Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021492.01.T01 | AES89402.1 | 96.429 | 140 | 5 | 0 | 1 | 140 | 1 | 140 | 1.55E-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021492.01.T01 | Q84WS8 | 63.38 | 142 | 47 | 2 | 3 | 141 | 2 | 141 | 1.55E-50 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021492.01.T01 | A0A072URE6 | 96.429 | 140 | 5 | 0 | 1 | 140 | 254 | 393 | 2.41e-91 | 280 |
| MsG0480021492.01.T01 | G7JNG0 | 96.429 | 140 | 5 | 0 | 1 | 140 | 1 | 140 | 7.42e-94 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048307.01 | MsG0480021492.01 | 0.801963 | 7.027303e-49 | 3.400734e-46 |
| MsG0180000114.01 | MsG0480021492.01 | 0.811879 | 5.613105e-51 | 3.515262e-48 |
| MsG0180000355.01 | MsG0480021492.01 | 0.805233 | 1.473901e-49 | 7.756678e-47 |
| MsG0180000611.01 | MsG0480021492.01 | 0.800734 | 1.254517e-48 | 5.885254e-46 |
| MsG0180000787.01 | MsG0480021492.01 | 0.813878 | 2.047872e-51 | 1.353431e-48 |
| MsG0180001002.01 | MsG0480021492.01 | 0.818664 | 1.741742e-52 | 1.311848e-49 |
| MsG0180001311.01 | MsG0480021492.01 | 0.817108 | 3.911542e-52 | 2.822938e-49 |
| MsG0180002664.01 | MsG0480021492.01 | 0.821124 | 4.769675e-53 | 3.846804e-50 |
| MsG0180002794.01 | MsG0480021492.01 | 0.800024 | 1.749395e-48 | 8.060468e-46 |
| MsG0180002992.01 | MsG0480021492.01 | 0.807917 | 3.999502e-50 | 2.255523e-47 |
| MsG0180003353.01 | MsG0480021492.01 | 0.806674 | 7.334024e-50 | 4.004642e-47 |
| MsG0180003821.01 | MsG0480021492.01 | 0.823513 | 1.329984e-53 | 1.147606e-50 |
| MsG0180003885.01 | MsG0480021492.01 | 0.842376 | 2.685790e-58 | 4.064561e-55 |
| MsG0180003932.01 | MsG0480021492.01 | 0.818956 | 1.495208e-52 | 1.135453e-49 |
| MsG0180004493.01 | MsG0480021492.01 | 0.862176 | 6.097894e-64 | 1.769699e-60 |
| MsG0180004500.01 | MsG0480021492.01 | 0.827229 | 1.756169e-54 | 1.685077e-51 |
| MsG0180004725.01 | MsG0480021492.01 | 0.816751 | 4.704384e-52 | 3.362173e-49 |
| MsG0180005169.01 | MsG0480021492.01 | 0.805659 | 1.199562e-49 | 6.382543e-47 |
| MsG0180005205.01 | MsG0480021492.01 | 0.818659 | 1.746934e-52 | 1.315576e-49 |
| MsG0180005240.01 | MsG0480021492.01 | 0.822359 | 2.471188e-53 | 2.063875e-50 |
| MsG0180005429.01 | MsG0480021492.01 | 0.831304 | 1.800501e-55 | 1.946052e-52 |
| MsG0180005445.01 | MsG0480021492.01 | 0.803243 | 3.825566e-49 | 1.912813e-46 |
| MsG0180005509.01 | MsG0480021492.01 | 0.810607 | 1.059741e-50 | 6.416828e-48 |
| MsG0180005787.01 | MsG0480021492.01 | 0.818166 | 2.258658e-52 | 1.678024e-49 |
| MsG0180006025.01 | MsG0480021492.01 | 0.817548 | 3.114853e-52 | 2.275269e-49 |
| MsG0180006096.01 | MsG0480021492.01 | 0.835867 | 1.306587e-56 | 1.618453e-53 |
| MsG0180006104.01 | MsG0480021492.01 | 0.845817 | 3.204634e-59 | 5.406998e-56 |
| MsG0180006243.01 | MsG0480021492.01 | 0.802076 | 6.660025e-49 | 3.232442e-46 |
| MsG0280010598.01 | MsG0480021492.01 | 0.820796 | 5.674902e-53 | 4.535120e-50 |
| MsG0280010599.01 | MsG0480021492.01 | 0.837316 | 5.584727e-57 | 7.226912e-54 |
| MsG0280010753.01 | MsG0480021492.01 | 0.812593 | 3.922196e-51 | 2.504011e-48 |
| MsG0280010916.01 | MsG0480021492.01 | 0.800089 | 1.697153e-48 | 7.832746e-46 |
| MsG0280011333.01 | MsG0480021492.01 | 0.830165 | 3.424111e-55 | 3.579311e-52 |
| MsG0280011371.01 | MsG0480021492.01 | 0.810696 | 1.013584e-50 | 6.152242e-48 |
| MsG0380011669.01 | MsG0480021492.01 | 0.818310 | 2.095036e-52 | 1.562699e-49 |
| MsG0380011927.01 | MsG0480021492.01 | 0.806617 | 7.541096e-50 | 4.111704e-47 |
| MsG0380012570.01 | MsG0480021492.01 | 0.807438 | 5.054492e-50 | 2.815280e-47 |
| MsG0380013085.01 | MsG0480021492.01 | 0.812133 | 4.941238e-51 | 3.115989e-48 |
| MsG0380013686.01 | MsG0480021492.01 | 0.804705 | 1.899806e-49 | 9.863392e-47 |
| MsG0380014706.01 | MsG0480021492.01 | 0.811095 | 8.309665e-51 | 5.097479e-48 |
| MsG0480018911.01 | MsG0480021492.01 | 0.832832 | 7.548381e-56 | 8.536371e-53 |
| MsG0480019148.01 | MsG0480021492.01 | 0.813399 | 2.609977e-51 | 1.702692e-48 |
| MsG0480019711.01 | MsG0480021492.01 | 0.805806 | 1.117181e-49 | 5.966813e-47 |
| MsG0480020024.01 | MsG0480021492.01 | 0.839376 | 1.643933e-57 | 2.266078e-54 |
| MsG0480021492.01 | MsG0480022514.01 | 0.808427 | 3.114451e-50 | 1.780293e-47 |
| MsG0480021492.01 | MsG0480022672.01 | 0.817545 | 3.119291e-52 | 2.278371e-49 |
| MsG0480021492.01 | MsG0480022891.01 | 0.810060 | 1.390440e-50 | 8.299087e-48 |
| MsG0480021492.01 | MsG0480023055.01 | 0.830774 | 2.430579e-55 | 2.586232e-52 |
| MsG0480021492.01 | MsG0480023377.01 | 0.807723 | 4.396465e-50 | 2.467051e-47 |
| MsG0480021492.01 | MsG0480023384.01 | 0.863832 | 1.878060e-64 | 5.772610e-61 |
| MsG0480021492.01 | MsG0480023387.01 | 0.810076 | 1.379569e-50 | 8.237251e-48 |
| MsG0480021492.01 | MsG0480023660.01 | 0.802798 | 4.727833e-49 | 2.337375e-46 |
| MsG0480021492.01 | MsG0480023867.01 | 0.827748 | 1.318372e-54 | 1.284232e-51 |
| MsG0480021492.01 | MsG0480023978.01 | 0.803810 | 2.918796e-49 | 1.480825e-46 |
| MsG0480021492.01 | MsG0580024084.01 | 0.800233 | 1.586708e-48 | 7.349700e-46 |
| MsG0480021492.01 | MsG0580024790.01 | -0.806431 | 8.251865e-50 | 4.478095e-47 |
| MsG0480021492.01 | MsG0580024930.01 | -0.800622 | 1.321909e-48 | 6.183962e-46 |
| MsG0480021492.01 | MsG0580025332.01 | 0.801568 | 8.467106e-49 | 4.056839e-46 |
| MsG0480021492.01 | MsG0580025439.01 | 0.807198 | 5.681971e-50 | 3.145115e-47 |
| MsG0480021492.01 | MsG0580025458.01 | 0.814925 | 1.201594e-51 | 8.168839e-49 |
| MsG0480021492.01 | MsG0580025460.01 | 0.803081 | 4.132461e-49 | 2.057602e-46 |
| MsG0480021492.01 | MsG0580025661.01 | 0.804735 | 1.873399e-49 | 9.734307e-47 |
| MsG0480021492.01 | MsG0580025816.01 | 0.804718 | 1.888708e-49 | 9.809241e-47 |
| MsG0480021492.01 | MsG0580025971.01 | 0.800858 | 1.183229e-48 | 5.568656e-46 |
| MsG0480021492.01 | MsG0580025986.01 | 0.812312 | 4.515936e-51 | 2.861665e-48 |
| MsG0480021492.01 | MsG0580026137.01 | 0.807707 | 4.432603e-50 | 2.486175e-47 |
| MsG0480021492.01 | MsG0580027891.01 | 0.826924 | 2.076736e-54 | 1.975156e-51 |
| MsG0480021492.01 | MsG0580028175.01 | 0.806526 | 7.880273e-50 | 4.286820e-47 |
| MsG0480021492.01 | MsG0580028582.01 | 0.825679 | 4.109254e-54 | 3.771363e-51 |
| MsG0480021492.01 | MsG0580029550.01 | 0.800563 | 1.359194e-48 | 6.348821e-46 |
| MsG0480021492.01 | MsG0580029736.01 | 0.815774 | 7.780245e-52 | 5.414217e-49 |
| MsG0480021492.01 | MsG0580029879.01 | 0.827540 | 1.478962e-54 | 1.431959e-51 |
| MsG0480021492.01 | MsG0580029919.01 | 0.873483 | 1.419869e-67 | 6.172607e-64 |
| MsG0480021492.01 | MsG0680030515.01 | 0.828923 | 6.863129e-55 | 6.918250e-52 |
| MsG0480021492.01 | MsG0680030555.01 | 0.805307 | 1.422015e-49 | 7.497844e-47 |
| MsG0480021492.01 | MsG0680030616.01 | 0.804232 | 2.384119e-49 | 1.222705e-46 |
| MsG0480021492.01 | MsG0680031000.01 | 0.812476 | 4.158318e-51 | 2.646743e-48 |
| MsG0480021492.01 | MsG0680031145.01 | 0.830152 | 3.449787e-55 | 3.604799e-52 |
| MsG0480021492.01 | MsG0680032832.01 | 0.813806 | 2.124676e-51 | 1.401424e-48 |
| MsG0480021492.01 | MsG0680033465.01 | 0.804155 | 2.474497e-49 | 1.266625e-46 |
| MsG0480021492.01 | MsG0680034235.01 | 0.854123 | 1.517619e-61 | 3.355064e-58 |
| MsG0480021492.01 | MsG0680035216.01 | 0.801500 | 8.744115e-49 | 4.182517e-46 |
| MsG0480021492.01 | MsG0680035580.01 | 0.803337 | 3.657408e-49 | 1.833145e-46 |
| MsG0480021492.01 | MsG0780035937.01 | 0.860944 | 1.450595e-63 | 4.034604e-60 |
| MsG0480021492.01 | MsG0780036117.01 | 0.830622 | 2.647806e-55 | 2.804705e-52 |
| MsG0480021492.01 | MsG0780036602.01 | 0.803824 | 2.898547e-49 | 1.471131e-46 |
| MsG0480021492.01 | MsG0780036659.01 | 0.810352 | 1.202787e-50 | 7.233818e-48 |
| MsG0480021492.01 | MsG0780036880.01 | 0.804875 | 1.750968e-49 | 9.131413e-47 |
| MsG0480021492.01 | MsG0780037123.01 | 0.813878 | 2.047590e-51 | 1.353251e-48 |
| MsG0480021492.01 | MsG0780037330.01 | 0.827857 | 1.240682e-54 | 1.212525e-51 |
| MsG0480021492.01 | MsG0780038907.01 | 0.813795 | 2.135849e-51 | 1.408373e-48 |
| MsG0480021492.01 | MsG0780039155.01 | 0.813007 | 3.181954e-51 | 2.053799e-48 |
| MsG0480021492.01 | MsG0780039369.01 | 0.848172 | 7.258209e-60 | 1.320466e-56 |
| MsG0480021492.01 | MsG0780039443.01 | 0.816811 | 4.561490e-52 | 3.265338e-49 |
| MsG0480021492.01 | MsG0780040591.01 | 0.800644 | 1.308635e-48 | 6.125252e-46 |
| MsG0480021492.01 | MsG0780041127.01 | 0.839783 | 1.289066e-57 | 1.799073e-54 |
| MsG0480021492.01 | MsG0780041258.01 | 0.837495 | 5.027051e-57 | 6.541886e-54 |
| MsG0480021492.01 | MsG0780041387.01 | 0.802117 | 6.531529e-49 | 3.173354e-46 |
| MsG0480021492.01 | MsG0780041435.01 | 0.826878 | 2.129877e-54 | 2.022803e-51 |
| MsG0480021492.01 | MsG0780041440.01 | 0.824145 | 9.456083e-54 | 8.306442e-51 |
| MsG0480021492.01 | MsG0780041482.01 | 0.846498 | 2.091107e-59 | 3.606537e-56 |
| MsG0480021492.01 | MsG0780041729.01 | -0.833730 | 4.510129e-56 | 5.239331e-53 |
| MsG0480021492.01 | MsG0780041734.01 | -0.812837 | 3.467403e-51 | 2.227748e-48 |
| MsG0480021492.01 | MsG0880042033.01 | 0.801015 | 1.099217e-48 | 5.194022e-46 |
| MsG0480021492.01 | MsG0880042324.01 | 0.819406 | 1.181108e-52 | 9.080695e-50 |
| MsG0480021492.01 | MsG0880042700.01 | 0.808316 | 3.287618e-50 | 1.873852e-47 |
| MsG0480021492.01 | MsG0880044005.01 | 0.800178 | 1.627625e-48 | 7.528761e-46 |
| MsG0480021492.01 | MsG0880045329.01 | 0.825086 | 5.676874e-54 | 5.123178e-51 |
| MsG0480021492.01 | MsG0880045387.01 | 0.810046 | 1.400077e-50 | 8.353629e-48 |
| MsG0480021492.01 | MsG0880045684.01 | 0.806306 | 8.772095e-50 | 4.745159e-47 |
| MsG0480021492.01 | MsG0880046517.01 | 0.812258 | 4.641202e-51 | 2.936790e-48 |
| MsG0480021492.01 | MsG0880047152.01 | 0.806408 | 8.346228e-50 | 4.526544e-47 |
| MsG0480021492.01 | MsG0880047696.01 | 0.861371 | 1.075440e-63 | 3.036476e-60 |
| MsG0480021492.01 | MsG0880047703.01 | 0.823929 | 1.062934e-53 | 9.280340e-51 |
| MsG0380015220.01 | MsG0480021492.01 | 0.873066 | 1.961199e-67 | 8.397327e-64 |
| MsG0380016005.01 | MsG0480021492.01 | 0.800626 | 1.319321e-48 | 6.172502e-46 |
| MsG0380016347.01 | MsG0480021492.01 | -0.806045 | 9.951274e-50 | 5.347543e-47 |
| MsG0380016387.01 | MsG0480021492.01 | 0.801771 | 7.695589e-49 | 3.706062e-46 |
| MsG0380016505.01 | MsG0480021492.01 | 0.834980 | 2.189356e-56 | 2.640890e-53 |
| MsG0380016740.01 | MsG0480021492.01 | 0.847540 | 1.084381e-59 | 1.933878e-56 |
| MsG0380017084.01 | MsG0480021492.01 | 0.809094 | 2.242768e-50 | 1.304755e-47 |
| MsG0380017244.01 | MsG0480021492.01 | 0.800621 | 1.322302e-48 | 6.185702e-46 |
| MsG0380017293.01 | MsG0480021492.01 | 0.809030 | 2.313779e-50 | 1.343747e-47 |
| MsG0380017433.01 | MsG0480021492.01 | 0.826065 | 3.327742e-54 | 3.087773e-51 |
| MsG0380017498.01 | MsG0480021492.01 | 0.821775 | 3.374604e-53 | 2.771688e-50 |
| MsG0380018022.01 | MsG0480021492.01 | 0.816279 | 6.003319e-52 | 4.235556e-49 |
| MsG0480018292.01 | MsG0480021492.01 | 0.813659 | 2.287995e-51 | 1.503165e-48 |
| MsG0480018402.01 | MsG0480021492.01 | 0.831662 | 1.469890e-55 | 1.605783e-52 |
| MsG0280006481.01 | MsG0480021492.01 | 0.802905 | 4.493423e-49 | 2.227503e-46 |
| MsG0280006601.01 | MsG0480021492.01 | 0.803321 | 3.685477e-49 | 1.846438e-46 |
| MsG0280006852.01 | MsG0480021492.01 | 0.822494 | 2.299253e-53 | 1.927553e-50 |
| MsG0280007165.01 | MsG0480021492.01 | -0.839522 | 1.506524e-57 | 2.085768e-54 |
| MsG0280007480.01 | MsG0480021492.01 | 0.818049 | 2.400666e-52 | 1.777756e-49 |
| MsG0280007531.01 | MsG0480021492.01 | 0.836251 | 1.044004e-56 | 1.308530e-53 |
| MsG0280007756.01 | MsG0480021492.01 | 0.800749 | 1.245383e-48 | 5.844692e-46 |
| MsG0280007903.01 | MsG0480021492.01 | 0.829052 | 6.386910e-55 | 6.462411e-52 |
| MsG0280008113.01 | MsG0480021492.01 | 0.815558 | 8.691992e-52 | 6.012506e-49 |
| MsG0280008429.01 | MsG0480021492.01 | 0.824668 | 7.126522e-54 | 6.355185e-51 |
| MsG0280008738.01 | MsG0480021492.01 | 0.824511 | 7.758633e-54 | 6.886765e-51 |
| MsG0280008765.01 | MsG0480021492.01 | 0.812943 | 3.287349e-51 | 2.118052e-48 |
| MsG0280008929.01 | MsG0480021492.01 | 0.815300 | 9.921395e-52 | 6.814302e-49 |
| MsG0280008932.01 | MsG0480021492.01 | 0.802703 | 4.947565e-49 | 2.440016e-46 |
| MsG0280009575.01 | MsG0480021492.01 | 0.814692 | 1.353327e-51 | 9.143232e-49 |
| MsG0280010158.01 | MsG0480021492.01 | 0.814525 | 1.473648e-51 | 9.911823e-49 |
| MsG0280010184.01 | MsG0480021492.01 | 0.822665 | 2.098263e-53 | 1.767631e-50 |
| MsG0280010366.01 | MsG0480021492.01 | 0.813540 | 2.430492e-51 | 1.591674e-48 |
| MsG0280010411.01 | MsG0480021492.01 | 0.849400 | 3.313585e-60 | 6.273734e-57 |
| MsG0280010517.01 | MsG0480021492.01 | 0.804863 | 1.761279e-49 | 9.182028e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021492.01.T01 | MTR_4g074450 | 96.429 | 140 | 5 | 0 | 1 | 140 | 1 | 140 | 1.88e-97 | 277 |
| MsG0480021492.01.T01 | MTR_4g108000 | 96.429 | 140 | 5 | 0 | 1 | 140 | 254 | 393 | 6.11e-95 | 280 |
| MsG0480021492.01.T01 | MTR_4g108000 | 96.429 | 140 | 5 | 0 | 1 | 140 | 269 | 408 | 1.22e-94 | 279 |
| MsG0480021492.01.T01 | MTR_4g074450 | 92.254 | 142 | 9 | 1 | 1 | 142 | 1 | 140 | 9.45e-94 | 268 |
| MsG0480021492.01.T01 | MTR_4g108000 | 91.724 | 145 | 8 | 2 | 1 | 141 | 269 | 413 | 1.62e-90 | 270 |
| MsG0480021492.01.T01 | MTR_1g012600 | 44.048 | 84 | 45 | 1 | 49 | 132 | 47 | 128 | 1.32e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021492.01.T01 | AT3G07860 | 63.380 | 142 | 47 | 2 | 3 | 141 | 2 | 141 | 1.58e-51 | 161 |
| MsG0480021492.01.T01 | AT3G07860 | 63.380 | 142 | 47 | 2 | 3 | 141 | 2 | 141 | 1.58e-51 | 161 |
| MsG0480021492.01.T01 | AT3G07860 | 65.414 | 133 | 43 | 1 | 3 | 132 | 2 | 134 | 3.62e-50 | 157 |
| MsG0480021492.01.T01 | AT5G25340 | 40.964 | 83 | 47 | 1 | 50 | 132 | 19 | 99 | 4.71e-17 | 74.7 |
| MsG0480021492.01.T01 | AT4G32270 | 33.333 | 84 | 54 | 1 | 49 | 132 | 37 | 118 | 5.86e-15 | 69.7 |
Find 35 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGATGTGCTTCAAAATT+TGG | 0.144653 | 4:-58569383 | MsG0480021492.01.T01:CDS |
| AGCAAATTTGCGTTTGAATT+TGG | 0.188144 | 4:-58569882 | MsG0480021492.01.T01:five_prime_UTR |
| GTAATTAACTTTCTTCTTGA+TGG | 0.243951 | 4:+58569612 | None:intergenic |
| ATCTTCAAGCGTAGGATTCT+TGG | 0.255078 | 4:+58569756 | None:intergenic |
| AACTCTCATTGGACTTGAAT+TGG | 0.259182 | 4:-58569728 | MsG0480021492.01.T01:CDS |
| TTGATTGCAGGAGGAGTGTT+TGG | 0.266654 | 4:-58569450 | MsG0480021492.01.T01:intron |
| TTACATGGAACAATCTAGTA+TGG | 0.294231 | 4:-58569593 | MsG0480021492.01.T01:CDS |
| GAAGGTGTTGAAAGCATTAT+TGG | 0.319812 | 4:-58569803 | MsG0480021492.01.T01:CDS |
| TGGGGCATCGTCACATTTCT+TGG | 0.329427 | 4:-58569573 | MsG0480021492.01.T01:intron |
| TTTCTGAAATAAAGTGAGTT+TGG | 0.336025 | 4:-58569911 | MsG0480021492.01.T01:five_prime_UTR |
| TATCTATTCTATGTCATTGC+TGG | 0.345615 | 4:-58569328 | MsG0480021492.01.T01:CDS |
| TATGAATACGGCAACGCTTA+AGG | 0.362851 | 4:-58569647 | MsG0480021492.01.T01:CDS |
| TGATGTGATTCTTATGAATA+CGG | 0.363774 | 4:-58569659 | MsG0480021492.01.T01:CDS |
| GAAGCACATCATCATCGTTA+AGG | 0.405288 | 4:+58569392 | None:intergenic |
| ACTCTCATTGGACTTGAATT+GGG | 0.418691 | 4:-58569727 | MsG0480021492.01.T01:CDS |
| TTGGGTACATCTGCAAGTAT+TGG | 0.422385 | 4:+58569775 | None:intergenic |
| GATGATGTGCTTCAAAATTT+GGG | 0.438672 | 4:-58569382 | MsG0480021492.01.T01:CDS |
| TGATTGCAGGAGGAGTGTTT+GGG | 0.443491 | 4:-58569449 | MsG0480021492.01.T01:intron |
| TCTTCAAGCGTAGGATTCTT+GGG | 0.457805 | 4:+58569757 | None:intergenic |
| TTGGTTATTGTGCGATGAGA+TGG | 0.459607 | 4:-58569863 | MsG0480021492.01.T01:exon |
| GGGCGTTCGAAATAATTCTC+AGG | 0.483534 | 4:-58569362 | MsG0480021492.01.T01:CDS |
| CTGAAATAAAGTGAGTTTGG+TGG | 0.485053 | 4:-58569908 | MsG0480021492.01.T01:five_prime_UTR |
| ATACAAGAGCGGTTTGAAGA+AGG | 0.490103 | 4:-58569827 | MsG0480021492.01.T01:CDS |
| TGGTTATTGTGCGATGAGAT+GGG | 0.507966 | 4:-58569862 | MsG0480021492.01.T01:exon |
| GAAGATGTGGAAACTCTCAT+TGG | 0.517568 | 4:-58569739 | MsG0480021492.01.T01:CDS |
| GAATCCTACGCTTGAAGATG+TGG | 0.526900 | 4:-58569752 | MsG0480021492.01.T01:CDS |
| CAAGAAGAAAGTTAATTACA+TGG | 0.538196 | 4:-58569608 | MsG0480021492.01.T01:CDS |
| GTTTCCACATCTTCAAGCGT+AGG | 0.543211 | 4:+58569748 | None:intergenic |
| TACATGGAACAATCTAGTAT+GGG | 0.546371 | 4:-58569592 | MsG0480021492.01.T01:CDS |
| GGTGTTGAAAGCATTATTGG+AGG | 0.583098 | 4:-58569800 | MsG0480021492.01.T01:CDS |
| TTGTGCGATGAGATGGGAGA+AGG | 0.646862 | 4:-58569856 | MsG0480021492.01.T01:exon |
| ACATGGAACAATCTAGTATG+GGG | 0.649258 | 4:-58569591 | MsG0480021492.01.T01:CDS |
| GAGCGGTTTGAAGAAGGCGA+AGG | 0.652966 | 4:-58569821 | MsG0480021492.01.T01:CDS |
| CGATGAGATGGGAGAAGGTG+CGG | 0.664098 | 4:-58569851 | MsG0480021492.01.T01:exon |
| GAAGGTGCGGAATACAAGAG+CGG | 0.727904 | 4:-58569838 | MsG0480021492.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGCAAACATTGAAAAATGAT+TGG | - | Chr4:58569738-58569757 | MsG0480021492.01.T01:CDS | 25.0% |
| ! | CAAGAAGAAAGTTAATTACA+TGG | - | Chr4:58569637-58569656 | MsG0480021492.01.T01:CDS | 25.0% |
| ! | GTAATTAACTTTCTTCTTGA+TGG | + | Chr4:58569636-58569655 | None:intergenic | 25.0% |
| ! | TGATGTGATTCTTATGAATA+CGG | - | Chr4:58569586-58569605 | MsG0480021492.01.T01:CDS | 25.0% |
| !! | TTTCAATGTTTGCTAATCAA+TGG | + | Chr4:58569732-58569751 | None:intergenic | 25.0% |
| !!! | TTTCTGAAATAAAGTGAGTT+TGG | - | Chr4:58569334-58569353 | MsG0480021492.01.T01:CDS | 25.0% |
| AGCAAATTTGCGTTTGAATT+TGG | - | Chr4:58569363-58569382 | MsG0480021492.01.T01:CDS | 30.0% | |
| GATGATGTGCTTCAAAATTT+GGG | - | Chr4:58569863-58569882 | MsG0480021492.01.T01:exon | 30.0% | |
| TACATGGAACAATCTAGTAT+GGG | - | Chr4:58569653-58569672 | MsG0480021492.01.T01:CDS | 30.0% | |
| TATCTATTCTATGTCATTGC+TGG | - | Chr4:58569917-58569936 | MsG0480021492.01.T01:five_prime_UTR | 30.0% | |
| TTACATGGAACAATCTAGTA+TGG | - | Chr4:58569652-58569671 | MsG0480021492.01.T01:CDS | 30.0% | |
| ! | TGATGATGTGCTTCAAAATT+TGG | - | Chr4:58569862-58569881 | MsG0480021492.01.T01:exon | 30.0% |
| !!! | ATCTGATTGATTTTGATTGC+AGG | - | Chr4:58569783-58569802 | MsG0480021492.01.T01:CDS | 30.0% |
| !!! | GCGAATTTCTGTTTTGAAAT+TGG | - | Chr4:58569550-58569569 | MsG0480021492.01.T01:intron | 30.0% |
| AACTCTCATTGGACTTGAAT+TGG | - | Chr4:58569517-58569536 | MsG0480021492.01.T01:intron | 35.0% | |
| ACATGGAACAATCTAGTATG+GGG | - | Chr4:58569654-58569673 | MsG0480021492.01.T01:CDS | 35.0% | |
| ACTCTCATTGGACTTGAATT+GGG | - | Chr4:58569518-58569537 | MsG0480021492.01.T01:intron | 35.0% | |
| CTGAAATAAAGTGAGTTTGG+TGG | - | Chr4:58569337-58569356 | MsG0480021492.01.T01:CDS | 35.0% | |
| !! | GAAGGTGTTGAAAGCATTAT+TGG | - | Chr4:58569442-58569461 | MsG0480021492.01.T01:CDS | 35.0% |
| !!! | TGATTGATTTTGATTGCAGG+AGG | - | Chr4:58569786-58569805 | MsG0480021492.01.T01:CDS | 35.0% |
| ATACAAGAGCGGTTTGAAGA+AGG | - | Chr4:58569418-58569437 | MsG0480021492.01.T01:CDS | 40.0% | |
| ATCTTCAAGCGTAGGATTCT+TGG | + | Chr4:58569492-58569511 | None:intergenic | 40.0% | |
| CATTGCTGGAATTGCGAAAT+AGG | - | Chr4:58569931-58569950 | MsG0480021492.01.T01:five_prime_UTR | 40.0% | |
| GAAGATGTGGAAACTCTCAT+TGG | - | Chr4:58569506-58569525 | MsG0480021492.01.T01:intron | 40.0% | |
| GAAGCACATCATCATCGTTA+AGG | + | Chr4:58569856-58569875 | None:intergenic | 40.0% | |
| TATGAATACGGCAACGCTTA+AGG | - | Chr4:58569598-58569617 | MsG0480021492.01.T01:CDS | 40.0% | |
| TCTTCAAGCGTAGGATTCTT+GGG | + | Chr4:58569491-58569510 | None:intergenic | 40.0% | |
| TGGTTATTGTGCGATGAGAT+GGG | - | Chr4:58569383-58569402 | MsG0480021492.01.T01:CDS | 40.0% | |
| TTGGGTACATCTGCAAGTAT+TGG | + | Chr4:58569473-58569492 | None:intergenic | 40.0% | |
| TTGGTTATTGTGCGATGAGA+TGG | - | Chr4:58569382-58569401 | MsG0480021492.01.T01:CDS | 40.0% | |
| !! | GGTGTTGAAAGCATTATTGG+AGG | - | Chr4:58569445-58569464 | MsG0480021492.01.T01:intron | 40.0% |
| GAATCCTACGCTTGAAGATG+TGG | - | Chr4:58569493-58569512 | MsG0480021492.01.T01:intron | 45.0% | |
| GGGCGTTCGAAATAATTCTC+AGG | - | Chr4:58569883-58569902 | MsG0480021492.01.T01:five_prime_UTR | 45.0% | |
| GTTTCCACATCTTCAAGCGT+AGG | + | Chr4:58569500-58569519 | None:intergenic | 45.0% | |
| !! | TGATTGCAGGAGGAGTGTTT+GGG | - | Chr4:58569796-58569815 | MsG0480021492.01.T01:CDS | 45.0% |
| !! | TTGATTGCAGGAGGAGTGTT+TGG | - | Chr4:58569795-58569814 | MsG0480021492.01.T01:CDS | 45.0% |
| TTGTGCGATGAGATGGGAGA+AGG | - | Chr4:58569389-58569408 | MsG0480021492.01.T01:CDS | 50.0% | |
| ! | GAAGGTGCGGAATACAAGAG+CGG | - | Chr4:58569407-58569426 | MsG0480021492.01.T01:CDS | 50.0% |
| !! | TGGGGCATCGTCACATTTCT+TGG | - | Chr4:58569672-58569691 | MsG0480021492.01.T01:CDS | 50.0% |
| CGATGAGATGGGAGAAGGTG+CGG | - | Chr4:58569394-58569413 | MsG0480021492.01.T01:CDS | 55.0% | |
| GAGCGGTTTGAAGAAGGCGA+AGG | - | Chr4:58569424-58569443 | MsG0480021492.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 58569315 | 58569952 | 58569315 | ID=MsG0480021492.01;Name=MsG0480021492.01 |
| Chr4 | mRNA | 58569315 | 58569952 | 58569315 | ID=MsG0480021492.01.T01;Parent=MsG0480021492.01;Name=MsG0480021492.01.T01;_AED=0.38;_eAED=0.39;_QI=86|1|0.5|1|1|1|2|0|146 |
| Chr4 | exon | 58569315 | 58569462 | 58569315 | ID=MsG0480021492.01.T01:exon:17345;Parent=MsG0480021492.01.T01 |
| Chr4 | exon | 58569574 | 58569952 | 58569574 | ID=MsG0480021492.01.T01:exon:17344;Parent=MsG0480021492.01.T01 |
| Chr4 | five_prime_UTR | 58569867 | 58569952 | 58569867 | ID=MsG0480021492.01.T01:five_prime_utr;Parent=MsG0480021492.01.T01 |
| Chr4 | CDS | 58569574 | 58569866 | 58569574 | ID=MsG0480021492.01.T01:cds;Parent=MsG0480021492.01.T01 |
| Chr4 | CDS | 58569315 | 58569462 | 58569315 | ID=MsG0480021492.01.T01:cds;Parent=MsG0480021492.01.T01 |
| Gene Sequence |
| Protein sequence |
