AlfalfaGEDB | MS.gene82543

M. sativa cultivar XinJiangDaYe / MS.gene82543

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82543.t1	XP_003600926.1	95.2	231	11	0	1	231	1	231	4.80E-111	410.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82543.t1	G7JBT7	95.2	231	11	0	1	231	1	231	3.5e-111	410.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene82543	0.839599	1.44E-57	-1.69E-46
MS.gene049222	MS.gene82543	0.831226	1.88E-55	-1.69E-46
MS.gene049285	MS.gene82543	0.810748	9.88E-51	-1.69E-46
MS.gene049320	MS.gene82543	0.802738	4.86E-49	-1.69E-46
MS.gene049356	MS.gene82543	0.814211	1.73E-51	-1.69E-46
MS.gene049369	MS.gene82543	0.807773	4.29E-50	-1.69E-46
MS.gene04939	MS.gene82543	0.818779	1.64E-52	-1.69E-46
MS.gene049427	MS.gene82543	0.837919	3.91E-57	-1.69E-46
MS.gene049609	MS.gene82543	0.820686	6.02E-53	-1.69E-46
MS.gene049633	MS.gene82543	0.849233	3.69E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82543.t1	MTR_3g070960	95.238	231	11	0	1	231	1	231	2.34e-162	448

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82543.t1	AT3G56010	58.519	135	44	4	99	231	77	201	3.42e-48	157

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Find 53 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCTAAATCAGAAAT+GGG	0.480346	3.1:+58223803	MS.gene82543:CDS
AAACGAGGGATGCCAAAGGA+AGG	0.625366	3.1:+58223923	MS.gene82543:CDS
AACAAATTACCAGGGGCTTC+TGG	0.243956	3.1:-58223890	None:intergenic
AACATCTACCAATCCTGCTC+AGG	0.512154	3.1:+58223646	MS.gene82543:CDS
ACACTCGTTTCGATAACGTC+GGG	0.594355	3.1:+58223494	MS.gene82543:CDS
ACTTACATTGTGTGGAAAGT+TGG	0.543190	3.1:+58224031	MS.gene82543:CDS
AGAAAGAGATCAGAACCACC+AGG	0.655199	3.1:-58223962	None:intergenic
AGAAAGTGAGAGAGAGGATA+AGG	0.396564	3.1:+58223747	MS.gene82543:CDS
AGAAATGGGAAGTAGTGTGT+TGG	0.668878	3.1:+58223817	MS.gene82543:CDS
AGGAGATGCTGCAGATCCAT+TGG	0.516503	3.1:-58223693	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCAATTGATCCAATTGA+AGG	-	chr3.1:58222919-58222938	None:intergenic	30.0%
CAATTGGATCAATTGAGATA+TGG	+	chr3.1:58222920-58222939	MS.gene82543:intron	30.0%
CACTATTTGCAACTGAAAAA+CGG	-	chr3.1:58223556-58223575	None:intergenic	30.0%
TGAAGGACTTATTGATCAAA+TGG	-	chr3.1:58222902-58222921	None:intergenic	30.0%
TGATCAATAAGTCCTTCAAT+TGG	+	chr3.1:58222904-58222923	MS.gene82543:intron	30.0%
TGTCATCAAACAAATTACCA+GGG	-	chr3.1:58223901-58223920	None:intergenic	30.0%
TTCAACAGATGCTAGTAATA+AGG	+	chr3.1:58223583-58223602	MS.gene82543:CDS	30.0%
TTTCATTATCCCTTAGAAGT+TGG	+	chr3.1:58223406-58223425	MS.gene82543:intron	30.0%
TTTGTCAAGGAGAAAAGATT+TGG	+	chr3.1:58223527-58223546	MS.gene82543:CDS	30.0%
ACTTACATTGTGTGGAAAGT+TGG	+	chr3.1:58224031-58224050	MS.gene82543:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	58222459	58224075	58222459	ID=MS.gene82543
chr3.1	mRNA	58222459	58224075	58222459	ID=MS.gene82543.t1;Parent=MS.gene82543
chr3.1	exon	58222459	58222500	58222459	ID=MS.gene82543.t1.exon1;Parent=MS.gene82543.t1
chr3.1	CDS	58222459	58222500	58222459	ID=cds.MS.gene82543.t1;Parent=MS.gene82543.t1
chr3.1	exon	58223422	58224075	58223422	ID=MS.gene82543.t1.exon2;Parent=MS.gene82543.t1
chr3.1	CDS	58223422	58224075	58223422	ID=cds.MS.gene82543.t1;Parent=MS.gene82543.t1

Gene Sequence

>MS.gene82543

ATGGCTATATCTCTAAACCCCATCATCAGCTTCACCTCAACGGTACGTTTTTCTATCTTCTCTTACTTTCTAGTATTCTCTAATCACTTTAGTTTCTTCCACATATTTGTTACTTTTTACAGTGTAACAAGTTTATAGATTTAAGGTTATGGTAAGAAGAGTGTGTAAGTTATGGAAATTTACGTATTTGCTTGTAATTGATTCTTGGTTCTGCATACTAAACATTATTTGACTTGGGTTTTTTAGTAATTATATGTGTTGAGAAGCACATATATTTAACAAACTTAACAACCTGTTATGTTAATCGGACACAATATTCCTGGGTGAACTTCTTATGATAGTAATTGTTCCAGTGAAATTGCTTTATGTTAATATAAAATGCGCTATATCTATGGTGCACATGTTAAGTAGGTGCTGTACTATGGAAAAGTTTGTTTCTACCATTTGATCAATAAGTCCTTCAATTGGATCAATTGAGATATGGTGAGATTTATTGATTCAATGGTAAAAAAACTCGTGTTTTACTTGTGCACCGTAGAATTAGCCCTTTAAATAGTCATATTTCCTTGTGGATCTTTGTTAAGTTCATGTTTTGTCAAAGTGCATTAAACCAAAGTTCCAGGTGGACTTTCTCTAGAATGTATGTAGTACTGTAATTCTGTGAAGACAAATTTATTGATTGTAGCTTTGCAGTTATGTTGTGATCGGTTCTTAAGTTATGTATTTGTTAAGAGAGTTGTTTGATGATGAAAATGTTGGTTTAGCTATTGATCAGATTCAGAGTCCCTTTTATATGTCAATTTTGGGATTATTACTCTGAAAAATAAAATTATCTTCTAATATGTAATAGGTTATTAATAACTGTTATTGTGTTTAACATCAATTCCTTCAATATAATTCAATTATGTTAATTTTAACTCTCATTTTTCTGATCACTCACACAAGTCTTTCATTATCCCTTAGAAGTTGGAAACAAACTATCACGATGCATCTAGGTATTCTGCCGGAGCTTCTTTCCCGAAGGCCACTCAGAGCACACTCGTTTCGATAACGTCGGGAACAAGAATGTTTGTCAAGGAGAAAAGATTTGGTCACCGTTTTTCAGTTGCAAATAGTGATCAACTTTCAACAGATGCTAGTAATAAGGATACTGGCAGGGCTGCAGATTCATCTGCCAATGATCAGTTAACATCTACCAATCCTGCTCAGGCAGAATCACAGACACCAGAGGTTTCCAATGGATCTGCAGCATCTCCTAAGTCGCAACCTGTAACCACACGATCATCTCAGAAAGTGAGAGAGAGGATAAGGGCGGCTCGAGTTCTTAACCAGTCCAAGGAACCAAAAACAGCTAAATCAGAAATGGGAAGTAGTGTGTTGGCTGCTTTTAAAGAAAGTGACAGAGGGAAAAAGAGGAGAAGATCTGGACTTCCAGAAGCCCCTGGTAATTTGTTTGATGACAGCAAACGAGGGATGCCAAAGGAAGGTTGGACTTTTGATTTTCCTGGTGGTTCTGATCTCTTTCTGATTATATTTTCTTTTGTCTTTATCAGCACAGTGATGTTTGGAACAACTTACATTGTGTGGAAAGTTGGTGCAATCCATTTTAATGACTAA

Protein sequence

>MS.gene82543.t1

MAISLNPIISFTSTKLETNYHDASRYSAGASFPKATQSTLVSITSGTRMFVKEKRFGHRFSVANSDQLSTDASNKDTGRAADSSANDQLTSTNPAQAESQTPEVSNGSAASPKSQPVTTRSSQKVRERIRAARVLNQSKEPKTAKSEMGSSVLAAFKESDRGKKRRRSGLPEAPGNLFDDSKRGMPKEGWTFDFPGGSDLFLIIFSFVFISTVMFGTTYIVWKVGAIHFND