Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297740 | XP_013464923.1 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 5.16e-71 | 217 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297740 | sp|Q9FK81|Y5258_ARATH | 65.657 | 99 | 34 | 0 | 7 | 105 | 6 | 104 | 5.42e-41 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297740 | B7FMZ0 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 2.46e-71 | 217 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001590 | Msa0297740 | 0.804818 | 1.799513e-49 | -8.615850e-47 |
Msa0001780 | Msa0297740 | 0.826948 | 2.049581e-54 | -8.615850e-47 |
Msa0003700 | Msa0297740 | 0.816849 | 4.474237e-52 | -8.615850e-47 |
Msa0008110 | Msa0297740 | 0.800903 | 1.158701e-48 | -8.615850e-47 |
Msa0017510 | Msa0297740 | 0.851830 | 6.874937e-61 | -8.615850e-47 |
Msa0028420 | Msa0297740 | 0.803246 | 3.819576e-49 | -8.615850e-47 |
Msa0031340 | Msa0297740 | 0.819378 | 1.198871e-52 | -8.615850e-47 |
Msa0034270 | Msa0297740 | 0.828657 | 7.961269e-55 | -8.615850e-47 |
Msa0036830 | Msa0297740 | 0.825545 | 4.422972e-54 | -8.615850e-47 |
Msa0040450 | Msa0297740 | 0.813856 | 2.071295e-51 | -8.615850e-47 |
Msa0046100 | Msa0297740 | 0.825317 | 5.006728e-54 | -8.615850e-47 |
Msa0047030 | Msa0297740 | 0.806660 | 7.386517e-50 | -8.615850e-47 |
Msa0063890 | Msa0297740 | 0.808864 | 2.512119e-50 | -8.615850e-47 |
Msa0078650 | Msa0297740 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
Msa0089630 | Msa0297740 | 0.829210 | 5.845770e-55 | -8.615850e-47 |
Msa0092790 | Msa0297740 | 0.803809 | 2.919331e-49 | -8.615850e-47 |
Msa0093400 | Msa0297740 | 0.804692 | 1.911856e-49 | -8.615850e-47 |
Msa0094120 | Msa0297740 | 0.815430 | 9.284284e-52 | -8.615850e-47 |
Msa0094850 | Msa0297740 | 0.802758 | 4.818358e-49 | -8.615850e-47 |
Msa0101440 | Msa0297740 | 0.812856 | 3.434509e-51 | -8.615850e-47 |
Msa0110970 | Msa0297740 | 0.852697 | 3.893806e-61 | -8.615850e-47 |
Msa0115160 | Msa0297740 | 0.802656 | 5.058772e-49 | -8.615850e-47 |
Msa0118570 | Msa0297740 | 0.810399 | 1.175149e-50 | -8.615850e-47 |
Msa0124060 | Msa0297740 | 0.804900 | 1.730327e-49 | -8.615850e-47 |
Msa0131900 | Msa0297740 | 0.810261 | 1.258814e-50 | -8.615850e-47 |
Msa0146260 | Msa0297740 | 0.806521 | 7.900970e-50 | -8.615850e-47 |
Msa0157290 | Msa0297740 | 0.852380 | 4.796497e-61 | -8.615850e-47 |
Msa0159930 | Msa0297740 | 0.818029 | 2.425932e-52 | -8.615850e-47 |
Msa0168500 | Msa0297740 | 0.822198 | 2.692586e-53 | -8.615850e-47 |
Msa0171290 | Msa0297740 | 0.843676 | 1.210138e-58 | -8.615850e-47 |
Msa0173660 | Msa0297740 | 0.803659 | 3.137452e-49 | -8.615850e-47 |
Msa0189290 | Msa0297740 | 0.815813 | 7.627076e-52 | -8.615850e-47 |
Msa0197930 | Msa0297740 | 0.814551 | 1.454385e-51 | -8.615850e-47 |
Msa0203030 | Msa0297740 | 0.821507 | 3.891576e-53 | -8.615850e-47 |
Msa0205840 | Msa0297740 | 0.812778 | 3.573111e-51 | -8.615850e-47 |
Msa0211150 | Msa0297740 | 0.801758 | 7.742342e-49 | -8.615850e-47 |
Msa0218780 | Msa0297740 | 0.826318 | 2.896899e-54 | -8.615850e-47 |
Msa0219190 | Msa0297740 | 0.806119 | 9.604463e-50 | -8.615850e-47 |
Msa0220580 | Msa0297740 | 0.818080 | 2.361908e-52 | -8.615850e-47 |
Msa0221290 | Msa0297740 | 0.834378 | 3.102654e-56 | -8.615850e-47 |
Msa0225320 | Msa0297740 | 0.821700 | 3.512330e-53 | -8.615850e-47 |
Msa0225740 | Msa0297740 | 0.820301 | 7.372486e-53 | -8.615850e-47 |
Msa0231650 | Msa0297740 | 0.835202 | 1.924442e-56 | -8.615850e-47 |
Msa0239570 | Msa0297740 | 0.832011 | 1.205717e-55 | -8.615850e-47 |
Msa0240110 | Msa0297740 | 0.816432 | 5.548170e-52 | -8.615850e-47 |
Msa0240150 | Msa0297740 | 0.816110 | 6.545851e-52 | -8.615850e-47 |
Msa0243100 | Msa0297740 | 0.823422 | 1.397262e-53 | -8.615850e-47 |
Msa0248970 | Msa0297740 | 0.827668 | 1.377728e-54 | -8.615850e-47 |
Msa0258330 | Msa0297740 | 0.928856 | 1.596485e-92 | -8.615850e-47 |
Msa0261340 | Msa0297740 | 0.800408 | 1.461678e-48 | -8.615850e-47 |
Msa0287650 | Msa0297740 | 0.821226 | 4.518704e-53 | -8.615850e-47 |
Msa0292330 | Msa0297740 | 0.814526 | 1.473038e-51 | -8.615850e-47 |
Msa0292400 | Msa0297740 | 0.829348 | 5.412816e-55 | -8.615850e-47 |
Msa0295070 | Msa0297740 | 0.821165 | 4.667927e-53 | -8.615850e-47 |
Msa0297740 | Msa0298240 | 0.807088 | 5.996163e-50 | -8.615850e-47 |
Msa0297740 | Msa0306300 | 0.835345 | 1.771783e-56 | -8.615850e-47 |
Msa0297740 | Msa0317280 | 0.819123 | 1.370209e-52 | -8.615850e-47 |
Msa0297740 | Msa0329620 | 0.803836 | 2.882501e-49 | -8.615850e-47 |
Msa0297740 | Msa0335780 | 0.940786 | 1.283954e-100 | -8.615850e-47 |
Msa0297740 | Msa0340090 | 0.818672 | 1.734507e-52 | -8.615850e-47 |
Msa0297740 | Msa0341910 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
Msa0297740 | Msa0345330 | 0.805444 | 1.331150e-49 | -8.615850e-47 |
Msa0297740 | Msa0345410 | 0.801843 | 7.437071e-49 | -8.615850e-47 |
Msa0297740 | Msa0363070 | 0.800028 | 1.746567e-48 | -8.615850e-47 |
Msa0297740 | Msa0363200 | 0.804821 | 1.796673e-49 | -8.615850e-47 |
Msa0297740 | Msa0366240 | 0.807460 | 5.001119e-50 | -8.615850e-47 |
Msa0297740 | Msa0370380 | 0.807680 | 4.491492e-50 | -8.615850e-47 |
Msa0297740 | Msa0387510 | 0.818457 | 1.940321e-52 | -8.615850e-47 |
Msa0297740 | Msa0392420 | 0.829828 | 4.137072e-55 | -8.615850e-47 |
Msa0297740 | Msa0392460 | 0.825713 | 4.034190e-54 | -8.615850e-47 |
Msa0297740 | Msa0392490 | 0.808809 | 2.580086e-50 | -8.615850e-47 |
Msa0297740 | Msa0410500 | 0.802869 | 4.572426e-49 | -8.615850e-47 |
Msa0297740 | Msa0410650 | 0.825556 | 4.394368e-54 | -8.615850e-47 |
Msa0297740 | Msa0417270 | 0.801697 | 7.966742e-49 | -8.615850e-47 |
Msa0297740 | Msa0417880 | 0.817157 | 3.814255e-52 | -8.615850e-47 |
Msa0297740 | Msa0419820 | 0.801444 | 8.980057e-49 | -8.615850e-47 |
Msa0297740 | Msa0436050 | 0.810107 | 1.358842e-50 | -8.615850e-47 |
Msa0297740 | Msa0440750 | 0.802251 | 6.129071e-49 | -8.615850e-47 |
Msa0297740 | Msa0450720 | 0.802324 | 5.921395e-49 | -8.615850e-47 |
Msa0297740 | Msa0461720 | 0.820037 | 8.474394e-53 | -8.615850e-47 |
Msa0297740 | Msa0464380 | 0.813890 | 2.035487e-51 | -8.615850e-47 |
Msa0297740 | Msa0467430 | 0.801480 | 8.828189e-49 | -8.615850e-47 |
Msa0297740 | Msa0469030 | 0.810957 | 8.899770e-51 | -8.615850e-47 |
Msa0297740 | Msa0479170 | 0.823009 | 1.744821e-53 | -8.615850e-47 |
Msa0297740 | Msa0487420 | 0.800336 | 1.511531e-48 | -8.615850e-47 |
Msa0297740 | Msa0487570 | 0.829710 | 4.421542e-55 | -8.615850e-47 |
Msa0297740 | Msa0487630 | 0.819363 | 1.208059e-52 | -8.615850e-47 |
Msa0297740 | Msa0498060 | 0.803079 | 4.136569e-49 | -8.615850e-47 |
Msa0297740 | Msa0503580 | 0.846507 | 2.079412e-59 | -8.615850e-47 |
Msa0297740 | Msa0507680 | 0.837317 | 5.581613e-57 | -8.615850e-47 |
Msa0297740 | Msa0510980 | 0.818545 | 1.853866e-52 | -8.615850e-47 |
Msa0297740 | Msa0524190 | 0.818290 | 2.117410e-52 | -8.615850e-47 |
Msa0297740 | Msa0535040 | 0.832722 | 8.037751e-56 | -8.615850e-47 |
Msa0297740 | Msa0566310 | 0.811855 | 5.682319e-51 | -8.615850e-47 |
Msa0297740 | Msa0571140 | 0.810325 | 1.219378e-50 | -8.615850e-47 |
Msa0297740 | Msa0574890 | 0.803529 | 3.337205e-49 | -8.615850e-47 |
Msa0297740 | Msa0602240 | 0.815825 | 7.580720e-52 | -8.615850e-47 |
Msa0297740 | Msa0602250 | 0.817524 | 3.153324e-52 | -8.615850e-47 |
Msa0297740 | Msa0616220 | 0.804970 | 1.672567e-49 | -8.615850e-47 |
Msa0297740 | Msa0621010 | 0.816956 | 4.231455e-52 | -8.615850e-47 |
Msa0297740 | Msa0626450 | 0.828737 | 7.614407e-55 | -8.615850e-47 |
Msa0297740 | Msa0626490 | 0.831000 | 2.139124e-55 | -8.615850e-47 |
Msa0297740 | Msa0664600 | 0.824350 | 8.466277e-54 | -8.615850e-47 |
Msa0297740 | Msa0682330 | 0.801258 | 9.801949e-49 | -8.615850e-47 |
Msa0297740 | Msa0682620 | 0.812917 | 3.331248e-51 | -8.615850e-47 |
Msa0297740 | Msa0683570 | 0.831389 | 1.716638e-55 | -8.615850e-47 |
Msa0297740 | Msa0688770 | 0.817186 | 3.758231e-52 | -8.615850e-47 |
Msa0297740 | Msa0689520 | 0.814390 | 1.578691e-51 | -8.615850e-47 |
Msa0297740 | Msa0705870 | 0.824817 | 6.572753e-54 | -8.615850e-47 |
Msa0297740 | Msa0708520 | 0.818006 | 2.454997e-52 | -8.615850e-47 |
Msa0297740 | Msa0710800 | 0.832975 | 6.956186e-56 | -8.615850e-47 |
Msa0297740 | Msa0730430 | 0.807324 | 5.344131e-50 | -8.615850e-47 |
Msa0297740 | Msa0738040 | 0.805970 | 1.032076e-49 | -8.615850e-47 |
Msa0297740 | Msa0744000 | 0.822029 | 2.947835e-53 | -8.615850e-47 |
Msa0297740 | Msa0767300 | 0.822477 | 2.319859e-53 | -8.615850e-47 |
Msa0297740 | Msa0770720 | 0.808808 | 2.581711e-50 | -8.615850e-47 |
Msa0297740 | Msa0785210 | 0.825846 | 3.750737e-54 | -8.615850e-47 |
Msa0297740 | Msa0824960 | 0.800751 | 1.244021e-48 | -8.615850e-47 |
Msa0297740 | Msa0828560 | 0.801347 | 9.397017e-49 | -8.615850e-47 |
Msa0297740 | Msa0841340 | 0.802812 | 4.697298e-49 | -8.615850e-47 |
Msa0297740 | Msa0844560 | 0.818596 | 1.805416e-52 | -8.615850e-47 |
Msa0297740 | Msa0864300 | 0.816231 | 6.151002e-52 | -8.615850e-47 |
Msa0297740 | Msa0866270 | 0.828971 | 6.681165e-55 | -8.615850e-47 |
Msa0297740 | Msa0880140 | 0.849425 | 3.260679e-60 | -8.615850e-47 |
Msa0297740 | Msa0896970 | 0.824524 | 7.705149e-54 | -8.615850e-47 |
Msa0297740 | Msa0909120 | 0.814587 | 1.428058e-51 | -8.615850e-47 |
Msa0297740 | Msa0909140 | 0.807074 | 6.036654e-50 | -8.615850e-47 |
Msa0297740 | Msa0936410 | 0.824429 | 8.112568e-54 | -8.615850e-47 |
Msa0297740 | Msa0972670 | 0.810054 | 1.394799e-50 | -8.615850e-47 |
Msa0297740 | Msa0973250 | 0.804272 | 2.339395e-49 | -8.615850e-47 |
Msa0297740 | Msa1005870 | 0.817348 | 3.454741e-52 | -8.615850e-47 |
Msa0297740 | Msa1007270 | 0.818492 | 1.906041e-52 | -8.615850e-47 |
Msa0297740 | Msa1020670 | 0.831631 | 1.496051e-55 | -8.615850e-47 |
Msa0297740 | Msa1037910 | 0.800431 | 1.446159e-48 | -8.615850e-47 |
Msa0297740 | Msa1065390 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
Msa0297740 | Msa1066490 | 0.814774 | 1.298329e-51 | -8.615850e-47 |
Msa0297740 | Msa1079590 | 0.807289 | 5.436944e-50 | -8.615850e-47 |
Msa0297740 | Msa1084960 | 0.802631 | 5.120149e-49 | -8.615850e-47 |
Msa0297740 | Msa1085200 | 0.826705 | 2.342778e-54 | -8.615850e-47 |
Msa0297740 | Msa1092010 | 0.820838 | 5.551533e-53 | -8.615850e-47 |
Msa0297740 | Msa1096970 | 0.823754 | 1.168120e-53 | -8.615850e-47 |
Msa0297740 | Msa1111090 | 0.802322 | 5.927579e-49 | -8.615850e-47 |
Msa0297740 | Msa1124110 | 0.807769 | 4.299604e-50 | -8.615850e-47 |
Msa0297740 | Msa1125000 | 0.806388 | 8.429691e-50 | -8.615850e-47 |
Msa0297740 | Msa1127890 | 0.808182 | 3.511145e-50 | -8.615850e-47 |
Msa0297740 | Msa1139810 | 0.804045 | 2.608234e-49 | -8.615850e-47 |
Msa0297740 | Msa1140210 | 0.851236 | 1.012307e-60 | -8.615850e-47 |
Msa0297740 | Msa1151910 | 0.831427 | 1.679955e-55 | -8.615850e-47 |
Msa0297740 | Msa1182860 | 0.803188 | 3.926819e-49 | -8.615850e-47 |
Msa0297740 | Msa1183120 | 0.801065 | 1.073537e-48 | -8.615850e-47 |
Msa0297740 | Msa1192090 | 0.801042 | 1.084902e-48 | -8.615850e-47 |
Msa0297740 | Msa1200020 | 0.835300 | 1.818657e-56 | -8.615850e-47 |
Msa0297740 | Msa1200440 | 0.811438 | 6.999798e-51 | -8.615850e-47 |
Msa0297740 | Msa1209460 | 0.839625 | 1.416818e-57 | -8.615850e-47 |
Msa0297740 | Msa1236100 | 0.808549 | 2.933097e-50 | -8.615850e-47 |
Msa0297740 | Msa1242220 | 0.827728 | 1.333043e-54 | -8.615850e-47 |
Msa0297740 | Msa1271990 | 0.826806 | 2.215971e-54 | -8.615850e-47 |
Msa0297740 | Msa1279380 | 0.847872 | 8.786672e-60 | -8.615850e-47 |
Msa0297740 | Msa1283860 | 0.831723 | 1.419975e-55 | -8.615850e-47 |
Msa0297740 | Msa1293770 | 0.818507 | 1.890879e-52 | -8.615850e-47 |
Msa0297740 | Msa1308380 | 0.807205 | 5.663727e-50 | -8.615850e-47 |
Msa0297740 | Msa1309790 | 0.813576 | 2.387325e-51 | -8.615850e-47 |
Msa0297740 | Msa1322890 | 0.809780 | 1.597280e-50 | -8.615850e-47 |
Msa0297740 | Msa1355800 | 0.801258 | 9.802899e-49 | -8.615850e-47 |
Msa0297740 | Msa1356140 | 0.805977 | 1.028886e-49 | -8.615850e-47 |
Msa0297740 | Msa1367370 | 0.817473 | 3.238893e-52 | -8.615850e-47 |
Msa0297740 | Msa1373330 | 0.806564 | 7.738288e-50 | -8.615850e-47 |
Msa0297740 | Msa1374040 | 0.806463 | 8.126458e-50 | -8.615850e-47 |
Msa0297740 | Msa1374550 | 0.818471 | 1.927061e-52 | -8.615850e-47 |
Msa0297740 | Msa1382540 | 0.823464 | 1.365523e-53 | -8.615850e-47 |
Msa0297740 | Msa1398340 | 0.815084 | 1.108045e-51 | -8.615850e-47 |
Msa0297740 | Msa1413690 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
Msa0297740 | Msa1419370 | 0.803830 | 2.891332e-49 | -8.615850e-47 |
Msa0297740 | Msa1420060 | 0.805809 | 1.115958e-49 | -8.615850e-47 |
Msa0297740 | Msa1421550 | 0.802392 | 5.733856e-49 | -8.615850e-47 |
Msa0297740 | Msa1430240 | 0.803120 | 4.056670e-49 | -8.615850e-47 |
Msa0297740 | Msa1435890 | 0.825302 | 5.048117e-54 | -8.615850e-47 |
Msa0297740 | Msa1438250 | 0.804200 | 2.421152e-49 | -8.615850e-47 |
Msa0297740 | Msa1440960 | 0.814758 | 1.308892e-51 | -8.615850e-47 |
Msa0297740 | Msa1443110 | 0.819160 | 1.343517e-52 | -8.615850e-47 |
Msa0297740 | Msa1457910 | 0.832673 | 8.264177e-56 | -8.615850e-47 |
Msa0297740 | Msa1464810 | 0.830851 | 2.326452e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297740 | MtrunA17_Chr2g0321051 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 4.75e-75 | 217 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297740 | AT5G22580.1 | 65.657 | 99 | 34 | 0 | 7 | 105 | 6 | 104 | 5.51e-42 | 134 |
Msa0297740 | AT3G17210.1 | 42.000 | 100 | 54 | 2 | 8 | 104 | 9 | 107 | 3.51e-22 | 84.0 |
Msa0297740 | AT3G17210.2 | 42.000 | 100 | 54 | 2 | 8 | 104 | 9 | 107 | 3.51e-22 | 84.0 |
Find 45 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATATATAAGCACAATTT+AGG | 0.149609 | 2_3:+51562858 | None:intergenic |
GATTATGCTGCTTCCTTAAC+TGG | 0.195704 | 2_3:+51561860 | None:intergenic |
CTAAATTGTGCTTATATATT+AGG | 0.202013 | 2_3:-51562857 | Msa0297740:five_prime_UTR |
CTGTTAAATTATAGTAAAAT+TGG | 0.209409 | 2_3:-51561520 | Msa0297740:three_prime_UTR |
AGAAGTTACATAATTGATTA+TGG | 0.298058 | 2_3:-51562958 | Msa0297740:five_prime_UTR |
TACAAAAGGGATGGAGAAAT+TGG | 0.322091 | 2_3:-51562733 | Msa0297740:CDS |
AATCATATCCATTGATTAGA+AGG | 0.325835 | 2_3:+51561658 | None:intergenic |
AATAATGAATTATTTATTGT+TGG | 0.369546 | 2_3:+51561819 | None:intergenic |
TAATATATAAGCACAATTTA+GGG | 0.373646 | 2_3:+51562859 | None:intergenic |
AAGCTTTACTTCACAAAGAA+TGG | 0.408647 | 2_3:-51562823 | Msa0297740:exon |
ATTTGTATGGTAAAAGATAA+GGG | 0.415631 | 2_3:-51561685 | Msa0297740:three_prime_UTR |
AGGGTTTGCCTTCTAATCAA+TGG | 0.422168 | 2_3:-51561666 | Msa0297740:three_prime_UTR |
ATCTTGTCAAATCCTTTGAA+TGG | 0.422994 | 2_3:-51562698 | Msa0297740:intron |
AACTGGCTTGACAAGGGTTG+AGG | 0.423667 | 2_3:+51561877 | None:intergenic |
AACCCTTGTCAAGCCAGTTA+AGG | 0.431460 | 2_3:-51561873 | Msa0297740:CDS |
CTTCCTTAACTGGCTTGACA+AGG | 0.454173 | 2_3:+51561870 | None:intergenic |
CTTGTTGAATGTCATCAAGA+AGG | 0.457412 | 2_3:+51561997 | None:intergenic |
GTGATTGTTAAGTTCAAAGA+AGG | 0.458164 | 2_3:-51562774 | Msa0297740:CDS |
GTGAAGTAAAGCTTGCTACT+AGG | 0.467741 | 2_3:+51562832 | None:intergenic |
TATTTGTATGGTAAAAGATA+AGG | 0.471222 | 2_3:-51561686 | Msa0297740:three_prime_UTR |
GTAGTGGAAGAGCTTACAAA+AGG | 0.480357 | 2_3:-51562747 | Msa0297740:CDS |
GTTCAAAGAAGGTGTAGTAG+TGG | 0.481023 | 2_3:-51562763 | Msa0297740:CDS |
GACTCATTTCATTACTATGT+TGG | 0.483365 | 2_3:+51562935 | None:intergenic |
TCAGAGAACTCAACATGACT+TGG | 0.494285 | 2_3:+51561944 | None:intergenic |
ACTGGCTTGACAAGGGTTGA+GGG | 0.505995 | 2_3:+51561878 | None:intergenic |
AACCTTGTCTCAACACATCT+AGG | 0.520013 | 2_3:+51562029 | None:intergenic |
AAGCACAATTTAGGGTTCAA+AGG | 0.525734 | 2_3:+51562867 | None:intergenic |
ATAGTAATGAAATGAGTCGT+GGG | 0.527643 | 2_3:-51562930 | Msa0297740:five_prime_UTR |
TCTGTACTGTGATATTTGTA+TGG | 0.531843 | 2_3:-51561698 | Msa0297740:three_prime_UTR |
TTTCTAATCATACAGGGGAC+AGG | 0.545053 | 2_3:-51562062 | Msa0297740:intron |
TATTAGACGTTGACACATGT+TGG | 0.550823 | 2_3:-51563010 | Msa0297740:five_prime_UTR |
ATTGACAGATCAAGACAGTA+AGG | 0.554102 | 2_3:-51562898 | Msa0297740:five_prime_UTR |
AGAACTCAACATGACTTGGA+TGG | 0.554383 | 2_3:+51561948 | None:intergenic |
TTCACAAAGAATGGTAGTCA+TGG | 0.559784 | 2_3:-51562814 | Msa0297740:exon |
TTCCTTAACTGGCTTGACAA+GGG | 0.564730 | 2_3:+51561871 | None:intergenic |
AGCCTAGATGTGTTGAGACA+AGG | 0.579475 | 2_3:-51562031 | Msa0297740:CDS |
CTGGCTTGACAAGGGTTGAG+GGG | 0.581401 | 2_3:+51561879 | None:intergenic |
TAGTGGAAGAGCTTACAAAA+GGG | 0.588758 | 2_3:-51562746 | Msa0297740:CDS |
GGAAGAGCTTACAAAAGGGA+TGG | 0.589362 | 2_3:-51562742 | Msa0297740:CDS |
CGTTGACACATGTTGGACAA+TGG | 0.595140 | 2_3:-51563003 | Msa0297740:five_prime_UTR |
ATTACTGAACTACGAACAGA+AGG | 0.603446 | 2_3:+51561750 | None:intergenic |
CATAGTAATGAAATGAGTCG+TGG | 0.608824 | 2_3:-51562931 | Msa0297740:five_prime_UTR |
GTATAAGACATACCATTCAA+AGG | 0.611465 | 2_3:+51562686 | None:intergenic |
ACAAAGAATGGTAGTCATGG+AGG | 0.636423 | 2_3:-51562811 | Msa0297740:exon |
TAGTAATGAAATGAGTCGTG+GGG | 0.683523 | 2_3:-51562929 | Msa0297740:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATACAATTATTTATATTGA+CGG | + | chr2_3:51562280-51562299 | None:intergenic | 10.0% |
!! | AATAATGAATTATTTATTGT+TGG | + | chr2_3:51562706-51562725 | None:intergenic | 10.0% |
!! | TATACAATTATTTATATTGA+CGG | + | chr2_3:51562280-51562299 | None:intergenic | 10.0% |
!! | AATAATGAATTATTTATTGT+TGG | + | chr2_3:51562706-51562725 | None:intergenic | 10.0% |
!! | TAATATATAAGCACAATTTA+GGG | + | chr2_3:51561666-51561685 | None:intergenic | 15.0% |
!!! | ACATAAAAAAATTTGATTTC+AGG | - | chr2_3:51562189-51562208 | Msa0297740:intron | 15.0% |
!! | AATTACTAGTTATAAGTAAT+CGG | - | chr2_3:51562342-51562361 | Msa0297740:intron | 15.0% |
!! | CTGTTAAATTATAGTAAAAT+TGG | - | chr2_3:51563002-51563021 | Msa0297740:five_prime_UTR | 15.0% |
!! | TAATATATAAGCACAATTTA+GGG | + | chr2_3:51561666-51561685 | None:intergenic | 15.0% |
!!! | ACATAAAAAAATTTGATTTC+AGG | - | chr2_3:51562189-51562208 | Msa0297740:intron | 15.0% |
!! | AATTACTAGTTATAAGTAAT+CGG | - | chr2_3:51562342-51562361 | Msa0297740:intron | 15.0% |
!! | CTGTTAAATTATAGTAAAAT+TGG | - | chr2_3:51563002-51563021 | Msa0297740:five_prime_UTR | 15.0% |
!! | AGAAGTTACATAATTGATTA+TGG | - | chr2_3:51561564-51561583 | Msa0297740:three_prime_UTR | 20.0% |
!! | CTAATATATAAGCACAATTT+AGG | + | chr2_3:51561667-51561686 | None:intergenic | 20.0% |
!! | CTAAATTGTGCTTATATATT+AGG | - | chr2_3:51561665-51561684 | Msa0297740:three_prime_UTR | 20.0% |
!! | TATAAATCTCAGTAAAATCA+TGG | + | chr2_3:51562128-51562147 | None:intergenic | 20.0% |
!! | ACTGAGATTTATAGTTAAAT+AGG | - | chr2_3:51562135-51562154 | Msa0297740:intron | 20.0% |
!! | ATATGATAGTACTATAAAGA+GGG | + | chr2_3:51562432-51562451 | None:intergenic | 20.0% |
!! | TATTTGTATGGTAAAAGATA+AGG | - | chr2_3:51562836-51562855 | Msa0297740:five_prime_UTR | 20.0% |
!! | ATTTGTATGGTAAAAGATAA+GGG | - | chr2_3:51562837-51562856 | Msa0297740:five_prime_UTR | 20.0% |
!! | AGAAGTTACATAATTGATTA+TGG | - | chr2_3:51561564-51561583 | Msa0297740:three_prime_UTR | 20.0% |
!! | CTAATATATAAGCACAATTT+AGG | + | chr2_3:51561667-51561686 | None:intergenic | 20.0% |
!! | CTAAATTGTGCTTATATATT+AGG | - | chr2_3:51561665-51561684 | Msa0297740:three_prime_UTR | 20.0% |
!! | TATAAATCTCAGTAAAATCA+TGG | + | chr2_3:51562128-51562147 | None:intergenic | 20.0% |
!! | ACTGAGATTTATAGTTAAAT+AGG | - | chr2_3:51562135-51562154 | Msa0297740:intron | 20.0% |
!! | ATATGATAGTACTATAAAGA+GGG | + | chr2_3:51562432-51562451 | None:intergenic | 20.0% |
!! | TATTTGTATGGTAAAAGATA+AGG | - | chr2_3:51562836-51562855 | Msa0297740:five_prime_UTR | 20.0% |
!! | ATTTGTATGGTAAAAGATAA+GGG | - | chr2_3:51562837-51562856 | Msa0297740:five_prime_UTR | 20.0% |
! | ATCAAAGGTTAATAAACTGA+AGG | + | chr2_3:51561936-51561955 | None:intergenic | 25.0% |
! | AAAAACACTATCTGTATCAA+AGG | + | chr2_3:51561951-51561970 | None:intergenic | 25.0% |
! | TCTGTTATCTAATATATCAG+TGG | + | chr2_3:51561985-51562004 | None:intergenic | 25.0% |
! | AAACAGAAATACAAGAACAA+GGG | - | chr2_3:51562004-51562023 | Msa0297740:CDS | 25.0% |
! | TCTCATGTACTTAAATATCA+AGG | - | chr2_3:51562059-51562078 | Msa0297740:intron | 25.0% |
!!! | AATATCAAGGTTTTAGATTG+AGG | - | chr2_3:51562072-51562091 | Msa0297740:intron | 25.0% |
!!! | ATTTTTTTATGTTTTCGCGT+TGG | + | chr2_3:51562181-51562200 | None:intergenic | 25.0% |
! | ATGTGACGATTATGATTATT+TGG | - | chr2_3:51562381-51562400 | Msa0297740:intron | 25.0% |
! | GATATGATAGTACTATAAAG+AGG | + | chr2_3:51562433-51562452 | None:intergenic | 25.0% |
! | ATAAAGCTTTCTAATCATAC+AGG | - | chr2_3:51562453-51562472 | Msa0297740:intron | 25.0% |
! | TAAAGCTTTCTAATCATACA+GGG | - | chr2_3:51562454-51562473 | Msa0297740:intron | 25.0% |
!! | AATCATATCCATTGATTAGA+AGG | + | chr2_3:51562867-51562886 | None:intergenic | 25.0% |
! | ATCAAAGGTTAATAAACTGA+AGG | + | chr2_3:51561936-51561955 | None:intergenic | 25.0% |
! | AAAAACACTATCTGTATCAA+AGG | + | chr2_3:51561951-51561970 | None:intergenic | 25.0% |
! | TCTGTTATCTAATATATCAG+TGG | + | chr2_3:51561985-51562004 | None:intergenic | 25.0% |
! | AAACAGAAATACAAGAACAA+GGG | - | chr2_3:51562004-51562023 | Msa0297740:CDS | 25.0% |
! | TCTCATGTACTTAAATATCA+AGG | - | chr2_3:51562059-51562078 | Msa0297740:intron | 25.0% |
!!! | AATATCAAGGTTTTAGATTG+AGG | - | chr2_3:51562072-51562091 | Msa0297740:intron | 25.0% |
!!! | ATTTTTTTATGTTTTCGCGT+TGG | + | chr2_3:51562181-51562200 | None:intergenic | 25.0% |
! | ATGTGACGATTATGATTATT+TGG | - | chr2_3:51562381-51562400 | Msa0297740:intron | 25.0% |
! | GATATGATAGTACTATAAAG+AGG | + | chr2_3:51562433-51562452 | None:intergenic | 25.0% |
! | ATAAAGCTTTCTAATCATAC+AGG | - | chr2_3:51562453-51562472 | Msa0297740:intron | 25.0% |
! | TAAAGCTTTCTAATCATACA+GGG | - | chr2_3:51562454-51562473 | Msa0297740:intron | 25.0% |
!! | AATCATATCCATTGATTAGA+AGG | + | chr2_3:51562867-51562886 | None:intergenic | 25.0% |
GACTCATTTCATTACTATGT+TGG | + | chr2_3:51561590-51561609 | None:intergenic | 30.0% | |
ATAGTAATGAAATGAGTCGT+GGG | - | chr2_3:51561592-51561611 | Msa0297740:three_prime_UTR | 30.0% | |
AAGCTTTACTTCACAAAGAA+TGG | - | chr2_3:51561699-51561718 | Msa0297740:three_prime_UTR | 30.0% | |
GTGATTGTTAAGTTCAAAGA+AGG | - | chr2_3:51561748-51561767 | Msa0297740:three_prime_UTR | 30.0% | |
ATCTTGTCAAATCCTTTGAA+TGG | - | chr2_3:51561824-51561843 | Msa0297740:three_prime_UTR | 30.0% | |
GTATAAGACATACCATTCAA+AGG | + | chr2_3:51561839-51561858 | None:intergenic | 30.0% | |
! | TACCTTTTATATTGTGCAAG+AGG | - | chr2_3:51561862-51561881 | Msa0297740:CDS | 30.0% |
GAAACAGAAATACAAGAACA+AGG | - | chr2_3:51562003-51562022 | Msa0297740:CDS | 30.0% | |
AAAGCTTTCTAATCATACAG+GGG | - | chr2_3:51562455-51562474 | Msa0297740:intron | 30.0% | |
TCTGTACTGTGATATTTGTA+TGG | - | chr2_3:51562824-51562843 | Msa0297740:exon | 30.0% | |
GACTCATTTCATTACTATGT+TGG | + | chr2_3:51561590-51561609 | None:intergenic | 30.0% | |
ATAGTAATGAAATGAGTCGT+GGG | - | chr2_3:51561592-51561611 | Msa0297740:three_prime_UTR | 30.0% | |
AAGCTTTACTTCACAAAGAA+TGG | - | chr2_3:51561699-51561718 | Msa0297740:three_prime_UTR | 30.0% | |
GTGATTGTTAAGTTCAAAGA+AGG | - | chr2_3:51561748-51561767 | Msa0297740:three_prime_UTR | 30.0% | |
ATCTTGTCAAATCCTTTGAA+TGG | - | chr2_3:51561824-51561843 | Msa0297740:three_prime_UTR | 30.0% | |
GTATAAGACATACCATTCAA+AGG | + | chr2_3:51561839-51561858 | None:intergenic | 30.0% | |
! | TACCTTTTATATTGTGCAAG+AGG | - | chr2_3:51561862-51561881 | Msa0297740:CDS | 30.0% |
GAAACAGAAATACAAGAACA+AGG | - | chr2_3:51562003-51562022 | Msa0297740:CDS | 30.0% | |
AAAGCTTTCTAATCATACAG+GGG | - | chr2_3:51562455-51562474 | Msa0297740:intron | 30.0% | |
TCTGTACTGTGATATTTGTA+TGG | - | chr2_3:51562824-51562843 | Msa0297740:exon | 30.0% | |
CATAGTAATGAAATGAGTCG+TGG | - | chr2_3:51561591-51561610 | Msa0297740:three_prime_UTR | 35.0% | |
TAGTAATGAAATGAGTCGTG+GGG | - | chr2_3:51561593-51561612 | Msa0297740:three_prime_UTR | 35.0% | |
ATTGACAGATCAAGACAGTA+AGG | - | chr2_3:51561624-51561643 | Msa0297740:three_prime_UTR | 35.0% | |
! | AAGCACAATTTAGGGTTCAA+AGG | + | chr2_3:51561658-51561677 | None:intergenic | 35.0% |
TTCACAAAGAATGGTAGTCA+TGG | - | chr2_3:51561708-51561727 | Msa0297740:three_prime_UTR | 35.0% | |
TAGTGGAAGAGCTTACAAAA+GGG | - | chr2_3:51561776-51561795 | Msa0297740:three_prime_UTR | 35.0% | |
TACAAAAGGGATGGAGAAAT+TGG | - | chr2_3:51561789-51561808 | Msa0297740:three_prime_UTR | 35.0% | |
AGCCTCTTGCACAATATAAA+AGG | + | chr2_3:51561867-51561886 | None:intergenic | 35.0% | |
TTGATTTCAGGCTTACATCA+CGG | - | chr2_3:51562201-51562220 | Msa0297740:intron | 35.0% | |
CTTGTTGAATGTCATCAAGA+AGG | + | chr2_3:51562528-51562547 | None:intergenic | 35.0% | |
ATTACTGAACTACGAACAGA+AGG | + | chr2_3:51562775-51562794 | None:intergenic | 35.0% | |
CATAGTAATGAAATGAGTCG+TGG | - | chr2_3:51561591-51561610 | Msa0297740:three_prime_UTR | 35.0% | |
TAGTAATGAAATGAGTCGTG+GGG | - | chr2_3:51561593-51561612 | Msa0297740:three_prime_UTR | 35.0% | |
ATTGACAGATCAAGACAGTA+AGG | - | chr2_3:51561624-51561643 | Msa0297740:three_prime_UTR | 35.0% | |
! | AAGCACAATTTAGGGTTCAA+AGG | + | chr2_3:51561658-51561677 | None:intergenic | 35.0% |
TTCACAAAGAATGGTAGTCA+TGG | - | chr2_3:51561708-51561727 | Msa0297740:three_prime_UTR | 35.0% | |
TAGTGGAAGAGCTTACAAAA+GGG | - | chr2_3:51561776-51561795 | Msa0297740:three_prime_UTR | 35.0% | |
TACAAAAGGGATGGAGAAAT+TGG | - | chr2_3:51561789-51561808 | Msa0297740:three_prime_UTR | 35.0% | |
AGCCTCTTGCACAATATAAA+AGG | + | chr2_3:51561867-51561886 | None:intergenic | 35.0% | |
TTGATTTCAGGCTTACATCA+CGG | - | chr2_3:51562201-51562220 | Msa0297740:intron | 35.0% | |
CTTGTTGAATGTCATCAAGA+AGG | + | chr2_3:51562528-51562547 | None:intergenic | 35.0% | |
ATTACTGAACTACGAACAGA+AGG | + | chr2_3:51562775-51562794 | None:intergenic | 35.0% | |
!! | GTGAAGTAAAGCTTGCTACT+AGG | + | chr2_3:51561693-51561712 | None:intergenic | 40.0% |
ACAAAGAATGGTAGTCATGG+AGG | - | chr2_3:51561711-51561730 | Msa0297740:three_prime_UTR | 40.0% | |
! | GTTCAAAGAAGGTGTAGTAG+TGG | - | chr2_3:51561759-51561778 | Msa0297740:three_prime_UTR | 40.0% |
! | GTAGTGGAAGAGCTTACAAA+AGG | - | chr2_3:51561775-51561794 | Msa0297740:three_prime_UTR | 40.0% |
AGTTAAATAGGCCTCGATTG+TGG | - | chr2_3:51562147-51562166 | Msa0297740:intron | 40.0% | |
!!! | ATGTTTTCGCGTTGGTAATG+TGG | + | chr2_3:51562173-51562192 | None:intergenic | 40.0% |
TTTCTAATCATACAGGGGAC+AGG | - | chr2_3:51562460-51562479 | Msa0297740:intron | 40.0% | |
AACCTTGTCTCAACACATCT+AGG | + | chr2_3:51562496-51562515 | None:intergenic | 40.0% | |
! | AGAACTCAACATGACTTGGA+TGG | + | chr2_3:51562577-51562596 | None:intergenic | 40.0% |
TCAGAGAACTCAACATGACT+TGG | + | chr2_3:51562581-51562600 | None:intergenic | 40.0% | |
!! | TTCCTTAACTGGCTTGACAA+GGG | + | chr2_3:51562654-51562673 | None:intergenic | 40.0% |
! | GATTATGCTGCTTCCTTAAC+TGG | + | chr2_3:51562665-51562684 | None:intergenic | 40.0% |
AGGGTTTGCCTTCTAATCAA+TGG | - | chr2_3:51562856-51562875 | Msa0297740:five_prime_UTR | 40.0% | |
!! | GTGAAGTAAAGCTTGCTACT+AGG | + | chr2_3:51561693-51561712 | None:intergenic | 40.0% |
ACAAAGAATGGTAGTCATGG+AGG | - | chr2_3:51561711-51561730 | Msa0297740:three_prime_UTR | 40.0% | |
! | GTTCAAAGAAGGTGTAGTAG+TGG | - | chr2_3:51561759-51561778 | Msa0297740:three_prime_UTR | 40.0% |
! | GTAGTGGAAGAGCTTACAAA+AGG | - | chr2_3:51561775-51561794 | Msa0297740:three_prime_UTR | 40.0% |
AGTTAAATAGGCCTCGATTG+TGG | - | chr2_3:51562147-51562166 | Msa0297740:intron | 40.0% | |
!!! | ATGTTTTCGCGTTGGTAATG+TGG | + | chr2_3:51562173-51562192 | None:intergenic | 40.0% |
TTTCTAATCATACAGGGGAC+AGG | - | chr2_3:51562460-51562479 | Msa0297740:intron | 40.0% | |
AACCTTGTCTCAACACATCT+AGG | + | chr2_3:51562496-51562515 | None:intergenic | 40.0% | |
! | AGAACTCAACATGACTTGGA+TGG | + | chr2_3:51562577-51562596 | None:intergenic | 40.0% |
TCAGAGAACTCAACATGACT+TGG | + | chr2_3:51562581-51562600 | None:intergenic | 40.0% | |
!! | TTCCTTAACTGGCTTGACAA+GGG | + | chr2_3:51562654-51562673 | None:intergenic | 40.0% |
! | GATTATGCTGCTTCCTTAAC+TGG | + | chr2_3:51562665-51562684 | None:intergenic | 40.0% |
AGGGTTTGCCTTCTAATCAA+TGG | - | chr2_3:51562856-51562875 | Msa0297740:five_prime_UTR | 40.0% | |
CGTTGACACATGTTGGACAA+TGG | - | chr2_3:51561519-51561538 | Msa0297740:three_prime_UTR | 45.0% | |
GGAAGAGCTTACAAAAGGGA+TGG | - | chr2_3:51561780-51561799 | Msa0297740:three_prime_UTR | 45.0% | |
AGCCTAGATGTGTTGAGACA+AGG | - | chr2_3:51562491-51562510 | Msa0297740:intron | 45.0% | |
AACCCTTGTCAAGCCAGTTA+AGG | - | chr2_3:51562649-51562668 | Msa0297740:intron | 45.0% | |
!! | CTTCCTTAACTGGCTTGACA+AGG | + | chr2_3:51562655-51562674 | None:intergenic | 45.0% |
CGTTGACACATGTTGGACAA+TGG | - | chr2_3:51561519-51561538 | Msa0297740:three_prime_UTR | 45.0% | |
GGAAGAGCTTACAAAAGGGA+TGG | - | chr2_3:51561780-51561799 | Msa0297740:three_prime_UTR | 45.0% | |
AGCCTAGATGTGTTGAGACA+AGG | - | chr2_3:51562491-51562510 | Msa0297740:intron | 45.0% | |
AACCCTTGTCAAGCCAGTTA+AGG | - | chr2_3:51562649-51562668 | Msa0297740:intron | 45.0% | |
!! | CTTCCTTAACTGGCTTGACA+AGG | + | chr2_3:51562655-51562674 | None:intergenic | 45.0% |
! | TGGTAATGTGGCCACAATCG+AGG | + | chr2_3:51562161-51562180 | None:intergenic | 50.0% |
!! | ACTGGCTTGACAAGGGTTGA+GGG | + | chr2_3:51562647-51562666 | None:intergenic | 50.0% |
!! | AACTGGCTTGACAAGGGTTG+AGG | + | chr2_3:51562648-51562667 | None:intergenic | 50.0% |
! | TGGTAATGTGGCCACAATCG+AGG | + | chr2_3:51562161-51562180 | None:intergenic | 50.0% |
!! | ACTGGCTTGACAAGGGTTGA+GGG | + | chr2_3:51562647-51562666 | None:intergenic | 50.0% |
!! | AACTGGCTTGACAAGGGTTG+AGG | + | chr2_3:51562648-51562667 | None:intergenic | 50.0% |
CGGTCGTAGACTCGTAGTTG+TGG | - | chr2_3:51562221-51562240 | Msa0297740:intron | 55.0% | |
! | CTGGCTTGACAAGGGTTGAG+GGG | + | chr2_3:51562646-51562665 | None:intergenic | 55.0% |
CGGTCGTAGACTCGTAGTTG+TGG | - | chr2_3:51562221-51562240 | Msa0297740:intron | 55.0% | |
! | CTGGCTTGACAAGGGTTGAG+GGG | + | chr2_3:51562646-51562665 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 51561514 | 51563030 | 51561514 | ID=Msa0297740;Name=Msa0297740 |
chr2_3 | mRNA | 51561514 | 51563030 | 51561514 | ID=Msa0297740-mRNA-1;Parent=Msa0297740;Name=Msa0297740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=204|1|1|1|1|1|2|348|111 |
chr2_3 | exon | 51561514 | 51562069 | 51561514 | ID=Msa0297740-mRNA-1:exon:16385;Parent=Msa0297740-mRNA-1 |
chr2_3 | exon | 51562699 | 51563030 | 51562699 | ID=Msa0297740-mRNA-1:exon:16384;Parent=Msa0297740-mRNA-1 |
chr2_3 | five_prime_UTR | 51562827 | 51563030 | 51562827 | ID=Msa0297740-mRNA-1:five_prime_utr;Parent=Msa0297740-mRNA-1 |
chr2_3 | CDS | 51562699 | 51562826 | 51562699 | ID=Msa0297740-mRNA-1:cds;Parent=Msa0297740-mRNA-1 |
chr2_3 | CDS | 51561862 | 51562069 | 51561862 | ID=Msa0297740-mRNA-1:cds;Parent=Msa0297740-mRNA-1 |
chr2_3 | three_prime_UTR | 51561514 | 51561861 | 51561514 | ID=Msa0297740-mRNA-1:three_prime_utr;Parent=Msa0297740-mRNA-1 |
Gene Sequence |
Protein sequence |