Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38094.t1 | CAA57784.1 | 99.7 | 293 | 1 | 0 | 1 | 293 | 20 | 312 | 5.10E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38094.t1 | P26690 | 86.7 | 293 | 39 | 0 | 1 | 293 | 21 | 313 | 2.2e-149 | 529.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38094.t1 | Q40310 | 99.7 | 293 | 1 | 0 | 1 | 293 | 20 | 312 | 3.7e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene38094 | -0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene38094 | -0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene38094 | -0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene38094 | -0.852446 | 4.59E-61 | -1.69E-46 |
| MS.gene049259 | MS.gene38094 | 0.816542 | 5.24E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene38094 | -0.81965 | 1.04E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene38094 | -0.84163 | 4.23E-58 | -1.69E-46 |
| MS.gene049483 | MS.gene38094 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene38094 | 0.821839 | 3.26E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene38094 | -0.803103 | 4.09E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene38094 | 0.807043 | 6.13E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene38094 | -0.843858 | 1.08E-58 | -1.69E-46 |
| MS.gene050216 | MS.gene38094 | -0.850205 | 1.97E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene38094 | -0.813995 | 1.93E-51 | -1.69E-46 |
| MS.gene050363 | MS.gene38094 | 0.855254 | 7.14E-62 | -1.69E-46 |
| MS.gene050380 | MS.gene38094 | 0.839734 | 1.33E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene38094 | 0.910061 | 2.85E-82 | -1.69E-46 |
| MS.gene050496 | MS.gene38094 | -0.828924 | 6.86E-55 | -1.69E-46 |
| MS.gene050502 | MS.gene38094 | -0.807575 | 4.73E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene38094 | -0.863296 | 2.75E-64 | -1.69E-46 |
| MS.gene050518 | MS.gene38094 | -0.819199 | 1.32E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene38094 | -0.843409 | 1.43E-58 | -1.69E-46 |
| MS.gene050662 | MS.gene38094 | -0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene38094 | -0.830499 | 2.84E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene38094 | -0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene38094 | -0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene38094 | -0.853814 | 1.86E-61 | -1.69E-46 |
| MS.gene050871 | MS.gene38094 | -0.856315 | 3.50E-62 | -1.69E-46 |
| MS.gene050883 | MS.gene38094 | 0.919607 | 3.64E-87 | -1.69E-46 |
| MS.gene050986 | MS.gene38094 | -0.844962 | 5.46E-59 | -1.69E-46 |
| MS.gene051044 | MS.gene38094 | 0.811705 | 6.12E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene38094 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene38094 | 0.89346 | 6.16E-75 | -1.69E-46 |
| MS.gene051138 | MS.gene38094 | 0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene38094 | -0.821499 | 3.91E-53 | -1.69E-46 |
| MS.gene051364 | MS.gene38094 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene38094 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene05141 | MS.gene38094 | 0.854928 | 8.87E-62 | -1.69E-46 |
| MS.gene051509 | MS.gene38094 | -0.829798 | 4.21E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene38094 | -0.816458 | 5.47E-52 | -1.69E-46 |
| MS.gene051560 | MS.gene38094 | -0.807011 | 6.22E-50 | -1.69E-46 |
| MS.gene051564 | MS.gene38094 | -0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene38094 | 0.861629 | 8.97E-64 | -1.69E-46 |
| MS.gene052164 | MS.gene38094 | -0.833041 | 6.70E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene38094 | -0.838498 | 2.77E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene38094 | -0.840696 | 7.44E-58 | -1.69E-46 |
| MS.gene052566 | MS.gene38094 | 0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene052916 | MS.gene38094 | -0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene38094 | -0.836727 | 7.90E-57 | -1.69E-46 |
| MS.gene053018 | MS.gene38094 | -0.813745 | 2.19E-51 | -1.69E-46 |
| MS.gene053069 | MS.gene38094 | 0.832442 | 9.43E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene38094 | -0.835498 | 1.62E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene38094 | -0.813132 | 2.99E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene38094 | -0.812809 | 3.52E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene38094 | 0.874335 | 7.32E-68 | -1.69E-46 |
| MS.gene053436 | MS.gene38094 | -0.819164 | 1.34E-52 | -1.69E-46 |
| MS.gene053488 | MS.gene38094 | 0.808595 | 2.87E-50 | -1.69E-46 |
| MS.gene053549 | MS.gene38094 | 0.854296 | 1.35E-61 | -1.69E-46 |
| MS.gene053561 | MS.gene38094 | 0.856568 | 2.95E-62 | -1.69E-46 |
| MS.gene053574 | MS.gene38094 | -0.823338 | 1.46E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene38094 | -0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene053826 | MS.gene38094 | 0.83394 | 3.99E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene38094 | -0.810469 | 1.14E-50 | -1.69E-46 |
| MS.gene054054 | MS.gene38094 | 0.814323 | 1.63E-51 | -1.69E-46 |
| MS.gene054056 | MS.gene38094 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene38094 | -0.851534 | 8.34E-61 | -1.69E-46 |
| MS.gene054616 | MS.gene38094 | 0.837331 | 5.54E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene38094 | -0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene054708 | MS.gene38094 | 0.859865 | 3.08E-63 | -1.69E-46 |
| MS.gene054954 | MS.gene38094 | -0.829988 | 3.78E-55 | -1.69E-46 |
| MS.gene055124 | MS.gene38094 | 0.876154 | 1.75E-68 | -1.69E-46 |
| MS.gene055139 | MS.gene38094 | 0.820281 | 7.45E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene38094 | 0.877626 | 5.41E-69 | -1.69E-46 |
| MS.gene055202 | MS.gene38094 | 0.832561 | 8.81E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene38094 | -0.835949 | 1.25E-56 | -1.69E-46 |
| MS.gene055401 | MS.gene38094 | 0.821411 | 4.10E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene38094 | -0.837109 | 6.31E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene38094 | -0.82855 | 8.45E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene38094 | -0.83475 | 2.50E-56 | -1.69E-46 |
| MS.gene055751 | MS.gene38094 | -0.802961 | 4.38E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene38094 | -0.820637 | 6.17E-53 | -1.69E-46 |
| MS.gene056298 | MS.gene38094 | 0.816331 | 5.84E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene38094 | 0.92445 | 6.93E-90 | -1.69E-46 |
| MS.gene056311 | MS.gene38094 | 0.922141 | 1.44E-88 | -1.69E-46 |
| MS.gene056313 | MS.gene38094 | 0.909393 | 5.99E-82 | -1.69E-46 |
| MS.gene056408 | MS.gene38094 | 0.839179 | 1.85E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene38094 | -0.857689 | 1.38E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene38094 | -0.831406 | 1.70E-55 | -1.69E-46 |
| MS.gene056530 | MS.gene38094 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene38094 | -0.820347 | 7.19E-53 | -1.69E-46 |
| MS.gene056878 | MS.gene38094 | -0.821903 | 3.15E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene38094 | 0.869488 | 2.98E-66 | -1.69E-46 |
| MS.gene057473 | MS.gene38094 | 0.815719 | 8.00E-52 | -1.69E-46 |
| MS.gene058068 | MS.gene38094 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene38094 | 0.808697 | 2.73E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene38094 | 0.8481 | 7.60E-60 | -1.69E-46 |
| MS.gene058108 | MS.gene38094 | 0.856794 | 2.53E-62 | -1.69E-46 |
| MS.gene058109 | MS.gene38094 | 0.889013 | 3.54E-73 | -1.69E-46 |
| MS.gene058111 | MS.gene38094 | 0.851635 | 7.80E-61 | -1.69E-46 |
| MS.gene058117 | MS.gene38094 | 0.822625 | 2.14E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene38094 | -0.825119 | 5.58E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene38094 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene38094 | 0.892804 | 1.13E-74 | -1.69E-46 |
| MS.gene058173 | MS.gene38094 | 0.892638 | 1.32E-74 | -1.69E-46 |
| MS.gene058174 | MS.gene38094 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene38094 | 0.894636 | 2.05E-75 | -1.69E-46 |
| MS.gene058179 | MS.gene38094 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene058180 | MS.gene38094 | 0.818537 | 1.86E-52 | -1.69E-46 |
| MS.gene058268 | MS.gene38094 | 0.810984 | 8.78E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene38094 | 0.812858 | 3.43E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene38094 | -0.841116 | 5.77E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene38094 | -0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene38094 | 0.847856 | 8.88E-60 | -1.69E-46 |
| MS.gene058494 | MS.gene38094 | 0.849598 | 2.92E-60 | -1.69E-46 |
| MS.gene058496 | MS.gene38094 | 0.803606 | 3.22E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene38094 | 0.828356 | 9.41E-55 | -1.69E-46 |
| MS.gene058629 | MS.gene38094 | 0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene058630 | MS.gene38094 | 0.829554 | 4.82E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene38094 | -0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene058840 | MS.gene38094 | 0.813874 | 2.05E-51 | -1.69E-46 |
| MS.gene05884 | MS.gene38094 | 0.834581 | 2.76E-56 | -1.69E-46 |
| MS.gene058978 | MS.gene38094 | 0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene38094 | -0.858015 | 1.10E-62 | -1.69E-46 |
| MS.gene059034 | MS.gene38094 | -0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene38094 | 0.846727 | 1.81E-59 | -1.69E-46 |
| MS.gene059038 | MS.gene38094 | 0.810589 | 1.07E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene38094 | 0.858807 | 6.39E-63 | -1.69E-46 |
| MS.gene059052 | MS.gene38094 | 0.834282 | 3.28E-56 | -1.69E-46 |
| MS.gene059223 | MS.gene38094 | 0.852101 | 5.76E-61 | -1.69E-46 |
| MS.gene059236 | MS.gene38094 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene38094 | -0.856252 | 3.65E-62 | -1.69E-46 |
| MS.gene059680 | MS.gene38094 | -0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene38094 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene059691 | MS.gene38094 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene38094 | 0.827094 | 1.89E-54 | -1.69E-46 |
| MS.gene059697 | MS.gene38094 | 0.836857 | 7.32E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene38094 | -0.82279 | 1.96E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene38094 | -0.857347 | 1.74E-62 | -1.69E-46 |
| MS.gene059916 | MS.gene38094 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene059943 | MS.gene38094 | 0.83918 | 1.85E-57 | -1.69E-46 |
| MS.gene059944 | MS.gene38094 | 0.818607 | 1.79E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene38094 | -0.807165 | 5.77E-50 | -1.69E-46 |
| MS.gene060187 | MS.gene38094 | 0.825933 | 3.58E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene38094 | -0.866279 | 3.20E-65 | -1.69E-46 |
| MS.gene060595 | MS.gene38094 | 0.837534 | 4.91E-57 | -1.69E-46 |
| MS.gene060602 | MS.gene38094 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene38094 | -0.804073 | 2.57E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene38094 | -0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene060778 | MS.gene38094 | -0.843303 | 1.52E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene38094 | -0.87159 | 6.09E-67 | -1.69E-46 |
| MS.gene060982 | MS.gene38094 | -0.814116 | 1.81E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55382 | MS.gene38094 | PPI |
| MS.gene040151 | MS.gene38094 | PPI |
| MS.gene42873 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene87111 | PPI |
| MS.gene50700 | MS.gene38094 | PPI |
| MS.gene23359 | MS.gene38094 | PPI |
| MS.gene008793 | MS.gene38094 | PPI |
| MS.gene42146 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene53169 | PPI |
| MS.gene003638 | MS.gene38094 | PPI |
| MS.gene98697 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene024362 | PPI |
| MS.gene38094 | MS.gene91446 | PPI |
| MS.gene38094 | MS.gene008794 | PPI |
| MS.gene056488 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene93783 | PPI |
| MS.gene38094 | MS.gene93058 | PPI |
| MS.gene93059 | MS.gene38094 | PPI |
| MS.gene62620 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene99693 | PPI |
| MS.gene97981 | MS.gene38094 | PPI |
| MS.gene062932 | MS.gene38094 | PPI |
| MS.gene54933 | MS.gene38094 | PPI |
| MS.gene95889 | MS.gene38094 | PPI |
| MS.gene38094 | MS.gene97980 | PPI |
| MS.gene72560 | MS.gene38094 | PPI |
| MS.gene056487 | MS.gene38094 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38094.t1 | MTR_5g097900 | 97.952 | 293 | 6 | 0 | 1 | 293 | 20 | 312 | 0.0 | 600 |
| MS.gene38094.t1 | MTR_5g097910 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 599 |
| MS.gene38094.t1 | MTR_5g097940 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 599 |
| MS.gene38094.t1 | MTR_3g083130 | 69.728 | 294 | 88 | 1 | 1 | 293 | 21 | 314 | 5.23e-158 | 443 |
| MS.gene38094.t1 | MTR_0374s0050 | 64.685 | 286 | 98 | 3 | 1 | 283 | 20 | 305 | 8.95e-133 | 379 |
| MS.gene38094.t1 | MTR_4g072320 | 53.929 | 280 | 122 | 3 | 1 | 278 | 17 | 291 | 7.91e-100 | 295 |
| MS.gene38094.t1 | MTR_4g072350 | 51.155 | 303 | 136 | 5 | 1 | 292 | 17 | 318 | 4.47e-99 | 294 |
| MS.gene38094.t1 | MTR_4g072360 | 51.601 | 281 | 133 | 3 | 1 | 278 | 17 | 297 | 8.56e-98 | 290 |
| MS.gene38094.t1 | MTR_6g073110 | 50.704 | 284 | 137 | 3 | 1 | 281 | 17 | 300 | 6.06e-96 | 286 |
| MS.gene38094.t1 | MTR_8g070095 | 42.049 | 283 | 161 | 2 | 1 | 281 | 16 | 297 | 1.68e-73 | 228 |
| MS.gene38094.t1 | MTR_4g036845 | 40.989 | 283 | 162 | 4 | 1 | 281 | 14 | 293 | 7.13e-71 | 221 |
| MS.gene38094.t1 | MTR_7g063580 | 43.382 | 272 | 142 | 3 | 30 | 292 | 83 | 351 | 7.87e-71 | 223 |
| MS.gene38094.t1 | MTR_8g070115 | 43.750 | 256 | 141 | 2 | 29 | 283 | 42 | 295 | 2.62e-69 | 218 |
| MS.gene38094.t1 | MTR_4g021350 | 43.357 | 286 | 147 | 5 | 1 | 281 | 16 | 291 | 1.29e-65 | 208 |
| MS.gene38094.t1 | MTR_4g021410 | 42.105 | 304 | 148 | 6 | 1 | 293 | 17 | 303 | 1.09e-64 | 205 |
| MS.gene38094.t1 | MTR_4g021350 | 43.214 | 280 | 144 | 5 | 1 | 275 | 16 | 285 | 1.90e-63 | 201 |
| MS.gene38094.t1 | MTR_4g021410 | 43.223 | 273 | 135 | 4 | 29 | 293 | 6 | 266 | 6.35e-62 | 197 |
| MS.gene38094.t1 | MTR_4g021450 | 42.705 | 281 | 147 | 3 | 1 | 281 | 17 | 283 | 3.70e-61 | 196 |
| MS.gene38094.t1 | MTR_7g070500 | 37.857 | 280 | 166 | 5 | 1 | 279 | 23 | 295 | 1.39e-58 | 190 |
| MS.gene38094.t1 | MTR_7g070500 | 38.321 | 274 | 161 | 5 | 1 | 273 | 23 | 289 | 4.66e-58 | 188 |
| MS.gene38094.t1 | MTR_4g072060 | 38.742 | 302 | 170 | 6 | 1 | 291 | 11 | 308 | 2.27e-56 | 184 |
| MS.gene38094.t1 | MTR_4g021410 | 41.841 | 239 | 119 | 4 | 63 | 293 | 1 | 227 | 1.32e-47 | 159 |
| MS.gene38094.t1 | MTR_4g021450 | 42.922 | 219 | 113 | 2 | 63 | 281 | 1 | 207 | 6.71e-45 | 152 |
| MS.gene38094.t1 | MTR_4g021450 | 43.038 | 158 | 87 | 1 | 124 | 281 | 10 | 164 | 8.19e-39 | 135 |
| MS.gene38094.t1 | MTR_6g072650 | 43.537 | 147 | 47 | 5 | 157 | 292 | 13 | 134 | 2.02e-26 | 101 |
| MS.gene38094.t1 | MTR_6g072710 | 45.133 | 113 | 57 | 2 | 172 | 281 | 1 | 111 | 5.34e-25 | 97.1 |
| MS.gene38094.t1 | MTR_3g449790 | 27.055 | 292 | 147 | 10 | 15 | 266 | 73 | 338 | 1.63e-18 | 84.7 |
| MS.gene38094.t1 | MTR_3g449790 | 26.510 | 298 | 147 | 11 | 15 | 266 | 73 | 344 | 4.13e-17 | 80.9 |
| MS.gene38094.t1 | MTR_3g092140 | 22.789 | 294 | 178 | 9 | 17 | 275 | 71 | 350 | 1.45e-13 | 70.9 |
| MS.gene38094.t1 | MTR_7g114990 | 25.347 | 288 | 151 | 11 | 22 | 270 | 52 | 314 | 6.23e-13 | 68.6 |
| MS.gene38094.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 22 | 273 | 43 | 310 | 6.41e-12 | 65.5 |
| MS.gene38094.t1 | MTR_1g102750 | 23.301 | 309 | 166 | 10 | 5 | 270 | 29 | 309 | 8.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38094.t1 | AT1G59960 | 56.250 | 288 | 116 | 5 | 1 | 281 | 21 | 305 | 9.15e-112 | 326 |
| MS.gene38094.t1 | AT1G59950 | 55.903 | 288 | 117 | 5 | 1 | 281 | 15 | 299 | 9.06e-105 | 308 |
| MS.gene38094.t1 | AT2G37790 | 43.509 | 285 | 150 | 4 | 1 | 281 | 16 | 293 | 2.47e-76 | 236 |
| MS.gene38094.t1 | AT2G37770 | 43.860 | 285 | 149 | 4 | 1 | 281 | 16 | 293 | 7.30e-76 | 234 |
| MS.gene38094.t1 | AT5G62420 | 43.310 | 284 | 155 | 4 | 1 | 281 | 14 | 294 | 2.48e-73 | 228 |
| MS.gene38094.t1 | AT2G37760 | 43.816 | 283 | 146 | 4 | 1 | 280 | 16 | 288 | 1.49e-72 | 225 |
| MS.gene38094.t1 | AT2G37760 | 43.816 | 283 | 146 | 4 | 1 | 280 | 16 | 288 | 1.49e-72 | 225 |
| MS.gene38094.t1 | AT5G01670 | 42.049 | 283 | 155 | 6 | 1 | 281 | 24 | 299 | 7.00e-72 | 224 |
| MS.gene38094.t1 | AT2G37760 | 44.286 | 280 | 143 | 4 | 1 | 277 | 16 | 285 | 1.19e-71 | 223 |
| MS.gene38094.t1 | AT2G37760 | 43.772 | 281 | 145 | 4 | 1 | 278 | 16 | 286 | 8.69e-71 | 221 |
| MS.gene38094.t1 | AT2G37760 | 43.772 | 281 | 145 | 4 | 1 | 278 | 16 | 286 | 8.69e-71 | 221 |
| MS.gene38094.t1 | AT3G53880 | 42.969 | 256 | 143 | 2 | 27 | 281 | 40 | 293 | 3.48e-69 | 217 |
| MS.gene38094.t1 | AT3G53880 | 42.800 | 250 | 140 | 2 | 27 | 275 | 40 | 287 | 8.47e-67 | 211 |
| MS.gene38094.t1 | AT5G01670 | 38.387 | 310 | 155 | 7 | 1 | 281 | 24 | 326 | 6.98e-66 | 210 |
| MS.gene38094.t1 | AT2G21260 | 38.676 | 287 | 161 | 6 | 1 | 276 | 11 | 293 | 2.32e-64 | 204 |
| MS.gene38094.t1 | AT2G21250 | 37.417 | 302 | 174 | 6 | 1 | 291 | 11 | 308 | 4.23e-63 | 201 |
| MS.gene38094.t1 | AT2G37760 | 43.933 | 239 | 127 | 3 | 43 | 278 | 6 | 240 | 4.38e-59 | 190 |
| MS.gene38094.t1 | AT2G37760 | 43.933 | 239 | 127 | 3 | 43 | 278 | 6 | 240 | 4.38e-59 | 190 |
| MS.gene38094.t1 | AT2G37770 | 46.939 | 196 | 94 | 3 | 1 | 193 | 16 | 204 | 3.41e-53 | 175 |
| MS.gene38094.t1 | AT2G21250 | 41.463 | 205 | 109 | 5 | 1 | 198 | 11 | 211 | 5.25e-46 | 155 |
| MS.gene38094.t1 | AT2G21260 | 34.545 | 220 | 131 | 5 | 68 | 276 | 8 | 225 | 5.57e-40 | 140 |
| MS.gene38094.t1 | AT1G06690 | 27.972 | 286 | 150 | 9 | 16 | 263 | 85 | 352 | 1.28e-20 | 90.9 |
| MS.gene38094.t1 | AT5G53580 | 24.912 | 285 | 159 | 10 | 25 | 271 | 80 | 347 | 2.93e-15 | 75.5 |
| MS.gene38094.t1 | AT1G60680 | 26.730 | 318 | 169 | 15 | 6 | 281 | 27 | 322 | 6.74e-14 | 71.6 |
| MS.gene38094.t1 | AT1G60750 | 25.532 | 282 | 160 | 12 | 25 | 281 | 50 | 306 | 1.37e-11 | 64.7 |
Find 59 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGATACACAAATTT+TGG | 0.147232 | 5.1:+78300511 | None:intergenic |
| TTGCATTGCAAAACTCTCTA+AGG | 0.274401 | 5.1:+78300727 | None:intergenic |
| ATTGGAAATGAAAACTTTCC+AGG | 0.287256 | 5.1:+78301038 | None:intergenic |
| TGGACTTGTACTTGATTCAT+TGG | 0.300645 | 5.1:-78301076 | MS.gene38094:CDS |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.1:+78301524 | None:intergenic |
| CTTTGTCACTTCCAAACTTT+GGG | 0.341927 | 5.1:-78301409 | MS.gene38094:CDS |
| AGGCCTGGCTTGGTTGGTCC+AGG | 0.344379 | 5.1:+78300429 | None:intergenic |
| AAAATTTGTGTATCTTTGAT+TGG | 0.361005 | 5.1:-78300509 | MS.gene38094:CDS |
| TCTTTCTTACATGTGAAGTC+AGG | 0.371382 | 5.1:+78301570 | None:intergenic |
| CATTTGATGTGAAAGGTGTT+TGG | 0.375654 | 5.1:-78300995 | MS.gene38094:CDS |
| CTTGGACTCACTAAAGCTAT+TGG | 0.375778 | 5.1:-78300948 | MS.gene38094:CDS |
| CAAACACCTTTCACATCAAA+TGG | 0.378027 | 5.1:+78300996 | None:intergenic |
| AAGAGATCTGCCACATCAAT+TGG | 0.378807 | 5.1:+78301020 | None:intergenic |
| TCTTTGTCACTTCCAAACTT+TGG | 0.379540 | 5.1:-78301410 | MS.gene38094:CDS |
| TCATTCTCCATAACCTCATT+TGG | 0.392662 | 5.1:+78300651 | None:intergenic |
| TTGCACAAATTTCTCTAAGA+TGG | 0.398611 | 5.1:-78300590 | MS.gene38094:CDS |
| TCTTTCCTTATCATAACTCT+TGG | 0.404407 | 5.1:+78300539 | None:intergenic |
| CAGAGGACCAAATGAGGTTA+TGG | 0.408273 | 5.1:-78300658 | MS.gene38094:CDS |
| ATTTGATGTGAAAGGTGTTT+GGG | 0.418218 | 5.1:-78300994 | MS.gene38094:CDS |
| TTGAAAGAGGCAATTGAACT+TGG | 0.422526 | 5.1:-78301453 | MS.gene38094:CDS |
| TGTTCCCAAGAGTTATGATA+AGG | 0.428240 | 5.1:-78300544 | MS.gene38094:CDS |
| TCATTGAGGCCTGGCTTGGT+TGG | 0.438358 | 5.1:+78300423 | None:intergenic |
| CTTTCCTTATCATAACTCTT+GGG | 0.442857 | 5.1:+78300540 | None:intergenic |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.1:-78300447 | MS.gene38094:CDS |
| GACTCTTCAACTAGACTACT+TGG | 0.469433 | 5.1:-78301096 | MS.gene38094:CDS |
| GAGGTCATTGAGGCCTGGCT+TGG | 0.476217 | 5.1:+78300419 | None:intergenic |
| ATCCCTGGACCAACCAAGCC+AGG | 0.483424 | 5.1:-78300432 | MS.gene38094:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.1:+78300968 | None:intergenic |
| GGCCTGGCTTGGTTGGTCCA+GGG | 0.485174 | 5.1:+78300430 | None:intergenic |
| TGAATTACTTGATTGACTGC+TGG | 0.489360 | 5.1:+78300867 | None:intergenic |
| TTTGATACTGCTGCTGCGTA+TGG | 0.491072 | 5.1:-78301501 | MS.gene38094:CDS |
| TATGGCTCAGAACAAGCTCT+TGG | 0.492260 | 5.1:-78301483 | MS.gene38094:CDS |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.1:-78300966 | MS.gene38094:CDS |
| TCTTGGAGAGGCTTTGAAAG+AGG | 0.506147 | 5.1:-78301466 | MS.gene38094:CDS |
| CTTTCTTACATGTGAAGTCA+GGG | 0.506502 | 5.1:+78301571 | None:intergenic |
| CTCTTACCATTTGATGTGAA+AGG | 0.516557 | 5.1:-78301002 | MS.gene38094:CDS |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.533175 | 5.1:-78301601 | None:intergenic |
| TCATAGAGGTCATTGAGGCC+TGG | 0.545875 | 5.1:+78300414 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.552845 | 5.1:-78301600 | MS.gene38094:CDS |
| CTGACATTTAGTCATCATAG+AGG | 0.564328 | 5.1:+78300400 | None:intergenic |
| GCTGATCCCATTCCAACCAC+AGG | 0.587516 | 5.1:+78301594 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.1:-78301534 | MS.gene38094:CDS |
| GAAAGGTGTTTGGGAATCCA+TGG | 0.587744 | 5.1:-78300985 | MS.gene38094:CDS |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.1:-78300576 | MS.gene38094:CDS |
| CTGCTTGCACCTTTCCTCAA+CGG | 0.589452 | 5.1:+78300678 | None:intergenic |
| AGGTGGAGATGAACCTTGCA+TGG | 0.591438 | 5.1:-78300761 | MS.gene38094:CDS |
| TGCAAGCAGAGGACCAAATG+AGG | 0.592065 | 5.1:-78300664 | MS.gene38094:CDS |
| CAACTGAAGATGCCTGTGGT+TGG | 0.604555 | 5.1:-78301606 | None:intergenic |
| AGTCATCATAGAGGTCATTG+AGG | 0.605914 | 5.1:+78300409 | None:intergenic |
| TGGTCAACTGAAGATGCCTG+TGG | 0.614136 | 5.1:-78301610 | None:intergenic |
| TTTCTTACATGTGAAGTCAG+GGG | 0.620409 | 5.1:+78301572 | None:intergenic |
| TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.1:-78301056 | MS.gene38094:CDS |
| TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.1:+78301053 | None:intergenic |
| AAAGAGATTGCAGATGCACA+TGG | 0.633321 | 5.1:-78300621 | MS.gene38094:CDS |
| CTCAGAACAAGCTCTTGGAG+AGG | 0.635937 | 5.1:-78301478 | MS.gene38094:CDS |
| AGAGCAGGAATAACAAGATG+AGG | 0.638684 | 5.1:+78301372 | None:intergenic |
| TTGAGGAAAGGTGCAAGCAG+AGG | 0.639249 | 5.1:-78300675 | MS.gene38094:CDS |
| AGGTGTTTGGGAATCCATGG+AGG | 0.719619 | 5.1:-78300982 | MS.gene38094:CDS |
| ATTGACTGCTGGAAGAACAG+TGG | 0.720759 | 5.1:+78300878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGTGTATCTTTGAT+TGG | - | chr5.1:78301495-78301514 | MS.gene38094:CDS | 20.0% |
| !! | CAAAAAGTTAATCAAAACTT+AGG | + | chr5.1:78301172-78301191 | None:intergenic | 20.0% |
| !!! | AATCAAAGATACACAAATTT+TGG | + | chr5.1:78301496-78301515 | None:intergenic | 20.0% |
| ! | CAATGAACTCATATATTTAC+AGG | - | chr5.1:78301223-78301242 | MS.gene38094:intron | 25.0% |
| ! | TACACTTATTGAGATTAAAC+TGG | - | chr5.1:78300866-78300885 | MS.gene38094:intron | 25.0% |
| ATTGGAAATGAAAACTTTCC+AGG | + | chr5.1:78300969-78300988 | None:intergenic | 30.0% | |
| CTTTCCTTATCATAACTCTT+GGG | + | chr5.1:78301467-78301486 | None:intergenic | 30.0% | |
| TCTTTCCTTATCATAACTCT+TGG | + | chr5.1:78301468-78301487 | None:intergenic | 30.0% | |
| TGAACTCATATATTTACAGG+TGG | - | chr5.1:78301226-78301245 | MS.gene38094:intron | 30.0% | |
| ! | ATTTTCAGTAACCCAAAGTT+TGG | + | chr5.1:78300609-78300628 | None:intergenic | 30.0% |
| ! | GTTTTCATTTCCAATTGATG+TGG | - | chr5.1:78300974-78300993 | MS.gene38094:CDS | 30.0% |
| ! | TTGCACAAATTTCTCTAAGA+TGG | - | chr5.1:78301414-78301433 | MS.gene38094:CDS | 30.0% |
| !! | ATTTGATGTGAAAGGTGTTT+GGG | - | chr5.1:78301010-78301029 | MS.gene38094:CDS | 30.0% |
| ATCATTGAAGCCATCAAACA+AGG | - | chr5.1:78300470-78300489 | MS.gene38094:CDS | 35.0% | |
| CAAACACCTTTCACATCAAA+TGG | + | chr5.1:78301011-78301030 | None:intergenic | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | - | chr5.1:78301428-78301447 | MS.gene38094:CDS | 35.0% | |
| CTCTTACCATTTGATGTGAA+AGG | - | chr5.1:78301002-78301021 | MS.gene38094:CDS | 35.0% | |
| CTTTCTTACATGTGAAGTCA+GGG | + | chr5.1:78300436-78300455 | None:intergenic | 35.0% | |
| TCATTCTCCATAACCTCATT+TGG | + | chr5.1:78301356-78301375 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | + | chr5.1:78300437-78300456 | None:intergenic | 35.0% | |
| TGAATTACTTGATTGACTGC+TGG | + | chr5.1:78301140-78301159 | None:intergenic | 35.0% | |
| TGGACTTGTACTTGATTCAT+TGG | - | chr5.1:78300928-78300947 | MS.gene38094:CDS | 35.0% | |
| TGTTCCCAAGAGTTATGATA+AGG | - | chr5.1:78301460-78301479 | MS.gene38094:CDS | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | - | chr5.1:78300551-78300570 | MS.gene38094:CDS | 35.0% | |
| TTGCATTGCAAAACTCTCTA+AGG | + | chr5.1:78301280-78301299 | None:intergenic | 35.0% | |
| TTTCTTACATGTGAAGTCAG+GGG | + | chr5.1:78300435-78300454 | None:intergenic | 35.0% | |
| ! | AGAGAGTTTTGCAATGCAAA+TGG | - | chr5.1:78301281-78301300 | MS.gene38094:intron | 35.0% |
| ! | CTTTGTCACTTCCAAACTTT+GGG | - | chr5.1:78300595-78300614 | MS.gene38094:CDS | 35.0% |
| ! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.1:78300483-78300502 | None:intergenic | 35.0% |
| ! | TCTTTGTCACTTCCAAACTT+TGG | - | chr5.1:78300594-78300613 | MS.gene38094:CDS | 35.0% |
| ! | TTGAGAGATTTTTGTAGAGC+AGG | + | chr5.1:78300650-78300669 | None:intergenic | 35.0% |
| !! | CATTTGATGTGAAAGGTGTT+TGG | - | chr5.1:78301009-78301028 | MS.gene38094:CDS | 35.0% |
| AAAGAGATTGCAGATGCACA+TGG | - | chr5.1:78301383-78301402 | MS.gene38094:CDS | 40.0% | |
| AAGAGATCTGCCACATCAAT+TGG | + | chr5.1:78300987-78301006 | None:intergenic | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | - | chr5.1:78301557-78301576 | MS.gene38094:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.1:78301039-78301058 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | + | chr5.1:78300635-78300654 | None:intergenic | 40.0% | |
| AGTCATCATAGAGGTCATTG+AGG | + | chr5.1:78301598-78301617 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.1:78301038-78301057 | MS.gene38094:CDS | 40.0% | |
| CTTGGACTCACTAAAGCTAT+TGG | - | chr5.1:78301056-78301075 | MS.gene38094:CDS | 40.0% | |
| GACTCTTCAACTAGACTACT+TGG | - | chr5.1:78300908-78300927 | MS.gene38094:CDS | 40.0% | |
| ! | TTTCCAGGTTGAGAACTAAG+TGG | + | chr5.1:78300954-78300973 | None:intergenic | 40.0% |
| !! | TGGATTTGTTGATTTCGTGC+AGG | - | chr5.1:78300886-78300905 | MS.gene38094:CDS | 40.0% |
| ATTGACTGCTGGAAGAACAG+TGG | + | chr5.1:78301129-78301148 | None:intergenic | 45.0% | |
| CAGAGGACCAAATGAGGTTA+TGG | - | chr5.1:78301346-78301365 | MS.gene38094:intron | 45.0% | |
| TATGGCTCAGAACAAGCTCT+TGG | - | chr5.1:78300521-78300540 | MS.gene38094:CDS | 45.0% | |
| TTTGATACTGCTGCTGCGTA+TGG | - | chr5.1:78300503-78300522 | MS.gene38094:CDS | 45.0% | |
| ! | GGTTCTTTTGTTGCCATGCA+AGG | + | chr5.1:78301259-78301278 | None:intergenic | 45.0% |
| !! | GAAAGGTGTTTGGGAATCCA+TGG | - | chr5.1:78301019-78301038 | MS.gene38094:CDS | 45.0% |
| !! | TCTTGGAGAGGCTTTGAAAG+AGG | - | chr5.1:78300538-78300557 | MS.gene38094:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | - | chr5.1:78301243-78301262 | MS.gene38094:intron | 50.0% | |
| AGGTGTTTGGGAATCCATGG+AGG | - | chr5.1:78301022-78301041 | MS.gene38094:CDS | 50.0% | |
| CTCAGAACAAGCTCTTGGAG+AGG | - | chr5.1:78300526-78300545 | MS.gene38094:CDS | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+CGG | + | chr5.1:78301329-78301348 | None:intergenic | 50.0% | |
| TCATAGAGGTCATTGAGGCC+TGG | + | chr5.1:78301593-78301612 | None:intergenic | 50.0% | |
| TGCAAGCAGAGGACCAAATG+AGG | - | chr5.1:78301340-78301359 | MS.gene38094:intron | 50.0% | |
| ! | TAACTGCGTTTTCGCCGTTG+AGG | - | chr5.1:78301312-78301331 | MS.gene38094:intron | 50.0% |
| ! | TGGCCACTTAGTTCTCAACC+TGG | - | chr5.1:78300948-78300967 | MS.gene38094:CDS | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.1:78301329-78301348 | MS.gene38094:intron | 50.0% |
| GCTGATCCCATTCCAACCAC+AGG | + | chr5.1:78300413-78300432 | None:intergenic | 55.0% | |
| ! | GCGTTTTCGCCGTTGAGGAA+AGG | - | chr5.1:78301317-78301336 | MS.gene38094:intron | 55.0% |
| !! | TCATTGAGGCCTGGCTTGGT+TGG | + | chr5.1:78301584-78301603 | None:intergenic | 55.0% |
| ATCCCTGGACCAACCAAGCC+AGG | - | chr5.1:78301572-78301591 | MS.gene38094:CDS | 60.0% | |
| GAGGTCATTGAGGCCTGGCT+TGG | + | chr5.1:78301588-78301607 | None:intergenic | 60.0% | |
| !! | AGGCCTGGCTTGGTTGGTCC+AGG | + | chr5.1:78301578-78301597 | None:intergenic | 65.0% |
| !! | GGCCTGGCTTGGTTGGTCCA+GGG | + | chr5.1:78301577-78301596 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 78300407 | 78301619 | 78300407 | ID=MS.gene38094 |
| chr5.1 | mRNA | 78300407 | 78301619 | 78300407 | ID=MS.gene38094.t1;Parent=MS.gene38094 |
| chr5.1 | exon | 78301357 | 78301619 | 78301357 | ID=MS.gene38094.t1.exon1;Parent=MS.gene38094.t1 |
| chr5.1 | CDS | 78301357 | 78301619 | 78301357 | ID=cds.MS.gene38094.t1;Parent=MS.gene38094.t1 |
| chr5.1 | exon | 78300875 | 78301118 | 78300875 | ID=MS.gene38094.t1.exon2;Parent=MS.gene38094.t1 |
| chr5.1 | CDS | 78300875 | 78301118 | 78300875 | ID=cds.MS.gene38094.t1;Parent=MS.gene38094.t1 |
| chr5.1 | exon | 78300407 | 78300781 | 78300407 | ID=MS.gene38094.t1.exon3;Parent=MS.gene38094.t1 |
| chr5.1 | CDS | 78300407 | 78300781 | 78300407 | ID=cds.MS.gene38094.t1;Parent=MS.gene38094.t1 |
| Gene Sequence |
| Protein sequence |
