Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93734.t1 | XP_003631148.1 | 98.7 | 376 | 5 | 0 | 1 | 376 | 13 | 388 | 5.40E-213 | 750 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93734.t1 | Q6ZHE5 | 76.5 | 371 | 86 | 1 | 6 | 376 | 57 | 426 | 1.4e-169 | 597.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93734.t1 | G7LE92 | 98.7 | 376 | 5 | 0 | 1 | 376 | 13 | 388 | 3.9e-213 | 750.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene93734 | 0.838978 | 2.08E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene93734 | 0.845768 | 3.30E-59 | -1.69E-46 |
| MS.gene049232 | MS.gene93734 | 0.834277 | 3.29E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene93734 | 0.865093 | 7.58E-65 | -1.69E-46 |
| MS.gene049313 | MS.gene93734 | -0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene049320 | MS.gene93734 | 0.860341 | 2.21E-63 | -1.69E-46 |
| MS.gene049609 | MS.gene93734 | 0.803164 | 3.97E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene93734 | 0.861647 | 8.85E-64 | -1.69E-46 |
| MS.gene049633 | MS.gene93734 | 0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene049865 | MS.gene93734 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene93734 | 0.868762 | 5.13E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene93734 | 0.8558 | 4.95E-62 | -1.69E-46 |
| MS.gene050165 | MS.gene93734 | 0.862684 | 4.26E-64 | -1.69E-46 |
| MS.gene050170 | MS.gene93734 | 0.839729 | 1.33E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene93734 | 0.816301 | 5.93E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene93734 | 0.84458 | 6.92E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene93734 | 0.833014 | 6.80E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene93734 | 0.878937 | 1.87E-69 | -1.69E-46 |
| MS.gene050518 | MS.gene93734 | 0.875067 | 4.13E-68 | -1.69E-46 |
| MS.gene050577 | MS.gene93734 | 0.84965 | 2.82E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene93734 | 0.859645 | 3.58E-63 | -1.69E-46 |
| MS.gene050675 | MS.gene93734 | 0.840565 | 8.05E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene93734 | 0.854691 | 1.04E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene93734 | 0.821537 | 3.83E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene93734 | 0.800836 | 1.20E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene93734 | 0.828417 | 9.10E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene93734 | 0.827313 | 1.68E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene93734 | 0.898558 | 4.72E-77 | -1.69E-46 |
| MS.gene05087 | MS.gene93734 | 0.870198 | 1.75E-66 | -1.69E-46 |
| MS.gene050904 | MS.gene93734 | 0.880911 | 3.72E-70 | -1.69E-46 |
| MS.gene050986 | MS.gene93734 | 0.875008 | 4.32E-68 | -1.69E-46 |
| MS.gene05100 | MS.gene93734 | 0.811463 | 6.91E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene93734 | 0.801708 | 7.93E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene93734 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene93734 | 0.816354 | 5.78E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene93734 | 0.801714 | 7.91E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene93734 | 0.851341 | 9.45E-61 | -1.69E-46 |
| MS.gene052482 | MS.gene93734 | 0.847774 | 9.35E-60 | -1.69E-46 |
| MS.gene052486 | MS.gene93734 | 0.858377 | 8.59E-63 | -1.69E-46 |
| MS.gene052966 | MS.gene93734 | 0.841551 | 4.44E-58 | -1.69E-46 |
| MS.gene053203 | MS.gene93734 | 0.834988 | 2.18E-56 | -1.69E-46 |
| MS.gene053207 | MS.gene93734 | 0.805515 | 1.29E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene93734 | 0.844853 | 5.85E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene93734 | 0.85266 | 3.99E-61 | -1.69E-46 |
| MS.gene053574 | MS.gene93734 | 0.819892 | 9.15E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene93734 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene93734 | 0.803242 | 3.83E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene93734 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene93734 | 0.848326 | 6.58E-60 | -1.69E-46 |
| MS.gene054638 | MS.gene93734 | 0.828725 | 7.66E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene93734 | 0.827112 | 1.87E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene93734 | 0.851547 | 8.27E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene93734 | 0.874219 | 8.01E-68 | -1.69E-46 |
| MS.gene055362 | MS.gene93734 | 0.872011 | 4.41E-67 | -1.69E-46 |
| MS.gene055502 | MS.gene93734 | 0.831961 | 1.24E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene93734 | 0.854826 | 9.50E-62 | -1.69E-46 |
| MS.gene055634 | MS.gene93734 | 0.810874 | 9.28E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene93734 | 0.846348 | 2.30E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene93734 | 0.844287 | 8.30E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene93734 | 0.860573 | 1.88E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene93734 | 0.851662 | 7.67E-61 | -1.69E-46 |
| MS.gene055849 | MS.gene93734 | 0.8712 | 8.19E-67 | -1.69E-46 |
| MS.gene05589 | MS.gene93734 | 0.844949 | 5.51E-59 | -1.69E-46 |
| MS.gene056409 | MS.gene93734 | 0.852885 | 3.44E-61 | -1.69E-46 |
| MS.gene056449 | MS.gene93734 | 0.802415 | 5.67E-49 | -1.69E-46 |
| MS.gene056450 | MS.gene93734 | 0.857606 | 1.46E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene93734 | 0.861244 | 1.18E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene93734 | 0.864369 | 1.28E-64 | -1.69E-46 |
| MS.gene056610 | MS.gene93734 | 0.862563 | 4.64E-64 | -1.69E-46 |
| MS.gene056657 | MS.gene93734 | 0.845036 | 5.22E-59 | -1.69E-46 |
| MS.gene056692 | MS.gene93734 | 0.854044 | 1.60E-61 | -1.69E-46 |
| MS.gene057684 | MS.gene93734 | 0.812155 | 4.89E-51 | -1.69E-46 |
| MS.gene057687 | MS.gene93734 | 0.833703 | 4.58E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene93734 | 0.843646 | 1.23E-58 | -1.69E-46 |
| MS.gene057872 | MS.gene93734 | 0.860197 | 2.44E-63 | -1.69E-46 |
| MS.gene057986 | MS.gene93734 | 0.834786 | 2.45E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene93734 | 0.812936 | 3.30E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene93734 | 0.839726 | 1.33E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene93734 | 0.813852 | 2.08E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene93734 | 0.862107 | 6.40E-64 | -1.69E-46 |
| MS.gene058773 | MS.gene93734 | 0.885927 | 5.33E-72 | -1.69E-46 |
| MS.gene058838 | MS.gene93734 | 0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene93734 | 0.882762 | 7.93E-71 | -1.69E-46 |
| MS.gene059023 | MS.gene93734 | 0.846207 | 2.51E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene93734 | 0.870795 | 1.11E-66 | -1.69E-46 |
| MS.gene059718 | MS.gene93734 | 0.853693 | 2.02E-61 | -1.69E-46 |
| MS.gene059756 | MS.gene93734 | 0.81462 | 1.40E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene93734 | 0.839929 | 1.18E-57 | -1.69E-46 |
| MS.gene059837 | MS.gene93734 | 0.898912 | 3.33E-77 | -1.69E-46 |
| MS.gene059865 | MS.gene93734 | 0.857546 | 1.52E-62 | -1.69E-46 |
| MS.gene06000 | MS.gene93734 | 0.817711 | 2.86E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene93734 | -0.825376 | 4.85E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene93734 | 0.856162 | 3.88E-62 | -1.69E-46 |
| MS.gene060762 | MS.gene93734 | 0.862312 | 5.54E-64 | -1.69E-46 |
| MS.gene060778 | MS.gene93734 | 0.822189 | 2.71E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene93734 | 0.887442 | 1.42E-72 | -1.69E-46 |
| MS.gene06092 | MS.gene93734 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene93734 | 0.863147 | 3.06E-64 | -1.69E-46 |
| MS.gene061150 | MS.gene93734 | 0.845524 | 3.85E-59 | -1.69E-46 |
| MS.gene061171 | MS.gene93734 | 0.804268 | 2.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93734.t1 | MTR_8g107670 | 98.670 | 376 | 5 | 0 | 1 | 376 | 13 | 388 | 0.0 | 765 |
| MS.gene93734.t1 | MTR_8g107670 | 98.377 | 308 | 5 | 0 | 1 | 308 | 13 | 320 | 0.0 | 622 |
| MS.gene93734.t1 | MTR_8g107670 | 98.551 | 276 | 4 | 0 | 1 | 276 | 13 | 288 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93734.t1 | AT1G48420 | 73.925 | 372 | 97 | 0 | 5 | 376 | 30 | 401 | 0.0 | 572 |
| MS.gene93734.t1 | AT1G48420 | 73.925 | 372 | 97 | 0 | 5 | 376 | 30 | 401 | 0.0 | 572 |
| MS.gene93734.t1 | AT1G48420 | 73.925 | 372 | 97 | 0 | 5 | 376 | 30 | 401 | 0.0 | 572 |
| MS.gene93734.t1 | AT3G26115 | 22.849 | 337 | 203 | 11 | 50 | 344 | 91 | 412 | 6.00e-11 | 63.9 |
| MS.gene93734.t1 | AT3G26115 | 22.849 | 337 | 203 | 11 | 50 | 344 | 8 | 329 | 7.07e-11 | 63.5 |
| MS.gene93734.t1 | AT3G26115 | 22.849 | 337 | 203 | 11 | 50 | 344 | 8 | 329 | 7.07e-11 | 63.5 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCCTTCCCATTTCTT+TGG | 0.168403 | 4.2:-42489 | None:intergenic |
| CTGAAGCGCGACGATCTTTC+TGG | 0.194591 | 4.2:+35020 | MS.gene93734:CDS |
| AATTTGTGAATATTCTTCTT+TGG | 0.263261 | 4.2:-35300 | None:intergenic |
| AAAGAAGAATATTCACAAAT+TGG | 0.296772 | 4.2:+35302 | MS.gene93734:CDS |
| GTACATACAGGTGGCCTCTT+AGG | 0.303821 | 4.2:+42522 | MS.gene93734:CDS |
| TGGGTTCCTTTGTGGGGAAT+TGG | 0.314828 | 4.2:+42568 | MS.gene93734:CDS |
| GCTGATTCTGTTATTACAAT+TGG | 0.315186 | 4.2:+35110 | MS.gene93734:CDS |
| GCTTAGAAGTGCGGAGTATA+AGG | 0.324616 | 4.2:-35199 | None:intergenic |
| TGGAAACAAAGTGCGGAAAT+TGG | 0.338825 | 4.2:+35055 | MS.gene93734:CDS |
| CACAATTGCCGGTTTAGCAC+TGG | 0.344641 | 4.2:+40364 | MS.gene93734:CDS |
| CTTCTTGTTGAGCGTTTGAT+TGG | 0.348706 | 4.2:+35257 | MS.gene93734:CDS |
| GGGGCTACATAGAGGCAGTT+AGG | 0.350018 | 4.2:+39917 | MS.gene93734:intron |
| AGCCACACTTCTGTATTTGC+TGG | 0.350872 | 4.2:-34999 | None:intergenic |
| GATCAGCTGGGTTCCTTTGT+GGG | 0.353254 | 4.2:+42561 | MS.gene93734:CDS |
| TGAATGAAAATCCAAAGAAA+TGG | 0.354272 | 4.2:+42478 | MS.gene93734:CDS |
| CTTTCCAATTCCATCTTGCC+TGG | 0.356939 | 4.2:-42619 | None:intergenic |
| CGATCAGCTGGGTTCCTTTG+TGG | 0.368488 | 4.2:+42560 | MS.gene93734:CDS |
| TGCTTACAGGCCAAGGGTCT+TGG | 0.379002 | 4.2:+40852 | MS.gene93734:intron |
| TGCCAGTGAGGGTGGGATCT+TGG | 0.400276 | 4.2:-35232 | None:intergenic |
| GTTCCCAGGCAAGATGGAAT+TGG | 0.402849 | 4.2:+42615 | MS.gene93734:CDS |
| GCGGAAATTGGAGTTCTTGA+TGG | 0.407020 | 4.2:+35067 | MS.gene93734:CDS |
| TCTGTATTTGCTGGCAGGTT+CGG | 0.409436 | 4.2:-34990 | None:intergenic |
| ACAAAGTTGTGGAAGTAATC+CGG | 0.413991 | 4.2:-40519 | None:intergenic |
| TGATGAACCCAGTGCTAAAC+CGG | 0.425541 | 4.2:-40372 | None:intergenic |
| TACTTCCACAACTTTGTTCA+AGG | 0.425604 | 4.2:+40525 | MS.gene93734:CDS |
| TATGAGAAGGTATGGGGTCT+AGG | 0.430799 | 4.2:-34920 | None:intergenic |
| AGATACAATATGAGAAGGTA+TGG | 0.444228 | 4.2:-34928 | None:intergenic |
| GGGCTACATAGAGGCAGTTA+GGG | 0.449619 | 4.2:+39918 | MS.gene93734:CDS |
| TAACATATGGCCTCCTCCCT+TGG | 0.454510 | 4.2:-35459 | None:intergenic |
| CTTCTTTGGATATAAGTTGA+AGG | 0.456772 | 4.2:-35286 | None:intergenic |
| ACAATTGCCGGTTTAGCACT+GGG | 0.459037 | 4.2:+40365 | MS.gene93734:CDS |
| AGAGAGTTTGATCCGCCAAC+AGG | 0.462134 | 4.2:-35484 | None:intergenic |
| TTTGTTCAAGGCTTGCTTGA+CGG | 0.462516 | 4.2:+40537 | MS.gene93734:CDS |
| ACACTTCTGTATTTGCTGGC+AGG | 0.463369 | 4.2:-34995 | None:intergenic |
| TGTGAATCGGAGTCGGAAGA+TGG | 0.463540 | 4.2:-34956 | None:intergenic |
| TTGTTCTTGACCCGGTATAC+AGG | 0.463568 | 4.2:+40937 | MS.gene93734:CDS |
| TCGAATAAATACCTGTATAC+CGG | 0.463817 | 4.2:-40948 | None:intergenic |
| GTATGACAAGGTCGATCAGC+TGG | 0.464943 | 4.2:+42548 | MS.gene93734:CDS |
| AGCCATACACAGCTCCTTCA+TGG | 0.465709 | 4.2:+34889 | MS.gene93734:CDS |
| GAATGAAAATCCAAAGAAAT+GGG | 0.478205 | 4.2:+42479 | MS.gene93734:CDS |
| GACCAAGATCCCACCCTCAC+TGG | 0.487961 | 4.2:+35230 | MS.gene93734:CDS |
| ATATTGTTGTGGCTTGTGGC+AGG | 0.488200 | 4.2:+39989 | MS.gene93734:CDS |
| CCATATGTTATTCCTGTTGG+CGG | 0.489575 | 4.2:+35472 | MS.gene93734:CDS |
| AAAGAAGTTGCTGAAGCTAC+AGG | 0.491243 | 4.2:+40912 | MS.gene93734:CDS |
| GATTCTGTTATTACAATTGG+AGG | 0.492732 | 4.2:+35113 | MS.gene93734:CDS |
| AGAAGGTATGGGGTCTAGGT+AGG | 0.496529 | 4.2:-34916 | None:intergenic |
| TTTATTCCTTCTCAGCGGTA+AGG | 0.497920 | 4.2:+42431 | MS.gene93734:intron |
| CCGCCAACAGGAATAACATA+TGG | 0.503502 | 4.2:-35472 | None:intergenic |
| AAGATCCTCTTCGTACATAC+AGG | 0.505875 | 4.2:+42510 | MS.gene93734:CDS |
| CATTGCATAGCCAAGACCCT+TGG | 0.507444 | 4.2:-40862 | None:intergenic |
| AGGCCATATGTTATTCCTGT+TGG | 0.513249 | 4.2:+35469 | MS.gene93734:CDS |
| GCCCATGAAGGAGCTGTGTA+TGG | 0.513916 | 4.2:-34891 | None:intergenic |
| GGAAGCTTCCATCTGTGAAT+CGG | 0.515135 | 4.2:-34969 | None:intergenic |
| CAAGTCTCAACAGTGATGGC+GGG | 0.516623 | 4.2:+34846 | None:intergenic |
| ATCCAAAGAAATGGGAAGGA+AGG | 0.517188 | 4.2:+42487 | MS.gene93734:CDS |
| CAAAGTTGTGGAAGTAATCC+GGG | 0.521477 | 4.2:-40518 | None:intergenic |
| GATACAATATGAGAAGGTAT+GGG | 0.525600 | 4.2:-34927 | None:intergenic |
| GAATCTGTTCCCAGGCAAGA+TGG | 0.526272 | 4.2:+42609 | MS.gene93734:CDS |
| AAGAAGATTGCCAGTGAGGG+TGG | 0.528089 | 4.2:-35240 | None:intergenic |
| CCTTGTCATACAATCCTAAG+AGG | 0.528394 | 4.2:-42536 | None:intergenic |
| AGCTCATCAACCAAGGGAGG+AGG | 0.529265 | 4.2:+35449 | MS.gene93734:CDS |
| TTTCCAATTCCATCTTGCCT+GGG | 0.529547 | 4.2:-42618 | None:intergenic |
| TTGCTTGACGGACTCAAAGC+TGG | 0.530861 | 4.2:+40549 | MS.gene93734:CDS |
| CATTGAGTAGCTTGAAAGCA+AGG | 0.540202 | 4.2:+40393 | MS.gene93734:CDS |
| TGGCACGACAGTGATTACTT+TGG | 0.547420 | 4.2:-35139 | None:intergenic |
| GATGATATTGTTGTGGCTTG+TGG | 0.554768 | 4.2:+39985 | MS.gene93734:CDS |
| GTGAATCGGAGTCGGAAGAT+GGG | 0.555114 | 4.2:-34955 | None:intergenic |
| ATTCTCCGTTTGTGATGACC+CGG | 0.556941 | 4.2:+40500 | MS.gene93734:CDS |
| GTAATCCGGGTCATCACAAA+CGG | 0.557799 | 4.2:-40505 | None:intergenic |
| GATCAAACTCTCTCGGAACA+TGG | 0.558246 | 4.2:+35494 | MS.gene93734:CDS |
| ATCAGCTGGGTTCCTTTGTG+GGG | 0.558594 | 4.2:+42562 | MS.gene93734:CDS |
| CTTTCTGGAATGCAATTGAG+TGG | 0.561261 | 4.2:+35035 | MS.gene93734:CDS |
| CGAATAAATACCTGTATACC+GGG | 0.563504 | 4.2:-40947 | None:intergenic |
| TCTACTCAGGGGCTACATAG+AGG | 0.565560 | 4.2:+39909 | MS.gene93734:intron |
| AACAAGAAGATTGCCAGTGA+GGG | 0.566617 | 4.2:-35243 | None:intergenic |
| TACAGGTGTTGTTCTTGACC+CGG | 0.568201 | 4.2:+40929 | MS.gene93734:CDS |
| GCCATACACAGCTCCTTCAT+GGG | 0.568763 | 4.2:+34890 | MS.gene93734:CDS |
| TTCCATCTGTGAATCGGAGT+CGG | 0.579716 | 4.2:-34963 | None:intergenic |
| GAAAATCCAAAGAAATGGGA+AGG | 0.581955 | 4.2:+42483 | MS.gene93734:CDS |
| TTCCGACTCCGATTCACAGA+TGG | 0.583626 | 4.2:+34961 | MS.gene93734:CDS |
| GCAAGCCTTGAACAAAGTTG+TGG | 0.588520 | 4.2:-40530 | None:intergenic |
| TGTGGGGAATTGGCAACGAA+TGG | 0.595485 | 4.2:+42578 | MS.gene93734:CDS |
| GTTGGCGGATCAAACTCTCT+CGG | 0.600283 | 4.2:+35487 | MS.gene93734:CDS |
| TTTAACTGCTTACAGGCCAA+GGG | 0.601343 | 4.2:+40846 | MS.gene93734:intron |
| AGCGGATTCAGCAATTGCAT+CGG | 0.601538 | 4.2:-35090 | None:intergenic |
| TCTAGGTAGGATGCCCATGA+AGG | 0.602506 | 4.2:-34903 | None:intergenic |
| ATGTTAATGAATCTGTTCCC+AGG | 0.603513 | 4.2:+42601 | MS.gene93734:CDS |
| CAACAAGAAGATTGCCAGTG+AGG | 0.606515 | 4.2:-35244 | None:intergenic |
| AAAGAAAAGCTCATCAACCA+AGG | 0.607592 | 4.2:+35442 | MS.gene93734:CDS |
| CAAGTTTGATGATATTGTTG+TGG | 0.625508 | 4.2:+39978 | MS.gene93734:CDS |
| GCAAGAGATACAATATGAGA+AGG | 0.625884 | 4.2:-34933 | None:intergenic |
| TATGACAAGGTCGATCAGCT+GGG | 0.626866 | 4.2:+42549 | MS.gene93734:CDS |
| AGAAGATTGCCAGTGAGGGT+GGG | 0.629815 | 4.2:-35239 | None:intergenic |
| ATTCAAATACTTAGCAGCAA+CGG | 0.630168 | 4.2:-35165 | None:intergenic |
| CTATGCAATGAACACTTCTG+AGG | 0.630985 | 4.2:+40875 | MS.gene93734:CDS |
| ATACTTAGCAGCAACGGCAG+TGG | 0.635268 | 4.2:-35159 | None:intergenic |
| ATTGAGTAGCTTGAAAGCAA+GGG | 0.638253 | 4.2:+40394 | MS.gene93734:CDS |
| ATTGAGCTGCAGATTCAAAG+TGG | 0.643773 | 4.2:+39943 | MS.gene93734:CDS |
| AAAAGCTCATCAACCAAGGG+AGG | 0.644593 | 4.2:+35446 | MS.gene93734:CDS |
| CAACGAGATGCTTAGAAGTG+CGG | 0.644777 | 4.2:-35208 | None:intergenic |
| AAGAAAAGCTCATCAACCAA+GGG | 0.645910 | 4.2:+35443 | MS.gene93734:CDS |
| ATCCTCTTCGTACATACAGG+TGG | 0.648696 | 4.2:+42513 | MS.gene93734:CDS |
| AATTGTAATAACAGAATCAG+CGG | 0.651486 | 4.2:-35108 | None:intergenic |
| CCTCTTAGGATTGTATGACA+AGG | 0.657121 | 4.2:+42536 | MS.gene93734:CDS |
| GAAGTGCGGAGTATAAGGAA+AGG | 0.661921 | 4.2:-35194 | None:intergenic |
| AAGTCTCAACAGTGATGGCG+GGG | 0.666775 | 4.2:+34847 | None:intergenic |
| GGCCACCTGTATGTACGAAG+AGG | 0.673188 | 4.2:-42515 | None:intergenic |
| TGCCAGCAAATACAGAAGTG+TGG | 0.675881 | 4.2:+34997 | MS.gene93734:CDS |
| ATACAATATGAGAAGGTATG+GGG | 0.676303 | 4.2:-34926 | None:intergenic |
| TCGTTGCCAATTCCCCACAA+AGG | 0.683550 | 4.2:-42574 | None:intergenic |
| AATTGAGTGGAAACAAAGTG+CGG | 0.729797 | 4.2:+35048 | MS.gene93734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34861 | 42650 | 34861 | ID=MS.gene93734 |
| chr4.2 | mRNA | 34861 | 42650 | 34861 | ID=MS.gene93734.t1;Parent=MS.gene93734 |
| chr4.2 | exon | 34861 | 35331 | 34861 | ID=MS.gene93734.t1.exon1;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 34861 | 35331 | 34861 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 35424 | 35515 | 35424 | ID=MS.gene93734.t1.exon2;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 35424 | 35515 | 35424 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 39918 | 40010 | 39918 | ID=MS.gene93734.t1.exon3;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 39918 | 40010 | 39918 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 40358 | 40415 | 40358 | ID=MS.gene93734.t1.exon4;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 40358 | 40415 | 40358 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 40492 | 40605 | 40492 | ID=MS.gene93734.t1.exon5;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 40492 | 40605 | 40492 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 40861 | 40958 | 40861 | ID=MS.gene93734.t1.exon6;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 40861 | 40958 | 40861 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| chr4.2 | exon | 42446 | 42650 | 42446 | ID=MS.gene93734.t1.exon7;Parent=MS.gene93734.t1 |
| chr4.2 | CDS | 42446 | 42650 | 42446 | ID=cds.MS.gene93734.t1;Parent=MS.gene93734.t1 |
| Gene Sequence |
| Protein sequence |
