Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38174.t1 | AAB41556.1 | 99 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 9.80E-176 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38174.t1 | P26690 | 84.2 | 310 | 49 | 0 | 3 | 312 | 4 | 313 | 1.5e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38174.t1 | Q40310 | 99.0 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 7.1e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene38174 | -0.821173 | 4.65E-53 | -1.69E-46 |
| MS.gene049312 | MS.gene38174 | 0.815247 | 1.02E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene38174 | -0.800394 | 1.47E-48 | -1.69E-46 |
| MS.gene05010 | MS.gene38174 | -0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene38174 | -0.825293 | 5.07E-54 | -1.69E-46 |
| MS.gene050363 | MS.gene38174 | 0.83433 | 3.19E-56 | -1.69E-46 |
| MS.gene050380 | MS.gene38174 | 0.867809 | 1.04E-65 | -1.69E-46 |
| MS.gene050381 | MS.gene38174 | 0.89319 | 7.91E-75 | -1.69E-46 |
| MS.gene050496 | MS.gene38174 | -0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene38174 | -0.839594 | 1.44E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene38174 | -0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene38174 | -0.840196 | 1.01E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene38174 | -0.8438 | 1.12E-58 | -1.69E-46 |
| MS.gene050883 | MS.gene38174 | 0.890658 | 8.07E-74 | -1.69E-46 |
| MS.gene050986 | MS.gene38174 | -0.810474 | 1.13E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene38174 | 0.849231 | 3.69E-60 | -1.69E-46 |
| MS.gene05141 | MS.gene38174 | 0.858879 | 6.08E-63 | -1.69E-46 |
| MS.gene051509 | MS.gene38174 | -0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene051560 | MS.gene38174 | -0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene38174 | 0.865756 | 4.69E-65 | -1.69E-46 |
| MS.gene052164 | MS.gene38174 | -0.83583 | 1.34E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene38174 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene38174 | -0.811392 | 7.16E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene38174 | -0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene38174 | -0.821506 | 3.89E-53 | -1.69E-46 |
| MS.gene053069 | MS.gene38174 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene38174 | -0.836054 | 1.17E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene38174 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene38174 | -0.817819 | 2.71E-52 | -1.69E-46 |
| MS.gene053549 | MS.gene38174 | 0.843199 | 1.62E-58 | -1.69E-46 |
| MS.gene053561 | MS.gene38174 | 0.814729 | 1.33E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene38174 | -0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene38174 | -0.826608 | 2.47E-54 | -1.69E-46 |
| MS.gene053826 | MS.gene38174 | 0.836512 | 8.96E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene38174 | -0.816959 | 4.23E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene38174 | -0.846272 | 2.41E-59 | -1.69E-46 |
| MS.gene054706 | MS.gene38174 | 0.811157 | 8.05E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene38174 | 0.846204 | 2.52E-59 | -1.69E-46 |
| MS.gene054954 | MS.gene38174 | -0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene055124 | MS.gene38174 | 0.863912 | 1.77E-64 | -1.69E-46 |
| MS.gene055139 | MS.gene38174 | 0.853954 | 1.70E-61 | -1.69E-46 |
| MS.gene055154 | MS.gene38174 | 0.837239 | 5.85E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene38174 | 0.816726 | 4.77E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene38174 | -0.806577 | 7.69E-50 | -1.69E-46 |
| MS.gene055401 | MS.gene38174 | 0.849478 | 3.15E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene38174 | -0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene38174 | -0.816165 | 6.37E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene38174 | -0.809312 | 2.01E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene38174 | -0.807021 | 6.19E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene38174 | -0.818237 | 2.18E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene38174 | 0.934638 | 2.96E-96 | -1.69E-46 |
| MS.gene056311 | MS.gene38174 | 0.903302 | 3.99E-79 | -1.69E-46 |
| MS.gene056313 | MS.gene38174 | 0.928687 | 2.03E-92 | -1.69E-46 |
| MS.gene056408 | MS.gene38174 | 0.851612 | 7.92E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene38174 | -0.836321 | 1.00E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene38174 | -0.812179 | 4.83E-51 | -1.69E-46 |
| MS.gene056647 | MS.gene38174 | 0.815968 | 7.04E-52 | -1.69E-46 |
| MS.gene056878 | MS.gene38174 | -0.821189 | 4.61E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene38174 | 0.859516 | 3.92E-63 | -1.69E-46 |
| MS.gene057086 | MS.gene38174 | -0.809364 | 1.96E-50 | -1.69E-46 |
| MS.gene057291 | MS.gene38174 | 0.805684 | 1.19E-49 | -1.69E-46 |
| MS.gene057293 | MS.gene38174 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene057473 | MS.gene38174 | 0.807542 | 4.80E-50 | -1.69E-46 |
| MS.gene057506 | MS.gene38174 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene38174 | 0.81627 | 6.03E-52 | -1.69E-46 |
| MS.gene058108 | MS.gene38174 | 0.830838 | 2.34E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene38174 | 0.854046 | 1.60E-61 | -1.69E-46 |
| MS.gene058111 | MS.gene38174 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene38174 | -0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene058170 | MS.gene38174 | 0.844256 | 8.46E-59 | -1.69E-46 |
| MS.gene058171 | MS.gene38174 | 0.87976 | 9.58E-70 | -1.69E-46 |
| MS.gene058172 | MS.gene38174 | 0.814757 | 1.31E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene38174 | 0.872076 | 4.20E-67 | -1.69E-46 |
| MS.gene058174 | MS.gene38174 | 0.840417 | 8.80E-58 | -1.69E-46 |
| MS.gene058175 | MS.gene38174 | 0.875396 | 3.19E-68 | -1.69E-46 |
| MS.gene058180 | MS.gene38174 | 0.842158 | 3.07E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene38174 | -0.830595 | 2.69E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene38174 | -0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene058493 | MS.gene38174 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene058494 | MS.gene38174 | 0.807921 | 3.99E-50 | -1.69E-46 |
| MS.gene058629 | MS.gene38174 | 0.801841 | 7.44E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene38174 | 0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene38174 | -0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene059034 | MS.gene38174 | -0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene059037 | MS.gene38174 | 0.837804 | 4.19E-57 | -1.69E-46 |
| MS.gene059045 | MS.gene38174 | 0.843278 | 1.55E-58 | -1.69E-46 |
| MS.gene059223 | MS.gene38174 | 0.847165 | 1.37E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene38174 | -0.856811 | 2.50E-62 | -1.69E-46 |
| MS.gene059368 | MS.gene38174 | -0.816388 | 5.67E-52 | -1.69E-46 |
| MS.gene059517 | MS.gene38174 | -0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene059680 | MS.gene38174 | -0.812548 | 4.01E-51 | -1.69E-46 |
| MS.gene059694 | MS.gene38174 | 0.803111 | 4.07E-49 | -1.69E-46 |
| MS.gene059697 | MS.gene38174 | 0.815923 | 7.21E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene38174 | -0.803286 | 3.75E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene38174 | -0.823438 | 1.38E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene38174 | 0.819432 | 1.16E-52 | -1.69E-46 |
| MS.gene060187 | MS.gene38174 | 0.834304 | 3.24E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene38174 | -0.857474 | 1.59E-62 | -1.69E-46 |
| MS.gene060595 | MS.gene38174 | 0.830096 | 3.56E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene38174 | -0.845069 | 5.11E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene38174 | -0.851515 | 8.44E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38174 | MS.gene42873 | PPI |
| MS.gene38174 | MS.gene87111 | PPI |
| MS.gene38174 | MS.gene97980 | PPI |
| MS.gene38174 | MS.gene062932 | PPI |
| MS.gene93059 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene008793 | PPI |
| MS.gene38174 | MS.gene024362 | PPI |
| MS.gene62620 | MS.gene38174 | PPI |
| MS.gene056488 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene91446 | PPI |
| MS.gene38174 | MS.gene008794 | PPI |
| MS.gene97981 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene98697 | PPI |
| MS.gene54933 | MS.gene38174 | PPI |
| MS.gene95889 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene53169 | PPI |
| MS.gene38174 | MS.gene93058 | PPI |
| MS.gene72560 | MS.gene38174 | PPI |
| MS.gene056487 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene55382 | PPI |
| MS.gene040151 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene93783 | PPI |
| MS.gene50700 | MS.gene38174 | PPI |
| MS.gene23359 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene99693 | PPI |
| MS.gene003638 | MS.gene38174 | PPI |
| MS.gene38174 | MS.gene42146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38174.t1 | MTR_5g097900 | 98.397 | 312 | 5 | 0 | 1 | 312 | 1 | 312 | 0.0 | 637 |
| MS.gene38174.t1 | MTR_5g097910 | 98.077 | 312 | 6 | 0 | 1 | 312 | 1 | 312 | 0.0 | 635 |
| MS.gene38174.t1 | MTR_5g097940 | 98.077 | 312 | 6 | 0 | 1 | 312 | 1 | 312 | 0.0 | 635 |
| MS.gene38174.t1 | MTR_3g083130 | 68.506 | 308 | 96 | 1 | 6 | 312 | 7 | 314 | 1.69e-162 | 455 |
| MS.gene38174.t1 | MTR_0374s0050 | 63.279 | 305 | 109 | 3 | 1 | 302 | 1 | 305 | 5.31e-138 | 393 |
| MS.gene38174.t1 | MTR_4g072320 | 52.508 | 299 | 132 | 4 | 1 | 297 | 1 | 291 | 1.83e-101 | 300 |
| MS.gene38174.t1 | MTR_4g072350 | 51.485 | 303 | 135 | 5 | 20 | 311 | 17 | 318 | 1.20e-99 | 296 |
| MS.gene38174.t1 | MTR_4g072360 | 50.333 | 300 | 143 | 4 | 1 | 297 | 1 | 297 | 2.43e-99 | 295 |
| MS.gene38174.t1 | MTR_6g073110 | 49.835 | 303 | 146 | 4 | 1 | 300 | 1 | 300 | 5.05e-97 | 289 |
| MS.gene38174.t1 | MTR_8g070095 | 41.901 | 284 | 162 | 2 | 19 | 300 | 15 | 297 | 2.14e-73 | 229 |
| MS.gene38174.t1 | MTR_7g063580 | 43.382 | 272 | 142 | 3 | 49 | 311 | 83 | 351 | 6.98e-71 | 223 |
| MS.gene38174.t1 | MTR_4g036845 | 40.351 | 285 | 165 | 4 | 18 | 300 | 12 | 293 | 2.63e-70 | 221 |
| MS.gene38174.t1 | MTR_8g070115 | 42.361 | 288 | 155 | 4 | 19 | 302 | 15 | 295 | 9.93e-69 | 217 |
| MS.gene38174.t1 | MTR_4g021350 | 43.206 | 287 | 148 | 5 | 19 | 300 | 15 | 291 | 1.61e-65 | 208 |
| MS.gene38174.t1 | MTR_4g021410 | 42.295 | 305 | 148 | 6 | 19 | 312 | 16 | 303 | 3.20e-65 | 207 |
| MS.gene38174.t1 | MTR_4g021350 | 43.060 | 281 | 145 | 5 | 19 | 294 | 15 | 285 | 2.26e-63 | 202 |
| MS.gene38174.t1 | MTR_4g021410 | 43.223 | 273 | 135 | 4 | 48 | 312 | 6 | 266 | 8.25e-62 | 197 |
| MS.gene38174.t1 | MTR_4g021450 | 42.908 | 282 | 147 | 3 | 19 | 300 | 16 | 283 | 1.36e-61 | 198 |
| MS.gene38174.t1 | MTR_7g070500 | 37.500 | 280 | 167 | 5 | 20 | 298 | 23 | 295 | 9.87e-58 | 189 |
| MS.gene38174.t1 | MTR_7g070500 | 37.956 | 274 | 162 | 5 | 20 | 292 | 23 | 289 | 3.21e-57 | 187 |
| MS.gene38174.t1 | MTR_4g072060 | 38.436 | 307 | 174 | 6 | 15 | 310 | 6 | 308 | 9.13e-57 | 186 |
| MS.gene38174.t1 | MTR_4g021410 | 42.259 | 239 | 118 | 4 | 82 | 312 | 1 | 227 | 7.26e-48 | 160 |
| MS.gene38174.t1 | MTR_4g021450 | 43.379 | 219 | 112 | 2 | 82 | 300 | 1 | 207 | 3.17e-45 | 153 |
| MS.gene38174.t1 | MTR_4g021450 | 43.038 | 158 | 87 | 1 | 143 | 300 | 10 | 164 | 1.25e-38 | 135 |
| MS.gene38174.t1 | MTR_6g072650 | 43.537 | 147 | 47 | 5 | 176 | 311 | 13 | 134 | 2.09e-26 | 101 |
| MS.gene38174.t1 | MTR_6g072710 | 45.133 | 113 | 57 | 2 | 191 | 300 | 1 | 111 | 6.59e-25 | 97.1 |
| MS.gene38174.t1 | MTR_3g449790 | 26.625 | 323 | 159 | 12 | 15 | 285 | 42 | 338 | 3.50e-18 | 84.3 |
| MS.gene38174.t1 | MTR_3g449790 | 26.140 | 329 | 159 | 13 | 15 | 285 | 42 | 344 | 6.68e-17 | 80.5 |
| MS.gene38174.t1 | MTR_7g114990 | 26.736 | 288 | 147 | 13 | 41 | 289 | 52 | 314 | 6.90e-13 | 68.9 |
| MS.gene38174.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 41 | 292 | 43 | 310 | 6.85e-12 | 65.9 |
| MS.gene38174.t1 | MTR_1g102750 | 23.377 | 308 | 167 | 10 | 24 | 289 | 29 | 309 | 3.39e-11 | 63.5 |
| MS.gene38174.t1 | MTR_7g021680 | 24.742 | 291 | 166 | 9 | 36 | 292 | 38 | 309 | 7.98e-11 | 62.4 |
| MS.gene38174.t1 | MTR_7g021820 | 24.742 | 291 | 166 | 9 | 36 | 292 | 38 | 309 | 7.98e-11 | 62.4 |
| MS.gene38174.t1 | MTR_1g102750 | 24.014 | 279 | 145 | 9 | 24 | 262 | 29 | 280 | 8.99e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38174.t1 | AT1G59960 | 53.896 | 308 | 131 | 6 | 1 | 300 | 1 | 305 | 1.41e-112 | 329 |
| MS.gene38174.t1 | AT1G59950 | 55.903 | 288 | 117 | 5 | 20 | 300 | 15 | 299 | 6.81e-105 | 309 |
| MS.gene38174.t1 | AT2G37790 | 43.357 | 286 | 151 | 4 | 19 | 300 | 15 | 293 | 2.84e-76 | 236 |
| MS.gene38174.t1 | AT2G37770 | 43.357 | 286 | 151 | 4 | 19 | 300 | 15 | 293 | 1.42e-75 | 234 |
| MS.gene38174.t1 | AT5G62420 | 43.310 | 284 | 155 | 4 | 20 | 300 | 14 | 294 | 1.20e-73 | 229 |
| MS.gene38174.t1 | AT5G01670 | 42.160 | 287 | 157 | 6 | 16 | 300 | 20 | 299 | 1.85e-72 | 226 |
| MS.gene38174.t1 | AT2G37760 | 42.612 | 291 | 140 | 5 | 19 | 299 | 15 | 288 | 2.29e-72 | 225 |
| MS.gene38174.t1 | AT2G37760 | 42.612 | 291 | 140 | 5 | 19 | 299 | 15 | 288 | 2.29e-72 | 225 |
| MS.gene38174.t1 | AT2G37760 | 43.056 | 288 | 137 | 5 | 19 | 296 | 15 | 285 | 2.13e-71 | 223 |
| MS.gene38174.t1 | AT2G37760 | 42.561 | 289 | 139 | 5 | 19 | 297 | 15 | 286 | 1.75e-70 | 221 |
| MS.gene38174.t1 | AT2G37760 | 42.561 | 289 | 139 | 5 | 19 | 297 | 15 | 286 | 1.75e-70 | 221 |
| MS.gene38174.t1 | AT3G53880 | 41.343 | 283 | 161 | 3 | 19 | 300 | 15 | 293 | 9.44e-69 | 217 |
| MS.gene38174.t1 | AT3G53880 | 41.429 | 280 | 153 | 4 | 19 | 294 | 15 | 287 | 1.98e-66 | 211 |
| MS.gene38174.t1 | AT5G01670 | 38.585 | 311 | 155 | 7 | 19 | 300 | 23 | 326 | 2.23e-66 | 212 |
| MS.gene38174.t1 | AT2G21260 | 38.699 | 292 | 164 | 6 | 15 | 295 | 6 | 293 | 3.96e-65 | 207 |
| MS.gene38174.t1 | AT2G21250 | 37.459 | 307 | 177 | 6 | 15 | 310 | 6 | 308 | 6.76e-64 | 204 |
| MS.gene38174.t1 | AT2G37760 | 42.276 | 246 | 121 | 4 | 62 | 297 | 6 | 240 | 4.77e-58 | 187 |
| MS.gene38174.t1 | AT2G37760 | 42.276 | 246 | 121 | 4 | 62 | 297 | 6 | 240 | 4.77e-58 | 187 |
| MS.gene38174.t1 | AT2G37770 | 46.193 | 197 | 96 | 3 | 19 | 212 | 15 | 204 | 8.04e-53 | 175 |
| MS.gene38174.t1 | AT2G21250 | 41.429 | 210 | 112 | 5 | 15 | 217 | 6 | 211 | 6.69e-47 | 158 |
| MS.gene38174.t1 | AT2G21260 | 35.000 | 220 | 130 | 5 | 87 | 295 | 8 | 225 | 7.09e-40 | 140 |
| MS.gene38174.t1 | AT1G06690 | 27.397 | 292 | 144 | 10 | 35 | 282 | 85 | 352 | 5.89e-20 | 89.7 |
| MS.gene38174.t1 | AT5G53580 | 24.912 | 285 | 159 | 10 | 44 | 290 | 80 | 347 | 1.96e-15 | 76.3 |
| MS.gene38174.t1 | AT1G60680 | 25.982 | 331 | 178 | 15 | 15 | 300 | 14 | 322 | 4.55e-14 | 72.4 |
| MS.gene38174.t1 | AT1G60750 | 25.532 | 282 | 160 | 11 | 44 | 300 | 50 | 306 | 3.46e-12 | 66.6 |
Find 62 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGATACACAAATTT+TGG | 0.147232 | 5.3:+79212936 | None:intergenic |
| TTGCATTGCAAAACTCTCTA+AGG | 0.274401 | 5.3:+79213152 | None:intergenic |
| TGGACTTGTACTTGATTCAT+TGG | 0.300645 | 5.3:-79213501 | MS.gene38174:CDS |
| ATTGGAAATGTAAACTTTCC+AGG | 0.312952 | 5.3:+79213463 | None:intergenic |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.3:+79213945 | None:intergenic |
| AGGCCTGGCTTGGTTGGTCC+AGG | 0.344379 | 5.3:+79212854 | None:intergenic |
| AAAATTTGTGTATCTTTGAT+TGG | 0.361005 | 5.3:-79212934 | MS.gene38174:CDS |
| CATTTGATGTGAAAGGTGTT+TGG | 0.375654 | 5.3:-79213420 | MS.gene38174:CDS |
| CTTGGACTCACTAAAGCTAT+TGG | 0.375778 | 5.3:-79213373 | MS.gene38174:CDS |
| CAAACACCTTTCACATCAAA+TGG | 0.378027 | 5.3:+79213421 | None:intergenic |
| AAGAGATCTGCCACATCAAT+TGG | 0.378807 | 5.3:+79213445 | None:intergenic |
| TCATTCTCCATAACCTCATT+TGG | 0.392662 | 5.3:+79213076 | None:intergenic |
| TTGCACAAATTTCTCTAAGA+TGG | 0.398611 | 5.3:-79213015 | MS.gene38174:CDS |
| TCTTTCCTTATCATAACTCT+TGG | 0.407612 | 5.3:+79212964 | None:intergenic |
| CAGAGGACCAAATGAGGTTA+TGG | 0.408273 | 5.3:-79213083 | MS.gene38174:CDS |
| ATTTGATGTGAAAGGTGTTT+GGG | 0.418218 | 5.3:-79213419 | MS.gene38174:CDS |
| TTGAAAGAGGCAATTGAACT+TGG | 0.422526 | 5.3:-79213874 | MS.gene38174:CDS |
| TGTACCCAAGAGTTATGATA+AGG | 0.428240 | 5.3:-79212969 | MS.gene38174:CDS |
| CTTTCCTTATCATAACTCTT+GGG | 0.437068 | 5.3:+79212965 | None:intergenic |
| TTTGATACTGCTGCTGCCTA+TGG | 0.438326 | 5.3:-79213922 | MS.gene38174:CDS |
| TCATTGAGGCCTGGCTTGGT+TGG | 0.438358 | 5.3:+79212848 | None:intergenic |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.3:-79212872 | MS.gene38174:CDS |
| GACTCTTCAACTAGACTACT+TGG | 0.469433 | 5.3:-79213521 | MS.gene38174:CDS |
| GAGGTCATTGAGGCCTGGCT+TGG | 0.476217 | 5.3:+79212844 | None:intergenic |
| ATCCCTGGACCAACCAAGCC+AGG | 0.483424 | 5.3:-79212857 | MS.gene38174:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.3:+79213393 | None:intergenic |
| GGCCTGGCTTGGTTGGTCCA+GGG | 0.485174 | 5.3:+79212855 | None:intergenic |
| TGTTGGTAAGAACCTTGGTT+GGG | 0.497536 | 5.3:+79214058 | None:intergenic |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.3:-79213391 | MS.gene38174:CDS |
| TCTTGGTGAGGCTTTGAAAG+AGG | 0.504118 | 5.3:-79213887 | MS.gene38174:CDS |
| TCTTTCTTACATGTGAAGTC+AGG | 0.515291 | 5.3:+79213991 | None:intergenic |
| CTCTTACCATTTGATGTGAA+AGG | 0.516557 | 5.3:-79213427 | MS.gene38174:CDS |
| CTTCAATTGACTAGAAGTGT+TGG | 0.534788 | 5.3:+79214041 | None:intergenic |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.3:-79214022 | MS.gene38174:CDS |
| TATGGTTCAGAACAAGCTCT+TGG | 0.542359 | 5.3:-79213904 | MS.gene38174:CDS |
| TCATAGAGGTCATTGAGGCC+TGG | 0.545875 | 5.3:+79212839 | None:intergenic |
| AAGAGCTTGTTCTGAACCAT+AGG | 0.546096 | 5.3:+79213906 | None:intergenic |
| AGAAGTGTTGGTAAGAACCT+TGG | 0.552345 | 5.3:+79214053 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.3:-79214021 | MS.gene38174:CDS |
| TTGACATTTAGTCATCATAG+AGG | 0.571928 | 5.3:+79212825 | None:intergenic |
| GTGTTGGTAAGAACCTTGGT+TGG | 0.585257 | 5.3:+79214057 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.3:-79213955 | MS.gene38174:CDS |
| GAAAGGTGTTTGGGAATCCA+TGG | 0.587744 | 5.3:-79213410 | MS.gene38174:CDS |
| GCTGATCCCATTCCAACCAC+AGG | 0.587926 | 5.3:+79214015 | None:intergenic |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.3:-79213001 | MS.gene38174:CDS |
| CTGCTTGCACCTTTCCTCAA+CGG | 0.589452 | 5.3:+79213103 | None:intergenic |
| AGGTGGAGATGAACCTTGCA+TGG | 0.591438 | 5.3:-79213186 | MS.gene38174:CDS |
| TGCAAGCAGAGGACCAAATG+AGG | 0.592065 | 5.3:-79213089 | MS.gene38174:CDS |
| TGAATTACTTGATTGACTGC+AGG | 0.596137 | 5.3:+79213292 | None:intergenic |
| AGTCATCATAGAGGTCATTG+AGG | 0.605914 | 5.3:+79212834 | None:intergenic |
| GTTTACATTTCCAATTGATG+TGG | 0.608506 | 5.3:-79213455 | MS.gene38174:CDS |
| CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.3:-79214027 | MS.gene38174:CDS |
| TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.3:-79213481 | MS.gene38174:CDS |
| AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.3:+79213793 | None:intergenic |
| TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.3:+79213478 | None:intergenic |
| AAAGAGATTGCAGATGCACA+TGG | 0.633321 | 5.3:-79213046 | MS.gene38174:CDS |
| TTCAGAACAAGCTCTTGGTG+AGG | 0.637219 | 5.3:-79213899 | MS.gene38174:CDS |
| TAGTCAATTGAAGATGCCTG+TGG | 0.637967 | 5.3:-79214031 | MS.gene38174:CDS |
| TTGAGGAAAGGTGCAAGCAG+AGG | 0.639249 | 5.3:-79213100 | MS.gene38174:CDS |
| TAGTGTTGAAATCCCAACCA+AGG | 0.690652 | 5.3:-79214070 | MS.gene38174:CDS |
| ATTGACTGCAGGAAGAACAG+TGG | 0.718468 | 5.3:+79213303 | None:intergenic |
| AGGTGTTTGGGAATCCATGG+AGG | 0.719619 | 5.3:-79213407 | MS.gene38174:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGTGTATCTTTGAT+TGG | - | chr5.3:79213973-79213992 | MS.gene38174:CDS | 20.0% |
| !!! | AATCAAAGATACACAAATTT+TGG | + | chr5.3:79213974-79213993 | None:intergenic | 20.0% |
| ! | CAAGAAGTTAATCAAAACTT+AGG | + | chr5.3:79213650-79213669 | None:intergenic | 25.0% |
| ! | CAATGAACTCATATATTTAC+AGG | - | chr5.3:79213701-79213720 | MS.gene38174:intron | 25.0% |
| ! | GAGTATATTTAGATGACATT+TGG | - | chr5.3:79213182-79213201 | MS.gene38174:CDS | 25.0% |
| ! | TACACTTATTGAGATTAAAC+TGG | - | chr5.3:79213344-79213363 | MS.gene38174:CDS | 25.0% |
| !!! | TTTTGTTACTTCCAAACTTT+GGG | - | chr5.3:79213077-79213096 | MS.gene38174:CDS | 25.0% |
| !!! | TTTTTGTTACTTCCAAACTT+TGG | - | chr5.3:79213076-79213095 | MS.gene38174:CDS | 25.0% |
| ATTGGAAATGTAAACTTTCC+AGG | + | chr5.3:79213447-79213466 | None:intergenic | 30.0% | |
| CTTTCCTTATCATAACTCTT+GGG | + | chr5.3:79213945-79213964 | None:intergenic | 30.0% | |
| GTTTACATTTCCAATTGATG+TGG | - | chr5.3:79213452-79213471 | MS.gene38174:CDS | 30.0% | |
| TCTTTCCTTATCATAACTCT+TGG | + | chr5.3:79213946-79213965 | None:intergenic | 30.0% | |
| TGAACTCATATATTTACAGG+TGG | - | chr5.3:79213704-79213723 | MS.gene38174:intron | 30.0% | |
| ! | ATTTTCAGTAACCCAAAGTT+TGG | + | chr5.3:79213091-79213110 | None:intergenic | 30.0% |
| ! | TTGCACAAATTTCTCTAAGA+TGG | - | chr5.3:79213892-79213911 | MS.gene38174:CDS | 30.0% |
| !! | ATTTGATGTGAAAGGTGTTT+GGG | - | chr5.3:79213488-79213507 | MS.gene38174:CDS | 30.0% |
| ATCATTGAAGCCATCAAACA+AGG | - | chr5.3:79212952-79212971 | MS.gene38174:CDS | 35.0% | |
| CAAACACCTTTCACATCAAA+TGG | + | chr5.3:79213489-79213508 | None:intergenic | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | - | chr5.3:79213906-79213925 | MS.gene38174:CDS | 35.0% | |
| CTCTTACCATTTGATGTGAA+AGG | - | chr5.3:79213480-79213499 | MS.gene38174:CDS | 35.0% | |
| TCATTCTCCATAACCTCATT+TGG | + | chr5.3:79213834-79213853 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | + | chr5.3:79212919-79212938 | None:intergenic | 35.0% | |
| TGAATTACTTGATTGACTGC+AGG | + | chr5.3:79213618-79213637 | None:intergenic | 35.0% | |
| TGGACTTGTACTTGATTCAT+TGG | - | chr5.3:79213406-79213425 | MS.gene38174:CDS | 35.0% | |
| TGTACCCAAGAGTTATGATA+AGG | - | chr5.3:79213938-79213957 | MS.gene38174:CDS | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | - | chr5.3:79213033-79213052 | MS.gene38174:CDS | 35.0% | |
| TTGCATTGCAAAACTCTCTA+AGG | + | chr5.3:79213758-79213777 | None:intergenic | 35.0% | |
| ! | AGAGAGTTTTGCAATGCAAA+TGG | - | chr5.3:79213759-79213778 | MS.gene38174:intron | 35.0% |
| ! | CTTCAATTGACTAGAAGTGT+TGG | + | chr5.3:79212869-79212888 | None:intergenic | 35.0% |
| ! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.3:79212965-79212984 | None:intergenic | 35.0% |
| !! | CATTTGATGTGAAAGGTGTT+TGG | - | chr5.3:79213487-79213506 | MS.gene38174:CDS | 35.0% |
| !! | TTGAGAGATTTTTGAAGAGC+AGG | + | chr5.3:79213132-79213151 | None:intergenic | 35.0% |
| AAAGAGATTGCAGATGCACA+TGG | - | chr5.3:79213861-79213880 | MS.gene38174:CDS | 40.0% | |
| AAGAGATCTGCCACATCAAT+TGG | + | chr5.3:79213465-79213484 | None:intergenic | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | - | chr5.3:79214035-79214054 | MS.gene38174:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.3:79213517-79213536 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | + | chr5.3:79213117-79213136 | None:intergenic | 40.0% | |
| AGTCATCATAGAGGTCATTG+AGG | + | chr5.3:79214076-79214095 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.3:79213516-79213535 | MS.gene38174:CDS | 40.0% | |
| CTTGGACTCACTAAAGCTAT+TGG | - | chr5.3:79213534-79213553 | MS.gene38174:intron | 40.0% | |
| GACTCTTCAACTAGACTACT+TGG | - | chr5.3:79213386-79213405 | MS.gene38174:CDS | 40.0% | |
| TAGTCAATTGAAGATGCCTG+TGG | - | chr5.3:79212876-79212895 | MS.gene38174:CDS | 40.0% | |
| TATGGTTCAGAACAAGCTCT+TGG | - | chr5.3:79213003-79213022 | MS.gene38174:CDS | 40.0% | |
| ! | AAGAGCTTGTTCTGAACCAT+AGG | + | chr5.3:79213004-79213023 | None:intergenic | 40.0% |
| ! | TAGTGTTGAAATCCCAACCA+AGG | - | chr5.3:79212837-79212856 | MS.gene38174:CDS | 40.0% |
| ! | TGTTGGTAAGAACCTTGGTT+GGG | + | chr5.3:79212852-79212871 | None:intergenic | 40.0% |
| ! | TTTCCAGGTTGAGAACTAAG+TGG | + | chr5.3:79213432-79213451 | None:intergenic | 40.0% |
| !! | AGAAGTGTTGGTAAGAACCT+TGG | + | chr5.3:79212857-79212876 | None:intergenic | 40.0% |
| !! | TGGATTTGTTGATTTCGTGC+AGG | - | chr5.3:79213364-79213383 | MS.gene38174:CDS | 40.0% |
| AAGATGCCTGTGGTTGGAAT+GGG | - | chr5.3:79212886-79212905 | MS.gene38174:CDS | 45.0% | |
| ATTGACTGCAGGAAGAACAG+TGG | + | chr5.3:79213607-79213626 | None:intergenic | 45.0% | |
| CAATTGAAGATGCCTGTGGT+TGG | - | chr5.3:79212880-79212899 | MS.gene38174:CDS | 45.0% | |
| CAGAGGACCAAATGAGGTTA+TGG | - | chr5.3:79213824-79213843 | MS.gene38174:CDS | 45.0% | |
| TTCAGAACAAGCTCTTGGTG+AGG | - | chr5.3:79213008-79213027 | MS.gene38174:CDS | 45.0% | |
| TTTGATACTGCTGCTGCCTA+TGG | - | chr5.3:79212985-79213004 | MS.gene38174:CDS | 45.0% | |
| ! | GGTTCTTTTGTTGCCATGCA+AGG | + | chr5.3:79213737-79213756 | None:intergenic | 45.0% |
| ! | GTGTTGGTAAGAACCTTGGT+TGG | + | chr5.3:79212853-79212872 | None:intergenic | 45.0% |
| !! | GAAAGGTGTTTGGGAATCCA+TGG | - | chr5.3:79213497-79213516 | MS.gene38174:CDS | 45.0% |
| !! | TCTTGGTGAGGCTTTGAAAG+AGG | - | chr5.3:79213020-79213039 | MS.gene38174:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | - | chr5.3:79213721-79213740 | MS.gene38174:intron | 50.0% | |
| AGGTGTTTGGGAATCCATGG+AGG | - | chr5.3:79213500-79213519 | MS.gene38174:CDS | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+CGG | + | chr5.3:79213807-79213826 | None:intergenic | 50.0% | |
| GAAGATGCCTGTGGTTGGAA+TGG | - | chr5.3:79212885-79212904 | MS.gene38174:CDS | 50.0% | |
| TCATAGAGGTCATTGAGGCC+TGG | + | chr5.3:79214071-79214090 | None:intergenic | 50.0% | |
| TGCAAGCAGAGGACCAAATG+AGG | - | chr5.3:79213818-79213837 | MS.gene38174:CDS | 50.0% | |
| ! | TAACTGCGTTTTCGCCGTTG+AGG | - | chr5.3:79213790-79213809 | MS.gene38174:CDS | 50.0% |
| ! | TGGCCACTTAGTTCTCAACC+TGG | - | chr5.3:79213426-79213445 | MS.gene38174:CDS | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.3:79213807-79213826 | MS.gene38174:CDS | 50.0% |
| GCTGATCCCATTCCAACCAC+AGG | + | chr5.3:79212895-79212914 | None:intergenic | 55.0% | |
| ! | GCGTTTTCGCCGTTGAGGAA+AGG | - | chr5.3:79213795-79213814 | MS.gene38174:CDS | 55.0% |
| !! | TCATTGAGGCCTGGCTTGGT+TGG | + | chr5.3:79214062-79214081 | None:intergenic | 55.0% |
| ATCCCTGGACCAACCAAGCC+AGG | - | chr5.3:79214050-79214069 | MS.gene38174:CDS | 60.0% | |
| GAGGTCATTGAGGCCTGGCT+TGG | + | chr5.3:79214066-79214085 | None:intergenic | 60.0% | |
| !! | AGGCCTGGCTTGGTTGGTCC+AGG | + | chr5.3:79214056-79214075 | None:intergenic | 65.0% |
| !! | GGCCTGGCTTGGTTGGTCCA+GGG | + | chr5.3:79214055-79214074 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 79212832 | 79214097 | 79212832 | ID=MS.gene38174 |
| chr5.3 | mRNA | 79212832 | 79214097 | 79212832 | ID=MS.gene38174.t1;Parent=MS.gene38174 |
| chr5.3 | exon | 79213778 | 79214097 | 79213778 | ID=MS.gene38174.t1.exon1;Parent=MS.gene38174.t1 |
| chr5.3 | CDS | 79213778 | 79214097 | 79213778 | ID=cds.MS.gene38174.t1;Parent=MS.gene38174.t1 |
| chr5.3 | exon | 79213300 | 79213543 | 79213300 | ID=MS.gene38174.t1.exon2;Parent=MS.gene38174.t1 |
| chr5.3 | CDS | 79213300 | 79213543 | 79213300 | ID=cds.MS.gene38174.t1;Parent=MS.gene38174.t1 |
| chr5.3 | exon | 79212832 | 79213206 | 79212832 | ID=MS.gene38174.t1.exon3;Parent=MS.gene38174.t1 |
| chr5.3 | CDS | 79212832 | 79213206 | 79212832 | ID=cds.MS.gene38174.t1;Parent=MS.gene38174.t1 |
| Gene Sequence |
| Protein sequence |
