Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481110 | XP_003609698.1 | 92.982 | 114 | 7 | 1 | 1 | 113 | 1 | 114 | 1.56e-62 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481110 | sp|Q9FH22|FLZ15_ARATH | 62.264 | 53 | 20 | 0 | 56 | 108 | 63 | 115 | 4.19e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481110 | G7JLK0 | 92.982 | 114 | 7 | 1 | 1 | 113 | 1 | 114 | 7.46e-63 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0481110 | 0.821335 | 4.265728e-53 | -8.615850e-47 |
| Msa0004920 | Msa0481110 | 0.807602 | 4.665929e-50 | -8.615850e-47 |
| Msa0017510 | Msa0481110 | 0.810045 | 1.400955e-50 | -8.615850e-47 |
| Msa0036430 | Msa0481110 | 0.821389 | 4.143645e-53 | -8.615850e-47 |
| Msa0072370 | Msa0481110 | 0.818200 | 2.219557e-52 | -8.615850e-47 |
| Msa0078430 | Msa0481110 | 0.807274 | 5.476897e-50 | -8.615850e-47 |
| Msa0084500 | Msa0481110 | 0.808276 | 3.352977e-50 | -8.615850e-47 |
| Msa0095540 | Msa0481110 | 0.802238 | 6.168333e-49 | -8.615850e-47 |
| Msa0096000 | Msa0481110 | 0.802185 | 6.325926e-49 | -8.615850e-47 |
| Msa0110970 | Msa0481110 | 0.805771 | 1.136618e-49 | -8.615850e-47 |
| Msa0130570 | Msa0481110 | 0.819985 | 8.708845e-53 | -8.615850e-47 |
| Msa0141100 | Msa0481110 | 0.847053 | 1.474867e-59 | -8.615850e-47 |
| Msa0153420 | Msa0481110 | 0.840738 | 7.258285e-58 | -8.615850e-47 |
| Msa0157290 | Msa0481110 | 0.809637 | 1.715129e-50 | -8.615850e-47 |
| Msa0173990 | Msa0481110 | 0.802633 | 5.113145e-49 | -8.615850e-47 |
| Msa0176470 | Msa0481110 | 0.813123 | 3.000795e-51 | -8.615850e-47 |
| Msa0191040 | Msa0481110 | 0.857395 | 1.680566e-62 | -8.615850e-47 |
| Msa0206800 | Msa0481110 | 0.802631 | 5.117919e-49 | -8.615850e-47 |
| Msa0220300 | Msa0481110 | 0.816428 | 5.559221e-52 | -8.615850e-47 |
| Msa0225600 | Msa0481110 | 0.815319 | 9.825348e-52 | -8.615850e-47 |
| Msa0233340 | Msa0481110 | 0.857059 | 2.112101e-62 | -8.615850e-47 |
| Msa0236440 | Msa0481110 | 0.843475 | 1.369657e-58 | -8.615850e-47 |
| Msa0374850 | Msa0481110 | 0.843799 | 1.121674e-58 | -8.615850e-47 |
| Msa0375090 | Msa0481110 | 0.846079 | 2.720468e-59 | -8.615850e-47 |
| Msa0470340 | Msa0481110 | 0.849802 | 2.559813e-60 | -8.615850e-47 |
| Msa0470860 | Msa0481110 | 0.811660 | 6.266227e-51 | -8.615850e-47 |
| Msa0480950 | Msa0481110 | 0.832183 | 1.093337e-55 | -8.615850e-47 |
| Msa0481110 | Msa0484780 | 0.802824 | 4.669366e-49 | -8.615850e-47 |
| Msa0481110 | Msa0505360 | 0.800882 | 1.169683e-48 | -8.615850e-47 |
| Msa0481110 | Msa0520510 | 0.803228 | 3.852570e-49 | -8.615850e-47 |
| Msa0481110 | Msa0521540 | 0.806077 | 9.798564e-50 | -8.615850e-47 |
| Msa0481110 | Msa0531430 | 0.844168 | 8.935645e-59 | -8.615850e-47 |
| Msa0481110 | Msa0534570 | 0.841183 | 5.547117e-58 | -8.615850e-47 |
| Msa0481110 | Msa0534590 | 0.882897 | 7.084600e-71 | -8.615850e-47 |
| Msa0481110 | Msa0590800 | 0.874287 | 7.600565e-68 | -8.615850e-47 |
| Msa0481110 | Msa0611380 | 0.843277 | 1.546994e-58 | -8.615850e-47 |
| Msa0481110 | Msa0620240 | 0.806989 | 6.291759e-50 | -8.615850e-47 |
| Msa0481110 | Msa0628640 | 0.857164 | 1.966291e-62 | -8.615850e-47 |
| Msa0481110 | Msa0631120 | 0.874629 | 5.815775e-68 | -8.615850e-47 |
| Msa0481110 | Msa0650070 | 0.804458 | 2.139179e-49 | -8.615850e-47 |
| Msa0481110 | Msa0666030 | 0.847539 | 1.084689e-59 | -8.615850e-47 |
| Msa0481110 | Msa0669340 | 0.885163 | 1.030567e-71 | -8.615850e-47 |
| Msa0481110 | Msa0684500 | 0.845571 | 3.738797e-59 | -8.615850e-47 |
| Msa0481110 | Msa0716450 | 0.838981 | 2.081704e-57 | -8.615850e-47 |
| Msa0481110 | Msa0717260 | 0.847412 | 1.175895e-59 | -8.615850e-47 |
| Msa0481110 | Msa0741900 | 0.841321 | 5.100825e-58 | -8.615850e-47 |
| Msa0481110 | Msa0756630 | -0.802232 | 6.184935e-49 | -8.615850e-47 |
| Msa0481110 | Msa0758320 | 0.821052 | 4.956436e-53 | -8.615850e-47 |
| Msa0481110 | Msa0775440 | 0.809321 | 2.004579e-50 | -8.615850e-47 |
| Msa0481110 | Msa0790850 | 0.800419 | 1.453876e-48 | -8.615850e-47 |
| Msa0481110 | Msa0799030 | 0.839310 | 1.710732e-57 | -8.615850e-47 |
| Msa0481110 | Msa0799700 | 0.824753 | 6.802433e-54 | -8.615850e-47 |
| Msa0481110 | Msa0804680 | 0.807195 | 5.689688e-50 | -8.615850e-47 |
| Msa0481110 | Msa0810020 | 0.834232 | 3.376169e-56 | -8.615850e-47 |
| Msa0481110 | Msa0812820 | 0.853937 | 1.717766e-61 | -8.615850e-47 |
| Msa0481110 | Msa0822990 | 0.824533 | 7.667812e-54 | -8.615850e-47 |
| Msa0481110 | Msa0837440 | 0.851357 | 9.352616e-61 | -8.615850e-47 |
| Msa0481110 | Msa0837980 | 0.822326 | 2.515347e-53 | -8.615850e-47 |
| Msa0481110 | Msa0853320 | 0.847709 | 9.743205e-60 | -8.615850e-47 |
| Msa0481110 | Msa0862100 | 0.822084 | 2.862405e-53 | -8.615850e-47 |
| Msa0481110 | Msa0869450 | 0.806342 | 8.616644e-50 | -8.615850e-47 |
| Msa0481110 | Msa0876200 | 0.802891 | 4.524393e-49 | -8.615850e-47 |
| Msa0481110 | Msa0880140 | 0.811596 | 6.468334e-51 | -8.615850e-47 |
| Msa0481110 | Msa0880710 | 0.811486 | 6.834821e-51 | -8.615850e-47 |
| Msa0481110 | Msa0885060 | 0.812247 | 4.665806e-51 | -8.615850e-47 |
| Msa0481110 | Msa0966420 | 0.804414 | 2.185459e-49 | -8.615850e-47 |
| Msa0481110 | Msa0979510 | 0.805695 | 1.178854e-49 | -8.615850e-47 |
| Msa0481110 | Msa0981010 | 0.823618 | 1.257044e-53 | -8.615850e-47 |
| Msa0481110 | Msa1002620 | 0.835588 | 1.538064e-56 | -8.615850e-47 |
| Msa0481110 | Msa1010110 | 0.824311 | 8.645752e-54 | -8.615850e-47 |
| Msa0481110 | Msa1013770 | 0.808502 | 3.000548e-50 | -8.615850e-47 |
| Msa0481110 | Msa1033560 | 0.839601 | 1.437577e-57 | -8.615850e-47 |
| Msa0481110 | Msa1113850 | 0.829283 | 5.612805e-55 | -8.615850e-47 |
| Msa0481110 | Msa1125760 | 0.803396 | 3.557201e-49 | -8.615850e-47 |
| Msa0481110 | Msa1127890 | 0.810053 | 1.395399e-50 | -8.615850e-47 |
| Msa0481110 | Msa1133000 | 0.805823 | 1.108013e-49 | -8.615850e-47 |
| Msa0481110 | Msa1140690 | 0.816778 | 4.639613e-52 | -8.615850e-47 |
| Msa0481110 | Msa1160400 | 0.825642 | 4.193408e-54 | -8.615850e-47 |
| Msa0481110 | Msa1172450 | 0.800589 | 1.342543e-48 | -8.615850e-47 |
| Msa0481110 | Msa1172670 | 0.816613 | 5.052481e-52 | -8.615850e-47 |
| Msa0481110 | Msa1197590 | 0.810534 | 1.099184e-50 | -8.615850e-47 |
| Msa0481110 | Msa1203000 | 0.836635 | 8.337138e-57 | -8.615850e-47 |
| Msa0481110 | Msa1214890 | 0.818210 | 2.208152e-52 | -8.615850e-47 |
| Msa0481110 | Msa1217940 | 0.959375 | 2.259646e-117 | -8.615850e-47 |
| Msa0481110 | Msa1218480 | 0.829371 | 5.344127e-55 | -8.615850e-47 |
| Msa0481110 | Msa1219260 | 0.851003 | 1.177672e-60 | -8.615850e-47 |
| Msa0481110 | Msa1254700 | 0.803065 | 4.163427e-49 | -8.615850e-47 |
| Msa0481110 | Msa1255040 | -0.803493 | 3.395594e-49 | -8.615850e-47 |
| Msa0481110 | Msa1255280 | 0.831033 | 2.099538e-55 | -8.615850e-47 |
| Msa0481110 | Msa1258050 | 0.850539 | 1.590386e-60 | -8.615850e-47 |
| Msa0481110 | Msa1266960 | 0.848736 | 5.068511e-60 | -8.615850e-47 |
| Msa0481110 | Msa1291870 | 0.808621 | 2.831312e-50 | -8.615850e-47 |
| Msa0481110 | Msa1308380 | 0.802998 | 4.299663e-49 | -8.615850e-47 |
| Msa0481110 | Msa1320740 | 0.806744 | 7.087655e-50 | -8.615850e-47 |
| Msa0481110 | Msa1331910 | 0.823140 | 1.625961e-53 | -8.615850e-47 |
| Msa0481110 | Msa1342430 | 0.801405 | 9.144627e-49 | -8.615850e-47 |
| Msa0481110 | Msa1385670 | 0.812772 | 3.582288e-51 | -8.615850e-47 |
| Msa0481110 | Msa1395870 | 0.838005 | 3.716709e-57 | -8.615850e-47 |
| Msa0481110 | Msa1397250 | 0.813851 | 2.076476e-51 | -8.615850e-47 |
| Msa0481110 | Msa1399560 | 0.855667 | 5.410055e-62 | -8.615850e-47 |
| Msa0481110 | Msa1401150 | 0.828141 | 1.060137e-54 | -8.615850e-47 |
| Msa0481110 | Msa1440340 | 0.803639 | 3.167299e-49 | -8.615850e-47 |
| Msa0481110 | Msa1443840 | 0.814528 | 1.471235e-51 | -8.615850e-47 |
| Msa0481110 | Msa1460380 | 0.813073 | 3.077662e-51 | -8.615850e-47 |
| Msa0481110 | Msa1460890 | 0.837429 | 5.224620e-57 | -8.615850e-47 |
| Msa0481110 | Msa1463670 | 0.807803 | 4.228937e-50 | -8.615850e-47 |
| Msa0251240 | Msa0481110 | 0.840414 | 8.820377e-58 | -8.615850e-47 |
| Msa0266450 | Msa0481110 | 0.823978 | 1.035009e-53 | -8.615850e-47 |
| Msa0287650 | Msa0481110 | 0.820344 | 7.208177e-53 | -8.615850e-47 |
| Msa0288190 | Msa0481110 | 0.805341 | 1.398553e-49 | -8.615850e-47 |
| Msa0311690 | Msa0481110 | 0.835401 | 1.714302e-56 | -8.615850e-47 |
| Msa0311860 | Msa0481110 | 0.805895 | 1.070294e-49 | -8.615850e-47 |
| Msa0326540 | Msa0481110 | 0.813700 | 2.241327e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481110 | MtrunA17_Chr4g0067541 | 92.982 | 114 | 7 | 1 | 1 | 113 | 1 | 114 | 1.44e-66 | 196 |
| Msa0481110 | MtrunA17_Chr2g0295651 | 60.684 | 117 | 33 | 3 | 1 | 109 | 1 | 112 | 4.06e-38 | 125 |
| Msa0481110 | MtrunA17_Chr3g0115551 | 46.970 | 66 | 31 | 1 | 38 | 103 | 71 | 132 | 4.95e-15 | 66.6 |
| Msa0481110 | MtrunA17_Chr8g0344991 | 40.541 | 74 | 36 | 1 | 36 | 101 | 6 | 79 | 5.09e-13 | 60.8 |
| Msa0481110 | MtrunA17_Chr4g0070221 | 52.083 | 48 | 22 | 1 | 56 | 103 | 173 | 219 | 7.13e-12 | 59.7 |
| Msa0481110 | MtrunA17_Chr3g0124361 | 38.889 | 72 | 41 | 1 | 35 | 103 | 95 | 166 | 2.76e-11 | 57.8 |
| Msa0481110 | MtrunA17_Chr3g0138651 | 53.191 | 47 | 22 | 0 | 56 | 102 | 349 | 395 | 7.18e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481110 | AT5G49120.1 | 62.264 | 53 | 20 | 0 | 56 | 108 | 63 | 115 | 4.25e-21 | 82.4 |
| Msa0481110 | AT1G22160.1 | 48.276 | 58 | 30 | 0 | 53 | 110 | 70 | 127 | 3.21e-14 | 64.7 |
| Msa0481110 | AT4G39795.1 | 42.029 | 69 | 39 | 1 | 33 | 101 | 46 | 113 | 4.21e-13 | 61.2 |
| Msa0481110 | AT1G78020.1 | 53.488 | 43 | 20 | 0 | 61 | 103 | 89 | 131 | 8.75e-13 | 61.2 |
| Msa0481110 | AT5G47060.2 | 56.000 | 50 | 21 | 1 | 61 | 110 | 97 | 145 | 7.38e-12 | 59.3 |
| Msa0481110 | AT5G47060.1 | 56.000 | 50 | 21 | 1 | 61 | 110 | 97 | 145 | 7.38e-12 | 59.3 |
| Msa0481110 | AT4G17670.1 | 52.000 | 50 | 23 | 1 | 61 | 110 | 76 | 124 | 9.18e-11 | 55.8 |
Find 19 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAAACCATGGGTAAAAC+TGG | 0.321231 | 3_3:-86863112 | None:intergenic |
| AGAAAAGTTGAAACCTTAAA+AGG | 0.340742 | 3_3:-86862647 | None:intergenic |
| AACCTTAAAAGGAGAATGAT+AGG | 0.405313 | 3_3:-86862636 | None:intergenic |
| CACTGGAAATGTTGGGGTGG+GGG | 0.412454 | 3_3:+86863056 | Msa0481110:three_prime_UTR |
| TGCAGCAAGAAGCTCTTACC+TGG | 0.449852 | 3_3:+86862686 | Msa0481110:CDS |
| AGTAGTGACACTGGAAATGT+TGG | 0.487421 | 3_3:+86863048 | Msa0481110:exon |
| AAAGGAGAATGATAGGAAAG+TGG | 0.494802 | 3_3:-86862629 | None:intergenic |
| CCTACAATCCACGCTACAAA+AGG | 0.495514 | 3_3:-86862967 | None:intergenic |
| ACACTGGAAATGTTGGGGTG+GGG | 0.537070 | 3_3:+86863055 | Msa0481110:three_prime_UTR |
| ATCAGAGAATGAAATATGGT+TGG | 0.543247 | 3_3:+86862470 | Msa0481110:exon |
| GAATGAAATATGGTTGGTCT+TGG | 0.548398 | 3_3:+86862476 | Msa0481110:exon |
| GACACTGGAAATGTTGGGGT+GGG | 0.558364 | 3_3:+86863054 | Msa0481110:three_prime_UTR |
| TCTTGCTGCATAGAAAGCAT+TGG | 0.559666 | 3_3:-86862673 | None:intergenic |
| GTTGATTGTGCTAAGCATCA+TGG | 0.561835 | 3_3:-86862591 | None:intergenic |
| GTAGTGACACTGGAAATGTT+GGG | 0.588242 | 3_3:+86863049 | Msa0481110:exon |
| TACATGTAGATATCTTTCCC+AGG | 0.593576 | 3_3:-86862704 | None:intergenic |
| GCAGCAAGAAGCTCTTACCT+GGG | 0.606797 | 3_3:+86862687 | Msa0481110:CDS |
| TGACACTGGAAATGTTGGGG+TGG | 0.614413 | 3_3:+86863053 | Msa0481110:three_prime_UTR |
| TAGTGACACTGGAAATGTTG+GGG | 0.702637 | 3_3:+86863050 | Msa0481110:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGCTA+TGG | + | chr3_3:86863081-86863100 | Msa0481110:three_prime_UTR | 10.0% |
| !! | AAAAATCAGAGAATGAAATA+TGG | + | chr3_3:86862466-86862485 | Msa0481110:exon | 20.0% |
| !!! | ATATTACTCTTTTTCTTATG+TGG | - | chr3_3:86862524-86862543 | None:intergenic | 20.0% |
| !!! | CTTTTAATTTTATCTCCTAT+AGG | + | chr3_3:86862787-86862806 | Msa0481110:intron | 20.0% |
| !!! | ATGCATTTTTTTTTTCTTCT+TGG | + | chr3_3:86862826-86862845 | Msa0481110:intron | 20.0% |
| !!! | GAATTTTGTATTAGTATATG+TGG | + | chr3_3:86862895-86862914 | Msa0481110:intron | 20.0% |
| !!! | GAGTTATTTTTTTGTCTTAA+TGG | + | chr3_3:86862917-86862936 | Msa0481110:intron | 20.0% |
| ! | AGAAAAGTTGAAACCTTAAA+AGG | - | chr3_3:86862650-86862669 | None:intergenic | 25.0% |
| ! | GTAAGATCTATATATCCTAT+AGG | - | chr3_3:86862805-86862824 | None:intergenic | 25.0% |
| ! | CAATTAACATCAAAAGATCT+GGG | - | chr3_3:86862876-86862895 | None:intergenic | 25.0% |
| ! | TCAATTAACATCAAAAGATC+TGG | - | chr3_3:86862877-86862896 | None:intergenic | 25.0% |
| ! | TCTGATTTTTCTTTCTGTTG+TGG | - | chr3_3:86862456-86862475 | None:intergenic | 30.0% |
| ATCAGAGAATGAAATATGGT+TGG | + | chr3_3:86862470-86862489 | Msa0481110:exon | 30.0% | |
| ! | TTCCTATCATTCTCCTTTTA+AGG | + | chr3_3:86862634-86862653 | Msa0481110:CDS | 30.0% |
| AACCTTAAAAGGAGAATGAT+AGG | - | chr3_3:86862639-86862658 | None:intergenic | 30.0% | |
| ! | AATGCATGCTACACTTATTT+TGG | - | chr3_3:86862747-86862766 | None:intergenic | 30.0% |
| !!! | ATCTGGGTATTTTTTCTGTA+AGG | - | chr3_3:86862860-86862879 | None:intergenic | 30.0% |
| !! | GAATGAAATATGGTTGGTCT+TGG | + | chr3_3:86862476-86862495 | Msa0481110:exon | 35.0% |
| AAAGGAGAATGATAGGAAAG+TGG | - | chr3_3:86862632-86862651 | None:intergenic | 35.0% | |
| TACATGTAGATATCTTTCCC+AGG | - | chr3_3:86862707-86862726 | None:intergenic | 35.0% | |
| TACATGTACAAGTGAGTTCT+CGG | + | chr3_3:86862719-86862738 | Msa0481110:intron | 35.0% | |
| !! | TAGGTGCAAGCATATTTTAG+CGG | + | chr3_3:86862986-86863005 | Msa0481110:CDS | 35.0% |
| !! | TTTTTGAAGAGTAGTGACAC+TGG | + | chr3_3:86863039-86863058 | Msa0481110:exon | 35.0% |
| GTTGATTGTGCTAAGCATCA+TGG | - | chr3_3:86862594-86862613 | None:intergenic | 40.0% | |
| ! | TCTTGCTGCATAGAAAGCAT+TGG | - | chr3_3:86862676-86862695 | None:intergenic | 40.0% |
| ATGGCACCTATTTATTGCAG+AGG | + | chr3_3:86862936-86862955 | Msa0481110:intron | 40.0% | |
| CTGTCTCCTCTGCAATAAAT+AGG | - | chr3_3:86862945-86862964 | None:intergenic | 40.0% | |
| AGTAGTGACACTGGAAATGT+TGG | + | chr3_3:86863048-86863067 | Msa0481110:exon | 40.0% | |
| GTAGTGACACTGGAAATGTT+GGG | + | chr3_3:86863049-86863068 | Msa0481110:exon | 40.0% | |
| TAGTGACACTGGAAATGTTG+GGG | + | chr3_3:86863050-86863069 | Msa0481110:exon | 40.0% | |
| CCTACAATCCACGCTACAAA+AGG | - | chr3_3:86862970-86862989 | None:intergenic | 45.0% | |
| !! | CCTTTTGTAGCGTGGATTGT+AGG | + | chr3_3:86862967-86862986 | Msa0481110:CDS | 45.0% |
| !!! | CAAGCATATTTTAGCGGACG+AGG | + | chr3_3:86862992-86863011 | Msa0481110:CDS | 45.0% |
| !!! | TATTTTAGCGGACGAGGAAG+AGG | + | chr3_3:86862998-86863017 | Msa0481110:CDS | 45.0% |
| TGCAGCAAGAAGCTCTTACC+TGG | + | chr3_3:86862686-86862705 | Msa0481110:CDS | 50.0% | |
| GCAGCAAGAAGCTCTTACCT+GGG | + | chr3_3:86862687-86862706 | Msa0481110:CDS | 50.0% | |
| ! | AGACAGAGCCTTTTGTAGCG+TGG | + | chr3_3:86862959-86862978 | Msa0481110:CDS | 50.0% |
| TGACACTGGAAATGTTGGGG+TGG | + | chr3_3:86863053-86863072 | Msa0481110:three_prime_UTR | 50.0% | |
| GACACTGGAAATGTTGGGGT+GGG | + | chr3_3:86863054-86863073 | Msa0481110:three_prime_UTR | 50.0% | |
| ACACTGGAAATGTTGGGGTG+GGG | + | chr3_3:86863055-86863074 | Msa0481110:three_prime_UTR | 50.0% | |
| CACTGGAAATGTTGGGGTGG+GGG | + | chr3_3:86863056-86863075 | Msa0481110:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86862439 | 86863121 | 86862439 | ID=Msa0481110;Name=Msa0481110 |
| chr3_3 | mRNA | 86862439 | 86863121 | 86862439 | ID=Msa0481110-mRNA-1;Parent=Msa0481110;Name=Msa0481110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|2|69|113 |
| chr3_3 | exon | 86862439 | 86862729 | 86862439 | ID=Msa0481110-mRNA-1:exon:25091;Parent=Msa0481110-mRNA-1 |
| chr3_3 | exon | 86862956 | 86863121 | 86862956 | ID=Msa0481110-mRNA-1:exon:25092;Parent=Msa0481110-mRNA-1 |
| chr3_3 | five_prime_UTR | 86862439 | 86862484 | 86862439 | ID=Msa0481110-mRNA-1:five_prime_utr;Parent=Msa0481110-mRNA-1 |
| chr3_3 | CDS | 86862485 | 86862729 | 86862485 | ID=Msa0481110-mRNA-1:cds;Parent=Msa0481110-mRNA-1 |
| chr3_3 | CDS | 86862956 | 86863052 | 86862956 | ID=Msa0481110-mRNA-1:cds;Parent=Msa0481110-mRNA-1 |
| chr3_3 | three_prime_UTR | 86863053 | 86863121 | 86863053 | ID=Msa0481110-mRNA-1:three_prime_utr;Parent=Msa0481110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
