGCTTTATTCAATCCATGCTAAAATTGATGCTTAATGATCAACCTTCTAAACTTGATTTGAATATCTTGTGTTCTGGTGTTTATGATTTTGTTTGGGGTATTTTGGTTATTAGGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTTCCAGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTGTCATGAAATCTTCCAGATGGTTCAGTTATATATCGGCTTTACCTCGTCAACCATACTCACTTCTTTATTGGTACTTGAATTCAATTGCTCTTATCATGAATTATTTTGCGTGTTTATATTGGGAAGAATTGGAGAAGTGAGTATTGATGAGCAAGAAATTAAAATTAGTAGTTGAAATGCTTTGTTACCTTGCTAGGGAGAATGTGAGATAAATCAAATTGAGACTATTTTACAATAATTCACCAGGGTTTTAAAAAAGGATCGAAGTAACAGTTGGCTGCGTCACGATCCTTGATATTGCAGAGAATGCAGTCAAATGTGGCCTCAATCGCGGTCAGCTGCGGCTTCGACAACAACAAAAAAAAAAAACTGAATGTCACTAATATAAGCCCATCCTAAAATGGTACAAAAGTGAAGACAAAATTAAAATATCTCACGTTATAACAAGCCTTTTAAACTATAATTTCAATAGAAAAAACTAAAGGTGGTTTATACTTGCTATTTTCTTTTGGTTACTTTTCATTTCCTTCATCTATATCCGTACAAGAGAGGTGTTTCTCTTTTTGTTCTCTGATTTCTCAATTTCATTCCCACTAAGTTCTTCCTCTTAATTTCAGTTTCAAGCAAAAAAATCTTCAATGGACTTTACTTCTTCATTCTATCAATGAAAAAAGAGCAATGTTATTTGAACGTCTAAAAATCAACAACTATTTGACAACGGTATAAAATACACCGTTTATAACTATTATTTACGTGACTATGAGAGAGAGGGAGAGAGAATGACGCAGTACGGAAGCGTAGGGTTAGCAAGCGCTAAACCTGGATAGAAAAGAGCAAGTTTGCAAGCGACAAACTTGTGAAAATAGGGTTGCAAGCGACAAACCTATCAAAATAAGGGTTCCGGAATCCACCAGAAATTGAGAGAAAATCTCGAATATTATTAATGAATGAAAAAGTGTGCCTCTTAGGCTACATAAGTTCTGCTTATATAGTGAAAGAAATAACAAACCCGTGGGTCAAAATAAAATAAAACGTAATAATAATAGAAAGTTCTAGAAAATTATTAAGATTTGGTTAAAATAAAATACTATAAAATTACTAAGAAAGCCCTCCTACATCAGAGAAACAGCTAATTAAAAGATGAAATAGTACCAATACGGTATCTTTAGACGGTGTTAGACAACCATAAAGTTGTCAACATAACATTTCTCATAAAAAAAGGGTCTTTCTCAAAATTTTCCTATACAGTTCATTTCTTTCATTTCAGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACGTATGGACCGATCATTTGTACCTAATATATCTACTGTGCTTTCTTGATTGAATAATCCCATGTTTTTCAATAACTAGCAAACTTCCCATTTGTTCTCCAGATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTAATTACATCACATTGAACAGGATGAGAATGTAGTTTCAGAAAGTTCATAGTGAATCTGAATCTGTTATTTGTATGGCTTTCAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTGAGTCAATCTGGTAGATAAAATGAAACAAAATTATATTCTGTTATTTTTCAATCATTTCATTCAACAAGACTTAGTTTTGCTGTTTCATATTTGAGAGAAGTGGCTGATTGTCAGAACATATAATTCATGATATTGGCACCGTGTAGGTTCGATTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGACATGATGAATCATAGTTGTGAGGTAGGGTCTTTCCAAATAAAATCCCTAGCAAGTTTTCCTCAACAAGTTGAACTCTAATATATTTTTTGTCATTGGATTAGGTGGAGACTTTTTTGGATTATGATAAATCGTCAAAGGGAATTGTCTTTACGACGGATCGTCCCTATCAACCAGGTGAGCAGGTAATCATAAACTCAGATGGAATTTGTTAAATTAGATACATAGGATAAGACAGTTAAGTACCTTGGTAAATGAAATGCAAATTCGTTGTGCCTTGCCAAAGTGTTTATGACTCTAAAGTTAGCAATATTACCACAAACTGCAATTGATTTCTTTTTCTTGTATCAAATTACACAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCAGGGCGAGTACCTAAGTTTTCATAGTTATTATACCTTTCATGATTAAACTTGTTACTAACTTGTTTGTTCTATTCTTTTTCCAGATCTCAGTGTTTTCCTATAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGGTATGCCACTTACTATCTTTGTGAATTCTTTCTTCGAATATGTCGTATAACCAAATGTGTGATTCTTTGGACAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGCAAGGAAACACTTTAATAATGATTTCAAAAGCAATTTGGTAATCTCTAGCTAGCGAGCTAATCCTAGTTGTTTGTTTCCATTTGATCGATCCACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATGTAAGATTATAAAAGCACGTTATTTAATTTCTACTTACAAAGGTTGCTTGTCACTAAAGCTAACTCAGTTTGAATATTAATTGCAGATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATCGTTTCCAATGA

Protein sequence

>MS.gene25693.t1

MVEASGMMMFTNTTTLIPTFNQTIHKTTHLGFSRRNNAHFSLSATSSLMETIPWGCENDSIENSSSLEKWLSQSGLPSQKMSIDKVDVGERGLVALKNIRKGEKLLFVPPELVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASVMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNRFQ