Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82543.t1 | XP_003600926.1 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 4.80E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82543.t1 | G7JBT7 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 3.5e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene82543 | 0.839599 | 1.44E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene82543 | 0.831226 | 1.88E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene82543 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene82543 | 0.802738 | 4.86E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene82543 | 0.814211 | 1.73E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene82543 | 0.807773 | 4.29E-50 | -1.69E-46 |
| MS.gene04939 | MS.gene82543 | 0.818779 | 1.64E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene82543 | 0.837919 | 3.91E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene82543 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene82543 | 0.849233 | 3.69E-60 | -1.69E-46 |
| MS.gene049805 | MS.gene82543 | 0.840327 | 9.29E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene82543 | 0.821972 | 3.04E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene82543 | 0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene82543 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene82543 | 0.836043 | 1.18E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene82543 | 0.8055 | 1.30E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene82543 | 0.82797 | 1.17E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene82543 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene82543 | 0.807558 | 4.77E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene82543 | 0.847211 | 1.34E-59 | -1.69E-46 |
| MS.gene050699 | MS.gene82543 | 0.803528 | 3.34E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene82543 | 0.823049 | 1.71E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene82543 | 0.828333 | 9.53E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene82543 | 0.855728 | 5.19E-62 | -1.69E-46 |
| MS.gene050950 | MS.gene82543 | 0.828856 | 7.12E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene82543 | 0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene82543 | 0.836259 | 1.04E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene82543 | 0.820048 | 8.43E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene82543 | 0.83071 | 2.52E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene82543 | 0.81642 | 5.58E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene82543 | 0.817064 | 4.00E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene82543 | 0.804858 | 1.76E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene82543 | 0.826811 | 2.21E-54 | -1.69E-46 |
| MS.gene052271 | MS.gene82543 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene82543 | 0.812744 | 3.63E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene82543 | 0.846332 | 2.32E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene82543 | 0.801254 | 9.82E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene82543 | 0.80401 | 2.65E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene82543 | 0.861289 | 1.14E-63 | -1.69E-46 |
| MS.gene052870 | MS.gene82543 | 0.850308 | 1.85E-60 | -1.69E-46 |
| MS.gene052872 | MS.gene82543 | 0.853562 | 2.20E-61 | -1.69E-46 |
| MS.gene053009 | MS.gene82543 | 0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene82543 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene053207 | MS.gene82543 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene82543 | 0.810654 | 1.04E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene82543 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene82543 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene053384 | MS.gene82543 | 0.811724 | 6.07E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene82543 | 0.814766 | 1.30E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene82543 | 0.835904 | 1.28E-56 | -1.69E-46 |
| MS.gene053758 | MS.gene82543 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene82543 | 0.884438 | 1.92E-71 | -1.69E-46 |
| MS.gene053916 | MS.gene82543 | 0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene82543 | 0.822726 | 2.03E-53 | -1.69E-46 |
| MS.gene054884 | MS.gene82543 | -0.801282 | 9.69E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene82543 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene82543 | 0.823944 | 1.05E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene82543 | 0.83428 | 3.28E-56 | -1.69E-46 |
| MS.gene055397 | MS.gene82543 | 0.832024 | 1.20E-55 | -1.69E-46 |
| MS.gene055412 | MS.gene82543 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene82543 | 0.822136 | 2.78E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene82543 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene055605 | MS.gene82543 | 0.807147 | 5.83E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene82543 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene82543 | 0.80902 | 2.33E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene82543 | 0.818509 | 1.89E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene82543 | 0.842934 | 1.91E-58 | -1.69E-46 |
| MS.gene056487 | MS.gene82543 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene82543 | 0.80159 | 8.38E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene82543 | 0.828767 | 7.49E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene82543 | 0.865411 | 6.02E-65 | -1.69E-46 |
| MS.gene056657 | MS.gene82543 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene82543 | 0.8305 | 2.84E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene82543 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene056903 | MS.gene82543 | 0.811748 | 6.00E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene82543 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene82543 | 0.875992 | 1.99E-68 | -1.69E-46 |
| MS.gene057124 | MS.gene82543 | 0.812223 | 4.72E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene82543 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene82543 | 0.831065 | 2.06E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene82543 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene82543 | 0.823757 | 1.17E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene82543 | 0.827815 | 1.27E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene82543 | 0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene82543 | 0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene82543 | 0.83308 | 6.55E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene82543 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene82543 | 0.804879 | 1.75E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene82543 | 0.821718 | 3.48E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene82543 | 0.809969 | 1.46E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene82543 | 0.801452 | 8.95E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene82543 | 0.83449 | 2.91E-56 | -1.69E-46 |
| MS.gene059305 | MS.gene82543 | 0.811219 | 7.81E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene82543 | 0.826632 | 2.44E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene82543 | 0.812015 | 5.24E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene82543 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene82543 | 0.826762 | 2.27E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene82543 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene82543 | 0.826733 | 2.31E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene82543 | 0.830637 | 2.63E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene82543 | 0.832723 | 8.03E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene82543 | 0.812861 | 3.43E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene82543 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene82543 | 0.870217 | 1.72E-66 | -1.69E-46 |
| MS.gene060835 | MS.gene82543 | 0.827621 | 1.41E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene82543 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene060981 | MS.gene82543 | 0.812447 | 4.22E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene82543 | 0.842323 | 2.77E-58 | -1.69E-46 |
| MS.gene061051 | MS.gene82543 | -0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene82543 | 0.809609 | 1.74E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene82543 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene82543 | 0.814031 | 1.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82543.t1 | MTR_3g070960 | 95.238 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 2.34e-162 | 448 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82543.t1 | AT3G56010 | 58.519 | 135 | 44 | 4 | 99 | 231 | 77 | 201 | 3.42e-48 | 157 |
Find 53 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCATTAGTCATTAAAA+TGG | 0.237690 | 3.1:-58224060 | None:intergenic |
| AACAAATTACCAGGGGCTTC+TGG | 0.243956 | 3.1:-58223890 | None:intergenic |
| TTCAACAGATGCTAGTAATA+AGG | 0.322512 | 3.1:+58223583 | MS.gene82543:CDS |
| TGAGATGATCGTGTGGTTAC+AGG | 0.325931 | 3.1:-58223725 | None:intergenic |
| TTTGTCAAGGAGAAAAGATT+TGG | 0.326672 | 3.1:+58223527 | MS.gene82543:CDS |
| TTTATCAGCACAGTGATGTT+TGG | 0.378545 | 3.1:+58224004 | MS.gene82543:CDS |
| GTGTGCTCTGAGTGGCCTTC+GGG | 0.390366 | 3.1:-58223475 | None:intergenic |
| AGAAAGTGAGAGAGAGGATA+AGG | 0.396564 | 3.1:+58223747 | MS.gene82543:CDS |
| TCAAAAGTCCAACCTTCCTT+TGG | 0.411926 | 3.1:-58223935 | None:intergenic |
| AGTGTGCTCTGAGTGGCCTT+CGG | 0.416107 | 3.1:-58223476 | None:intergenic |
| GTCTGTGATTCTGCCTGAGC+AGG | 0.422298 | 3.1:-58223659 | None:intergenic |
| GTGGTTACAGGTTGCGACTT+AGG | 0.426739 | 3.1:-58223713 | None:intergenic |
| GGTAGATGTTAACTGATCAT+TGG | 0.433318 | 3.1:-58223633 | None:intergenic |
| CAAACTATCACGATGCATCT+AGG | 0.448156 | 3.1:+58223432 | MS.gene82543:CDS |
| CTGTCATCAAACAAATTACC+AGG | 0.451100 | 3.1:-58223899 | None:intergenic |
| GATGCTAGTAATAAGGATAC+TGG | 0.451608 | 3.1:+58223590 | MS.gene82543:CDS |
| GGCCTTCGGGAAAGAAGCTC+CGG | 0.457076 | 3.1:-58223462 | None:intergenic |
| GAAAGTGAGAGAGAGGATAA+GGG | 0.460702 | 3.1:+58223748 | MS.gene82543:CDS |
| TGATTCTGCCTGAGCAGGAT+TGG | 0.469008 | 3.1:-58223654 | None:intergenic |
| AAAACAGCTAAATCAGAAAT+GGG | 0.480346 | 3.1:+58223803 | MS.gene82543:CDS |
| CGTTGAGGTGAAGCTGATGA+TGG | 0.495454 | 3.1:-58222478 | None:intergenic |
| GCAGATCCATTGGAAACCTC+TGG | 0.503333 | 3.1:-58223683 | None:intergenic |
| AACATCTACCAATCCTGCTC+AGG | 0.512154 | 3.1:+58223646 | MS.gene82543:CDS |
| AGGAGATGCTGCAGATCCAT+TGG | 0.516503 | 3.1:-58223693 | None:intergenic |
| CTAGTAATAAGGATACTGGC+AGG | 0.528322 | 3.1:+58223594 | MS.gene82543:CDS |
| TGCCGGAGCTTCTTTCCCGA+AGG | 0.532920 | 3.1:+58223460 | MS.gene82543:CDS |
| ACTTACATTGTGTGGAAAGT+TGG | 0.543190 | 3.1:+58224031 | MS.gene82543:CDS |
| TTGGAACAACTTACATTGTG+TGG | 0.560213 | 3.1:+58224023 | MS.gene82543:CDS |
| GAGGGATGCCAAAGGAAGGT+TGG | 0.568563 | 3.1:+58223927 | MS.gene82543:CDS |
| CATCTCAGAAAGTGAGAGAG+AGG | 0.580497 | 3.1:+58223741 | MS.gene82543:CDS |
| GTTGAGGTGAAGCTGATGAT+GGG | 0.590259 | 3.1:-58222477 | None:intergenic |
| ACACTCGTTTCGATAACGTC+GGG | 0.594355 | 3.1:+58223494 | MS.gene82543:CDS |
| TTGTTTGATGACAGCAAACG+AGG | 0.599920 | 3.1:+58223908 | MS.gene82543:CDS |
| TCTGGACTTCCAGAAGCCCC+TGG | 0.604678 | 3.1:+58223881 | MS.gene82543:CDS |
| GATGCATCTAGGTATTCTGC+CGG | 0.605736 | 3.1:+58223443 | MS.gene82543:CDS |
| CACTTTCTGAGATGATCGTG+TGG | 0.606839 | 3.1:-58223732 | None:intergenic |
| AAACGAGGGATGCCAAAGGA+AGG | 0.625366 | 3.1:+58223923 | MS.gene82543:CDS |
| TCGAGTTCTTAACCAGTCCA+AGG | 0.632326 | 3.1:+58223775 | MS.gene82543:CDS |
| CATCATCAGCTTCACCTCAA+CGG | 0.635332 | 3.1:+58222479 | MS.gene82543:CDS |
| TAGTAATAAGGATACTGGCA+GGG | 0.635455 | 3.1:+58223595 | MS.gene82543:CDS |
| GGGAACAAGAATGTTTGTCA+AGG | 0.643523 | 3.1:+58223514 | MS.gene82543:CDS |
| CAGCAAACGAGGGATGCCAA+AGG | 0.649716 | 3.1:+58223919 | MS.gene82543:CDS |
| CAGACACCAGAGGTTTCCAA+TGG | 0.649775 | 3.1:+58223677 | MS.gene82543:CDS |
| AGAAAGAGATCAGAACCACC+AGG | 0.655199 | 3.1:-58223962 | None:intergenic |
| TGTTTGATGACAGCAAACGA+GGG | 0.666281 | 3.1:+58223909 | MS.gene82543:CDS |
| AGAAATGGGAAGTAGTGTGT+TGG | 0.668878 | 3.1:+58223817 | MS.gene82543:CDS |
| CACACTCGTTTCGATAACGT+CGG | 0.679278 | 3.1:+58223493 | MS.gene82543:CDS |
| GGCAGAATCACAGACACCAG+AGG | 0.679651 | 3.1:+58223667 | MS.gene82543:CDS |
| TGTCATCAAACAAATTACCA+GGG | 0.683437 | 3.1:-58223898 | None:intergenic |
| AGTGAGAGAGAGGATAAGGG+CGG | 0.687543 | 3.1:+58223751 | MS.gene82543:CDS |
| TTGAGGTGAAGCTGATGATG+GGG | 0.696015 | 3.1:-58222476 | None:intergenic |
| GTCATCAAACAAATTACCAG+GGG | 0.699685 | 3.1:-58223897 | None:intergenic |
| CGAAACGAGTGTGCTCTGAG+TGG | 0.707929 | 3.1:-58223483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAATTGAATTATATTGA+AGG | - | chr3.1:58223347-58223366 | None:intergenic | 15.0% |
| !! | ATTATCTTCTAATATGTAAT+AGG | + | chr3.1:58223287-58223306 | MS.gene82543:intron | 15.0% |
| !! | AAGGAAATATGACTATTTAA+AGG | - | chr3.1:58223007-58223026 | None:intergenic | 20.0% |
| !! | AGGAAATATGACTATTTAAA+GGG | - | chr3.1:58223006-58223025 | None:intergenic | 20.0% |
| !! | ATACTAAACATTATTTGACT+TGG | + | chr3.1:58222673-58222692 | MS.gene82543:intron | 20.0% |
| !! | GTAACAAGTTTATAGATTTA+AGG | + | chr3.1:58222582-58222601 | MS.gene82543:intron | 20.0% |
| !! | TGTAAAAAGTAACAAATATG+TGG | - | chr3.1:58222560-58222579 | None:intergenic | 20.0% |
| !!! | AGTTTATAGATTTAAGGTTA+TGG | + | chr3.1:58222588-58222607 | MS.gene82543:intron | 20.0% |
| !!! | TACTAAACATTATTTGACTT+GGG | + | chr3.1:58222674-58222693 | MS.gene82543:intron | 20.0% |
| ! | AAAAACAGCTAAATCAGAAA+TGG | + | chr3.1:58223802-58223821 | MS.gene82543:CDS | 25.0% |
| ! | AAAACAGCTAAATCAGAAAT+GGG | + | chr3.1:58223803-58223822 | MS.gene82543:CDS | 25.0% |
| ! | CCCAAAATTGACATATAAAA+GGG | - | chr3.1:58223246-58223265 | None:intergenic | 25.0% |
| ! | TAAATAGTCATATTTCCTTG+TGG | + | chr3.1:58223008-58223027 | MS.gene82543:intron | 25.0% |
| ! | TAACAACCTGTTATGTTAAT+CGG | + | chr3.1:58222744-58222763 | MS.gene82543:intron | 25.0% |
| ! | TATAAAATGCGCTATATCTA+TGG | + | chr3.1:58222831-58222850 | MS.gene82543:intron | 25.0% |
| ! | TATTTAAAGGGCTAATTCTA+CGG | - | chr3.1:58222994-58223013 | None:intergenic | 25.0% |
| ! | TCCCAAAATTGACATATAAA+AGG | - | chr3.1:58223247-58223266 | None:intergenic | 25.0% |
| ! | TTAACATAAAGCAATTTCAC+TGG | - | chr3.1:58222811-58222830 | None:intergenic | 25.0% |
| !! | ATTTGCTTGTAATTGATTCT+TGG | + | chr3.1:58222644-58222663 | MS.gene82543:intron | 25.0% |
| !! | CCCTTTTATATGTCAATTTT+GGG | + | chr3.1:58223243-58223262 | MS.gene82543:intron | 25.0% |
| !! | TCCCTTTTATATGTCAATTT+TGG | + | chr3.1:58223242-58223261 | MS.gene82543:intron | 25.0% |
| !!! | ATTTCTGATTTAGCTGTTTT+TGG | - | chr3.1:58223803-58223822 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGATGAAAATGT+TGG | + | chr3.1:58223195-58223214 | MS.gene82543:intron | 25.0% |
| ATCTCAATTGATCCAATTGA+AGG | - | chr3.1:58222919-58222938 | None:intergenic | 30.0% | |
| CAATTGGATCAATTGAGATA+TGG | + | chr3.1:58222920-58222939 | MS.gene82543:intron | 30.0% | |
| CACTATTTGCAACTGAAAAA+CGG | - | chr3.1:58223556-58223575 | None:intergenic | 30.0% | |
| TGAAGGACTTATTGATCAAA+TGG | - | chr3.1:58222902-58222921 | None:intergenic | 30.0% | |
| TGATCAATAAGTCCTTCAAT+TGG | + | chr3.1:58222904-58222923 | MS.gene82543:intron | 30.0% | |
| TGTCATCAAACAAATTACCA+GGG | - | chr3.1:58223901-58223920 | None:intergenic | 30.0% | |
| TTCAACAGATGCTAGTAATA+AGG | + | chr3.1:58223583-58223602 | MS.gene82543:CDS | 30.0% | |
| TTTCATTATCCCTTAGAAGT+TGG | + | chr3.1:58223406-58223425 | MS.gene82543:intron | 30.0% | |
| TTTGTCAAGGAGAAAAGATT+TGG | + | chr3.1:58223527-58223546 | MS.gene82543:CDS | 30.0% | |
| ! | AGTTTGTTTCCAACTTCTAA+GGG | - | chr3.1:58223418-58223437 | None:intergenic | 30.0% |
| ! | TAAGAAGAGTGTGTAAGTTA+TGG | + | chr3.1:58222611-58222630 | MS.gene82543:intron | 30.0% |
| !! | CTTTTAAAGAAAGTGACAGA+GGG | + | chr3.1:58223843-58223862 | MS.gene82543:CDS | 30.0% |
| !! | GGTGAGATTTATTGATTCAA+TGG | + | chr3.1:58222941-58222960 | MS.gene82543:intron | 30.0% |
| !! | TAGTTTGTTTCCAACTTCTA+AGG | - | chr3.1:58223419-58223438 | None:intergenic | 30.0% |
| ACTTACATTGTGTGGAAAGT+TGG | + | chr3.1:58224031-58224050 | MS.gene82543:CDS | 35.0% | |
| CTGTCATCAAACAAATTACC+AGG | - | chr3.1:58223902-58223921 | None:intergenic | 35.0% | |
| CTTTGCAGTTATGTTGTGAT+CGG | + | chr3.1:58223144-58223163 | MS.gene82543:intron | 35.0% | |
| GAACTTAACAAAGATCCACA+AGG | - | chr3.1:58223026-58223045 | None:intergenic | 35.0% | |
| GATGCTAGTAATAAGGATAC+TGG | + | chr3.1:58223590-58223609 | MS.gene82543:CDS | 35.0% | |
| GGTAGATGTTAACTGATCAT+TGG | - | chr3.1:58223636-58223655 | None:intergenic | 35.0% | |
| GTCATCAAACAAATTACCAG+GGG | - | chr3.1:58223900-58223919 | None:intergenic | 35.0% | |
| TAATCGGACACAATATTCCT+GGG | + | chr3.1:58222760-58222779 | MS.gene82543:intron | 35.0% | |
| TAGTAATAAGGATACTGGCA+GGG | + | chr3.1:58223595-58223614 | MS.gene82543:CDS | 35.0% | |
| TTAATCGGACACAATATTCC+TGG | + | chr3.1:58222759-58222778 | MS.gene82543:intron | 35.0% | |
| TTGGAACAACTTACATTGTG+TGG | + | chr3.1:58224023-58224042 | MS.gene82543:CDS | 35.0% | |
| TTGTGTCCGATTAACATAAC+AGG | - | chr3.1:58222753-58222772 | None:intergenic | 35.0% | |
| TTTATCAGCACAGTGATGTT+TGG | + | chr3.1:58224004-58224023 | MS.gene82543:CDS | 35.0% | |
| !! | GCTTTTAAAGAAAGTGACAG+AGG | + | chr3.1:58223842-58223861 | MS.gene82543:CDS | 35.0% |
| !!! | TTTAGCTGTTTTTGGTTCCT+TGG | - | chr3.1:58223795-58223814 | None:intergenic | 35.0% |
| AAAGTGACAGAGGGAAAAAG+AGG | + | chr3.1:58223852-58223871 | MS.gene82543:CDS | 40.0% | |
| AGAAAGTGAGAGAGAGGATA+AGG | + | chr3.1:58223747-58223766 | MS.gene82543:CDS | 40.0% | |
| AGAAATGGGAAGTAGTGTGT+TGG | + | chr3.1:58223817-58223836 | MS.gene82543:CDS | 40.0% | |
| CAAACTATCACGATGCATCT+AGG | + | chr3.1:58223432-58223451 | MS.gene82543:CDS | 40.0% | |
| CATTAAACCAAAGTTCCAGG+TGG | + | chr3.1:58223062-58223081 | MS.gene82543:intron | 40.0% | |
| CTAGTAATAAGGATACTGGC+AGG | + | chr3.1:58223594-58223613 | MS.gene82543:CDS | 40.0% | |
| CTATCATAAGAAGTTCACCC+AGG | - | chr3.1:58222780-58222799 | None:intergenic | 40.0% | |
| CTATGGTGCACATGTTAAGT+AGG | + | chr3.1:58222848-58222867 | MS.gene82543:intron | 40.0% | |
| GAAAGTGAGAGAGAGGATAA+GGG | + | chr3.1:58223748-58223767 | MS.gene82543:CDS | 40.0% | |
| GATAGAAAAACGTACCGTTG+AGG | - | chr3.1:58222496-58222515 | None:intergenic | 40.0% | |
| GGGAACAAGAATGTTTGTCA+AGG | + | chr3.1:58223514-58223533 | MS.gene82543:CDS | 40.0% | |
| GTGCATTAAACCAAAGTTCC+AGG | + | chr3.1:58223059-58223078 | MS.gene82543:intron | 40.0% | |
| TCAAAAGTCCAACCTTCCTT+TGG | - | chr3.1:58223938-58223957 | None:intergenic | 40.0% | |
| ! | GTTAAGTAGGTGCTGTACTA+TGG | + | chr3.1:58222861-58222880 | MS.gene82543:intron | 40.0% |
| ! | TGTTTGATGACAGCAAACGA+GGG | + | chr3.1:58223909-58223928 | MS.gene82543:CDS | 40.0% |
| ! | TTGTTTGATGACAGCAAACG+AGG | + | chr3.1:58223908-58223927 | MS.gene82543:CDS | 40.0% |
| !!! | GGTTGGACTTTTGATTTTCC+TGG | + | chr3.1:58223944-58223963 | MS.gene82543:CDS | 40.0% |
| !!! | TGGACTTTTGATTTTCCTGG+TGG | + | chr3.1:58223947-58223966 | MS.gene82543:CDS | 40.0% |
| AACAAATTACCAGGGGCTTC+TGG | - | chr3.1:58223893-58223912 | None:intergenic | 45.0% | |
| AACATCTACCAATCCTGCTC+AGG | + | chr3.1:58223646-58223665 | MS.gene82543:CDS | 45.0% | |
| ACACTCGTTTCGATAACGTC+GGG | + | chr3.1:58223494-58223513 | MS.gene82543:CDS | 45.0% | |
| AGAAAGAGATCAGAACCACC+AGG | - | chr3.1:58223965-58223984 | None:intergenic | 45.0% | |
| AGAAAGTCCACCTGGAACTT+TGG | - | chr3.1:58223072-58223091 | None:intergenic | 45.0% | |
| CACACTCGTTTCGATAACGT+CGG | + | chr3.1:58223493-58223512 | MS.gene82543:CDS | 45.0% | |
| CATCATCAGCTTCACCTCAA+CGG | + | chr3.1:58222479-58222498 | MS.gene82543:CDS | 45.0% | |
| CATCTCAGAAAGTGAGAGAG+AGG | + | chr3.1:58223741-58223760 | MS.gene82543:CDS | 45.0% | |
| GATGCATCTAGGTATTCTGC+CGG | + | chr3.1:58223443-58223462 | MS.gene82543:CDS | 45.0% | |
| GGGAAAAAGAGGAGAAGATC+TGG | + | chr3.1:58223863-58223882 | MS.gene82543:CDS | 45.0% | |
| GTTGAGGTGAAGCTGATGAT+GGG | - | chr3.1:58222480-58222499 | None:intergenic | 45.0% | |
| TCGAGTTCTTAACCAGTCCA+AGG | + | chr3.1:58223775-58223794 | MS.gene82543:CDS | 45.0% | |
| TGAGATGATCGTGTGGTTAC+AGG | - | chr3.1:58223728-58223747 | None:intergenic | 45.0% | |
| ! | CATTCTAGAGAAAGTCCACC+TGG | - | chr3.1:58223080-58223099 | None:intergenic | 45.0% |
| ! | TTGAGGTGAAGCTGATGATG+GGG | - | chr3.1:58222479-58222498 | None:intergenic | 45.0% |
| !! | CACTTTCTGAGATGATCGTG+TGG | - | chr3.1:58223735-58223754 | None:intergenic | 45.0% |
| !!! | CTGTTTTTGGTTCCTTGGAC+TGG | - | chr3.1:58223790-58223809 | None:intergenic | 45.0% |
| AAACGAGGGATGCCAAAGGA+AGG | + | chr3.1:58223923-58223942 | MS.gene82543:CDS | 50.0% | |
| AGGAGATGCTGCAGATCCAT+TGG | - | chr3.1:58223696-58223715 | None:intergenic | 50.0% | |
| AGTGAGAGAGAGGATAAGGG+CGG | + | chr3.1:58223751-58223770 | MS.gene82543:CDS | 50.0% | |
| CAGACACCAGAGGTTTCCAA+TGG | + | chr3.1:58223677-58223696 | MS.gene82543:CDS | 50.0% | |
| CGTTGAGGTGAAGCTGATGA+TGG | - | chr3.1:58222481-58222500 | None:intergenic | 50.0% | |
| GCAGATCCATTGGAAACCTC+TGG | - | chr3.1:58223686-58223705 | None:intergenic | 50.0% | |
| GTGGTTACAGGTTGCGACTT+AGG | - | chr3.1:58223716-58223735 | None:intergenic | 50.0% | |
| TGATTCTGCCTGAGCAGGAT+TGG | - | chr3.1:58223657-58223676 | None:intergenic | 50.0% | |
| CAGCAAACGAGGGATGCCAA+AGG | + | chr3.1:58223919-58223938 | MS.gene82543:CDS | 55.0% | |
| GAGGGATGCCAAAGGAAGGT+TGG | + | chr3.1:58223927-58223946 | MS.gene82543:CDS | 55.0% | |
| GGCAGAATCACAGACACCAG+AGG | + | chr3.1:58223667-58223686 | MS.gene82543:CDS | 55.0% | |
| GTCTGTGATTCTGCCTGAGC+AGG | - | chr3.1:58223662-58223681 | None:intergenic | 55.0% | |
| ! | AGTGTGCTCTGAGTGGCCTT+CGG | - | chr3.1:58223479-58223498 | None:intergenic | 55.0% |
| ! | CGAAACGAGTGTGCTCTGAG+TGG | - | chr3.1:58223486-58223505 | None:intergenic | 55.0% |
| GGCCTTCGGGAAAGAAGCTC+CGG | - | chr3.1:58223465-58223484 | None:intergenic | 60.0% | |
| TCTGGACTTCCAGAAGCCCC+TGG | + | chr3.1:58223881-58223900 | MS.gene82543:CDS | 60.0% | |
| TGCCGGAGCTTCTTTCCCGA+AGG | + | chr3.1:58223460-58223479 | MS.gene82543:CDS | 60.0% | |
| ! | GTGTGCTCTGAGTGGCCTTC+GGG | - | chr3.1:58223478-58223497 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58222459 | 58224075 | 58222459 | ID=MS.gene82543 |
| chr3.1 | mRNA | 58222459 | 58224075 | 58222459 | ID=MS.gene82543.t1;Parent=MS.gene82543 |
| chr3.1 | exon | 58222459 | 58222500 | 58222459 | ID=MS.gene82543.t1.exon1;Parent=MS.gene82543.t1 |
| chr3.1 | CDS | 58222459 | 58222500 | 58222459 | ID=cds.MS.gene82543.t1;Parent=MS.gene82543.t1 |
| chr3.1 | exon | 58223422 | 58224075 | 58223422 | ID=MS.gene82543.t1.exon2;Parent=MS.gene82543.t1 |
| chr3.1 | CDS | 58223422 | 58224075 | 58223422 | ID=cds.MS.gene82543.t1;Parent=MS.gene82543.t1 |
| Gene Sequence |
| Protein sequence |
