Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001590 | sp|Q65XS5|BC10_ORYSJ | 76.623 | 308 | 69 | 2 | 56 | 360 | 85 | 392 | 1.09e-175 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001590 | Msa0017510 | 0.818765 | 1.652315e-52 | -8.615850e-47 |
| Msa0001590 | Msa0032370 | 0.801591 | 8.374888e-49 | -8.615850e-47 |
| Msa0001590 | Msa0040450 | 0.822152 | 2.760652e-53 | -8.615850e-47 |
| Msa0001590 | Msa0046100 | 0.809097 | 2.239587e-50 | -8.615850e-47 |
| Msa0001590 | Msa0093400 | 0.815817 | 7.611386e-52 | -8.615850e-47 |
| Msa0001590 | Msa0110970 | 0.822160 | 2.748705e-53 | -8.615850e-47 |
| Msa0001590 | Msa0124340 | 0.834663 | 2.631592e-56 | -8.615850e-47 |
| Msa0001590 | Msa0157290 | 0.819101 | 1.385955e-52 | -8.615850e-47 |
| Msa0001590 | Msa0196130 | -0.801007 | 1.103097e-48 | -8.615850e-47 |
| Msa0001590 | Msa0212990 | 0.811773 | 5.920327e-51 | -8.615850e-47 |
| Msa0001590 | Msa0225320 | 0.819778 | 9.713456e-53 | -8.615850e-47 |
| Msa0001590 | Msa0238890 | 0.807675 | 4.502012e-50 | -8.615850e-47 |
| Msa0001590 | Msa0283450 | 0.814443 | 1.536710e-51 | -8.615850e-47 |
| Msa0001590 | Msa0283520 | 0.816541 | 5.244509e-52 | -8.615850e-47 |
| Msa0001590 | Msa0297740 | 0.804818 | 1.799513e-49 | -8.615850e-47 |
| Msa0001590 | Msa0330340 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0001590 | Msa0332000 | 0.819414 | 1.176036e-52 | -8.615850e-47 |
| Msa0001590 | Msa0337330 | 0.816359 | 5.760223e-52 | -8.615850e-47 |
| Msa0001590 | Msa0341910 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0001590 | Msa0388960 | 0.832254 | 1.049738e-55 | -8.615850e-47 |
| Msa0001590 | Msa0410500 | 0.822493 | 2.299623e-53 | -8.615850e-47 |
| Msa0001590 | Msa0410650 | 0.816060 | 6.717670e-52 | -8.615850e-47 |
| Msa0001590 | Msa0417270 | 0.807768 | 4.301887e-50 | -8.615850e-47 |
| Msa0001590 | Msa0417880 | 0.802392 | 5.732596e-49 | -8.615850e-47 |
| Msa0001590 | Msa0469160 | 0.809363 | 1.963419e-50 | -8.615850e-47 |
| Msa0001590 | Msa0480000 | 0.803480 | 3.416170e-49 | -8.615850e-47 |
| Msa0001590 | Msa0495330 | 0.801307 | 9.577803e-49 | -8.615850e-47 |
| Msa0001590 | Msa0500360 | 0.807003 | 6.248759e-50 | -8.615850e-47 |
| Msa0001590 | Msa0507680 | 0.825030 | 5.853682e-54 | -8.615850e-47 |
| Msa0001590 | Msa0562440 | 0.804553 | 2.044544e-49 | -8.615850e-47 |
| Msa0001590 | Msa0584860 | 0.813112 | 3.018698e-51 | -8.615850e-47 |
| Msa0001590 | Msa0585230 | 0.801046 | 1.083012e-48 | -8.615850e-47 |
| Msa0001590 | Msa0633700 | 0.812435 | 4.245915e-51 | -8.615850e-47 |
| Msa0001590 | Msa0657750 | 0.806555 | 7.771508e-50 | -8.615850e-47 |
| Msa0001590 | Msa0658570 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0001590 | Msa0688770 | 0.802777 | 4.776344e-49 | -8.615850e-47 |
| Msa0001590 | Msa0693380 | 0.800290 | 1.545090e-48 | -8.615850e-47 |
| Msa0001590 | Msa0705870 | 0.959087 | 4.672276e-117 | -8.615850e-47 |
| Msa0001590 | Msa0824680 | 0.802063 | 6.702227e-49 | -8.615850e-47 |
| Msa0001590 | Msa0850960 | 0.807142 | 5.840085e-50 | -8.615850e-47 |
| Msa0001590 | Msa0867890 | 0.800357 | 1.496700e-48 | -8.615850e-47 |
| Msa0001590 | Msa0880140 | 0.815533 | 8.806122e-52 | -8.615850e-47 |
| Msa0001590 | Msa0896750 | 0.814338 | 1.621354e-51 | -8.615850e-47 |
| Msa0001590 | Msa1023400 | 0.808117 | 3.625776e-50 | -8.615850e-47 |
| Msa0001590 | Msa1043920 | 0.805714 | 1.168428e-49 | -8.615850e-47 |
| Msa0001590 | Msa1082500 | 0.809771 | 1.604814e-50 | -8.615850e-47 |
| Msa0001590 | Msa1085200 | 0.810272 | 1.251989e-50 | -8.615850e-47 |
| Msa0001590 | Msa1151910 | 0.818380 | 2.020342e-52 | -8.615850e-47 |
| Msa0001590 | Msa1179940 | 0.805976 | 1.029326e-49 | -8.615850e-47 |
| Msa0001590 | Msa1179970 | 0.809507 | 1.828596e-50 | -8.615850e-47 |
| Msa0001590 | Msa1211150 | -0.819807 | 9.566529e-53 | -8.615850e-47 |
| Msa0001590 | Msa1222970 | 0.800114 | 1.677430e-48 | -8.615850e-47 |
| Msa0001590 | Msa1236100 | 0.814969 | 1.174878e-51 | -8.615850e-47 |
| Msa0001590 | Msa1270610 | 0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0001590 | Msa1271300 | 0.800171 | 1.633378e-48 | -8.615850e-47 |
| Msa0001590 | Msa1283860 | 0.835179 | 1.950689e-56 | -8.615850e-47 |
| Msa0001590 | Msa1308380 | 0.823506 | 1.335030e-53 | -8.615850e-47 |
| Msa0001590 | Msa1313150 | 0.833866 | 4.169511e-56 | -8.615850e-47 |
| Msa0001590 | Msa1343070 | 0.824806 | 6.610520e-54 | -8.615850e-47 |
| Msa0001590 | Msa1349270 | 0.803570 | 3.273395e-49 | -8.615850e-47 |
| Msa0001590 | Msa1355800 | 0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa0001590 | Msa1364470 | -0.813938 | 1.986636e-51 | -8.615850e-47 |
| Msa0001590 | Msa1371430 | 0.824499 | 7.810295e-54 | -8.615850e-47 |
| Msa0001590 | Msa1373330 | 0.812938 | 3.295555e-51 | -8.615850e-47 |
| Msa0001590 | Msa1409870 | 0.811306 | 7.479757e-51 | -8.615850e-47 |
| Msa0001590 | Msa1415640 | 0.811179 | 7.966438e-51 | -8.615850e-47 |
| Msa0001590 | Msa1423880 | 0.839308 | 1.712167e-57 | -8.615850e-47 |
| Msa0001590 | Msa1459180 | 0.808194 | 3.490992e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001590 | MtrunA17_Chr8g0384601 | 100.000 | 363 | 0 | 0 | 1 | 363 | 1 | 363 | 0.0 | 758 |
| Msa0001590 | MtrunA17_Chr2g0289021 | 51.344 | 372 | 161 | 5 | 1 | 362 | 6 | 367 | 1.65e-134 | 389 |
| Msa0001590 | MtrunA17_Chr2g0298501 | 39.423 | 312 | 151 | 10 | 54 | 356 | 104 | 386 | 2.59e-62 | 204 |
| Msa0001590 | MtrunA17_Chr4g0071911 | 38.141 | 312 | 156 | 10 | 53 | 356 | 105 | 387 | 1.75e-60 | 199 |
| Msa0001590 | MtrunA17_Chr2g0298511 | 38.782 | 312 | 154 | 7 | 53 | 356 | 95 | 377 | 2.77e-59 | 196 |
| Msa0001590 | MtrunA17_Chr1g0151841 | 38.235 | 306 | 143 | 8 | 55 | 356 | 106 | 369 | 1.71e-57 | 191 |
| Msa0001590 | MtrunA17_Chr5g0423131 | 36.842 | 304 | 144 | 9 | 55 | 354 | 122 | 381 | 1.46e-53 | 181 |
| Msa0001590 | MtrunA17_Chr1g0148241 | 34.505 | 313 | 169 | 8 | 51 | 355 | 107 | 391 | 5.15e-52 | 177 |
| Msa0001590 | MtrunA17_Chr1g0209531 | 36.039 | 308 | 148 | 9 | 55 | 357 | 124 | 387 | 1.69e-51 | 176 |
| Msa0001590 | MtrunA17_Chr2g0276861 | 37.459 | 307 | 146 | 10 | 55 | 357 | 168 | 432 | 1.38e-50 | 174 |
| Msa0001590 | MtrunA17_Chr6g0484141 | 37.540 | 309 | 141 | 11 | 53 | 354 | 147 | 410 | 1.49e-50 | 174 |
| Msa0001590 | MtrunA17_Chr3g0138871 | 34.615 | 312 | 168 | 8 | 51 | 354 | 88 | 371 | 2.37e-50 | 172 |
| Msa0001590 | MtrunA17_Chr8g0341461 | 35.987 | 314 | 153 | 9 | 53 | 360 | 141 | 412 | 1.60e-49 | 171 |
| Msa0001590 | MtrunA17_Chr5g0394961 | 35.806 | 310 | 151 | 10 | 53 | 357 | 149 | 415 | 1.61e-47 | 166 |
| Msa0001590 | MtrunA17_Chr3g0136091 | 33.866 | 313 | 144 | 11 | 40 | 349 | 127 | 379 | 3.85e-44 | 156 |
| Msa0001590 | MtrunA17_Chr4g0073871 | 36.885 | 244 | 108 | 8 | 116 | 354 | 10 | 212 | 1.63e-37 | 134 |
| Msa0001590 | MtrunA17_Chr5g0394981 | 36.179 | 246 | 113 | 8 | 116 | 357 | 3 | 208 | 2.33e-37 | 134 |
| Msa0001590 | MtrunA17_Chr1g0170231 | 29.787 | 329 | 154 | 11 | 54 | 357 | 62 | 338 | 1.65e-30 | 119 |
| Msa0001590 | MtrunA17_Chr3g0137661 | 28.758 | 306 | 177 | 9 | 56 | 354 | 95 | 366 | 1.21e-27 | 112 |
| Msa0001590 | MtrunA17_Chr2g0322161 | 29.664 | 327 | 156 | 10 | 47 | 345 | 69 | 349 | 7.50e-25 | 103 |
| Msa0001590 | MtrunA17_Chr1g0170151 | 27.410 | 332 | 172 | 12 | 46 | 357 | 55 | 337 | 4.15e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001590 | AT5G14550.1 | 69.542 | 371 | 98 | 4 | 1 | 359 | 1 | 368 | 0.0 | 541 |
| Msa0001590 | AT5G14550.3 | 70.219 | 366 | 94 | 4 | 1 | 354 | 1 | 363 | 0.0 | 538 |
| Msa0001590 | AT5G14550.4 | 65.574 | 366 | 84 | 5 | 1 | 354 | 1 | 336 | 1.27e-172 | 484 |
| Msa0001590 | AT5G14550.2 | 65.538 | 325 | 84 | 5 | 1 | 313 | 1 | 309 | 3.19e-154 | 437 |
| Msa0001590 | AT1G11940.1 | 50.000 | 368 | 170 | 5 | 2 | 361 | 16 | 377 | 2.08e-125 | 366 |
| Msa0001590 | AT1G62305.1 | 56.026 | 307 | 130 | 5 | 54 | 359 | 67 | 369 | 1.82e-120 | 353 |
| Msa0001590 | AT1G62305.2 | 51.140 | 307 | 121 | 6 | 54 | 359 | 67 | 345 | 9.61e-102 | 305 |
| Msa0001590 | AT1G62305.3 | 59.716 | 211 | 81 | 4 | 54 | 263 | 67 | 274 | 1.27e-81 | 252 |
| Msa0001590 | AT1G11940.2 | 52.101 | 238 | 103 | 3 | 2 | 231 | 16 | 250 | 1.02e-78 | 243 |
| Msa0001590 | AT4G31350.4 | 36.741 | 313 | 161 | 7 | 50 | 354 | 83 | 366 | 7.62e-59 | 195 |
| Msa0001590 | AT4G31350.1 | 36.741 | 313 | 161 | 7 | 50 | 354 | 83 | 366 | 7.62e-59 | 195 |
| Msa0001590 | AT4G31350.2 | 36.741 | 313 | 161 | 7 | 50 | 354 | 83 | 366 | 7.62e-59 | 195 |
| Msa0001590 | AT5G57270.3 | 38.095 | 315 | 152 | 10 | 54 | 356 | 96 | 379 | 1.20e-57 | 192 |
| Msa0001590 | AT5G57270.1 | 38.095 | 315 | 152 | 10 | 54 | 356 | 96 | 379 | 1.20e-57 | 192 |
| Msa0001590 | AT5G57270.4 | 38.095 | 315 | 152 | 10 | 54 | 356 | 96 | 379 | 1.20e-57 | 192 |
| Msa0001590 | AT5G57270.5 | 38.095 | 315 | 152 | 10 | 54 | 356 | 96 | 379 | 1.20e-57 | 192 |
| Msa0001590 | AT5G57270.2 | 38.095 | 315 | 152 | 10 | 54 | 356 | 96 | 379 | 1.20e-57 | 192 |
| Msa0001590 | AT1G10280.1 | 37.380 | 313 | 146 | 10 | 55 | 360 | 142 | 411 | 6.96e-56 | 188 |
| Msa0001590 | AT1G73810.1 | 38.782 | 312 | 143 | 11 | 56 | 360 | 147 | 417 | 5.43e-55 | 186 |
| Msa0001590 | AT4G31350.3 | 35.783 | 313 | 159 | 7 | 50 | 354 | 83 | 361 | 1.07e-54 | 184 |
| Msa0001590 | AT2G19160.2 | 36.246 | 309 | 161 | 8 | 56 | 356 | 106 | 386 | 2.29e-53 | 181 |
| Msa0001590 | AT2G19160.1 | 36.246 | 309 | 161 | 8 | 56 | 356 | 106 | 386 | 2.29e-53 | 181 |
| Msa0001590 | AT1G68390.1 | 34.202 | 307 | 157 | 7 | 55 | 357 | 137 | 402 | 3.57e-53 | 181 |
| Msa0001590 | AT4G25870.1 | 36.102 | 313 | 157 | 11 | 56 | 356 | 99 | 380 | 2.78e-51 | 176 |
| Msa0001590 | AT5G16170.1 | 37.299 | 311 | 151 | 9 | 56 | 360 | 136 | 408 | 4.04e-51 | 176 |
| Msa0001590 | AT5G11730.1 | 35.987 | 314 | 148 | 11 | 55 | 360 | 117 | 385 | 1.18e-50 | 174 |
| Msa0001590 | AT1G51770.1 | 35.831 | 307 | 150 | 8 | 55 | 357 | 123 | 386 | 3.48e-50 | 173 |
| Msa0001590 | AT4G30060.2 | 33.974 | 312 | 170 | 8 | 53 | 356 | 106 | 389 | 3.25e-49 | 171 |
| Msa0001590 | AT4G30060.1 | 33.974 | 312 | 170 | 8 | 53 | 356 | 106 | 389 | 3.25e-49 | 171 |
| Msa0001590 | AT1G10880.1 | 34.354 | 294 | 148 | 7 | 55 | 345 | 117 | 368 | 8.83e-48 | 166 |
| Msa0001590 | AT1G68380.1 | 35.505 | 307 | 151 | 9 | 55 | 357 | 123 | 386 | 1.55e-45 | 160 |
| Msa0001590 | AT3G21310.1 | 35.783 | 313 | 150 | 11 | 55 | 360 | 114 | 382 | 1.66e-45 | 160 |
| Msa0001590 | AT3G21310.3 | 35.783 | 313 | 150 | 11 | 55 | 360 | 114 | 382 | 1.66e-45 | 160 |
| Msa0001590 | AT5G25970.1 | 34.202 | 307 | 155 | 9 | 55 | 357 | 118 | 381 | 1.83e-44 | 157 |
| Msa0001590 | AT5G25970.2 | 34.202 | 307 | 155 | 9 | 55 | 357 | 118 | 381 | 1.83e-44 | 157 |
| Msa0001590 | AT5G25970.3 | 34.202 | 307 | 155 | 9 | 55 | 357 | 118 | 381 | 1.83e-44 | 157 |
| Msa0001590 | AT1G51770.2 | 31.683 | 303 | 141 | 8 | 55 | 357 | 123 | 359 | 7.42e-36 | 134 |
| Msa0001590 | AT5G25330.1 | 30.449 | 312 | 170 | 8 | 56 | 357 | 81 | 355 | 5.14e-34 | 129 |
| Msa0001590 | AT4G32290.1 | 29.808 | 312 | 177 | 9 | 56 | 357 | 93 | 372 | 1.01e-28 | 115 |
| Msa0001590 | AT3G52060.1 | 28.526 | 312 | 168 | 10 | 55 | 357 | 74 | 339 | 1.60e-28 | 114 |
| Msa0001590 | AT5G22070.1 | 29.429 | 350 | 167 | 14 | 40 | 357 | 54 | 355 | 3.37e-26 | 107 |
| Msa0001590 | AT3G21310.2 | 41.135 | 141 | 75 | 4 | 55 | 191 | 114 | 250 | 6.87e-24 | 99.8 |
Find 89 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTTGGACAGTCTGTTT+TGG | 0.165391 | 1_1:+3258023 | Msa0001590:intron |
| AAAAGCCGCTACCCGAATTT+TGG | 0.189280 | 1_1:+3256314 | Msa0001590:CDS |
| GATGCGGTATACTCATGTTT+TGG | 0.236011 | 1_1:+3252663 | Msa0001590:CDS |
| TAAATTCTTTATTAGGCTAT+TGG | 0.250453 | 1_1:+3252398 | Msa0001590:five_prime_UTR |
| TGGTTTGGGATGCATTCTTT+AGG | 0.289253 | 1_1:+3252779 | Msa0001590:CDS |
| CAGTTATTCCAGTTTATAAC+TGG | 0.289938 | 1_1:+3255803 | Msa0001590:CDS |
| GAATATCAGAAAAGTGTTAA+AGG | 0.295171 | 1_1:-3252015 | None:intergenic |
| TTCTTGCTAAATTCTTTATT+AGG | 0.305249 | 1_1:+3252391 | Msa0001590:five_prime_UTR |
| GCTTCCTTTGGAATTGGTTT+GGG | 0.305701 | 1_1:+3252765 | Msa0001590:CDS |
| GGTTTGGGATGCATTCTTTA+GGG | 0.307058 | 1_1:+3252780 | Msa0001590:CDS |
| TTGGTGGTGGTGCTTTGTTT+TGG | 0.307690 | 1_1:+3252622 | Msa0001590:CDS |
| GATGCTTATTAAATTTATAA+AGG | 0.310256 | 1_1:+3256994 | Msa0001590:CDS |
| AAATTCTTTATTAGGCTATT+GGG | 0.312154 | 1_1:+3252399 | Msa0001590:five_prime_UTR |
| TTGAAATGAGTGTTAAAGTT+TGG | 0.313532 | 1_1:+3252466 | Msa0001590:five_prime_UTR |
| GACTTGATCCCTCCAAAATT+CGG | 0.318399 | 1_1:-3256326 | None:intergenic |
| GGCTTCCTTTGGAATTGGTT+TGG | 0.319839 | 1_1:+3252764 | Msa0001590:CDS |
| TAGTAAACTTTCTTGCAAAA+AGG | 0.331608 | 1_1:-3257597 | None:intergenic |
| TACAACCTTGGCATGCTTCC+TGG | 0.336465 | 1_1:-3255974 | None:intergenic |
| AGAAAGTGGTTCAGCAGAAA+TGG | 0.341229 | 1_1:+3252575 | Msa0001590:CDS |
| CAGTTATAAACTGGAATAAC+TGG | 0.344271 | 1_1:-3255802 | None:intergenic |
| AATATCAGAAAAGTGTTAAA+GGG | 0.354961 | 1_1:-3252014 | None:intergenic |
| ATGAAGAGAAAAGCAATCTT+AGG | 0.355547 | 1_1:-3252730 | None:intergenic |
| TGCAAGGAATAGGCTTCCTT+TGG | 0.360242 | 1_1:+3252753 | Msa0001590:CDS |
| TCCACGGCGCTCACGATCTC+TGG | 0.364508 | 1_1:-3256933 | None:intergenic |
| GAATTAACTTGGGCTATGTT+TGG | 0.368470 | 1_1:+3258365 | Msa0001590:three_prime_UTR |
| GAATAGGCTTCCTTTGGAAT+TGG | 0.368624 | 1_1:+3252759 | Msa0001590:CDS |
| ATTAGGCTATTGGGTTGGTA+TGG | 0.398259 | 1_1:+3252408 | Msa0001590:five_prime_UTR |
| TTCTCTTCATTGCAAGGAAT+AGG | 0.401929 | 1_1:+3252743 | Msa0001590:CDS |
| TGCAGTGGGCTGTGCTGACC+AGG | 0.406399 | 1_1:+3255956 | Msa0001590:intron |
| GTTTGAACATAGTGTTCATC+TGG | 0.409473 | 1_1:-3256612 | None:intergenic |
| AAAACAAAGCGGTCATTTAG+AGG | 0.415697 | 1_1:-3254857 | None:intergenic |
| CCAGTTTATAACTGGAGAAA+AGG | 0.418484 | 1_1:+3255811 | Msa0001590:CDS |
| TGCTTGTACACCATTCTCTT+CGG | 0.432521 | 1_1:-3257552 | None:intergenic |
| CTATCCACAAAGCAATATAA+AGG | 0.433889 | 1_1:-3252355 | None:intergenic |
| TGGTATACAGTTGTGGATCT+TGG | 0.438795 | 1_1:-3256592 | None:intergenic |
| GTGTAGCTGAAGTTGTATAA+AGG | 0.444599 | 1_1:-3255395 | None:intergenic |
| ACTTGATCCCTCCAAAATTC+GGG | 0.445648 | 1_1:-3256325 | None:intergenic |
| TTACTAGGACTGCTGCTTTG+AGG | 0.451390 | 1_1:+3257614 | Msa0001590:CDS |
| ACACTATGTTCAAACATTGC+TGG | 0.459415 | 1_1:+3256620 | Msa0001590:CDS |
| TTGGGTTGGTATGGATCTGT+TGG | 0.468610 | 1_1:+3252417 | Msa0001590:five_prime_UTR |
| TGCTTTGAGGCTTCTTAACA+TGG | 0.485012 | 1_1:+3257627 | Msa0001590:CDS |
| ACTCACAACATGAATTAACT+TGG | 0.486200 | 1_1:+3258354 | Msa0001590:three_prime_UTR |
| TTTATAAATTTAATAAGCAT+CGG | 0.496105 | 1_1:-3256992 | None:intergenic |
| TAACTGGAGAAAAGGATCTC+AGG | 0.503043 | 1_1:+3255819 | Msa0001590:CDS |
| TGGATCTTGGACGTGTCAGC+AGG | 0.503820 | 1_1:-3256579 | None:intergenic |
| GCGCTCACGATCTCTGGAGT+TGG | 0.504969 | 1_1:-3256927 | None:intergenic |
| TACAGCTTCGCTGACACAAA+AGG | 0.505137 | 1_1:+3255754 | Msa0001590:intron |
| ATCGTCCTCCACTACAACCT+TGG | 0.509580 | 1_1:-3255986 | None:intergenic |
| CACCTATCGACAAAACTAGT+TGG | 0.511751 | 1_1:-3255440 | None:intergenic |
| TCCCTCCAAAATTCGGGTAG+CGG | 0.515418 | 1_1:-3256319 | None:intergenic |
| TCTGAGAACTTATAAGTCAC+TGG | 0.518003 | 1_1:-3256962 | None:intergenic |
| GTAGAATATGAAGAAGAAAG+TGG | 0.518812 | 1_1:+3252561 | Msa0001590:exon |
| TCAAGTTAATGATAGCATAC+AGG | 0.530790 | 1_1:+3253924 | Msa0001590:CDS |
| TCTTTATTAGGCTATTGGGT+TGG | 0.531267 | 1_1:+3252403 | Msa0001590:five_prime_UTR |
| TTGAATTGATTTGAAATGGT+GGG | 0.531524 | 1_1:+3252512 | Msa0001590:five_prime_UTR |
| GCCAGGGTTTGTGTTGAATG+AGG | 0.535969 | 1_1:+3253870 | Msa0001590:CDS |
| GGGTGAAGCAAGCATGATAG+AGG | 0.536814 | 1_1:+3254799 | Msa0001590:CDS |
| TCAGCAGAAATGGAAGAAGA+AGG | 0.538184 | 1_1:+3252585 | Msa0001590:CDS |
| GGCTATGTTTGGTTCAAATG+AGG | 0.540156 | 1_1:+3258376 | Msa0001590:three_prime_UTR |
| AAGAGAATGGTGTACAAGCA+AGG | 0.546374 | 1_1:+3257555 | Msa0001590:CDS |
| TTTGAATTGATTTGAAATGG+TGG | 0.548180 | 1_1:+3252511 | Msa0001590:five_prime_UTR |
| ACTCTGCTTGTATCAGCCAC+TGG | 0.557794 | 1_1:-3258079 | None:intergenic |
| GAAGCATGCCAAGGTTGTAG+TGG | 0.562145 | 1_1:+3255978 | Msa0001590:CDS |
| ATTGATTTGAAATGGTGGGT+TGG | 0.566299 | 1_1:+3252516 | Msa0001590:five_prime_UTR |
| TTCAACACAAACCCTGGCCT+AGG | 0.569608 | 1_1:-3253865 | None:intergenic |
| GTTCATCTGGTATACAGTTG+TGG | 0.575948 | 1_1:-3256599 | None:intergenic |
| GCCTCATTCAACACAAACCC+TGG | 0.577011 | 1_1:-3253871 | None:intergenic |
| ATATCAGAAAAGTGTTAAAG+GGG | 0.582431 | 1_1:-3252013 | None:intergenic |
| ATGTCTAAGTAAAATTCGCT+CGG | 0.583854 | 1_1:-3254822 | None:intergenic |
| TGAGTGTTAAGAGTGGAACA+AGG | 0.586057 | 1_1:-3251982 | None:intergenic |
| AACAAAATGCTTATTGCCAG+TGG | 0.587980 | 1_1:+3258063 | Msa0001590:three_prime_UTR |
| CTCACAACATGAATTAACTT+GGG | 0.591678 | 1_1:+3258355 | Msa0001590:three_prime_UTR |
| GATCAGTGACACATACTGCA+TGG | 0.596005 | 1_1:+3256897 | Msa0001590:CDS |
| GTTTGTTGTTTATGCAGATG+CGG | 0.596175 | 1_1:+3252647 | Msa0001590:CDS |
| ATCAGTGACACATACTGCAT+GGG | 0.597196 | 1_1:+3256898 | Msa0001590:CDS |
| AGAGAATGGTGTACAAGCAA+GGG | 0.597758 | 1_1:+3257556 | Msa0001590:CDS |
| GAGATCGTGAGCGCCGTGGA+TGG | 0.599731 | 1_1:+3256936 | Msa0001590:CDS |
| TGTAGAGTGAGTGTTAAGAG+TGG | 0.600600 | 1_1:-3251989 | None:intergenic |
| GCATGCCAAGGTTGTAGTGG+AGG | 0.609985 | 1_1:+3255981 | Msa0001590:CDS |
| TTGGATCTTCTACTTCTGAG+TGG | 0.624570 | 1_1:+3252436 | Msa0001590:five_prime_UTR |
| AGACTGAATACCGAAGAGAA+TGG | 0.627600 | 1_1:+3257542 | Msa0001590:CDS |
| AAGTCACTGGATGCCATCCA+CGG | 0.632825 | 1_1:-3256949 | None:intergenic |
| GCATCCCAAACCAATTCCAA+AGG | 0.633005 | 1_1:-3252769 | None:intergenic |
| TCCAGAGATCGTGAGCGCCG+TGG | 0.637645 | 1_1:+3256932 | Msa0001590:CDS |
| GAGTGAGACATTGTTTATGT+CGG | 0.638091 | 1_1:-3258335 | None:intergenic |
| TATACCCTCACCTATCTGAG+AGG | 0.685286 | 1_1:-3254880 | None:intergenic |
| AGCTTCGCTGACACAAAAGG+AGG | 0.705360 | 1_1:+3255757 | Msa0001590:intron |
| GCTGACCAGGAAGCATGCCA+AGG | 0.707493 | 1_1:+3255969 | Msa0001590:CDS |
| TATCTGAGAGGAAAACAAAG+CGG | 0.756541 | 1_1:-3254868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAATTTAATAAGCAT+CGG | - | chr1_1:3256995-3257014 | None:intergenic | 10.0% |
| !!! | TAATTAATATTTTGTTAGAA+TGG | + | chr1_1:3257130-3257149 | Msa0001590:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAAGCA+AGG | + | chr1_1:3257229-3257248 | Msa0001590:intron | 10.0% |
| !!! | TGATTTTTTTTTTTTTTTGT+AGG | + | chr1_1:3257498-3257517 | Msa0001590:intron | 10.0% |
| !!! | ACTATTATTTTTTATAATGA+GGG | - | chr1_1:3258301-3258320 | None:intergenic | 10.0% |
| !!! | AACTATTATTTTTTATAATG+AGG | - | chr1_1:3258302-3258321 | None:intergenic | 10.0% |
| !!! | TTTTGTTTCTATTTGTTTTT+TGG | + | chr1_1:3252830-3252849 | Msa0001590:intron | 15.0% |
| !!! | TAATAGTAGTTTTTACTTTT+TGG | + | chr1_1:3253339-3253358 | Msa0001590:intron | 15.0% |
| !!! | TTGAAATAATCTCATTTTAT+CGG | + | chr1_1:3254619-3254638 | Msa0001590:intron | 15.0% |
| !! | TATATAATGATTGAAGTTTA+TGG | - | chr1_1:3254919-3254938 | None:intergenic | 15.0% |
| !! | ATTTAACAAAACTAATTGTT+GGG | - | chr1_1:3255623-3255642 | None:intergenic | 15.0% |
| !! | TATTTAACAAAACTAATTGT+TGG | - | chr1_1:3255624-3255643 | None:intergenic | 15.0% |
| !! | AAATGAATAATTAACTACAA+AGG | - | chr1_1:3255695-3255714 | None:intergenic | 15.0% |
| !! | GATGCTTATTAAATTTATAA+AGG | + | chr1_1:3256994-3257013 | Msa0001590:CDS | 15.0% |
| !! | ATTAAGATTCAGAATTTATT+AGG | - | chr1_1:3257301-3257320 | None:intergenic | 15.0% |
| !!! | AATATCAGAAAAGTGTTAAA+GGG | - | chr1_1:3252017-3252036 | None:intergenic | 20.0% |
| !!! | TCACAAAAATTGTTGATTTT+TGG | - | chr1_1:3252092-3252111 | None:intergenic | 20.0% |
| !! | TTCTTGCTAAATTCTTTATT+AGG | + | chr1_1:3252391-3252410 | Msa0001590:five_prime_UTR | 20.0% |
| !! | TAAATTCTTTATTAGGCTAT+TGG | + | chr1_1:3252398-3252417 | Msa0001590:five_prime_UTR | 20.0% |
| !! | AAATTCTTTATTAGGCTATT+GGG | + | chr1_1:3252399-3252418 | Msa0001590:five_prime_UTR | 20.0% |
| !!! | AAATGAAATTTGTTAGTAGA+AGG | + | chr1_1:3253089-3253108 | Msa0001590:intron | 20.0% |
| !! | TTGTTTATGGTAAGATAATA+TGG | + | chr1_1:3253290-3253309 | Msa0001590:intron | 20.0% |
| !!! | TTTCTCTATATAGTTTTTCT+AGG | - | chr1_1:3254064-3254083 | None:intergenic | 20.0% |
| !! | AACTATATAGAGAAACTATT+AGG | + | chr1_1:3254069-3254088 | Msa0001590:intron | 20.0% |
| !! | GATAGAAATAAGAAACTATT+TGG | + | chr1_1:3254116-3254135 | Msa0001590:intron | 20.0% |
| !! | AACTATTTGGTAGAATATTA+TGG | + | chr1_1:3254129-3254148 | Msa0001590:intron | 20.0% |
| !!! | TTTGACTTTATTTGATCTTT+TGG | + | chr1_1:3254392-3254411 | Msa0001590:intron | 20.0% |
| !!! | TTCTTTTGATGTTTTAAACA+TGG | - | chr1_1:3254687-3254706 | None:intergenic | 20.0% |
| !! | ATGTTAACTAAATATCATGA+AGG | - | chr1_1:3254758-3254777 | None:intergenic | 20.0% |
| !! | GGTTTCAAAAAAATTTAGTT+TGG | - | chr1_1:3255107-3255126 | None:intergenic | 20.0% |
| !! | AGATTAATGTCGTATATATA+TGG | - | chr1_1:3255516-3255535 | None:intergenic | 20.0% |
| !! | ATAAAAAGATAGGTATAAGA+TGG | - | chr1_1:3255927-3255946 | None:intergenic | 20.0% |
| !! | AGAAGAATTCATAAAAAGAT+AGG | - | chr1_1:3255937-3255956 | None:intergenic | 20.0% |
| !!! | TTGCAAAATTTTTGAAACAT+TGG | - | chr1_1:3256021-3256040 | None:intergenic | 20.0% |
| !!! | AATGTTTCAAAAATTTTGCA+AGG | + | chr1_1:3256020-3256039 | Msa0001590:CDS | 20.0% |
| !! | GAAATAATAAATGAAGCAAA+AGG | - | chr1_1:3256135-3256154 | None:intergenic | 20.0% |
| !!! | TTGGGTTTTATAACATTTAA+TGG | - | chr1_1:3256195-3256214 | None:intergenic | 20.0% |
| !!! | ATGGATTAAAAAACACTAAA+TGG | - | chr1_1:3256226-3256245 | None:intergenic | 20.0% |
| !! | TTCAATATTTCATTCTGAAT+TGG | + | chr1_1:3256474-3256493 | Msa0001590:intron | 20.0% |
| !! | AAAATATTAAAGCAAAACCA+GGG | - | chr1_1:3256813-3256832 | None:intergenic | 20.0% |
| !! | AAAAATATTAAAGCAAAACC+AGG | - | chr1_1:3256814-3256833 | None:intergenic | 20.0% |
| !! | TTTCATTCTGTGATAATAAT+AGG | + | chr1_1:3257065-3257084 | Msa0001590:intron | 20.0% |
| !! | TTCATTCTGTGATAATAATA+GGG | + | chr1_1:3257066-3257085 | Msa0001590:intron | 20.0% |
| !! | TTGAGTTATTTATCTAAACA+AGG | + | chr1_1:3257966-3257985 | Msa0001590:intron | 20.0% |
| !!! | ATATCAGAAAAGTGTTAAAG+GGG | - | chr1_1:3252016-3252035 | None:intergenic | 25.0% |
| !!! | GAATATCAGAAAAGTGTTAA+AGG | - | chr1_1:3252018-3252037 | None:intergenic | 25.0% |
| ! | TAGAATATCATTGCTCTATT+TGG | - | chr1_1:3252065-3252084 | None:intergenic | 25.0% |
| !!! | TCTACTTTTCCTTTGAAAAT+TGG | - | chr1_1:3252121-3252140 | None:intergenic | 25.0% |
| !! | TTTTCCTTTATATTGCTTTG+TGG | + | chr1_1:3252351-3252370 | Msa0001590:five_prime_UTR | 25.0% |
| ! | TTGAAATGAGTGTTAAAGTT+TGG | + | chr1_1:3252466-3252485 | Msa0001590:five_prime_UTR | 25.0% |
| !!! | GCTTTTGAATTGATTTGAAA+TGG | + | chr1_1:3252508-3252527 | Msa0001590:five_prime_UTR | 25.0% |
| !!! | TTTGAATTGATTTGAAATGG+TGG | + | chr1_1:3252511-3252530 | Msa0001590:five_prime_UTR | 25.0% |
| !!! | TTGAATTGATTTGAAATGGT+GGG | + | chr1_1:3252512-3252531 | Msa0001590:five_prime_UTR | 25.0% |
| !! | TTTTAGATTCAAAAGGGTTA+GGG | + | chr1_1:3252539-3252558 | Msa0001590:five_prime_UTR | 25.0% |
| ! | ATCTGGAAAAAGAAACATAT+AGG | - | chr1_1:3252968-3252987 | None:intergenic | 25.0% |
| !!! | GTTGATGTTACCTTTTTTAT+AGG | + | chr1_1:3253037-3253056 | Msa0001590:intron | 25.0% |
| ! | CTAACATTTGCCTATAAAAA+AGG | - | chr1_1:3253050-3253069 | None:intergenic | 25.0% |
| !! | TTTTTATAGGCAAATGTTAG+TGG | + | chr1_1:3253050-3253069 | Msa0001590:intron | 25.0% |
| !!! | TGTTAGTGGTTGTTTTATTA+AGG | + | chr1_1:3253064-3253083 | Msa0001590:intron | 25.0% |
| !!! | GTTAGTGGTTGTTTTATTAA+GGG | + | chr1_1:3253065-3253084 | Msa0001590:intron | 25.0% |
| !!! | TTAGTGGTTGTTTTATTAAG+GGG | + | chr1_1:3253066-3253085 | Msa0001590:intron | 25.0% |
| ! | GACATAACTGTGTATTTAAA+AGG | - | chr1_1:3253414-3253433 | None:intergenic | 25.0% |
| ! | AAATCATTATTCCAAAGAAG+AGG | - | chr1_1:3253556-3253575 | None:intergenic | 25.0% |
| ! | AACATATGGTCAATAAGTTA+TGG | - | chr1_1:3253639-3253658 | None:intergenic | 25.0% |
| ! | TCCACAATAATTTAGCTAAA+GGG | - | chr1_1:3253670-3253689 | None:intergenic | 25.0% |
| ! | TTCCACAATAATTTAGCTAA+AGG | - | chr1_1:3253671-3253690 | None:intergenic | 25.0% |
| !! | AACATTTGTATTGCATTTTC+AGG | + | chr1_1:3253810-3253829 | Msa0001590:intron | 25.0% |
| !! | ACATTTGTATTGCATTTTCA+GGG | + | chr1_1:3253811-3253830 | Msa0001590:intron | 25.0% |
| ! | AAAAAGCTGATAACAACTTA+GGG | - | chr1_1:3254316-3254335 | None:intergenic | 25.0% |
| ! | AAAAAAGCTGATAACAACTT+AGG | - | chr1_1:3254317-3254336 | None:intergenic | 25.0% |
| ! | AAGCTCTTCTGTATAATTTA+TGG | + | chr1_1:3254341-3254360 | Msa0001590:intron | 25.0% |
| ! | AAGTCAAACTTCTTTCATAT+AGG | - | chr1_1:3254380-3254399 | None:intergenic | 25.0% |
| ! | ATTAATCTGTTTATCCAAAC+AGG | + | chr1_1:3254447-3254466 | Msa0001590:intron | 25.0% |
| ! | TTAATCTGTTTATCCAAACA+GGG | + | chr1_1:3254448-3254467 | Msa0001590:intron | 25.0% |
| ! | CATGTGATAAATAAACACAT+AGG | - | chr1_1:3254544-3254563 | None:intergenic | 25.0% |
| ! | CTATGTGTTTATTTATCACA+TGG | + | chr1_1:3254542-3254561 | Msa0001590:intron | 25.0% |
| ! | ACTTTATGAACAATTCAGTT+CGG | - | chr1_1:3254994-3255013 | None:intergenic | 25.0% |
| ! | ACTGAATTGTTCATAAAGTT+TGG | + | chr1_1:3254995-3255014 | Msa0001590:intron | 25.0% |
| !!! | TTCTAATATTCGATTTGGTT+TGG | - | chr1_1:3255173-3255192 | None:intergenic | 25.0% |
| !! | AACAGTTCTAATATTCGATT+TGG | - | chr1_1:3255178-3255197 | None:intergenic | 25.0% |
| !!! | TAGTTATCAGTTTTGTTTCA+CGG | - | chr1_1:3255227-3255246 | None:intergenic | 25.0% |
| ! | TGAAACAAAACTGATAACTA+GGG | + | chr1_1:3255227-3255246 | Msa0001590:intron | 25.0% |
| ! | CAATCAACTGAAATATAGTA+AGG | - | chr1_1:3255355-3255374 | None:intergenic | 25.0% |
| ! | TTGAGACACATAATATAAGA+AGG | - | chr1_1:3256054-3256073 | None:intergenic | 25.0% |
| ! | CTTATATTATGTGTCTCAAT+TGG | + | chr1_1:3256055-3256074 | Msa0001590:intron | 25.0% |
| ! | CATTTGTTCATATAATTCCT+AGG | - | chr1_1:3256520-3256539 | None:intergenic | 25.0% |
| ! | AATAATAGGGTTATCATACT+AGG | + | chr1_1:3257079-3257098 | Msa0001590:intron | 25.0% |
| !!! | TTCTAAGTCTTGTTAAATAG+CGG | + | chr1_1:3257421-3257440 | Msa0001590:intron | 25.0% |
| ! | TAGTAAACTTTCTTGCAAAA+AGG | - | chr1_1:3257600-3257619 | None:intergenic | 25.0% |
| !! | TTTTTGCAAGAAAGTTTACT+AGG | + | chr1_1:3257599-3257618 | Msa0001590:CDS | 25.0% |
| ! | ATGGTAAGTTCATATATCAT+AGG | + | chr1_1:3257646-3257665 | Msa0001590:intron | 25.0% |
| ! | TGGTAAGTTCATATATCATA+GGG | + | chr1_1:3257647-3257666 | Msa0001590:intron | 25.0% |
| !! | TTTAGTTTCTTCGATTTGAT+TGG | + | chr1_1:3257726-3257745 | Msa0001590:intron | 25.0% |
| ! | AAAGTCAAACTATGTTTCAT+AGG | - | chr1_1:3257872-3257891 | None:intergenic | 25.0% |
| ! | ATAAGTGCTTATCATATTAG+TGG | - | chr1_1:3257931-3257950 | None:intergenic | 25.0% |
| ! | CAGAAAATAAGTAACAATCT+CGG | - | chr1_1:3258000-3258019 | None:intergenic | 25.0% |
| !! | ACTTTTCCTTTGAAAATTGG+TGG | - | chr1_1:3252118-3252137 | None:intergenic | 30.0% |
| AGGAAAAGTAGATAGTAACA+CGG | + | chr1_1:3252129-3252148 | Msa0001590:intron | 30.0% | |
| ACTTTCTCTCTCTATTACTT+TGG | - | chr1_1:3252158-3252177 | None:intergenic | 30.0% | |
| !! | GTGAAAGTGTTGCTATTATT+TGG | - | chr1_1:3252259-3252278 | None:intergenic | 30.0% |
| CTATCCACAAAGCAATATAA+AGG | - | chr1_1:3252358-3252377 | None:intergenic | 30.0% | |
| !!! | GGTTGGTTTTAGATTCAAAA+GGG | + | chr1_1:3252533-3252552 | Msa0001590:five_prime_UTR | 30.0% |
| !! | GTTTTAGATTCAAAAGGGTT+AGG | + | chr1_1:3252538-3252557 | Msa0001590:five_prime_UTR | 30.0% |
| GTAGAATATGAAGAAGAAAG+TGG | + | chr1_1:3252561-3252580 | Msa0001590:exon | 30.0% | |
| !! | GAAGGTTTTTGCTTTGATTT+TGG | + | chr1_1:3252603-3252622 | Msa0001590:CDS | 30.0% |
| ATGAAGAGAAAAGCAATCTT+AGG | - | chr1_1:3252733-3252752 | None:intergenic | 30.0% | |
| !!! | TTTTACTTTTTGGAGAGCTT+AGG | + | chr1_1:3253349-3253368 | Msa0001590:intron | 30.0% |
| AAATACACAGTTATGTCCTT+TGG | + | chr1_1:3253417-3253436 | Msa0001590:intron | 30.0% | |
| AATACACAGTTATGTCCTTT+GGG | + | chr1_1:3253418-3253437 | Msa0001590:intron | 30.0% | |
| GATTGAGTATTTAAGTGACT+TGG | + | chr1_1:3253468-3253487 | Msa0001590:intron | 30.0% | |
| TTAAAAGCTAGCTATCAAGA+GGG | - | chr1_1:3253499-3253518 | None:intergenic | 30.0% | |
| TCCCTTTAGCTAAATTATTG+TGG | + | chr1_1:3253666-3253685 | Msa0001590:intron | 30.0% | |
| ATTTCATAGAATGCTAGTTG+TGG | + | chr1_1:3253758-3253777 | Msa0001590:intron | 30.0% | |
| TCAAGTTAATGATAGCATAC+AGG | + | chr1_1:3253924-3253943 | Msa0001590:CDS | 30.0% | |
| CATAAGATAGTAAATGGACA+TGG | - | chr1_1:3253997-3254016 | None:intergenic | 30.0% | |
| CCAACACATAAGATAGTAAA+TGG | - | chr1_1:3254003-3254022 | None:intergenic | 30.0% | |
| CCATTTACTATCTTATGTGT+TGG | + | chr1_1:3254000-3254019 | Msa0001590:intron | 30.0% | |
| AATAAGCTGTTATAGTTGAC+TGG | + | chr1_1:3254027-3254046 | Msa0001590:intron | 30.0% | |
| ATAAGCTGTTATAGTTGACT+GGG | + | chr1_1:3254028-3254047 | Msa0001590:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | + | chr1_1:3254094-3254113 | Msa0001590:intron | 30.0% | |
| ! | TCAAATAAGTCGATTCAAAC+AGG | - | chr1_1:3254225-3254244 | None:intergenic | 30.0% |
| TAATCTGTTTATCCAAACAG+GGG | + | chr1_1:3254449-3254468 | Msa0001590:intron | 30.0% | |
| TAATGTTACATTCCTTTCCT+TGG | + | chr1_1:3254474-3254493 | Msa0001590:intron | 30.0% | |
| AGACTATAGAACTTCATAGT+TGG | - | chr1_1:3254513-3254532 | None:intergenic | 30.0% | |
| ! | TGATCTTTTTGCAGATAGAT+TGG | + | chr1_1:3254777-3254796 | Msa0001590:intron | 30.0% |
| ! | GATCTTTTTGCAGATAGATT+GGG | + | chr1_1:3254778-3254797 | Msa0001590:intron | 30.0% |
| ! | ATCTTTTTGCAGATAGATTG+GGG | + | chr1_1:3254779-3254798 | Msa0001590:intron | 30.0% |
| ATGTCTAAGTAAAATTCGCT+CGG | - | chr1_1:3254825-3254844 | None:intergenic | 30.0% | |
| AAACCAAATGATTCTTTGTG+AGG | + | chr1_1:3255122-3255141 | Msa0001590:intron | 30.0% | |
| GTGAAACAAAACTGATAACT+AGG | + | chr1_1:3255226-3255245 | Msa0001590:intron | 30.0% | |
| CCATATAATTAAGCAACGTA+TGG | - | chr1_1:3255287-3255306 | None:intergenic | 30.0% | |
| CCATACGTTGCTTAATTATA+TGG | + | chr1_1:3255284-3255303 | Msa0001590:intron | 30.0% | |
| CAGTTATAAACTGGAATAAC+TGG | - | chr1_1:3255805-3255824 | None:intergenic | 30.0% | |
| CAGTTATTCCAGTTTATAAC+TGG | + | chr1_1:3255803-3255822 | Msa0001590:CDS | 30.0% | |
| ! | TTTTATGAATTCTTCTGCAG+TGG | + | chr1_1:3255941-3255960 | Msa0001590:intron | 30.0% |
| TTTATGAATTCTTCTGCAGT+GGG | + | chr1_1:3255942-3255961 | Msa0001590:intron | 30.0% | |
| AGACACATAATATAAGAAGG+AGG | - | chr1_1:3256051-3256070 | None:intergenic | 30.0% | |
| ! | AAAACCATGAGAGTATATGA+TGG | - | chr1_1:3256159-3256178 | None:intergenic | 30.0% |
| CACTAAATGGAAGAAAGATT+GGG | - | chr1_1:3256213-3256232 | None:intergenic | 30.0% | |
| ACACTAAATGGAAGAAAGAT+TGG | - | chr1_1:3256214-3256233 | None:intergenic | 30.0% | |
| ATTGGTACATGATGTCAATT+AGG | + | chr1_1:3256492-3256511 | Msa0001590:intron | 30.0% | |
| !! | GAATGGTACTTGATAATGAT+AGG | + | chr1_1:3257147-3257166 | Msa0001590:intron | 30.0% |
| ATTCAGAATTTATTAGGAGC+AGG | - | chr1_1:3257295-3257314 | None:intergenic | 30.0% | |
| ATCTTTCATTAGTTGACTGA+CGG | - | chr1_1:3257332-3257351 | None:intergenic | 30.0% | |
| !! | CTTATTTTCTGATTCTCTGT+TGG | + | chr1_1:3258009-3258028 | Msa0001590:intron | 30.0% |
| ACTCACAACATGAATTAACT+TGG | + | chr1_1:3258354-3258373 | Msa0001590:three_prime_UTR | 30.0% | |
| CTCACAACATGAATTAACTT+GGG | + | chr1_1:3258355-3258374 | Msa0001590:three_prime_UTR | 30.0% | |
| ! | TGACAACCACCAATTTTCAA+AGG | + | chr1_1:3252109-3252128 | Msa0001590:intron | 35.0% |
| GAGAGATAAAGTTGTCACAT+AGG | + | chr1_1:3252197-3252216 | Msa0001590:intron | 35.0% | |
| TCACATAGGTTGTCACAAAA+TGG | + | chr1_1:3252211-3252230 | Msa0001590:intron | 35.0% | |
| TCTTTATTAGGCTATTGGGT+TGG | + | chr1_1:3252403-3252422 | Msa0001590:five_prime_UTR | 35.0% | |
| !! | ATTGATTTGAAATGGTGGGT+TGG | + | chr1_1:3252516-3252535 | Msa0001590:five_prime_UTR | 35.0% |
| !!! | GGGTTGGTTTTAGATTCAAA+AGG | + | chr1_1:3252532-3252551 | Msa0001590:five_prime_UTR | 35.0% |
| !! | GGTTTTTGCTTTGATTTTGG+TGG | + | chr1_1:3252606-3252625 | Msa0001590:CDS | 35.0% |
| !! | TTTTGCTTTGATTTTGGTGG+TGG | + | chr1_1:3252609-3252628 | Msa0001590:CDS | 35.0% |
| !! | GTTTGTTGTTTATGCAGATG+CGG | + | chr1_1:3252647-3252666 | Msa0001590:CDS | 35.0% |
| ! | ATGCGGTATACTCATGTTTT+GGG | + | chr1_1:3252664-3252683 | Msa0001590:CDS | 35.0% |
| !! | TTGCTTTTCTCTTCATTGCA+AGG | + | chr1_1:3252737-3252756 | Msa0001590:CDS | 35.0% |
| TTCTCTTCATTGCAAGGAAT+AGG | + | chr1_1:3252743-3252762 | Msa0001590:CDS | 35.0% | |
| ! | GTGTGTACTTGGTGATTAAT+AGG | + | chr1_1:3252873-3252892 | Msa0001590:intron | 35.0% |
| ! | TGTACTTGGTGATTAATAGG+AGG | + | chr1_1:3252876-3252895 | Msa0001590:intron | 35.0% |
| !! | AGTGTTACAAGTTCTGAATC+TGG | - | chr1_1:3252985-3253004 | None:intergenic | 35.0% |
| AATATTACGAACGAGGATCT+AGG | - | chr1_1:3253122-3253141 | None:intergenic | 35.0% | |
| ! | ATCATTGATTAGTGCAGTGT+AGG | + | chr1_1:3253262-3253281 | Msa0001590:intron | 35.0% |
| ! | TCATTGATTAGTGCAGTGTA+GGG | + | chr1_1:3253263-3253282 | Msa0001590:intron | 35.0% |
| AGTGTAGGGACAATTGTTTA+TGG | + | chr1_1:3253277-3253296 | Msa0001590:intron | 35.0% | |
| ATACACAGTTATGTCCTTTG+GGG | + | chr1_1:3253419-3253438 | Msa0001590:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+AGG | - | chr1_1:3253500-3253519 | None:intergenic | 35.0% | |
| !!! | TGATAGCTAGCTTTTAAGAG+AGG | + | chr1_1:3253502-3253521 | Msa0001590:intron | 35.0% |
| !!! | GATAGCTAGCTTTTAAGAGA+GGG | + | chr1_1:3253503-3253522 | Msa0001590:intron | 35.0% |
| ! | TGACAAGTATCAAAGCACTT+GGG | - | chr1_1:3253532-3253551 | None:intergenic | 35.0% |
| ! | ATGACAAGTATCAAAGCACT+TGG | - | chr1_1:3253533-3253552 | None:intergenic | 35.0% |
| ATACTTGTCATCCTCTTCTT+TGG | + | chr1_1:3253542-3253561 | Msa0001590:intron | 35.0% | |
| AAATGTTGTTATGACAAGCG+AGG | - | chr1_1:3253596-3253615 | None:intergenic | 35.0% | |
| AAAGGGAGTCTCTTAACATA+TGG | - | chr1_1:3253653-3253672 | None:intergenic | 35.0% | |
| !! | TTTGTATTGCATTTTCAGGG+AGG | + | chr1_1:3253814-3253833 | Msa0001590:intron | 35.0% |
| ! | TCTCAATTTTCGTTCATCCT+AGG | + | chr1_1:3253848-3253867 | Msa0001590:CDS | 35.0% |
| ! | GTTGTTGTTGTAGTTGACTT+AGG | + | chr1_1:3254199-3254218 | Msa0001590:intron | 35.0% |
| TTCAATCTCACAAGCGTTTA+TGG | - | chr1_1:3254260-3254279 | None:intergenic | 35.0% | |
| GAGATTGAATGAGAGAACTT+AGG | + | chr1_1:3254271-3254290 | Msa0001590:intron | 35.0% | |
| TGTAACATTAAACCCCTGTT+TGG | - | chr1_1:3254464-3254483 | None:intergenic | 35.0% | |
| AAAACAAAGCGGTCATTTAG+AGG | - | chr1_1:3254860-3254879 | None:intergenic | 35.0% | |
| TATCTGAGAGGAAAACAAAG+CGG | - | chr1_1:3254871-3254890 | None:intergenic | 35.0% | |
| AAGTACTCTCCACTTACTAT+AGG | + | chr1_1:3254938-3254957 | Msa0001590:intron | 35.0% | |
| ATGAAGAGTCCTATAGTAAG+TGG | - | chr1_1:3254950-3254969 | None:intergenic | 35.0% | |
| ACTTACTATAGGACTCTTCA+TGG | + | chr1_1:3254949-3254968 | Msa0001590:intron | 35.0% | |
| AGTCCTCACAAAGAATCATT+TGG | - | chr1_1:3255128-3255147 | None:intergenic | 35.0% | |
| GAAAAAGCAAAAAACTGAGC+TGG | + | chr1_1:3255200-3255219 | Msa0001590:intron | 35.0% | |
| GTGTAGCTGAAGTTGTATAA+AGG | - | chr1_1:3255398-3255417 | None:intergenic | 35.0% | |
| AGGTCGTTACAATCCAAAAA+TGG | + | chr1_1:3255777-3255796 | Msa0001590:CDS | 35.0% | |
| ! | GGAATAACTGGATCCATTTT+TGG | - | chr1_1:3255793-3255812 | None:intergenic | 35.0% |
| ! | CCTTTTCTCCAGTTATAAAC+TGG | - | chr1_1:3255814-3255833 | None:intergenic | 35.0% |
| CCAGTTTATAACTGGAGAAA+AGG | + | chr1_1:3255811-3255830 | Msa0001590:CDS | 35.0% | |
| TTCTCCATCATATACTCTCA+TGG | + | chr1_1:3256152-3256171 | Msa0001590:intron | 35.0% | |
| AAGAGACAAGCACAAATGTA+TGG | - | chr1_1:3256245-3256264 | None:intergenic | 35.0% | |
| ATGATGTCAATTAGGTTCCT+AGG | + | chr1_1:3256500-3256519 | Msa0001590:intron | 35.0% | |
| GTTTGAACATAGTGTTCATC+TGG | - | chr1_1:3256615-3256634 | None:intergenic | 35.0% | |
| ACACTATGTTCAAACATTGC+TGG | + | chr1_1:3256620-3256639 | Msa0001590:CDS | 35.0% | |
| ATGCAATAGTGTTCACAGAA+AGG | - | chr1_1:3256662-3256681 | None:intergenic | 35.0% | |
| ! | GAGGTCTTTTTGCTAGATTT+GGG | - | chr1_1:3256858-3256877 | None:intergenic | 35.0% |
| !! | TTCGTGTTAGTTCTTTTTCG+AGG | - | chr1_1:3256877-3256896 | None:intergenic | 35.0% |
| TCTGAGAACTTATAAGTCAC+TGG | - | chr1_1:3256965-3256984 | None:intergenic | 35.0% | |
| ! | TCAAGAAAGTGATTTTGCAG+TGG | - | chr1_1:3257039-3257058 | None:intergenic | 35.0% |
| ! | AAAAGCAAGGTGTGAGATTT+TGG | + | chr1_1:3257242-3257261 | Msa0001590:intron | 35.0% |
| ATTTATTAGGAGCAGGATCA+AGG | - | chr1_1:3257288-3257307 | None:intergenic | 35.0% | |
| !! | CAGTCTAAAGGTGTTTATGT+CGG | - | chr1_1:3257770-3257789 | None:intergenic | 35.0% |
| AGCTCTTTCAAACAGTCTAA+AGG | - | chr1_1:3257782-3257801 | None:intergenic | 35.0% | |
| CTATGTTTCATAGGCTATCT+TGG | - | chr1_1:3257863-3257882 | None:intergenic | 35.0% | |
| AACAAAATGCTTATTGCCAG+TGG | + | chr1_1:3258063-3258082 | Msa0001590:three_prime_UTR | 35.0% | |
| GAGTGAGACATTGTTTATGT+CGG | - | chr1_1:3258338-3258357 | None:intergenic | 35.0% | |
| ! | GAATTAACTTGGGCTATGTT+TGG | + | chr1_1:3258365-3258384 | Msa0001590:three_prime_UTR | 35.0% |
| TGAGTGTTAAGAGTGGAACA+AGG | - | chr1_1:3251985-3252004 | None:intergenic | 40.0% | |
| TGTAGAGTGAGTGTTAAGAG+TGG | - | chr1_1:3251992-3252011 | None:intergenic | 40.0% | |
| !! | ATTAGGCTATTGGGTTGGTA+TGG | + | chr1_1:3252408-3252427 | Msa0001590:five_prime_UTR | 40.0% |
| TTGGATCTTCTACTTCTGAG+TGG | + | chr1_1:3252436-3252455 | Msa0001590:five_prime_UTR | 40.0% | |
| AGAAAGTGGTTCAGCAGAAA+TGG | + | chr1_1:3252575-3252594 | Msa0001590:CDS | 40.0% | |
| TCAGCAGAAATGGAAGAAGA+AGG | + | chr1_1:3252585-3252604 | Msa0001590:CDS | 40.0% | |
| ! | GATGCGGTATACTCATGTTT+TGG | + | chr1_1:3252663-3252682 | Msa0001590:CDS | 40.0% |
| ! | TGCGGTATACTCATGTTTTG+GGG | + | chr1_1:3252665-3252684 | Msa0001590:CDS | 40.0% |
| !! | GAATAGGCTTCCTTTGGAAT+TGG | + | chr1_1:3252759-3252778 | Msa0001590:CDS | 40.0% |
| !! | GCTTCCTTTGGAATTGGTTT+GGG | + | chr1_1:3252765-3252784 | Msa0001590:CDS | 40.0% |
| ! | TGGTTTGGGATGCATTCTTT+AGG | + | chr1_1:3252779-3252798 | Msa0001590:CDS | 40.0% |
| ! | GGTTTGGGATGCATTCTTTA+GGG | + | chr1_1:3252780-3252799 | Msa0001590:CDS | 40.0% |
| TATGTGTGTGTGTGTGTACT+TGG | + | chr1_1:3252862-3252881 | Msa0001590:intron | 40.0% | |
| CTAGAGGAATATTACGAACG+AGG | - | chr1_1:3253129-3253148 | None:intergenic | 40.0% | |
| ATCAACACATCCTCGAAGAA+GGG | - | chr1_1:3253155-3253174 | None:intergenic | 40.0% | |
| GTCTATGGAGTTCTATCAGA+AGG | + | chr1_1:3253377-3253396 | Msa0001590:intron | 40.0% | |
| !! | AGATTCTAGTTCATCCCCAA+AGG | - | chr1_1:3253436-3253455 | None:intergenic | 40.0% |
| TGCTAGTTGTGGAAATGTTG+AGG | + | chr1_1:3253769-3253788 | Msa0001590:intron | 40.0% | |
| GAAATGTTGAGGTGCAGTAA+TGG | + | chr1_1:3253780-3253799 | Msa0001590:intron | 40.0% | |
| GTTTCAAACAACGAGAGAAG+AGG | - | chr1_1:3253952-3253971 | None:intergenic | 40.0% | |
| TGTTATAGTTGACTGGGTAG+AGG | + | chr1_1:3254034-3254053 | Msa0001590:intron | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr1_1:3254178-3254197 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr1_1:3254179-3254198 | None:intergenic | 40.0% |
| !!! | GCTTTGTTTTCCTCTCAGAT+AGG | + | chr1_1:3254870-3254889 | Msa0001590:CDS | 40.0% |
| ! | TTTTCCTCTCAGATAGGTGA+GGG | + | chr1_1:3254876-3254895 | Msa0001590:intron | 40.0% |
| TTGGTACGAAACCACATAAC+CGG | - | chr1_1:3255088-3255107 | None:intergenic | 40.0% | |
| TGATTCTTTGTGAGGACTGT+TGG | + | chr1_1:3255130-3255149 | Msa0001590:intron | 40.0% | |
| !!! | CACCAACTAGTTTTGTCGAT+AGG | + | chr1_1:3255438-3255457 | Msa0001590:CDS | 40.0% |
| CACCTATCGACAAAACTAGT+TGG | - | chr1_1:3255443-3255462 | None:intergenic | 40.0% | |
| TAACTGGAGAAAAGGATCTC+AGG | + | chr1_1:3255819-3255838 | Msa0001590:CDS | 40.0% | |
| ACTTGATCCCTCCAAAATTC+GGG | - | chr1_1:3256328-3256347 | None:intergenic | 40.0% | |
| GACTTGATCCCTCCAAAATT+CGG | - | chr1_1:3256329-3256348 | None:intergenic | 40.0% | |
| TGGTATACAGTTGTGGATCT+TGG | - | chr1_1:3256595-3256614 | None:intergenic | 40.0% | |
| GTTCATCTGGTATACAGTTG+TGG | - | chr1_1:3256602-3256621 | None:intergenic | 40.0% | |
| !! | ATATTTTTACGCGATCACCC+TGG | + | chr1_1:3256793-3256812 | Msa0001590:intron | 40.0% |
| ! | CGAGGTCTTTTTGCTAGATT+TGG | - | chr1_1:3256859-3256878 | None:intergenic | 40.0% |
| ATCAGTGACACATACTGCAT+GGG | + | chr1_1:3256898-3256917 | Msa0001590:CDS | 40.0% | |
| AGACTGAATACCGAAGAGAA+TGG | + | chr1_1:3257542-3257561 | Msa0001590:CDS | 40.0% | |
| TGCTTGTACACCATTCTCTT+CGG | - | chr1_1:3257555-3257574 | None:intergenic | 40.0% | |
| AAGAGAATGGTGTACAAGCA+AGG | + | chr1_1:3257555-3257574 | Msa0001590:CDS | 40.0% | |
| AGAGAATGGTGTACAAGCAA+GGG | + | chr1_1:3257556-3257575 | Msa0001590:CDS | 40.0% | |
| TCTTGCAAAAAGGAAGCAAG+TGG | - | chr1_1:3257590-3257609 | None:intergenic | 40.0% | |
| !! | TGCTTTGAGGCTTCTTAACA+TGG | + | chr1_1:3257627-3257646 | Msa0001590:CDS | 40.0% |
| ! | TCTGTTGGACAGTCTGTTTT+GGG | + | chr1_1:3258024-3258043 | Msa0001590:intron | 40.0% |
| !! | TTGGGTTGGTATGGATCTGT+TGG | + | chr1_1:3252417-3252436 | Msa0001590:five_prime_UTR | 45.0% |
| !!! | TTGGTGGTGGTGCTTTGTTT+TGG | + | chr1_1:3252622-3252641 | Msa0001590:CDS | 45.0% |
| !!! | TGGTGGTGGTGCTTTGTTTT+GGG | + | chr1_1:3252623-3252642 | Msa0001590:CDS | 45.0% |
| TGCAAGGAATAGGCTTCCTT+TGG | + | chr1_1:3252753-3252772 | Msa0001590:CDS | 45.0% | |
| !! | GGCTTCCTTTGGAATTGGTT+TGG | + | chr1_1:3252764-3252783 | Msa0001590:CDS | 45.0% |
| GCATCCCAAACCAATTCCAA+AGG | - | chr1_1:3252772-3252791 | None:intergenic | 45.0% | |
| GGTAACATCAACGCACTACT+AGG | - | chr1_1:3253029-3253048 | None:intergenic | 45.0% | |
| CATCAACACATCCTCGAAGA+AGG | - | chr1_1:3253156-3253175 | None:intergenic | 45.0% | |
| GCATTGTCGAGAATAGTGAG+TGG | + | chr1_1:3253186-3253205 | Msa0001590:intron | 45.0% | |
| AGAGCTTAGGTGTGTGTCTA+TGG | + | chr1_1:3253362-3253381 | Msa0001590:intron | 45.0% | |
| ! | ATTTTCGTTCATCCTAGGCC+AGG | + | chr1_1:3253853-3253872 | Msa0001590:CDS | 45.0% |
| ! | TTTTCGTTCATCCTAGGCCA+GGG | + | chr1_1:3253854-3253873 | Msa0001590:CDS | 45.0% |
| TTTATCCCACTAAGTGGGGT+CGG | - | chr1_1:3254174-3254193 | None:intergenic | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr1_1:3254180-3254199 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr1_1:3254177-3254196 | Msa0001590:intron | 45.0% | |
| GCACACTTCAATCCAAGGAA+AGG | - | chr1_1:3254489-3254508 | None:intergenic | 45.0% | |
| TTGGAGCACACTTCAATCCA+AGG | - | chr1_1:3254494-3254513 | None:intergenic | 45.0% | |
| ! | GTTTTCCTCTCAGATAGGTG+AGG | + | chr1_1:3254875-3254894 | Msa0001590:intron | 45.0% |
| TATACCCTCACCTATCTGAG+AGG | - | chr1_1:3254883-3254902 | None:intergenic | 45.0% | |
| GACTCTTCATGGTTTCGTTC+AGG | + | chr1_1:3254960-3254979 | Msa0001590:intron | 45.0% | |
| CTTCATGGTTTCGTTCAGGA+AGG | + | chr1_1:3254964-3254983 | Msa0001590:intron | 45.0% | |
| GGGGCAAACTATTAGTGGTT+TGG | - | chr1_1:3255031-3255050 | None:intergenic | 45.0% | |
| ACCTACACATCAGCTTGGTT+CGG | - | chr1_1:3255057-3255076 | None:intergenic | 45.0% | |
| ACTGAACCTACACATCAGCT+TGG | - | chr1_1:3255062-3255081 | None:intergenic | 45.0% | |
| GATGTGTAGGTTCAGTGTAC+CGG | + | chr1_1:3255066-3255085 | Msa0001590:intron | 45.0% | |
| ! | GAAATGTGCTAGAGAGCGTA+AGG | - | chr1_1:3255484-3255503 | None:intergenic | 45.0% |
| TACAGCTTCGCTGACACAAA+AGG | + | chr1_1:3255754-3255773 | Msa0001590:intron | 45.0% | |
| ! | GCTTGTCTCTTTTATGCCGA+CGG | + | chr1_1:3256254-3256273 | Msa0001590:intron | 45.0% |
| TAGAATGAGACTATCGCCGT+CGG | - | chr1_1:3256273-3256292 | None:intergenic | 45.0% | |
| ! | AAAAGCCGCTACCCGAATTT+TGG | + | chr1_1:3256314-3256333 | Msa0001590:CDS | 45.0% |
| GATCAGTGACACATACTGCA+TGG | + | chr1_1:3256897-3256916 | Msa0001590:CDS | 45.0% | |
| GGGTTATCATACTAGGAAGC+TGG | + | chr1_1:3257086-3257105 | Msa0001590:intron | 45.0% | |
| GCAAAAAGGAAGCAAGTGGA+CGG | - | chr1_1:3257586-3257605 | None:intergenic | 45.0% | |
| !! | TTACTAGGACTGCTGCTTTG+AGG | + | chr1_1:3257614-3257633 | Msa0001590:CDS | 45.0% |
| ! | CTCTGTTGGACAGTCTGTTT+TGG | + | chr1_1:3258023-3258042 | Msa0001590:intron | 45.0% |
| TTCAACACAAACCCTGGCCT+AGG | - | chr1_1:3253868-3253887 | None:intergenic | 50.0% | |
| GCCAGGGTTTGTGTTGAATG+AGG | + | chr1_1:3253870-3253889 | Msa0001590:CDS | 50.0% | |
| GCCTCATTCAACACAAACCC+TGG | - | chr1_1:3253874-3253893 | None:intergenic | 50.0% | |
| GGGTGAAGCAAGCATGATAG+AGG | + | chr1_1:3254799-3254818 | Msa0001590:CDS | 50.0% | |
| GGTTCGGGGCAAACTATTAG+TGG | - | chr1_1:3255036-3255055 | None:intergenic | 50.0% | |
| !! | ACATCAGCTTGGTTCGGTTC+GGG | - | chr1_1:3255051-3255070 | None:intergenic | 50.0% |
| !! | CACATCAGCTTGGTTCGGTT+CGG | - | chr1_1:3255052-3255071 | None:intergenic | 50.0% |
| ACCGAACCAAGCTGATGTGT+AGG | + | chr1_1:3255053-3255072 | Msa0001590:intron | 50.0% | |
| !! | GGTTCAGTGTACCGGTTATG+TGG | + | chr1_1:3255074-3255093 | Msa0001590:intron | 50.0% |
| AGCTTCGCTGACACAAAAGG+AGG | + | chr1_1:3255757-3255776 | Msa0001590:intron | 50.0% | |
| ATCGTCCTCCACTACAACCT+TGG | - | chr1_1:3255989-3256008 | None:intergenic | 50.0% | |
| TCCCTCCAAAATTCGGGTAG+CGG | - | chr1_1:3256322-3256341 | None:intergenic | 50.0% | |
| AAGTCACTGGATGCCATCCA+CGG | - | chr1_1:3256952-3256971 | None:intergenic | 50.0% | |
| ACTCTGCTTGTATCAGCCAC+TGG | - | chr1_1:3258082-3258101 | None:intergenic | 50.0% | |
| CCTCGAAGAAGGGATGCTAG+AGG | - | chr1_1:3253145-3253164 | None:intergenic | 55.0% | |
| CCTCTAGCATCCCTTCTTCG+AGG | + | chr1_1:3253142-3253161 | Msa0001590:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_1:3254166-3254185 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_1:3254165-3254184 | Msa0001590:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_1:3254166-3254185 | Msa0001590:intron | 55.0% | |
| !! | CATCAGCTTGGTTCGGTTCG+GGG | - | chr1_1:3255050-3255069 | None:intergenic | 55.0% |
| ! | AGCCGCTACCCGAATTTTGG+AGG | + | chr1_1:3256317-3256336 | Msa0001590:CDS | 55.0% |
| ! | GCCGCTACCCGAATTTTGGA+GGG | + | chr1_1:3256318-3256337 | Msa0001590:CDS | 55.0% |
| TCAGCAGGCTGCGCAAAGAA+AGG | - | chr1_1:3256567-3256586 | None:intergenic | 55.0% | |
| TGGATCTTGGACGTGTCAGC+AGG | - | chr1_1:3256582-3256601 | None:intergenic | 55.0% | |
| !! | GCGCTCACGATCTCTGGAGT+TGG | - | chr1_1:3256930-3256949 | None:intergenic | 60.0% |
| !! | TGCAGTGGGCTGTGCTGACC+AGG | + | chr1_1:3255956-3255975 | Msa0001590:intron | 65.0% |
| ! | TCCAGAGATCGTGAGCGCCG+TGG | + | chr1_1:3256932-3256951 | Msa0001590:CDS | 65.0% |
| TCCACGGCGCTCACGATCTC+TGG | - | chr1_1:3256936-3256955 | None:intergenic | 65.0% | |
| ! | GAGATCGTGAGCGCCGTGGA+TGG | + | chr1_1:3256936-3256955 | Msa0001590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3251982 | 3258398 | 3251982 | ID=Msa0001590;Name=Msa0001590 |
| chr1_1 | mRNA | 3251982 | 3258398 | 3251982 | ID=Msa0001590-mRNA-1;Parent=Msa0001590;Name=Msa0001590-mRNA-1;_AED=0.17;_eAED=0.17;_QI=392|1|1|1|0.72|0.75|12|339|363 |
| chr1_1 | exon | 3251982 | 3252065 | 3251982 | ID=Msa0001590-mRNA-1:exon:863;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3252260 | 3252801 | 3252260 | ID=Msa0001590-mRNA-1:exon:864;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3253832 | 3253945 | 3253832 | ID=Msa0001590-mRNA-1:exon:865;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3254791 | 3254891 | 3254791 | ID=Msa0001590-mRNA-1:exon:866;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3255388 | 3255459 | 3255388 | ID=Msa0001590-mRNA-1:exon:867;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3255759 | 3255840 | 3255759 | ID=Msa0001590-mRNA-1:exon:868;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3255961 | 3256041 | 3255961 | ID=Msa0001590-mRNA-1:exon:869;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3256313 | 3256351 | 3256313 | ID=Msa0001590-mRNA-1:exon:870;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3256579 | 3256644 | 3256579 | ID=Msa0001590-mRNA-1:exon:871;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3256866 | 3257015 | 3256866 | ID=Msa0001590-mRNA-1:exon:872;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3257520 | 3257648 | 3257520 | ID=Msa0001590-mRNA-1:exon:873;Parent=Msa0001590-mRNA-1 |
| chr1_1 | exon | 3258036 | 3258398 | 3258036 | ID=Msa0001590-mRNA-1:exon:874;Parent=Msa0001590-mRNA-1 |
| chr1_1 | five_prime_UTR | 3251982 | 3252065 | 3251982 | ID=Msa0001590-mRNA-1:five_prime_utr;Parent=Msa0001590-mRNA-1 |
| chr1_1 | five_prime_UTR | 3252260 | 3252567 | 3252260 | ID=Msa0001590-mRNA-1:five_prime_utr;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3252568 | 3252801 | 3252568 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3253832 | 3253945 | 3253832 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3254791 | 3254891 | 3254791 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3255388 | 3255459 | 3255388 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3255759 | 3255840 | 3255759 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3255961 | 3256041 | 3255961 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3256313 | 3256351 | 3256313 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3256579 | 3256644 | 3256579 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3256866 | 3257015 | 3256866 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3257520 | 3257648 | 3257520 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | CDS | 3258036 | 3258059 | 3258036 | ID=Msa0001590-mRNA-1:cds;Parent=Msa0001590-mRNA-1 |
| chr1_1 | three_prime_UTR | 3258060 | 3258398 | 3258060 | ID=Msa0001590-mRNA-1:three_prime_utr;Parent=Msa0001590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
