AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000324.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000324.01.T01 MTR_1g018040 93.548 744 21 1 1 744 1 717 0.0 1420
MsG0180000324.01.T01 MTR_1g069630 42.436 747 381 13 6 743 6 712 1.80e-177 525
MsG0180000324.01.T01 MTR_7g097230 41.811 751 390 10 1 743 16 727 2.77e-173 515
MsG0180000324.01.T01 MTR_1g075480 41.200 750 390 11 3 743 24 731 4.16e-167 499
MsG0180000324.01.T01 MTR_1g075480 41.200 750 390 11 3 743 37 744 8.90e-167 499
MsG0180000324.01.T01 MTR_1g075480 41.200 750 393 12 3 743 37 747 9.03e-167 499
MsG0180000324.01.T01 MTR_8g071330 38.292 726 404 8 20 743 2 685 4.59e-160 479
MsG0180000324.01.T01 MTR_5g026810 39.271 741 395 11 6 743 4 692 1.48e-156 471
MsG0180000324.01.T01 MTR_1g075480 42.258 620 337 8 3 616 24 628 2.46e-143 435
MsG0180000324.01.T01 MTR_7g097230 44.262 549 293 7 1 541 16 559 1.96e-129 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000324.01.T01 AT1G27460 55.020 747 278 7 1 743 1 693 0.0 805
MsG0180000324.01.T01 AT1G27460 54.886 747 275 7 1 743 1 689 0.0 803
MsG0180000324.01.T01 AT1G27460 58.727 550 211 3 1 546 1 538 0.0 653
MsG0180000324.01.T01 AT2G43040 40.219 731 378 10 24 743 18 700 3.58e-159 478
MsG0180000324.01.T01 AT2G43040 40.219 731 378 10 24 743 18 700 3.58e-159 478
MsG0180000324.01.T01 AT4G28600 38.808 755 409 13 1 743 25 738 5.16e-149 452
MsG0180000324.01.T01 AT4G28600 38.808 755 409 13 1 743 25 738 5.16e-149 452
MsG0180000324.01.T01 AT4G28600 38.522 758 412 14 1 743 25 743 1.96e-148 451

Find 168 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAGCATGATTTGGATAT+TGG 0.161996 1:-4468774 None:intergenic
TGTCTTGTCTATTATGTTCT+TGG 0.167523 1:-4470272 None:intergenic
TCAACAATCAAATTGTAAAA+TGG 0.184220 1:-4466335 None:intergenic
GGCATTAACGGAACGGAAAT+TGG 0.210728 1:+4469622 MsG0180000324.01.T01:intron
CATACAAAGAAATGAAATAT+TGG 0.271048 1:+4465166 None:intergenic
CTTCAGCTCCTCTAAGGATT+TGG 0.281062 1:-4467165 None:intergenic
ACCTGTAATATGCCAACTTC+TGG 0.294083 1:-4469750 None:intergenic
GCTTAAAGCCAAATCCTTAG+AGG 0.300513 1:+4467157 MsG0180000324.01.T01:CDS
ATCTGCACAGCAGAGGTTTA+AGG 0.303216 1:+4469131 MsG0180000324.01.T01:CDS
CCCAGAAGTTGGCATATTAC+AGG 0.318735 1:+4469749 MsG0180000324.01.T01:CDS
AGCTGCCCTACACGTGCTTC+AGG 0.320041 1:+4466989 MsG0180000324.01.T01:CDS
TCTGGTCAAACCATGGAATT+TGG 0.324195 1:+4468312 MsG0180000324.01.T01:CDS
CTAAATGAAGCTGCTCTAAC+TGG 0.324696 1:+4468961 MsG0180000324.01.T01:CDS
AGCAGTAATAAATGCCAAAA+AGG 0.325256 1:+4469290 MsG0180000324.01.T01:CDS
AAGATGTTGTGTGCTTGTTC+TGG 0.326511 1:+4466360 MsG0180000324.01.T01:exon
GGAATTAAGATCTGTATAAA+TGG 0.329348 1:-4469672 None:intergenic
AAATTCTTGGTGTTTGTTAC+GGG 0.330909 1:+4468872 MsG0180000324.01.T01:CDS
TGGAGCTGCTTCCAAATCTA+TGG 0.333720 1:+4468242 MsG0180000324.01.T01:CDS
GATTGGGATGCTGAAATAAT+TGG 0.335302 1:+4468514 MsG0180000324.01.T01:CDS
TCTTTGAAATTGAACTCTTT+CGG 0.336725 1:-4468923 None:intergenic
ATCAGGAAAGATGGAACTTC+AGG 0.337312 1:+4468486 MsG0180000324.01.T01:CDS
GTTCAAGGCCAACAAATTCT+TGG 0.338655 1:+4468859 MsG0180000324.01.T01:CDS
ATGCCTTCATGAGCATGATT+TGG 0.338766 1:-4468781 None:intergenic
CTGCTAGTGGGTTATCTTCA+AGG 0.339248 1:+4466445 MsG0180000324.01.T01:CDS
CAACAATCAAATTGTAAAAT+GGG 0.341746 1:-4466334 None:intergenic
ATTGTATGGTTACCCTTGTT+TGG 0.343692 1:+4470321 MsG0180000324.01.T01:three_prime_UTR
GAATGCATTGACATCAAATT+AGG 0.345332 1:-4467107 None:intergenic
CAGATCCTACCAGGTATCTT+TGG 0.346103 1:+4468598 MsG0180000324.01.T01:CDS
ATGAGCATGATTTGGATATT+GGG 0.348898 1:-4468773 None:intergenic
CCTGCCTTGATCCATAGATT+TGG 0.349443 1:-4468253 None:intergenic
CAAGGTTGAACCAAGCTTCA+TGG 0.349582 1:-4470097 None:intergenic
GTATTGCTTCAGCTCCTCTA+AGG 0.354042 1:-4467171 None:intergenic
GAAGAGAAGGGTCTCTTTCA+TGG 0.363406 1:+4465334 MsG0180000324.01.T01:five_prime_UTR
CAAATTCTTGGTGTTTGTTA+CGG 0.366837 1:+4468871 MsG0180000324.01.T01:CDS
TTGATACTTGGAATATAATC+AGG 0.370501 1:-4469981 None:intergenic
AAATTTAACTGATAATTCAT+TGG 0.373353 1:-4470412 None:intergenic
ACTGATAATTCATTGGAAAC+AGG 0.378864 1:-4470405 None:intergenic
TAGGTCTCAATAGCTTGCTT+TGG 0.380503 1:-4469255 None:intergenic
ATTGAATCAGCTCTTCCTAA+TGG 0.382528 1:+4468163 MsG0180000324.01.T01:CDS
ATGAAGCTGTCACTGCTTAT+CGG 0.382570 1:+4468284 MsG0180000324.01.T01:CDS
AATCACTCAAACTGTTGAAC+TGG 0.382989 1:-4470200 None:intergenic
GACTGGGATGTTTGAATCAT+TGG 0.390614 1:+4468561 MsG0180000324.01.T01:CDS
TGGTGAAGAATGTAAGTTGC+AGG 0.392513 1:+4468201 MsG0180000324.01.T01:CDS
TACCACAAGCTTTCCTCAAA+AGG 0.405664 1:-4468690 None:intergenic
TAAGGAAGCTAGAGCATTGT+TGG 0.406121 1:+4466935 MsG0180000324.01.T01:intron
TCCCTTGTTGCTAGGGAATC+CGG 0.406701 1:-4466417 None:intergenic
CTTTGACCCCAAGGATGATC+AGG 0.411023 1:+4467027 MsG0180000324.01.T01:CDS
TATCTTCAAGGACTGGAGAC+TGG 0.411122 1:+4466457 MsG0180000324.01.T01:CDS
ACTTAAATTCTTTGTGGTTG+AGG 0.412197 1:+4470236 MsG0180000324.01.T01:three_prime_UTR
ATGTTACTCATTGATGTTGT+TGG 0.414395 1:-4468433 None:intergenic
ATTAATTCTATCAGGAAAGA+TGG 0.416682 1:+4468477 MsG0180000324.01.T01:CDS
CAATAGCCCTGATCATCCTT+GGG 0.421432 1:-4467034 None:intergenic
AGTTTGAGTGATTGAGACTT+TGG 0.424341 1:+4470210 MsG0180000324.01.T01:exon
TTAGCTACCACACTGCTCTA+TGG 0.426482 1:+4468367 MsG0180000324.01.T01:CDS
AACAAACACCAAGAATTTGT+TGG 0.430010 1:-4468867 None:intergenic
ATACCGTCCGGCATTCCATT+AGG 0.430679 1:-4468178 None:intergenic
AAGGAAGCTAGAGCATTGTT+GGG 0.432906 1:+4466936 MsG0180000324.01.T01:intron
TGGCGAACTTAAATTCTTTG+TGG 0.435595 1:+4470230 MsG0180000324.01.T01:three_prime_UTR
TTCGCAGTTGAATTGATACT+TGG 0.437568 1:-4469993 None:intergenic
TAATTTGATGTCAATGCATT+CGG 0.439900 1:+4467109 MsG0180000324.01.T01:CDS
AATGGAATGCCGGACGGTAT+TGG 0.439989 1:+4468181 MsG0180000324.01.T01:CDS
TTTAATGAATGCTTTGCGAT+TGG 0.441748 1:+4470064 MsG0180000324.01.T01:CDS
CTCCTTGGCTCCAAATTCCA+TGG 0.442330 1:-4468322 None:intergenic
TATGGAACCTGAACACTGTT+TGG 0.444119 1:+4469772 MsG0180000324.01.T01:CDS
TGTAGACAGGCCAACCTCCT+TGG 0.444748 1:-4468337 None:intergenic
GTATCTTTGGTCTAGCTGAT+AGG 0.444902 1:+4468611 MsG0180000324.01.T01:CDS
GAAGCAGCTCCAATGCTTTG+TGG 0.446303 1:-4468231 None:intergenic
CACTGCTTATCGGCGTGCTC+TGG 0.446793 1:+4468294 MsG0180000324.01.T01:CDS
CCTTCTCATTTGCAAGTGAA+TGG 0.448121 1:+4468409 MsG0180000324.01.T01:CDS
TGGAACTTCAGGAAATAGAT+TGG 0.449360 1:+4468497 MsG0180000324.01.T01:CDS
AATGGAAGCATGGCAAGATA+TGG 0.451345 1:+4469646 MsG0180000324.01.T01:CDS
CCTGTAATATGCCAACTTCT+GGG 0.451772 1:-4469749 None:intergenic
AAGATGACCAAACAGTGTTC+AGG 0.453061 1:-4469779 None:intergenic
GCAATAGCCCTGATCATCCT+TGG 0.454102 1:-4467035 None:intergenic
GCTCTTTGTTACAGTGCAGC+AGG 0.459269 1:+4468646 MsG0180000324.01.T01:CDS
CTATTAGCTTCAATTTCAAA+AGG 0.464603 1:+4466292 MsG0180000324.01.T01:five_prime_UTR
CATGAAGCTTGGTTCAACCT+TGG 0.464895 1:+4470098 MsG0180000324.01.T01:CDS
GCAAAATTGCCTCAAGAAGC+AGG 0.465479 1:-4467136 None:intergenic
AGACATAAGCAGCGACTGAT+AGG 0.466204 1:+4470290 MsG0180000324.01.T01:three_prime_UTR
AACGGAACGGAAATTGGAAA+TGG 0.469615 1:+4469628 MsG0180000324.01.T01:CDS
GCGAAGTTGTTGATTAAACT+TGG 0.469791 1:+4470011 MsG0180000324.01.T01:CDS
TTTGCACCAAACAAATATGA+AGG 0.477963 1:-4468742 None:intergenic
AGAGAAATCCCTTGTTGCTA+GGG 0.478676 1:-4466424 None:intergenic
CAGAGAAATCCCTTGTTGCT+AGG 0.478806 1:-4466425 None:intergenic
AAAACAGAAAGTTGAAGAGA+AGG 0.481124 1:+4465321 MsG0180000324.01.T01:five_prime_UTR
AGGTAGCACAGTACCCGCTT+TGG 0.485220 1:-4467087 None:intergenic
AGATGCACAGCTGAAACATT+CGG 0.485223 1:-4469818 None:intergenic
AACCAAGCTTCATGGTTTGT+CGG 0.489345 1:-4470089 None:intergenic
TTCTACCTCATAGTTTAATG+AGG 0.502115 1:-4466538 None:intergenic
ATCTTCAAGGACTGGAGACT+GGG 0.505395 1:+4466458 MsG0180000324.01.T01:CDS
GGAACTTCAGGAAATAGATT+GGG 0.515192 1:+4468498 MsG0180000324.01.T01:CDS
AGCTTGGTTCAACCTTGGAT+TGG 0.519014 1:+4470103 MsG0180000324.01.T01:CDS
GAGGTTGGCCTGTCTACAAA+AGG 0.519839 1:+4468342 MsG0180000324.01.T01:CDS
TTCGGTGAGCCTGCTTCTTG+AGG 0.520356 1:+4467127 MsG0180000324.01.T01:CDS
ATGAATCAGTTAACCAAACA+AGG 0.521845 1:-4470334 None:intergenic
AGCTCTTCCTAATGGAATGC+CGG 0.522614 1:+4468171 MsG0180000324.01.T01:CDS
AACAAATATGAAGGAAAATG+AGG 0.527041 1:-4468733 None:intergenic
CCTTGTGAAGGTCGGTATTG+AGG 0.527090 1:+4466261 MsG0180000324.01.T01:intron
AGCCGCCTCATTAAACTATG+AGG 0.527983 1:+4466533 MsG0180000324.01.T01:CDS
CGAAGAGGCACCACAGTCAC+CGG 0.527986 1:+4466398 MsG0180000324.01.T01:CDS
GCTGCCCTACACGTGCTTCA+GGG 0.528614 1:+4466990 MsG0180000324.01.T01:CDS
GAGTTTGCTTTAGATGACAC+TGG 0.530754 1:+4469171 MsG0180000324.01.T01:CDS
AAGTTGGCATATTACAGGTA+TGG 0.533685 1:+4469754 MsG0180000324.01.T01:CDS
TTATCTATCAGAGGCTGCAA+AGG 0.535927 1:+4468117 MsG0180000324.01.T01:intron
AACCGACAAACCATGAAGCT+TGG 0.536001 1:+4470087 MsG0180000324.01.T01:CDS
GAATTTGGAGCCAAGGAGGT+TGG 0.536228 1:+4468327 MsG0180000324.01.T01:CDS
AATACCCTGAAGCACGTGTA+GGG 0.536742 1:-4466994 None:intergenic
ACAAGGGATTTCTCTGCTAG+TGG 0.537197 1:+4466432 MsG0180000324.01.T01:CDS
AACCATGGAATTTGGAGCCA+AGG 0.539099 1:+4468320 MsG0180000324.01.T01:CDS
AGGAAACCTCGGTCCAAAGC+GGG 0.539136 1:+4467074 MsG0180000324.01.T01:CDS
CAGCTTATCAAAACATAATG+AGG 0.540674 1:+4469049 MsG0180000324.01.T01:CDS
GCTTCCAAATCTATGGATCA+AGG 0.541459 1:+4468249 MsG0180000324.01.T01:CDS
GGAAATGTTCCACAAAGCAT+TGG 0.544581 1:+4468222 MsG0180000324.01.T01:CDS
CACCGGATTCCCTAGCAACA+AGG 0.550084 1:+4466415 MsG0180000324.01.T01:CDS
TGAAGCTCAATCATTATACA+AGG 0.550824 1:+4469920 MsG0180000324.01.T01:CDS
TACTGCTAACAAGGTTCTGT+AGG 0.552206 1:-4469274 None:intergenic
TATCCAAATCATGCTCATGA+AGG 0.553335 1:+4468778 MsG0180000324.01.T01:CDS
CCAAATCTATGGATCAAGGC+AGG 0.554355 1:+4468253 MsG0180000324.01.T01:CDS
GGCATTTATTACTGCTAACA+AGG 0.557549 1:-4469283 None:intergenic
AAACAGAAAGTTGAAGAGAA+GGG 0.561065 1:+4465322 MsG0180000324.01.T01:five_prime_UTR
AGTGGGTTATCTTCAAGGAC+TGG 0.563107 1:+4466450 MsG0180000324.01.T01:CDS
TCACTTGCAAATGAGAAGGT+AGG 0.565027 1:-4468405 None:intergenic
CATTCTTCACCAATACCGTC+CGG 0.570943 1:-4468190 None:intergenic
TACCTCATAGTTTAATGAGG+CGG 0.572182 1:-4466535 None:intergenic
AGTTTGCTTTAGATGACACT+GGG 0.572182 1:+4469172 MsG0180000324.01.T01:CDS
TTGGAAGTTCTACAAGAGGT+TGG 0.572389 1:+4469088 MsG0180000324.01.T01:CDS
CAAGGGATTTCTCTGCTAGT+GGG 0.573642 1:+4466433 MsG0180000324.01.T01:CDS
AAGCTAGAGCATTGTTGGGG+AGG 0.574341 1:+4466940 MsG0180000324.01.T01:CDS
TGTGTAGAGCAGATCCTACC+AGG 0.574842 1:+4468589 MsG0180000324.01.T01:CDS
AATTCTTGGTGTTTGTTACG+GGG 0.575668 1:+4468873 MsG0180000324.01.T01:CDS
AACAATCAAATTGTAAAATG+GGG 0.583120 1:-4466333 None:intergenic
GTGGAAGTGATGTTTAGCCT+TGG 0.592412 1:+4468994 MsG0180000324.01.T01:CDS
TTGCTGAGAGAAACAAGCTA+AGG 0.596133 1:+4467054 MsG0180000324.01.T01:CDS
AGGTACTCAGACATGATGGT+TGG 0.597729 1:+4469069 MsG0180000324.01.T01:CDS
ACAGTACCCGCTTTGGACCG+AGG 0.599977 1:-4467080 None:intergenic
CCATTCACTTGCAAATGAGA+AGG 0.606529 1:-4468409 None:intergenic
GACTTGAAAATGCAATTCAG+AGG 0.608528 1:+4469016 MsG0180000324.01.T01:CDS
TCTTTGGTCTAGCTGATAGG+TGG 0.609001 1:+4468614 MsG0180000324.01.T01:CDS
AATGAGGTACTCAGACATGA+TGG 0.610964 1:+4469065 MsG0180000324.01.T01:CDS
CTTCCTAATGGAATGCCGGA+CGG 0.613074 1:+4468175 MsG0180000324.01.T01:CDS
TGGAATCTGTGAAACTGTTG+CGG 0.613740 1:+4465389 MsG0180000324.01.T01:five_prime_UTR
GGAAATTGGAAATGGAAGCA+TGG 0.614368 1:+4469636 MsG0180000324.01.T01:CDS
AAAGGAGTGCAGAACAATTG+TGG 0.615821 1:+4468135 MsG0180000324.01.T01:CDS
ATGGTTGGAAGTTCTACAAG+AGG 0.617168 1:+4469084 MsG0180000324.01.T01:CDS
AGGAAGCTAGAGCATTGTTG+GGG 0.619715 1:+4466937 MsG0180000324.01.T01:intron
TCAGCTAGACCAAAGATACC+TGG 0.621439 1:-4468607 None:intergenic
GGCGTGCTCTGGTCAAACCA+TGG 0.623621 1:+4468305 MsG0180000324.01.T01:CDS
TCATAGTATCTGCACAGCAG+AGG 0.625009 1:+4469124 MsG0180000324.01.T01:CDS
GCTACCACACTGCTCTATGG+TGG 0.625696 1:+4468370 MsG0180000324.01.T01:CDS
ACCGGATTCCCTAGCAACAA+GGG 0.628070 1:+4466416 MsG0180000324.01.T01:CDS
CAATACCCTGAAGCACGTGT+AGG 0.628701 1:-4466995 None:intergenic
ACATCAGTACTTTGACCCCA+AGG 0.628904 1:+4467018 MsG0180000324.01.T01:CDS
CATGGAATTTGGAGCCAAGG+AGG 0.631501 1:+4468323 MsG0180000324.01.T01:CDS
TGCAGCTAGAACATCTGTAG+TGG 0.650193 1:+4468897 MsG0180000324.01.T01:CDS
GGAGGCTTGAATATCAAAGA+GGG 0.650810 1:+4466958 MsG0180000324.01.T01:CDS
TGAATCAGTTAACCAAACAA+GGG 0.656466 1:-4470333 None:intergenic
TTTGACCCCAAGGATGATCA+GGG 0.657698 1:+4467028 MsG0180000324.01.T01:CDS
GAAACAAGCTAAGGAAACCT+CGG 0.659340 1:+4467063 MsG0180000324.01.T01:CDS
GGGAGGCTTGAATATCAAAG+AGG 0.664217 1:+4466957 MsG0180000324.01.T01:CDS
GAGGAGCTGAAGCAATACAC+TGG 0.667577 1:+4467176 MsG0180000324.01.T01:CDS
GCTAGGGAATCCGGTGACTG+TGG 0.672695 1:-4466408 None:intergenic
AAATTTGACAGATTAAACAC+AGG 0.681669 1:+4470429 MsG0180000324.01.T01:three_prime_UTR
AATAGCCCTGATCATCCTTG+GGG 0.686368 1:-4467033 None:intergenic
CTAGACCAAAGATACCTGGT+AGG 0.690219 1:-4468603 None:intergenic
AGAGCAACACAAATTCGAAG+AGG 0.702161 1:+4466383 MsG0180000324.01.T01:CDS
AAGGAAACCTCGGTCCAAAG+CGG 0.708975 1:+4467073 MsG0180000324.01.T01:CDS
TCTAACTGGAAATAATGACG+TGG 0.743819 1:+4468975 MsG0180000324.01.T01:CDS
AACACCACCATAGAGCAGTG+TGG 0.767738 1:-4468374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATTGATTATATATAAT+TGG + Chr1:4465842-4465861 MsG0180000324.01.T01:intron 10.0%
!! AAATTTAACTGATAATTCAT+TGG - Chr1:4470415-4470434 None:intergenic 15.0%
!!! AAAACTTTATACACTTTTTT+GGG + Chr1:4465244-4465263 MsG0180000324.01.T01:five_prime_UTR 15.0%
!!! ATTAGTGATTTGTTAATATA+TGG - Chr1:4469861-4469880 None:intergenic 15.0%
!!! GAAATTTTTGTTAAAAATTC+AGG - Chr1:4469581-4469600 None:intergenic 15.0%
!! AACAATCAAATTGTAAAATG+GGG - Chr1:4466336-4466355 None:intergenic 20.0%
!! AACTTTGAATTATAGGTAAA+AGG + Chr1:4465748-4465767 MsG0180000324.01.T01:intron 20.0%
!! AATATGCAATTACATGATTA+TGG + Chr1:4469878-4469897 MsG0180000324.01.T01:intron 20.0%
!! AATTGTAGTGATAATTGATA+CGG + Chr1:4466207-4466226 MsG0180000324.01.T01:intron 20.0%
!! ACAAGATAATGATTATATGA+AGG - Chr1:4467210-4467229 None:intergenic 20.0%
!! ACTTTGAATTATAGGTAAAA+GGG + Chr1:4465749-4465768 MsG0180000324.01.T01:intron 20.0%
!! ATCATTTCATGAAATAAAGT+TGG + Chr1:4465925-4465944 MsG0180000324.01.T01:intron 20.0%
!! CAACAATCAAATTGTAAAAT+GGG - Chr1:4466337-4466356 None:intergenic 20.0%
!! TAGAAAAAGAAATGACAAAA+AGG - Chr1:4465483-4465502 None:intergenic 20.0%
!! TATTGCATATAATAATGTAG+AGG - Chr1:4469454-4469473 None:intergenic 20.0%
!! TCAACAATCAAATTGTAAAA+TGG - Chr1:4466338-4466357 None:intergenic 20.0%
!! TCATTTCATGAAATAAAGTT+GGG + Chr1:4465926-4465945 MsG0180000324.01.T01:intron 20.0%
!!! ATGTAGAGGATTATTTTTAA+TGG - Chr1:4469440-4469459 None:intergenic 20.0%
!!! ATTTTACAATTTGATTGTTG+AGG + Chr1:4466337-4466356 MsG0180000324.01.T01:five_prime_UTR 20.0%
!!! CTTTTGTTATTAATTCTATC+AGG + Chr1:4468469-4468488 MsG0180000324.01.T01:CDS 20.0%
!!! GAAAACTTTATACACTTTTT+TGG + Chr1:4465243-4465262 MsG0180000324.01.T01:five_prime_UTR 20.0%
!!! TGAACCACTTTTTTATAAAA+TGG - Chr1:4465211-4465230 None:intergenic 20.0%
!!! TTAGTTAAAATGAGTTGAAT+GGG + Chr1:4465867-4465886 MsG0180000324.01.T01:intron 20.0%
!!! TTCTCTGATGTTTATTTTAT+CGG + Chr1:4466766-4466785 MsG0180000324.01.T01:intron 20.0%
!!! TTTAGTTAAAATGAGTTGAA+TGG + Chr1:4465866-4465885 MsG0180000324.01.T01:intron 20.0%
! AAAACACAAATACACAACAA+TGG - Chr1:4465675-4465694 None:intergenic 25.0%
! AAAATGTTGTTAGAGAGTAA+AGG - Chr1:4466573-4466592 None:intergenic 25.0%
! AACAAATATGAAGGAAAATG+AGG - Chr1:4468736-4468755 None:intergenic 25.0%
! AATATGAATTGATGCTAACA+TGG - Chr1:4467341-4467360 None:intergenic 25.0%
! AGAACAAAACTTTCAGTAAT+TGG - Chr1:4467970-4467989 None:intergenic 25.0%
! AGAGAAAAATTCTAGCAATT+GGG - Chr1:4469729-4469748 None:intergenic 25.0%
! AGATAATGATTATATGAAGG+TGG - Chr1:4467207-4467226 None:intergenic 25.0%
! ATAAATAAAGAAACGCGTTA+TGG - Chr1:4466821-4466840 None:intergenic 25.0%
! ATAATGTACTAAAGCAACAT+TGG - Chr1:4466157-4466176 None:intergenic 25.0%
! ATTAATTCTATCAGGAAAGA+TGG + Chr1:4468477-4468496 MsG0180000324.01.T01:CDS 25.0%
! CAAAACAACAATGTACATTA+TGG - Chr1:4467244-4467263 None:intergenic 25.0%
! CATAATGTAACAGCATTTAT+AGG - Chr1:4468051-4468070 None:intergenic 25.0%
! GATAGGAAAAATTCATTGTA+TGG + Chr1:4470307-4470326 MsG0180000324.01.T01:three_prime_UTR 25.0%
! GCAATAACTTTCATTTATTG+TGG + Chr1:4469468-4469487 MsG0180000324.01.T01:intron 25.0%
! GGAATTAAGATCTGTATAAA+TGG - Chr1:4469675-4469694 None:intergenic 25.0%
! GTTAATATATGGTAATACCA+AGG - Chr1:4469850-4469869 None:intergenic 25.0%
! GTTTGGAAATTTCAAAGTTT+CGG + Chr1:4466089-4466108 MsG0180000324.01.T01:intron 25.0%
! TAATTTGATGTCAATGCATT+CGG + Chr1:4467109-4467128 MsG0180000324.01.T01:CDS 25.0%
! TGATCAAGCAAAAATATTCA+GGG + Chr1:4469344-4469363 MsG0180000324.01.T01:CDS 25.0%
! TTGATACTTGGAATATAATC+AGG - Chr1:4469984-4470003 None:intergenic 25.0%
! TTGATCAAGCAAAAATATTC+AGG + Chr1:4469343-4469362 MsG0180000324.01.T01:CDS 25.0%
!! CACTCCATTTTATAAAAAAG+TGG + Chr1:4465204-4465223 MsG0180000324.01.T01:five_prime_UTR 25.0%
!! CATTTTCCTTCATATTTGTT+TGG + Chr1:4468736-4468755 MsG0180000324.01.T01:CDS 25.0%
!! CTATTAGCTTCAATTTCAAA+AGG + Chr1:4466292-4466311 MsG0180000324.01.T01:five_prime_UTR 25.0%
!! TTTTTGTGAAAAGCAATGAT+GGG - Chr1:4465513-4465532 None:intergenic 25.0%
!!! ATATTTTGATTTTCTGTTGC+AGG + Chr1:4465583-4465602 MsG0180000324.01.T01:intron 25.0%
!!! ATTGTTGTTTTGTTTGATTG+AGG + Chr1:4467252-4467271 MsG0180000324.01.T01:intron 25.0%
!!! TCTTTGAAATTGAACTCTTT+CGG - Chr1:4468926-4468945 None:intergenic 25.0%
!!! TTGTTTCTGCTAATATTAGT+TGG + Chr1:4466845-4466864 MsG0180000324.01.T01:intron 25.0%
!!! TTTTTTGTGAAAAGCAATGA+TGG - Chr1:4465514-4465533 None:intergenic 25.0%
AAAACAGAAAGTTGAAGAGA+AGG + Chr1:4465321-4465340 MsG0180000324.01.T01:five_prime_UTR 30.0%
AAACAGAAAGTTGAAGAGAA+GGG + Chr1:4465322-4465341 MsG0180000324.01.T01:five_prime_UTR 30.0%
AAACATCAGAGAAGACATTA+TGG - Chr1:4466759-4466778 None:intergenic 30.0%
AACAAACACCAAGAATTTGT+TGG - Chr1:4468870-4468889 None:intergenic 30.0%
AACATTTCATGGTACAAAGT+TGG + Chr1:4465723-4465742 MsG0180000324.01.T01:intron 30.0%
AATGGGAAGTGATATATGTT+TGG + Chr1:4465884-4465903 MsG0180000324.01.T01:intron 30.0%
AATGTGTAGACATATTGATC+AGG - Chr1:4467893-4467912 None:intergenic 30.0%
AATTTCAAAGTTTCGGTAGA+TGG + Chr1:4466096-4466115 MsG0180000324.01.T01:intron 30.0%
ACATTGTTGCATTGTTTGAT+TGG + Chr1:4467588-4467607 MsG0180000324.01.T01:intron 30.0%
ACATTTCATGGTACAAAGTT+GGG + Chr1:4465724-4465743 MsG0180000324.01.T01:intron 30.0%
ACTGATAATTCATTGGAAAC+AGG - Chr1:4470408-4470427 None:intergenic 30.0%
ACTTAAATTCTTTGTGGTTG+AGG + Chr1:4470236-4470255 MsG0180000324.01.T01:three_prime_UTR 30.0%
ACTTTCATTTATTGTGGTAC+AGG + Chr1:4469474-4469493 MsG0180000324.01.T01:intron 30.0%
AGCAGTAATAAATGCCAAAA+AGG + Chr1:4469290-4469309 MsG0180000324.01.T01:CDS 30.0%
ATGAATCAGTTAACCAAACA+AGG - Chr1:4470337-4470356 None:intergenic 30.0%
ATGTGTAGACATATTGATCA+GGG - Chr1:4467892-4467911 None:intergenic 30.0%
ATGTTACTCATTGATGTTGT+TGG - Chr1:4468436-4468455 None:intergenic 30.0%
ATTAAAAAGCTTCTTGCTAG+TGG - Chr1:4470050-4470069 None:intergenic 30.0%
ATTTCAAAGTTTCGGTAGAT+GGG + Chr1:4466097-4466116 MsG0180000324.01.T01:intron 30.0%
CAATGCAACAATGTAGATTA+TGG - Chr1:4467582-4467601 None:intergenic 30.0%
CAGCTTATCAAAACATAATG+AGG + Chr1:4469049-4469068 MsG0180000324.01.T01:CDS 30.0%
CATAATGTAGCAGCATTTAT+AGG - Chr1:4467705-4467724 None:intergenic 30.0%
CATAATGTAGTAGCATTTAC+AGG - Chr1:4467372-4467391 None:intergenic 30.0%
CATTGTTGCATTGTTTGATT+GGG + Chr1:4467589-4467608 MsG0180000324.01.T01:intron 30.0%
CCAAACTTTATGTCATGAAA+TGG - Chr1:4466075-4466094 None:intergenic 30.0%
CCATTTCATGACATAAAGTT+TGG + Chr1:4466072-4466091 MsG0180000324.01.T01:intron 30.0%
CTGCAAAATATGAAAAGCAA+GGG - Chr1:4469603-4469622 None:intergenic 30.0%
GAGAGAAAAATTCTAGCAAT+TGG - Chr1:4469730-4469749 None:intergenic 30.0%
GCAATTCATATTGTGTTTGT+GGG + Chr1:4466598-4466617 MsG0180000324.01.T01:intron 30.0%
GTGTAGACAAAAAGGTTAAT+GGG - Chr1:4465433-4465452 None:intergenic 30.0%
GTTGGGAAACTTTGAATTAT+AGG + Chr1:4465741-4465760 MsG0180000324.01.T01:intron 30.0%
TAAAACTCAAAACACTGCAA+CGG - Chr1:4467772-4467791 None:intergenic 30.0%
TCTCTCTATCACAATTCAAA+AGG - Chr1:4466654-4466673 None:intergenic 30.0%
TGAAGCTCAATCATTATACA+AGG + Chr1:4469920-4469939 MsG0180000324.01.T01:CDS 30.0%
TGAATCAGTTAACCAAACAA+GGG - Chr1:4470336-4470355 None:intergenic 30.0%
TGCAATTCATATTGTGTTTG+TGG + Chr1:4466597-4466616 MsG0180000324.01.T01:intron 30.0%
TGTATCAACACAACATTTCA+TGG + Chr1:4465712-4465731 MsG0180000324.01.T01:intron 30.0%
TGTCTTGTCTATTATGTTCT+TGG - Chr1:4470275-4470294 None:intergenic 30.0%
TTCTACCTCATAGTTTAATG+AGG - Chr1:4466541-4466560 None:intergenic 30.0%
TTTAATGAATGCTTTGCGAT+TGG + Chr1:4470064-4470083 MsG0180000324.01.T01:CDS 30.0%
TTTAGTTACTTGTGTGTGTT+TGG + Chr1:4465793-4465812 MsG0180000324.01.T01:intron 30.0%
TTTCACAGATTCCAAAAATC+TGG - Chr1:4465383-4465402 None:intergenic 30.0%
TTTGCACCAAACAAATATGA+AGG - Chr1:4468745-4468764 None:intergenic 30.0%
! ATGAGCATGATTTGGATATT+GGG - Chr1:4468776-4468795 None:intergenic 30.0%
! GAATGCATTGACATCAAATT+AGG - Chr1:4467110-4467129 None:intergenic 30.0%
! TCATATTTTGCAGGCATTAA+CGG + Chr1:4469610-4469629 MsG0180000324.01.T01:intron 30.0%
! TGCAAAAAAGTCCAGATTTT+TGG + Chr1:4465369-4465388 MsG0180000324.01.T01:five_prime_UTR 30.0%
!! AAAATGCTCATTTTGATGCT+TGG - Chr1:4468836-4468855 None:intergenic 30.0%
!! AAATTCTTGGTGTTTGTTAC+GGG + Chr1:4468872-4468891 MsG0180000324.01.T01:CDS 30.0%
!! ATGTTACTTTAGTGTGTGTT+TGG + Chr1:4465951-4465970 MsG0180000324.01.T01:intron 30.0%
!! CAAATTCTTGGTGTTTGTTA+CGG + Chr1:4468871-4468890 MsG0180000324.01.T01:CDS 30.0%
!! TTAAAAGTGAGTTGATTGTG+AGG + Chr1:4466016-4466035 MsG0180000324.01.T01:intron 30.0%
!!! AATGAGCATTTTTTGGTTCA+AGG + Chr1:4468844-4468863 MsG0180000324.01.T01:CDS 30.0%
!!! ACTTTATACACTTTTTTGGG+TGG + Chr1:4465247-4465266 MsG0180000324.01.T01:five_prime_UTR 30.0%
!!! GCATCAAAATGAGCATTTTT+TGG + Chr1:4468837-4468856 MsG0180000324.01.T01:CDS 30.0%
!!! TCTGATGTTTATTTTATCGG+TGG + Chr1:4466769-4466788 MsG0180000324.01.T01:intron 30.0%
AACACACTTTGATCCTAACA+TGG - Chr1:4468020-4468039 None:intergenic 35.0%
AAGTTGGCATATTACAGGTA+TGG + Chr1:4469754-4469773 MsG0180000324.01.T01:CDS 35.0%
AATCACTCAAACTGTTGAAC+TGG - Chr1:4470203-4470222 None:intergenic 35.0%
ACATGATTATGGCAATGACA+GGG + Chr1:4469889-4469908 MsG0180000324.01.T01:intron 35.0%
AGCAAAAATATTCAGGGATG+AGG + Chr1:4469350-4469369 MsG0180000324.01.T01:CDS 35.0%
AGTTTGAGTGATTGAGACTT+TGG + Chr1:4470210-4470229 MsG0180000324.01.T01:exon 35.0%
ATCAAACAATACCACAACGA+AGG - Chr1:4467924-4467943 None:intergenic 35.0%
ATTCATATTGTGTTTGTGGG+TGG + Chr1:4466601-4466620 MsG0180000324.01.T01:intron 35.0%
ATTGAATCAGCTCTTCCTAA+TGG + Chr1:4468163-4468182 MsG0180000324.01.T01:CDS 35.0%
ATTGTATGGTTACCCTTGTT+TGG + Chr1:4470321-4470340 MsG0180000324.01.T01:three_prime_UTR 35.0%
CCTGCAAAATATGAAAAGCA+AGG - Chr1:4469604-4469623 None:intergenic 35.0%
CTTGAACAAATCTCCATGTT+AGG + Chr1:4468004-4468023 MsG0180000324.01.T01:intron 35.0%
GAATTGTGATAGAGAGAAGA+TGG + Chr1:4466657-4466676 MsG0180000324.01.T01:intron 35.0%
GACTTGAAAATGCAATTCAG+AGG + Chr1:4469016-4469035 MsG0180000324.01.T01:CDS 35.0%
GATTGGGATGCTGAAATAAT+TGG + Chr1:4468514-4468533 MsG0180000324.01.T01:CDS 35.0%
GGAACTTCAGGAAATAGATT+GGG + Chr1:4468498-4468517 MsG0180000324.01.T01:CDS 35.0%
GGCATTTATTACTGCTAACA+AGG - Chr1:4469286-4469305 None:intergenic 35.0%
GGTGTAGACAAAAAGGTTAA+TGG - Chr1:4465434-4465453 None:intergenic 35.0%
GTGTAAAAGAGATGATGATC+AGG - Chr1:4467554-4467573 None:intergenic 35.0%
TACATGATTATGGCAATGAC+AGG + Chr1:4469888-4469907 MsG0180000324.01.T01:intron 35.0%
TACCTCATAGTTTAATGAGG+CGG - Chr1:4466538-4466557 None:intergenic 35.0%
TATCCAAATCATGCTCATGA+AGG + Chr1:4468778-4468797 MsG0180000324.01.T01:CDS 35.0%
TCTAACTGGAAATAATGACG+TGG + Chr1:4468975-4468994 MsG0180000324.01.T01:CDS 35.0%
TGGAACTTCAGGAAATAGAT+TGG + Chr1:4468497-4468516 MsG0180000324.01.T01:CDS 35.0%
TGGCGAACTTAAATTCTTTG+TGG + Chr1:4470230-4470249 MsG0180000324.01.T01:three_prime_UTR 35.0%
TTCGCAGTTGAATTGATACT+TGG - Chr1:4469996-4470015 None:intergenic 35.0%
TTGATCAGGGTTTCAAATTG+CGG - Chr1:4467879-4467898 None:intergenic 35.0%
TTTCAAAGTTTCGGTAGATG+GGG + Chr1:4466098-4466117 MsG0180000324.01.T01:intron 35.0%
! AACTAGAGAGAATGCGTTTT+TGG + Chr1:4466685-4466704 MsG0180000324.01.T01:intron 35.0%
! AATTTTTCTCTCCCAGAAGT+TGG + Chr1:4469738-4469757 MsG0180000324.01.T01:CDS 35.0%
! ACAAGCTTTTGCATCAAGAA+AGG - Chr1:4469696-4469715 None:intergenic 35.0%
! ACATTTTCGCTTTCAATGAC+TGG + Chr1:4468544-4468563 MsG0180000324.01.T01:CDS 35.0%
! AGCTAAATCCTTTTGTAGAC+AGG - Chr1:4468353-4468372 None:intergenic 35.0%
! AGTTTGCTTTAGATGACACT+GGG + Chr1:4469172-4469191 MsG0180000324.01.T01:CDS 35.0%
! ATTTTCCATAACCTTCGTTG+TGG + Chr1:4467910-4467929 MsG0180000324.01.T01:intron 35.0%
! CATGAGCATGATTTGGATAT+TGG - Chr1:4468777-4468796 None:intergenic 35.0%
! CATTTTCGCTTTCAATGACT+GGG + Chr1:4468545-4468564 MsG0180000324.01.T01:CDS 35.0%
! GCGAAGTTGTTGATTAAACT+TGG + Chr1:4470011-4470030 MsG0180000324.01.T01:CDS 35.0%
! TTGAAGCGAAATCTCCTTTT+TGG - Chr1:4469307-4469326 None:intergenic 35.0%
!! AATTCTTGGTGTTTGTTACG+GGG + Chr1:4468873-4468892 MsG0180000324.01.T01:CDS 35.0%
!! CCTTGCTTTTCATATTTTGC+AGG + Chr1:4469601-4469620 MsG0180000324.01.T01:intron 35.0%
!! CCTTGGATTGGTTTCAAAAA+TGG + Chr1:4470115-4470134 MsG0180000324.01.T01:CDS 35.0%
!! GGATTGGTTTCAAAAATGGA+GGG + Chr1:4470119-4470138 MsG0180000324.01.T01:CDS 35.0%
!! TGGATTGGTTTCAAAAATGG+AGG + Chr1:4470118-4470137 MsG0180000324.01.T01:CDS 35.0%
!!! CCATTTTTGAAACCAATCCA+AGG - Chr1:4470118-4470137 None:intergenic 35.0%
!!! GAATTGCATTTTCAAGTCCA+AGG - Chr1:4469014-4469033 None:intergenic 35.0%
AACGGAACGGAAATTGGAAA+TGG + Chr1:4469628-4469647 MsG0180000324.01.T01:CDS 40.0%
AAGATGACCAAACAGTGTTC+AGG - Chr1:4469782-4469801 None:intergenic 40.0%
AAGATGCAGCTACAATGTTG+CGG - Chr1:4467846-4467865 None:intergenic 40.0%
AAGATGTTGTGTGCTTGTTC+TGG + Chr1:4466360-4466379 MsG0180000324.01.T01:exon 40.0%
AATCACAGTAGAACCCACAA+AGG - Chr1:4467441-4467460 None:intergenic 40.0%
ACACATGGGTGTAGACAAAA+AGG - Chr1:4465441-4465460 None:intergenic 40.0%
ACCTGTAATATGCCAACTTC+TGG - Chr1:4469753-4469772 None:intergenic 40.0%
AGAAACGCGTTATGGTATGT+TGG - Chr1:4466813-4466832 None:intergenic 40.0%
AGAGAAATCCCTTGTTGCTA+GGG - Chr1:4466427-4466446 None:intergenic 40.0%
AGAGCAACACAAATTCGAAG+AGG + Chr1:4466383-4466402 MsG0180000324.01.T01:CDS 40.0%
AGATGCACAGCTGAAACATT+CGG - Chr1:4469821-4469840 None:intergenic 40.0%
ATAGCAAACCCCATGATTGA+TGG - Chr1:4465565-4465584 None:intergenic 40.0%
ATCAGGAAAGATGGAACTTC+AGG + Chr1:4468486-4468505 MsG0180000324.01.T01:CDS 40.0%
ATGAAGCTGTCACTGCTTAT+CGG + Chr1:4468284-4468303 MsG0180000324.01.T01:CDS 40.0%
ATGCCTTCATGAGCATGATT+TGG - Chr1:4468784-4468803 None:intergenic 40.0%
ATGGTTGGAAGTTCTACAAG+AGG + Chr1:4469084-4469103 MsG0180000324.01.T01:CDS 40.0%
ATTGTGAGGTCACTTATGTC+TGG + Chr1:4466030-4466049 MsG0180000324.01.T01:intron 40.0%
CAATACCACAACGAAGGTTA+TGG - Chr1:4467918-4467937 None:intergenic 40.0%
CATGGAGATTGTTCAAGACT+TGG - Chr1:4467323-4467342 None:intergenic 40.0%
CCATTCACTTGCAAATGAGA+AGG - Chr1:4468412-4468431 None:intergenic 40.0%
CCTGTAATATGCCAACTTCT+GGG - Chr1:4469752-4469771 None:intergenic 40.0%
CCTTCTCATTTGCAAGTGAA+TGG + Chr1:4468409-4468428 MsG0180000324.01.T01:CDS 40.0%
CTAAATGAAGCTGCTCTAAC+TGG + Chr1:4468961-4468980 MsG0180000324.01.T01:CDS 40.0%
GAAACAAGCTAAGGAAACCT+CGG + Chr1:4467063-4467082 MsG0180000324.01.T01:CDS 40.0%
GACTGGGATGTTTGAATCAT+TGG + Chr1:4468561-4468580 MsG0180000324.01.T01:CDS 40.0%
GCAGAAGAAGAACAACACAT+GGG - Chr1:4465455-4465474 None:intergenic 40.0%
GCTTAAAGCCAAATCCTTAG+AGG + Chr1:4467157-4467176 MsG0180000324.01.T01:CDS 40.0%
GCTTCCAAATCTATGGATCA+AGG + Chr1:4468249-4468268 MsG0180000324.01.T01:CDS 40.0%
GGAAATGTTCCACAAAGCAT+TGG + Chr1:4468222-4468241 MsG0180000324.01.T01:CDS 40.0%
GGAAATTGGAAATGGAAGCA+TGG + Chr1:4469636-4469655 MsG0180000324.01.T01:CDS 40.0%
GGAGGCTTGAATATCAAAGA+GGG + Chr1:4466958-4466977 MsG0180000324.01.T01:CDS 40.0%
GGTCATTGCAAACTACTTTG+CGG + Chr1:4467746-4467765 MsG0180000324.01.T01:intron 40.0%
GTATCTTTGGTCTAGCTGAT+AGG + Chr1:4468611-4468630 MsG0180000324.01.T01:CDS 40.0%
GTTCAAGGCCAACAAATTCT+TGG + Chr1:4468859-4468878 MsG0180000324.01.T01:CDS 40.0%
TACCACAAGCTTTCCTCAAA+AGG - Chr1:4468693-4468712 None:intergenic 40.0%
TACTGCTAACAAGGTTCTGT+AGG - Chr1:4469277-4469296 None:intergenic 40.0%
TAGCAAACCCCATGATTGAT+GGG - Chr1:4465564-4465583 None:intergenic 40.0%
TATGGAACCTGAACACTGTT+TGG + Chr1:4469772-4469791 MsG0180000324.01.T01:CDS 40.0%
TCACTTGCAAATGAGAAGGT+AGG - Chr1:4468408-4468427 None:intergenic 40.0%
TCAGGAGCTGAATCTAAACT+AGG - Chr1:4469563-4469582 None:intergenic 40.0%
TCTGGTCAAACCATGGAATT+TGG + Chr1:4468312-4468331 MsG0180000324.01.T01:CDS 40.0%
TGCAGAAGAAGAACAACACA+TGG - Chr1:4465456-4465475 None:intergenic 40.0%
TGGAATCTGTGAAACTGTTG+CGG + Chr1:4465389-4465408 MsG0180000324.01.T01:five_prime_UTR 40.0%
TGGGTGGCTGAAATTACATT+TGG + Chr1:4466617-4466636 MsG0180000324.01.T01:intron 40.0%
TGGTGAAGAATGTAAGTTGC+AGG + Chr1:4468201-4468220 MsG0180000324.01.T01:CDS 40.0%
TTATCTATCAGAGGCTGCAA+AGG + Chr1:4468117-4468136 MsG0180000324.01.T01:intron 40.0%
TTCATGCTCCCATCAATCAT+GGG + Chr1:4465553-4465572 MsG0180000324.01.T01:intron 40.0%
TTGCTGAGAGAAACAAGCTA+AGG + Chr1:4467054-4467073 MsG0180000324.01.T01:CDS 40.0%
TTGGAAGTTCTACAAGAGGT+TGG + Chr1:4469088-4469107 MsG0180000324.01.T01:CDS 40.0%
TTTCATGCTCCCATCAATCA+TGG + Chr1:4465552-4465571 MsG0180000324.01.T01:intron 40.0%
! AAAGGAGTGCAGAACAATTG+TGG + Chr1:4468135-4468154 MsG0180000324.01.T01:CDS 40.0%
! AACCAAGCTTCATGGTTTGT+CGG - Chr1:4470092-4470111 None:intergenic 40.0%
! AATGAGGTACTCAGACATGA+TGG + Chr1:4469065-4469084 MsG0180000324.01.T01:CDS 40.0%
! AATGGAAGCATGGCAAGATA+TGG + Chr1:4469646-4469665 MsG0180000324.01.T01:CDS 40.0%
! GAGTTTGCTTTAGATGACAC+TGG + Chr1:4469171-4469190 MsG0180000324.01.T01:CDS 40.0%
! GCTGCTTTCTTATCTATCAG+AGG + Chr1:4468108-4468127 MsG0180000324.01.T01:intron 40.0%
! GTTTCAGCTGTGCATCTTTT+TGG + Chr1:4469824-4469843 MsG0180000324.01.T01:CDS 40.0%
! TGCAGGAACGTGTCAATTTT+TGG + Chr1:4465600-4465619 MsG0180000324.01.T01:intron 40.0%
! TTTTCTTGTGCTCCTTGTGA+AGG + Chr1:4466249-4466268 MsG0180000324.01.T01:intron 40.0%
! TTTTGCAGGCATTAACGGAA+CGG + Chr1:4469615-4469634 MsG0180000324.01.T01:intron 40.0%
!! AACCTTTTGAGGAAAGCTTG+TGG + Chr1:4468688-4468707 MsG0180000324.01.T01:CDS 40.0%
!! AAGGAAGCTAGAGCATTGTT+GGG + Chr1:4466936-4466955 MsG0180000324.01.T01:intron 40.0%
!! TAAGGAAGCTAGAGCATTGT+TGG + Chr1:4466935-4466954 MsG0180000324.01.T01:intron 40.0%
!! TAGGTCTCAATAGCTTGCTT+TGG - Chr1:4469258-4469277 None:intergenic 40.0%
!! TGTGTTTTTGCTGTGTGATG+TGG + Chr1:4467392-4467411 MsG0180000324.01.T01:intron 40.0%
!!! GTGTGTGTTCGTTACTTTTG+AGG + Chr1:4469372-4469391 MsG0180000324.01.T01:intron 40.0%
AACCGACAAACCATGAAGCT+TGG + Chr1:4470087-4470106 MsG0180000324.01.T01:CDS 45.0%
AACCTCATAATGCCGCAATG+TGG - Chr1:4467813-4467832 None:intergenic 45.0%
AATACCCTGAAGCACGTGTA+GGG - Chr1:4466997-4467016 None:intergenic 45.0%
AATAGCCCTGATCATCCTTG+GGG - Chr1:4467036-4467055 None:intergenic 45.0%
ACAAGGGATTTCTCTGCTAG+TGG + Chr1:4466432-4466451 MsG0180000324.01.T01:CDS 45.0%
ACATCAGTACTTTGACCCCA+AGG + Chr1:4467018-4467037 MsG0180000324.01.T01:CDS 45.0%
AGACATAAGCAGCGACTGAT+AGG + Chr1:4470290-4470309 MsG0180000324.01.T01:three_prime_UTR 45.0%
AGCCGCCTCATTAAACTATG+AGG + Chr1:4466533-4466552 MsG0180000324.01.T01:CDS 45.0%
AGCTCTTCCTAATGGAATGC+CGG + Chr1:4468171-4468190 MsG0180000324.01.T01:CDS 45.0%
AGCTTGGTTCAACCTTGGAT+TGG + Chr1:4470103-4470122 MsG0180000324.01.T01:CDS 45.0%
AGGTACTCAGACATGATGGT+TGG + Chr1:4469069-4469088 MsG0180000324.01.T01:CDS 45.0%
ATCTGCACAGCAGAGGTTTA+AGG + Chr1:4469131-4469150 MsG0180000324.01.T01:CDS 45.0%
ATCTTCAAGGACTGGAGACT+GGG + Chr1:4466458-4466477 MsG0180000324.01.T01:CDS 45.0%
ATTGCAGCATGATGCAGTTG+CGG + Chr1:4467476-4467495 MsG0180000324.01.T01:intron 45.0%
CAAGGGATTTCTCTGCTAGT+GGG + Chr1:4466433-4466452 MsG0180000324.01.T01:CDS 45.0%
CAAGGTTGAACCAAGCTTCA+TGG - Chr1:4470100-4470119 None:intergenic 45.0%
CAATAGCCCTGATCATCCTT+GGG - Chr1:4467037-4467056 None:intergenic 45.0%
CAGAGAAATCCCTTGTTGCT+AGG - Chr1:4466428-4466447 None:intergenic 45.0%
CAGATCCTACCAGGTATCTT+TGG + Chr1:4468598-4468617 MsG0180000324.01.T01:CDS 45.0%
CATGAAGCTTGGTTCAACCT+TGG + Chr1:4470098-4470117 MsG0180000324.01.T01:CDS 45.0%
CATTCTTCACCAATACCGTC+CGG - Chr1:4468193-4468212 None:intergenic 45.0%
CCAAATCTATGGATCAAGGC+AGG + Chr1:4468253-4468272 MsG0180000324.01.T01:CDS 45.0%
CCCAGAAGTTGGCATATTAC+AGG + Chr1:4469749-4469768 MsG0180000324.01.T01:CDS 45.0%
CCTGCCTTGATCCATAGATT+TGG - Chr1:4468256-4468275 None:intergenic 45.0%
CTAGACCAAAGATACCTGGT+AGG - Chr1:4468606-4468625 None:intergenic 45.0%
GAAGAGAAGGGTCTCTTTCA+TGG + Chr1:4465334-4465353 MsG0180000324.01.T01:five_prime_UTR 45.0%
GCAAAATTGCCTCAAGAAGC+AGG - Chr1:4467139-4467158 None:intergenic 45.0%
GGCATTAACGGAACGGAAAT+TGG + Chr1:4469622-4469641 MsG0180000324.01.T01:intron 45.0%
GGGAGGCTTGAATATCAAAG+AGG + Chr1:4466957-4466976 MsG0180000324.01.T01:CDS 45.0%
GTATTGCTTCAGCTCCTCTA+AGG - Chr1:4467174-4467193 None:intergenic 45.0%
GTGGAAGTGATGTTTAGCCT+TGG + Chr1:4468994-4469013 MsG0180000324.01.T01:CDS 45.0%
GTGTTTCGGGAGCAATGTTA+TGG - Chr1:4467508-4467527 None:intergenic 45.0%
TATCTTCAAGGACTGGAGAC+TGG + Chr1:4466457-4466476 MsG0180000324.01.T01:CDS 45.0%
TCAGCTAGACCAAAGATACC+TGG - Chr1:4468610-4468629 None:intergenic 45.0%
TCATAGTATCTGCACAGCAG+AGG + Chr1:4469124-4469143 MsG0180000324.01.T01:CDS 45.0%
TCATGCTCCCATCAATCATG+GGG + Chr1:4465554-4465573 MsG0180000324.01.T01:intron 45.0%
TCTTTGGTCTAGCTGATAGG+TGG + Chr1:4468614-4468633 MsG0180000324.01.T01:CDS 45.0%
TGCAGCTAGAACATCTGTAG+TGG + Chr1:4468897-4468916 MsG0180000324.01.T01:CDS 45.0%
TGCTGCAATTGCAGTGTGAT+TGG - Chr1:4467465-4467484 None:intergenic 45.0%
TGGAGCTGCTTCCAAATCTA+TGG + Chr1:4468242-4468261 MsG0180000324.01.T01:CDS 45.0%
TGTAGCTGCATCTTGTGACT+CGG + Chr1:4467852-4467871 MsG0180000324.01.T01:intron 45.0%
TTAGCTACCACACTGCTCTA+TGG + Chr1:4468367-4468386 MsG0180000324.01.T01:CDS 45.0%
TTTACAACCGCACCACATTG+CGG + Chr1:4467798-4467817 MsG0180000324.01.T01:intron 45.0%
TTTGACCCCAAGGATGATCA+GGG + Chr1:4467028-4467047 MsG0180000324.01.T01:CDS 45.0%
! AACCATGGAATTTGGAGCCA+AGG + Chr1:4468320-4468339 MsG0180000324.01.T01:CDS 45.0%
! CGTGATCTTGCTGTGTGATA+CGG + Chr1:4467725-4467744 MsG0180000324.01.T01:intron 45.0%
! CTTCAGCTCCTCTAAGGATT+TGG - Chr1:4467168-4467187 None:intergenic 45.0%
! TAGATGGGGTGTGGCATTTT+TGG + Chr1:4466112-4466131 MsG0180000324.01.T01:intron 45.0%
!! AAGCAGCGTTGAACCTTTTG+AGG + Chr1:4468677-4468696 MsG0180000324.01.T01:CDS 45.0%
!! AGGAAGCTAGAGCATTGTTG+GGG + Chr1:4466937-4466956 MsG0180000324.01.T01:intron 45.0%
!! AGTGGGTTATCTTCAAGGAC+TGG + Chr1:4466450-4466469 MsG0180000324.01.T01:CDS 45.0%
!! CTGCTAGTGGGTTATCTTCA+AGG + Chr1:4466445-4466464 MsG0180000324.01.T01:CDS 45.0%
!! CTTGTGTGTGTTTGGTTCTG+CGG + Chr1:4465801-4465820 MsG0180000324.01.T01:intron 45.0%
!!! TATTATTATTATGAATTTTA+AGG + Chr1:4466917-4466936 MsG0180000324.01.T01:intron 5.0%
AACACCACCATAGAGCAGTG+TGG - Chr1:4468377-4468396 None:intergenic 50.0%
AAGGAAACCTCGGTCCAAAG+CGG + Chr1:4467073-4467092 MsG0180000324.01.T01:CDS 50.0%
AAGTTTCGGTAGATGGGGTG+TGG + Chr1:4466103-4466122 MsG0180000324.01.T01:intron 50.0%
AATGGAATGCCGGACGGTAT+TGG + Chr1:4468181-4468200 MsG0180000324.01.T01:CDS 50.0%
ACCGGATTCCCTAGCAACAA+GGG + Chr1:4466416-4466435 MsG0180000324.01.T01:CDS 50.0%
ATACCGTCCGGCATTCCATT+AGG - Chr1:4468181-4468200 None:intergenic 50.0%
CAATACCCTGAAGCACGTGT+AGG - Chr1:4466998-4467017 None:intergenic 50.0%
CACAAAGGCCGCAAAGTAGT+GGG - Chr1:4467426-4467445 None:intergenic 50.0%
CACCACATTGCGGCATTATG+AGG + Chr1:4467808-4467827 MsG0180000324.01.T01:intron 50.0%
CACTACTTTGCGGCCTTTGT+GGG + Chr1:4467425-4467444 MsG0180000324.01.T01:intron 50.0%
CAGACCACATCACGTGTTTC+GGG - Chr1:4467521-4467540 None:intergenic 50.0%
CATAATGCCGCAATGTGGTG+CGG - Chr1:4467808-4467827 None:intergenic 50.0%
CCTCAATACCGACCTTCACA+AGG - Chr1:4466264-4466283 None:intergenic 50.0%
CCTTGTGAAGGTCGGTATTG+AGG + Chr1:4466261-4466280 MsG0180000324.01.T01:intron 50.0%
CTCCTTGGCTCCAAATTCCA+TGG - Chr1:4468325-4468344 None:intergenic 50.0%
CTTCCTAATGGAATGCCGGA+CGG + Chr1:4468175-4468194 MsG0180000324.01.T01:CDS 50.0%
CTTGTGCTCCTTGTGAAGGT+CGG + Chr1:4466253-4466272 MsG0180000324.01.T01:intron 50.0%
CTTTGACCCCAAGGATGATC+AGG + Chr1:4467027-4467046 MsG0180000324.01.T01:CDS 50.0%
GAAGCAGCTCCAATGCTTTG+TGG - Chr1:4468234-4468253 None:intergenic 50.0%
GAGGAGCTGAAGCAATACAC+TGG + Chr1:4467176-4467195 MsG0180000324.01.T01:CDS 50.0%
GCAATAGCCCTGATCATCCT+TGG - Chr1:4467038-4467057 None:intergenic 50.0%
GCAGACCACATCACGTGTTT+CGG - Chr1:4467522-4467541 None:intergenic 50.0%
GCTCTTTGTTACAGTGCAGC+AGG + Chr1:4468646-4468665 MsG0180000324.01.T01:CDS 50.0%
GGTTAATGGGAACGCAGCTT+TGG - Chr1:4465420-4465439 None:intergenic 50.0%
TCCCTTGTTGCTAGGGAATC+CGG - Chr1:4466420-4466439 None:intergenic 50.0%
TGTGTAGAGCAGATCCTACC+AGG + Chr1:4468589-4468608 MsG0180000324.01.T01:CDS 50.0%
! CATGGAATTTGGAGCCAAGG+AGG + Chr1:4468323-4468342 MsG0180000324.01.T01:CDS 50.0%
! GAATTTGGAGCCAAGGAGGT+TGG + Chr1:4468327-4468346 MsG0180000324.01.T01:CDS 50.0%
!! AAGCTAGAGCATTGTTGGGG+AGG + Chr1:4466940-4466959 MsG0180000324.01.T01:CDS 50.0%
!! GAGGTTGGCCTGTCTACAAA+AGG + Chr1:4468342-4468361 MsG0180000324.01.T01:CDS 50.0%
!! GCTGTGCATCTTTTTGGCCT+TGG + Chr1:4469830-4469849 MsG0180000324.01.T01:CDS 50.0%
AGGAAACCTCGGTCCAAAGC+GGG + Chr1:4467074-4467093 MsG0180000324.01.T01:CDS 55.0%
AGGTAGCACAGTACCCGCTT+TGG - Chr1:4467090-4467109 None:intergenic 55.0%
CACCGGATTCCCTAGCAACA+AGG + Chr1:4466415-4466434 MsG0180000324.01.T01:CDS 55.0%
CCACAAAGGCCGCAAAGTAG+TGG - Chr1:4467427-4467446 None:intergenic 55.0%
CCACTACTTTGCGGCCTTTG+TGG + Chr1:4467424-4467443 MsG0180000324.01.T01:intron 55.0%
CCGTTGCACCCACTACTTTG+CGG + Chr1:4467415-4467434 MsG0180000324.01.T01:intron 55.0%
GCTACCACACTGCTCTATGG+TGG + Chr1:4468370-4468389 MsG0180000324.01.T01:CDS 55.0%
TGCTCCCGAAACACGTGATG+TGG + Chr1:4467514-4467533 MsG0180000324.01.T01:intron 55.0%
TGTAGACAGGCCAACCTCCT+TGG - Chr1:4468340-4468359 None:intergenic 55.0%
TTCGGTGAGCCTGCTTCTTG+AGG + Chr1:4467127-4467146 MsG0180000324.01.T01:CDS 55.0%
!! CCGCAAAGTAGTGGGTGCAA+CGG - Chr1:4467418-4467437 None:intergenic 55.0%
AGCTGCCCTACACGTGCTTC+AGG + Chr1:4466989-4467008 MsG0180000324.01.T01:CDS 60.0%
CACTGCTTATCGGCGTGCTC+TGG + Chr1:4468294-4468313 MsG0180000324.01.T01:CDS 60.0%
GCTAGGGAATCCGGTGACTG+TGG - Chr1:4466411-4466430 None:intergenic 60.0%
GCTGCCCTACACGTGCTTCA+GGG + Chr1:4466990-4467009 MsG0180000324.01.T01:CDS 60.0%
GGCGTGCTCTGGTCAAACCA+TGG + Chr1:4468305-4468324 MsG0180000324.01.T01:CDS 60.0%
! ACAGTACCCGCTTTGGACCG+AGG - Chr1:4467083-4467102 None:intergenic 60.0%
!! CGAAGAGGCACCACAGTCAC+CGG + Chr1:4466398-4466417 MsG0180000324.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4465167 4470448 4465167 ID=MsG0180000324.01;Name=MsG0180000324.01
Chr1 mRNA 4465167 4470448 4465167 ID=MsG0180000324.01.T01;Parent=MsG0180000324.01;Name=MsG0180000324.01.T01;_AED=0.23;_eAED=0.25;_QI=336|0.8|0.83|1|0.8|0.66|6|228|744
Chr1 exon 4469910 4470448 4469910 ID=MsG0180000324.01.T01:exon:5543;Parent=MsG0180000324.01.T01
Chr1 exon 4469623 4469851 4469623 ID=MsG0180000324.01.T01:exon:5542;Parent=MsG0180000324.01.T01
Chr1 exon 4468128 4469371 4468128 ID=MsG0180000324.01.T01:exon:5541;Parent=MsG0180000324.01.T01
Chr1 exon 4466939 4467197 4466939 ID=MsG0180000324.01.T01:exon:5540;Parent=MsG0180000324.01.T01
Chr1 exon 4466271 4466554 4466271 ID=MsG0180000324.01.T01:exon:5539;Parent=MsG0180000324.01.T01
Chr1 exon 4465167 4465410 4465167 ID=MsG0180000324.01.T01:exon:5538;Parent=MsG0180000324.01.T01
Chr1 five_prime_UTR 4465167 4465410 4465167 ID=MsG0180000324.01.T01:five_prime_utr;Parent=MsG0180000324.01.T01
Chr1 five_prime_UTR 4466271 4466362 4466271 ID=MsG0180000324.01.T01:five_prime_utr;Parent=MsG0180000324.01.T01
Chr1 CDS 4466363 4466554 4466363 ID=MsG0180000324.01.T01:cds;Parent=MsG0180000324.01.T01
Chr1 CDS 4466939 4467197 4466939 ID=MsG0180000324.01.T01:cds;Parent=MsG0180000324.01.T01
Chr1 CDS 4468128 4469371 4468128 ID=MsG0180000324.01.T01:cds;Parent=MsG0180000324.01.T01
Chr1 CDS 4469623 4469851 4469623 ID=MsG0180000324.01.T01:cds;Parent=MsG0180000324.01.T01
Chr1 CDS 4469910 4470220 4469910 ID=MsG0180000324.01.T01:cds;Parent=MsG0180000324.01.T01
Chr1 three_prime_UTR 4470221 4470448 4470221 ID=MsG0180000324.01.T01:three_prime_utr;Parent=MsG0180000324.01.T01
Gene Sequence

>MsG0180000324.01.T01

ATGTTGTGTGCTTGTTCTGGAGAGCAACACAAATTCGAAGAGGCACCACAGTCACCGGATTCCCTAGCAACAAGGGATTTCTCTGCTAGTGGGTTATCTTCAAGGACTGGAGACTGGGATTCAAAACTAAATGAAAATCAAGTTGAAGATGCTGAATCTTCTCTAAAAGAAGCCGCCTCATTAAACTATGAGGAAGCTAGAGCATTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGAAGCTGCCCTACACGTGCTTCAGGGTATTGACATCAGTACTTTGACCCCAAGGATGATCAGGGCTATTGCTGAGAGAAACAAGCTAAGGAAACCTCGGTCCAAAGCGGGTACTGTGCTACCTAATTTGATGTCAATGCATTCGGTGAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAGCTGAAGCAATACACTGAGGCTGCAAAGGAGTGCAGAACAATTGTGGATACAATTGAATCAGCTCTTCCTAATGGAATGCCGGACGGTATTGGTGAAGAATGTAAGTTGCAGGAAATGTTCCACAAAGCATTGGAGCTGCTTCCAAATCTATGGATCAAGGCAGGTTTTCTAGATGAAGCTGTCACTGCTTATCGGCGTGCTCTGGTCAAACCATGGAATTTGGAGCCAAGGAGGTTGGCCTGTCTACAAAAGGATTTAGCTACCACACTGCTCTATGGTGGTGTTGAAGTAAACCTACCTTCTCATTTGCAAGTGAATGGTCCAACAACATCAATGAGTAACATTGAAGAAGCAATACTTTTGTTATTAATTCTATCAGGAAAGATGGAACTTCAGGAAATAGATTGGGATGCTGAAATAATTGGTCATCTTACATTTTCGCTTTCAATGACTGGGATGTTTGAATCATTGGCAGACTGTGTAGAGCAGATCCTACCAGGTATCTTTGGTCTAGCTGATAGGTGGTACTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAAAATGAAGCAGCGTTGAACCTTTTGAGGAAAGCTTGTGGTAGTTCTGAATCAAAGCATATGCCTCATTTTCCTTCATATTTGTTTGGTGCAAAACTGTGTTCCCAATATCCAAATCATGCTCATGAAGGCATCAAATTTTCACAGCAAGTTATCAATCTAGCCAAGCATCAAAATGAGCATTTTTTGGTTCAAGGCCAACAAATTCTTGGTGTTTGTTACGGGGCTGCAGCTAGAACATCTGTAGTGGATTCCGAAAGAGTTCAATTTCAAAGAGAGTCTTTGAACTTTCTAAATGAAGCTGCTCTAACTGGAAATAATGACGTGGAAGTGATGTTTAGCCTTGGACTTGAAAATGCAATTCAGAGGAATCTAGATGCAGCTTATCAAAACATAATGAGGTACTCAGACATGATGGTTGGAAGTTCTACAAGAGGTTGGCAGCTGTTAGCTCTCATAGTATCTGCACAGCAGAGGTTTAAGGACGCAGAAACTATAGTTGAGTTTGCTTTAGATGACACTGGGAGCGTTGATCAGTTAGAGCTACTTCGACTCAAAGCTGTACTTCAAATTGCGCAGCAGCAACCAAAGCAAGCTATTGAGACCTACAGAACCTTGTTAGCAGTAATAAATGCCAAAAAGGAGATTTCGCTTCAAGCTAAGAGCTTTGAGTTTGATCAAGCAAAAATATTCAGGGATGAGGCATTAACGGAACGGAAATTGGAAATGGAAGCATGGCAAGATATGGCAACCATTTATACAGATCTTAATTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGCTAGAATTTTTCTCTCCCAGAAGTTGGCATATTACAGGTATGGAACCTGAACACTGTTTGGTCATCTTTGTTATTGATGATAAGCCGAATGTTTCAGCTGTGCATCTTTTTGGCCTTGGGATGTTGTTTGAAGCTCAATCATTATACAAGGAAGCGTTTGTTTCGTTCTCAATCTCGTTGTCAATAGAACCTGATTATATTCCAAGTATCAATTCAACTGCGAAGTTGTTGATTAAACTTGGTATGCAATCACTTCCACTAGCAAGAAGCTTTTTAATGAATGCTTTGCGATTGGAACCGACAAACCATGAAGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAGGGTTCATTAGAACAAGCTGCAGATTGCTTTCAAGCTGCATATGAGCTGAAGCTTTCAACTCCAGTTCAACAGTTTGAGTGA
Protein sequence

>MsG0180000324.01.T01

MLCACSGEQHKFEEAPQSPDSLATRDFSASGLSSRTGDWDSKLNENQVEDAESSLKEAASLNYEEARALLGRLEYQRGNFEAALHVLQGIDISTLTPRMIRAIAERNKLRKPRSKAGTVLPNLMSMHSVSLLLEAILLKAKSLEELKQYTEAAKECRTIVDTIESALPNGMPDGIGEECKLQEMFHKALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEPRRLACLQKDLATTLLYGGVEVNLPSHLQVNGPTTSMSNIEEAILLLLILSGKMELQEIDWDAEIIGHLTFSLSMTGMFESLADCVEQILPGIFGLADRWYFLALCYSAAGQNEAALNLLRKACGSSESKHMPHFPSYLFGAKLCSQYPNHAHEGIKFSQQVINLAKHQNEHFLVQGQQILGVCYGAAARTSVVDSERVQFQRESLNFLNEAALTGNNDVEVMFSLGLENAIQRNLDAAYQNIMRYSDMMVGSSTRGWQLLALIVSAQQRFKDAETIVEFALDDTGSVDQLELLRLKAVLQIAQQQPKQAIETYRTLLAVINAKKEISLQAKSFEFDQAKIFRDEALTERKLEMEAWQDMATIYTDLNSFLDAKACVDKAQLLEFFSPRSWHITGMEPEHCLVIFVIDDKPNVSAVHLFGLGMLFEAQSLYKEAFVSFSISLSIEPDYIPSINSTAKLLIKLGMQSLPLARSFLMNALRLEPTNHEAWFNLGLVSKMEGSLEQAADCFQAAYELKLSTPVQQFE*