Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439920 | sp|Q9LZI2|UXS2_ARATH | 65.698 | 344 | 85 | 10 | 1 | 319 | 1 | 336 | 3.12e-142 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439920 | G7JLI8 | 95.413 | 327 | 3 | 3 | 1 | 319 | 1 | 323 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa1439920 | 0.803633 | 3.175550e-49 | -8.615850e-47 |
| Msa0006840 | Msa1439920 | 0.826485 | 2.644329e-54 | -8.615850e-47 |
| Msa0019830 | Msa1439920 | 0.800851 | 1.187335e-48 | -8.615850e-47 |
| Msa0025700 | Msa1439920 | 0.806648 | 7.427030e-50 | -8.615850e-47 |
| Msa0036810 | Msa1439920 | 0.833078 | 6.556289e-56 | -8.615850e-47 |
| Msa0045620 | Msa1439920 | 0.822658 | 2.106113e-53 | -8.615850e-47 |
| Msa0046970 | Msa1439920 | 0.806191 | 9.271522e-50 | -8.615850e-47 |
| Msa0050530 | Msa1439920 | 0.811834 | 5.742448e-51 | -8.615850e-47 |
| Msa0073270 | Msa1439920 | 0.814350 | 1.611494e-51 | -8.615850e-47 |
| Msa0080370 | Msa1439920 | 0.804994 | 1.653565e-49 | -8.615850e-47 |
| Msa0100890 | Msa1439920 | 0.809475 | 1.857832e-50 | -8.615850e-47 |
| Msa0102920 | Msa1439920 | 0.801245 | 9.862103e-49 | -8.615850e-47 |
| Msa0106540 | Msa1439920 | 0.801045 | 1.083807e-48 | -8.615850e-47 |
| Msa1362590 | Msa1439920 | 0.807748 | 4.344623e-50 | -8.615850e-47 |
| Msa1365230 | Msa1439920 | 0.860020 | 2.762610e-63 | -8.615850e-47 |
| Msa1368420 | Msa1439920 | 0.830276 | 3.216501e-55 | -8.615850e-47 |
| Msa1369180 | Msa1439920 | -0.801873 | 7.331665e-49 | -8.615850e-47 |
| Msa1371800 | Msa1439920 | 0.830419 | 2.968362e-55 | -8.615850e-47 |
| Msa1376310 | Msa1439920 | 0.826832 | 2.184509e-54 | -8.615850e-47 |
| Msa1379270 | Msa1439920 | -0.803952 | 2.726714e-49 | -8.615850e-47 |
| Msa1383220 | Msa1439920 | 0.826958 | 2.038918e-54 | -8.615850e-47 |
| Msa1402010 | Msa1439920 | 0.804541 | 2.056096e-49 | -8.615850e-47 |
| Msa1407670 | Msa1439920 | 0.801243 | 9.869286e-49 | -8.615850e-47 |
| Msa1413020 | Msa1439920 | 0.866709 | 2.337465e-65 | -8.615850e-47 |
| Msa1434700 | Msa1439920 | 0.807993 | 3.852161e-50 | -8.615850e-47 |
| Msa1438510 | Msa1439920 | 0.816331 | 5.844677e-52 | -8.615850e-47 |
| Msa1439920 | Msa1447900 | 0.810152 | 1.328537e-50 | -8.615850e-47 |
| Msa1439920 | Msa1449770 | 0.808927 | 2.435192e-50 | -8.615850e-47 |
| Msa1439920 | Msa1450630 | -0.809846 | 1.545915e-50 | -8.615850e-47 |
| Msa0606150 | Msa1439920 | 0.808073 | 3.705423e-50 | -8.615850e-47 |
| Msa0608780 | Msa1439920 | -0.804199 | 2.422771e-49 | -8.615850e-47 |
| Msa0612880 | Msa1439920 | -0.822165 | 2.741156e-53 | -8.615850e-47 |
| Msa0623310 | Msa1439920 | 0.823335 | 1.464031e-53 | -8.615850e-47 |
| Msa0624930 | Msa1439920 | 0.803364 | 3.611104e-49 | -8.615850e-47 |
| Msa0626980 | Msa1439920 | 0.821756 | 3.408686e-53 | -8.615850e-47 |
| Msa0627360 | Msa1439920 | 0.829058 | 6.363900e-55 | -8.615850e-47 |
| Msa0649250 | Msa1439920 | -0.812750 | 3.622976e-51 | -8.615850e-47 |
| Msa0663290 | Msa1439920 | 0.806685 | 7.293823e-50 | -8.615850e-47 |
| Msa0664070 | Msa1439920 | 0.801565 | 8.479646e-49 | -8.615850e-47 |
| Msa0673940 | Msa1439920 | 0.838262 | 3.192894e-57 | -8.615850e-47 |
| Msa0687370 | Msa1439920 | 0.815896 | 7.308103e-52 | -8.615850e-47 |
| Msa0705810 | Msa1439920 | -0.814051 | 1.876225e-51 | -8.615850e-47 |
| Msa0726520 | Msa1439920 | 0.801754 | 7.756415e-49 | -8.615850e-47 |
| Msa0732970 | Msa1439920 | 0.847399 | 1.184999e-59 | -8.615850e-47 |
| Msa0734700 | Msa1439920 | 0.810856 | 9.361114e-51 | -8.615850e-47 |
| Msa0761830 | Msa1439920 | 0.828000 | 1.146698e-54 | -8.615850e-47 |
| Msa0773960 | Msa1439920 | 0.848736 | 5.069176e-60 | -8.615850e-47 |
| Msa0804170 | Msa1439920 | 0.866488 | 2.748530e-65 | -8.615850e-47 |
| Msa0828350 | Msa1439920 | 0.802143 | 6.453073e-49 | -8.615850e-47 |
| Msa0842180 | Msa1439920 | 0.831336 | 1.768432e-55 | -8.615850e-47 |
| Msa0131810 | Msa1439920 | 0.802600 | 5.195913e-49 | -8.615850e-47 |
| Msa0132080 | Msa1439920 | -0.825365 | 4.877374e-54 | -8.615850e-47 |
| Msa0137010 | Msa1439920 | -0.800376 | 1.483561e-48 | -8.615850e-47 |
| Msa0147680 | Msa1439920 | 0.825741 | 3.972737e-54 | -8.615850e-47 |
| Msa0148670 | Msa1439920 | 0.811856 | 5.679493e-51 | -8.615850e-47 |
| Msa0158760 | Msa1439920 | 0.818908 | 1.533184e-52 | -8.615850e-47 |
| Msa0166180 | Msa1439920 | 0.800390 | 1.474211e-48 | -8.615850e-47 |
| Msa0168380 | Msa1439920 | 0.810062 | 1.389138e-50 | -8.615850e-47 |
| Msa0173250 | Msa1439920 | 0.806323 | 8.699856e-50 | -8.615850e-47 |
| Msa0192830 | Msa1439920 | 0.818795 | 1.626915e-52 | -8.615850e-47 |
| Msa0195140 | Msa1439920 | -0.800990 | 1.112189e-48 | -8.615850e-47 |
| Msa0206370 | Msa1439920 | 0.847754 | 9.466051e-60 | -8.615850e-47 |
| Msa0211460 | Msa1439920 | 0.811716 | 6.090715e-51 | -8.615850e-47 |
| Msa0225070 | Msa1439920 | -0.808717 | 2.700152e-50 | -8.615850e-47 |
| Msa0235080 | Msa1439920 | 0.807040 | 6.137793e-50 | -8.615850e-47 |
| Msa1255710 | Msa1439920 | 0.826538 | 2.568445e-54 | -8.615850e-47 |
| Msa1257200 | Msa1439920 | 0.804384 | 2.217389e-49 | -8.615850e-47 |
| Msa1265570 | Msa1439920 | 0.859670 | 3.522770e-63 | -8.615850e-47 |
| Msa1286860 | Msa1439920 | -0.819743 | 9.893905e-53 | -8.615850e-47 |
| Msa1288070 | Msa1439920 | 0.837703 | 4.444312e-57 | -8.615850e-47 |
| Msa1288970 | Msa1439920 | -0.807141 | 5.843798e-50 | -8.615850e-47 |
| Msa1293840 | Msa1439920 | 0.808495 | 3.011744e-50 | -8.615850e-47 |
| Msa1297220 | Msa1439920 | -0.814985 | 1.165612e-51 | -8.615850e-47 |
| Msa1314030 | Msa1439920 | 0.801331 | 9.468444e-49 | -8.615850e-47 |
| Msa1317240 | Msa1439920 | -0.804991 | 1.655912e-49 | -8.615850e-47 |
| Msa1323260 | Msa1439920 | -0.821433 | 4.048664e-53 | -8.615850e-47 |
| Msa1328280 | Msa1439920 | 0.938634 | 4.868328e-99 | -8.615850e-47 |
| Msa1334670 | Msa1439920 | 0.861391 | 1.060088e-63 | -8.615850e-47 |
| Msa1342760 | Msa1439920 | 0.832705 | 8.116229e-56 | -8.615850e-47 |
| Msa1343450 | Msa1439920 | -0.809332 | 1.993780e-50 | -8.615850e-47 |
| Msa0375570 | Msa1439920 | -0.809188 | 2.141222e-50 | -8.615850e-47 |
| Msa0386910 | Msa1439920 | 0.830373 | 3.045320e-55 | -8.615850e-47 |
| Msa0422690 | Msa1439920 | 0.824682 | 7.073251e-54 | -8.615850e-47 |
| Msa0422820 | Msa1439920 | 0.845977 | 2.899296e-59 | -8.615850e-47 |
| Msa0422900 | Msa1439920 | 0.841272 | 5.253386e-58 | -8.615850e-47 |
| Msa0424220 | Msa1439920 | -0.812287 | 4.574340e-51 | -8.615850e-47 |
| Msa0436100 | Msa1439920 | 0.817065 | 3.999825e-52 | -8.615850e-47 |
| Msa0439030 | Msa1439920 | 0.800596 | 1.338421e-48 | -8.615850e-47 |
| Msa0444200 | Msa1439920 | 0.800873 | 1.174817e-48 | -8.615850e-47 |
| Msa0469060 | Msa1439920 | 0.827738 | 1.325740e-54 | -8.615850e-47 |
| Msa0471130 | Msa1439920 | -0.804907 | 1.724450e-49 | -8.615850e-47 |
| Msa0987640 | Msa1439920 | 0.807085 | 6.005106e-50 | -8.615850e-47 |
| Msa1003110 | Msa1439920 | 0.802272 | 6.069439e-49 | -8.615850e-47 |
| Msa1021560 | Msa1439920 | 0.826428 | 2.727593e-54 | -8.615850e-47 |
| Msa1032740 | Msa1439920 | 0.800274 | 1.556578e-48 | -8.615850e-47 |
| Msa1050260 | Msa1439920 | 0.801628 | 8.230844e-49 | -8.615850e-47 |
| Msa1060300 | Msa1439920 | 0.809659 | 1.696200e-50 | -8.615850e-47 |
| Msa1085560 | Msa1439920 | 0.801703 | 7.945199e-49 | -8.615850e-47 |
| Msa1105540 | Msa1439920 | 0.820739 | 5.850340e-53 | -8.615850e-47 |
| Msa1105580 | Msa1439920 | 0.804394 | 2.206248e-49 | -8.615850e-47 |
| Msa0240590 | Msa1439920 | -0.814821 | 1.267672e-51 | -8.615850e-47 |
| Msa0260570 | Msa1439920 | 0.810753 | 9.852878e-51 | -8.615850e-47 |
| Msa0260980 | Msa1439920 | 0.841521 | 4.518650e-58 | -8.615850e-47 |
| Msa0270390 | Msa1439920 | 0.803361 | 3.615981e-49 | -8.615850e-47 |
| Msa0273360 | Msa1439920 | 0.801333 | 9.461757e-49 | -8.615850e-47 |
| Msa0278480 | Msa1439920 | 0.828880 | 7.029880e-55 | -8.615850e-47 |
| Msa0279000 | Msa1439920 | 0.805858 | 1.089769e-49 | -8.615850e-47 |
| Msa0290800 | Msa1439920 | 0.819332 | 1.227662e-52 | -8.615850e-47 |
| Msa0328100 | Msa1439920 | 0.811206 | 7.862980e-51 | -8.615850e-47 |
| Msa0328870 | Msa1439920 | 0.816442 | 5.517323e-52 | -8.615850e-47 |
| Msa0336430 | Msa1439920 | 0.833920 | 4.041304e-56 | -8.615850e-47 |
| Msa0336460 | Msa1439920 | 0.818881 | 1.555476e-52 | -8.615850e-47 |
| Msa0336520 | Msa1439920 | 0.848197 | 7.143153e-60 | -8.615850e-47 |
| Msa0349930 | Msa1439920 | 0.850589 | 1.540474e-60 | -8.615850e-47 |
| Msa1148930 | Msa1439920 | 0.813794 | 2.136910e-51 | -8.615850e-47 |
| Msa1170320 | Msa1439920 | 0.813456 | 2.536141e-51 | -8.615850e-47 |
| Msa1192360 | Msa1439920 | 0.820343 | 7.212485e-53 | -8.615850e-47 |
| Msa1206920 | Msa1439920 | 0.805643 | 1.209056e-49 | -8.615850e-47 |
| Msa1217890 | Msa1439920 | 0.925011 | 3.267296e-90 | -8.615850e-47 |
| Msa1220720 | Msa1439920 | 0.856381 | 3.342761e-62 | -8.615850e-47 |
| Msa0523720 | Msa1439920 | 0.848102 | 7.588970e-60 | -8.615850e-47 |
| Msa0530660 | Msa1439920 | 0.825846 | 3.752470e-54 | -8.615850e-47 |
| Msa0555280 | Msa1439920 | 0.803784 | 2.954952e-49 | -8.615850e-47 |
| Msa0567570 | Msa1439920 | 0.805225 | 1.479386e-49 | -8.615850e-47 |
| Msa0568460 | Msa1439920 | -0.804850 | 1.772423e-49 | -8.615850e-47 |
| Msa0587180 | Msa1439920 | 0.831408 | 1.698049e-55 | -8.615850e-47 |
| Msa0930770 | Msa1439920 | 0.807961 | 3.912963e-50 | -8.615850e-47 |
| Msa0951150 | Msa1439920 | 0.802850 | 4.611962e-49 | -8.615850e-47 |
| Msa0967900 | Msa1439920 | -0.806439 | 8.221948e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439920 | MtrunA17_Chr4g0067461 | 95.413 | 327 | 3 | 3 | 1 | 319 | 1 | 323 | 0.0 | 626 |
| Msa1439920 | MtrunA17_Chr1g0195521 | 61.299 | 354 | 99 | 5 | 1 | 319 | 1 | 351 | 1.84e-140 | 404 |
| Msa1439920 | MtrunA17_Chr4g0031131 | 74.312 | 218 | 45 | 3 | 113 | 319 | 33 | 250 | 7.10e-112 | 328 |
| Msa1439920 | MtrunA17_Chr2g0327981 | 74.312 | 218 | 45 | 3 | 113 | 319 | 39 | 256 | 1.91e-110 | 324 |
| Msa1439920 | MtrunA17_Chr1g0182091 | 86.822 | 129 | 12 | 1 | 196 | 319 | 5 | 133 | 1.32e-78 | 239 |
| Msa1439920 | MtrunA17_Chr1g0182071 | 52.261 | 199 | 78 | 6 | 7 | 199 | 12 | 199 | 5.10e-53 | 173 |
| Msa1439920 | MtrunA17_Chr2g0314601 | 26.923 | 234 | 137 | 9 | 112 | 319 | 7 | 232 | 4.36e-16 | 79.0 |
| Msa1439920 | MtrunA17_Chr8g0359401 | 26.250 | 240 | 143 | 9 | 106 | 319 | 1 | 232 | 6.23e-16 | 78.6 |
| Msa1439920 | MtrunA17_Chr1g0147841 | 26.496 | 234 | 138 | 11 | 112 | 319 | 5 | 230 | 2.40e-13 | 70.5 |
| Msa1439920 | MtrunA17_Chr7g0230291 | 25.237 | 317 | 186 | 13 | 32 | 319 | 15 | 309 | 8.24e-12 | 65.5 |
| Msa1439920 | MtrunA17_Chr4g0056941 | 26.471 | 340 | 193 | 12 | 14 | 319 | 4 | 320 | 1.26e-11 | 65.1 |
| Msa1439920 | MtrunA17_Chr4g0076751 | 28.346 | 254 | 135 | 10 | 107 | 319 | 20 | 267 | 2.90e-11 | 63.9 |
| Msa1439920 | MtrunA17_Chr4g0011281 | 24.198 | 343 | 191 | 13 | 24 | 319 | 8 | 328 | 3.13e-11 | 63.9 |
| Msa1439920 | MtrunA17_Chr3g0121661 | 26.899 | 316 | 179 | 14 | 35 | 319 | 32 | 326 | 6.75e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439920 | AT3G62830.2 | 65.698 | 344 | 85 | 10 | 1 | 319 | 1 | 336 | 3.17e-143 | 412 |
| Msa1439920 | AT3G62830.1 | 65.698 | 344 | 85 | 10 | 1 | 319 | 1 | 336 | 3.17e-143 | 412 |
| Msa1439920 | AT2G47650.1 | 65.029 | 346 | 86 | 11 | 1 | 319 | 1 | 338 | 1.29e-141 | 407 |
| Msa1439920 | AT2G47650.2 | 65.029 | 346 | 86 | 11 | 1 | 319 | 1 | 338 | 1.31e-141 | 407 |
| Msa1439920 | AT3G53520.3 | 62.722 | 338 | 98 | 7 | 6 | 319 | 4 | 337 | 1.62e-139 | 399 |
| Msa1439920 | AT3G53520.4 | 63.095 | 336 | 98 | 7 | 6 | 319 | 4 | 335 | 2.43e-138 | 400 |
| Msa1439920 | AT3G53520.1 | 62.722 | 338 | 98 | 7 | 6 | 319 | 4 | 337 | 3.01e-138 | 399 |
| Msa1439920 | AT3G53520.2 | 62.611 | 337 | 98 | 7 | 6 | 318 | 4 | 336 | 1.19e-137 | 397 |
| Msa1439920 | AT3G46440.2 | 73.853 | 218 | 46 | 3 | 113 | 319 | 30 | 247 | 1.48e-111 | 327 |
| Msa1439920 | AT3G46440.1 | 73.853 | 218 | 46 | 3 | 113 | 319 | 30 | 247 | 1.48e-111 | 327 |
| Msa1439920 | AT2G28760.1 | 73.853 | 218 | 46 | 3 | 113 | 319 | 32 | 249 | 1.82e-111 | 327 |
| Msa1439920 | AT2G28760.2 | 73.853 | 218 | 46 | 3 | 113 | 319 | 32 | 249 | 1.82e-111 | 327 |
| Msa1439920 | AT2G28760.3 | 73.853 | 218 | 46 | 3 | 113 | 319 | 32 | 249 | 1.82e-111 | 327 |
| Msa1439920 | AT5G59290.2 | 73.394 | 218 | 47 | 3 | 113 | 319 | 46 | 263 | 2.00e-111 | 327 |
| Msa1439920 | AT2G28760.4 | 73.853 | 218 | 46 | 3 | 113 | 319 | 63 | 280 | 2.04e-111 | 328 |
| Msa1439920 | AT5G59290.1 | 73.394 | 218 | 47 | 3 | 113 | 319 | 31 | 248 | 2.73e-111 | 327 |
| Msa1439920 | AT5G59290.4 | 73.394 | 218 | 47 | 3 | 113 | 319 | 2 | 219 | 3.09e-111 | 325 |
| Msa1439920 | AT5G59290.3 | 73.394 | 218 | 47 | 3 | 113 | 319 | 24 | 241 | 8.18e-111 | 325 |
| Msa1439920 | AT3G14790.1 | 26.667 | 240 | 142 | 9 | 106 | 319 | 1 | 232 | 7.99e-18 | 84.7 |
| Msa1439920 | AT3G14790.2 | 26.667 | 240 | 142 | 9 | 106 | 319 | 4 | 235 | 8.55e-18 | 84.3 |
| Msa1439920 | AT1G53500.1 | 27.119 | 236 | 138 | 9 | 110 | 319 | 7 | 234 | 4.09e-17 | 82.4 |
| Msa1439920 | AT1G78570.1 | 27.917 | 240 | 139 | 9 | 106 | 319 | 1 | 232 | 2.82e-16 | 80.1 |
| Msa1439920 | AT4G23920.1 | 31.609 | 174 | 92 | 7 | 112 | 265 | 3 | 169 | 2.91e-11 | 63.9 |
Find 81 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCTAATAAGTTCAAAAT+TGG | 0.198229 | tig0028916:+1428 | None:intergenic |
| AGCATGTTTGTTCTCGTTCT+TGG | 0.257092 | tig0028916:+1813 | None:intergenic |
| CGTGATTGATAATTACTTTA+CGG | 0.266771 | tig0028916:-1487 | Msa1439920:CDS |
| ATCCTCAAGCTGAGACTTAC+TGG | 0.291310 | tig0028916:-926 | Msa1439920:CDS |
| CTTTCAATTTGTTTCAGATT+TGG | 0.295831 | tig0028916:-354 | Msa1439920:CDS |
| TTTCAGATTGATCTCTTGTT+TGG | 0.296925 | tig0028916:+1877 | None:intergenic |
| CGAGTCCCTTTCCTTCTCAT+TGG | 0.317422 | tig0028916:-1783 | Msa1439920:CDS |
| CCATCATCAATGCACATTCT+TGG | 0.332578 | tig0028916:+546 | None:intergenic |
| TGGATCGAGAAGGGAGATAG+TGG | 0.356821 | tig0028916:+1736 | None:intergenic |
| GTGATTGATAATTACTTTAC+GGG | 0.378536 | tig0028916:-1486 | Msa1439920:CDS |
| AAGGATCCATTGACTGTCTA+TGG | 0.380493 | tig0028916:-398 | Msa1439920:CDS |
| AAAACGTGTTGCTGAGACTT+TGG | 0.384940 | tig0028916:-738 | Msa1439920:CDS |
| GGATTAAACTTGTAATGAAC+AGG | 0.392430 | tig0028916:+1342 | None:intergenic |
| GAGAATGTTGTACATCATAT+TGG | 0.418661 | tig0028916:-1456 | Msa1439920:CDS |
| TGTCTAATAAGTTCAAAATT+GGG | 0.421635 | tig0028916:+1429 | None:intergenic |
| CAGAAGAGAGTACTGGTTAC+CGG | 0.448087 | tig0028916:-1573 | Msa1439920:CDS |
| TTTGTTCTCGTTCTTGGAAG+AGG | 0.448200 | tig0028916:+1819 | None:intergenic |
| TTGTAATGAACAGGGGAAGC+AGG | 0.449020 | tig0028916:+1351 | None:intergenic |
| TGATCAACTTCAAGAAGAAT+AGG | 0.459638 | tig0028916:+1393 | None:intergenic |
| GTGGGGACACTAAACATGTT+AGG | 0.462472 | tig0028916:-1020 | Msa1439920:CDS |
| CCATCGCCATAGACAGTCAA+TGG | 0.480004 | tig0028916:+392 | None:intergenic |
| GTGGAAGAGTGGATCGAGAA+GGG | 0.481083 | tig0028916:+1727 | None:intergenic |
| AAGATGACTTCCAACGAAAC+CGG | 0.483644 | tig0028916:+1545 | None:intergenic |
| ATGGATTACCACAGAGGAGC+TGG | 0.486727 | tig0028916:-713 | Msa1439920:CDS |
| CGAAGAGTTCCATTGGCCGT+TGG | 0.493295 | tig0028916:-1612 | Msa1439920:CDS |
| CCAAGAATGTGCATTGATGA+TGG | 0.497186 | tig0028916:-546 | Msa1439920:CDS |
| TCCTCAAGCTGAGACTTACT+GGG | 0.502132 | tig0028916:-925 | Msa1439920:CDS |
| CCATTGACTGTCTATGGCGA+TGG | 0.505545 | tig0028916:-392 | Msa1439920:CDS |
| TGTTGCTGAGACTTTGGCTA+TGG | 0.506401 | tig0028916:-732 | Msa1439920:CDS |
| GTTAACTCTTCCGACTCGGC+GGG | 0.509194 | tig0028916:-1670 | Msa1439920:CDS |
| ACCGGTGGAGCCGGTTTCGT+TGG | 0.513391 | tig0028916:-1555 | Msa1439920:CDS |
| TCCAACGAAACCGGCTCCAC+CGG | 0.522129 | tig0028916:+1554 | None:intergenic |
| GGTCAGTAACTTCGTTGCTC+AGG | 0.523665 | tig0028916:-517 | Msa1439920:intron |
| GCTATTCCAATGAGAAGGAA+AGG | 0.524748 | tig0028916:+1777 | None:intergenic |
| GACACTAAACATGTTAGGAT+TGG | 0.525969 | tig0028916:-1015 | Msa1439920:CDS |
| GTAAGAAGTTGTTATGATGA+GGG | 0.536932 | tig0028916:-761 | Msa1439920:CDS |
| TTTCGTTGGAAGTCATCTTG+TGG | 0.537156 | tig0028916:-1541 | Msa1439920:CDS |
| CAAGAGACAGAAGAGAGTAC+TGG | 0.540150 | tig0028916:-1580 | Msa1439920:CDS |
| GAGATAGTGGAAGAAGAGAG+TGG | 0.540497 | tig0028916:+1749 | None:intergenic |
| AGTTGATCAGATCTATCACT+TGG | 0.542611 | tig0028916:-1379 | Msa1439920:CDS |
| GTACTGGTTACCGGTGGAGC+CGG | 0.546414 | tig0028916:-1564 | Msa1439920:CDS |
| TGTAAGAAGTTGTTATGATG+AGG | 0.548578 | tig0028916:-762 | Msa1439920:CDS |
| CTTTATGCAGGCATTGAGGA+AGG | 0.549255 | tig0028916:-417 | Msa1439920:intron |
| TTGATAATTACTTTACGGGA+AGG | 0.549310 | tig0028916:-1482 | Msa1439920:CDS |
| GTGGATCGTTTGATTGAAAG+AGG | 0.551694 | tig0028916:-1522 | Msa1439920:CDS |
| GTTAGGATTGGCAAAGAGAG+TGG | 0.554980 | tig0028916:-1003 | Msa1439920:CDS |
| TGTGGAAGAGTGGATCGAGA+AGG | 0.559049 | tig0028916:+1726 | None:intergenic |
| CTATTCCAATGAGAAGGAAA+GGG | 0.569018 | tig0028916:+1778 | None:intergenic |
| AAGAAAACGAAGAGTTCCAT+TGG | 0.571610 | tig0028916:-1619 | Msa1439920:CDS |
| TGGCACAAGACGAATGTGGT+GGG | 0.572374 | tig0028916:-1038 | Msa1439920:intron |
| TGTAATGAACAGGGGAAGCA+GGG | 0.573819 | tig0028916:+1352 | None:intergenic |
| CCACAGAGGAGCTGGCATTG+AGG | 0.576827 | tig0028916:-705 | Msa1439920:intron |
| CATTGACTGTCTATGGCGAT+GGG | 0.579490 | tig0028916:-391 | Msa1439920:CDS |
| CCCCAGTAAGTCTCAGCTTG+AGG | 0.582638 | tig0028916:+924 | None:intergenic |
| TAAACTTTATGCAGGCATTG+AGG | 0.588893 | tig0028916:-421 | Msa1439920:intron |
| TCAGCTTGAGGATGTTGAAG+TGG | 0.597705 | tig0028916:+936 | None:intergenic |
| GATGATGAATCGTGATGTTG+TGG | 0.601310 | tig0028916:+1708 | None:intergenic |
| CCGAGTCGGAAGAGTTAACT+CGG | 0.603655 | tig0028916:+1674 | None:intergenic |
| CAAGAATGTGCATTGATGAT+GGG | 0.605694 | tig0028916:-545 | Msa1439920:CDS |
| AAATAGCTATTCCAATGAGA+AGG | 0.607007 | tig0028916:+1772 | None:intergenic |
| CCGAGTTAACTCTTCCGACT+CGG | 0.612607 | tig0028916:-1674 | Msa1439920:CDS |
| TTTGCTGACTAGTACAAGTG+AGG | 0.617496 | tig0028916:-970 | Msa1439920:CDS |
| ATCGTGATGTTGTGGAAGAG+TGG | 0.625699 | tig0028916:+1716 | None:intergenic |
| AAACTTTATTATTACCAATG+GGG | 0.626498 | tig0028916:+892 | None:intergenic |
| AGTTAACTCTTCCGACTCGG+CGG | 0.628097 | tig0028916:-1671 | Msa1439920:CDS |
| TCTAACAGAACCCGCCGAGT+CGG | 0.631912 | tig0028916:+1660 | None:intergenic |
| TTAGGATTGGCAAAGAGAGT+GGG | 0.633906 | tig0028916:-1002 | Msa1439920:CDS |
| TTGGCACAAGACGAATGTGG+TGG | 0.637095 | tig0028916:-1039 | Msa1439920:intron |
| GGCACAAGACGAATGTGGTG+GGG | 0.639098 | tig0028916:-1037 | Msa1439920:intron |
| GATTAAACTTGTAATGAACA+GGG | 0.642045 | tig0028916:+1343 | None:intergenic |
| ACTAGTACAAGTGAGGTGTA+CGG | 0.654296 | tig0028916:-963 | Msa1439920:CDS |
| CGGGTTCTGTTAGAGGAACA+CGG | 0.655861 | tig0028916:-1651 | Msa1439920:CDS |
| CCTCAATGCCAGCTCCTCTG+TGG | 0.660878 | tig0028916:+705 | None:intergenic |
| GTGCATTGATGATGGGCGTG+TGG | 0.671735 | tig0028916:-538 | Msa1439920:CDS |
| ATTAAACTTGTAATGAACAG+GGG | 0.672549 | tig0028916:+1344 | None:intergenic |
| CCTCAAGCTGAGACTTACTG+GGG | 0.692032 | tig0028916:-924 | Msa1439920:CDS |
| ACGATGTGATGATGAATCTG+TGG | 0.708850 | tig0028916:+1848 | None:intergenic |
| CTCAAGCTGAGACTTACTGG+GGG | 0.710262 | tig0028916:-923 | Msa1439920:CDS |
| AAGAGAGTACTGGTTACCGG+TGG | 0.713952 | tig0028916:-1570 | Msa1439920:CDS |
| AATTTGGCACAAGACGAATG+TGG | 0.732807 | tig0028916:-1042 | Msa1439920:intron |
| TTGGCTATGGATTACCACAG+AGG | 0.735724 | tig0028916:-719 | Msa1439920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATTTTATTTATT+TGG | - | tig0028916:1447-1466 | Msa1439920:CDS | 0.0% |
| !!! | TTTATTTTATTTTATTTATT+TGG | - | tig0028916:1447-1466 | Msa1439920:CDS | 0.0% |
| !! | AATAAGTAAATAAACAAAAT+TGG | + | tig0028916:960-979 | None:intergenic | 10.0% |
| !!! | TAAAATTGATAATTAGTTAA+AGG | + | tig0028916:1813-1832 | None:intergenic | 10.0% |
| !! | AATAAGTAAATAAACAAAAT+TGG | + | tig0028916:960-979 | None:intergenic | 10.0% |
| !!! | TAAAATTGATAATTAGTTAA+AGG | + | tig0028916:1813-1832 | None:intergenic | 10.0% |
| !! | AAATAAACAAAATTGGAAAA+AGG | + | tig0028916:953-972 | None:intergenic | 15.0% |
| !!! | CATATTTTTTCTTATCAAAA+TGG | + | tig0028916:1146-1165 | None:intergenic | 15.0% |
| !!! | TGATATTTGATTGAAAATTT+TGG | - | tig0028916:1171-1190 | Msa1439920:intron | 15.0% |
| !! | TAAACTTTATTATTACCAAT+GGG | + | tig0028916:1364-1383 | None:intergenic | 15.0% |
| !! | ATAAACTTTATTATTACCAA+TGG | + | tig0028916:1365-1384 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTAATAATTGTT+AGG | - | tig0028916:1652-1671 | Msa1439920:CDS | 15.0% |
| !! | AAGTAAATAGTGAAAAAATA+TGG | + | tig0028916:1775-1794 | None:intergenic | 15.0% |
| !! | AAATAAACAAAATTGGAAAA+AGG | + | tig0028916:953-972 | None:intergenic | 15.0% |
| !!! | CATATTTTTTCTTATCAAAA+TGG | + | tig0028916:1146-1165 | None:intergenic | 15.0% |
| !!! | TGATATTTGATTGAAAATTT+TGG | - | tig0028916:1171-1190 | Msa1439920:intron | 15.0% |
| !! | TAAACTTTATTATTACCAAT+GGG | + | tig0028916:1364-1383 | None:intergenic | 15.0% |
| !! | ATAAACTTTATTATTACCAA+TGG | + | tig0028916:1365-1384 | None:intergenic | 15.0% |
| !!! | TTTTGAACTTAATAATTGTT+AGG | - | tig0028916:1652-1671 | Msa1439920:CDS | 15.0% |
| !! | AAGTAAATAGTGAAAAAATA+TGG | + | tig0028916:1775-1794 | None:intergenic | 15.0% |
| !! | TGTCTAATAAGTTCAAAATT+GGG | + | tig0028916:826-845 | None:intergenic | 20.0% |
| !! | ATGTCTAATAAGTTCAAAAT+TGG | + | tig0028916:827-846 | None:intergenic | 20.0% |
| !! | AATCCTTGATTCTAATAATT+TGG | - | tig0028916:1194-1213 | Msa1439920:intron | 20.0% |
| !! | AAACTTTATTATTACCAATG+GGG | + | tig0028916:1363-1382 | None:intergenic | 20.0% |
| !! | CTTAGTAAAAGTTAAAATCA+AGG | + | tig0028916:1416-1435 | None:intergenic | 20.0% |
| !!! | ATCAATTTTAAACTTTATGC+AGG | - | tig0028916:1823-1842 | Msa1439920:CDS | 20.0% |
| !! | TGTCTAATAAGTTCAAAATT+GGG | + | tig0028916:826-845 | None:intergenic | 20.0% |
| !! | ATGTCTAATAAGTTCAAAAT+TGG | + | tig0028916:827-846 | None:intergenic | 20.0% |
| !! | AATCCTTGATTCTAATAATT+TGG | - | tig0028916:1194-1213 | Msa1439920:intron | 20.0% |
| !! | AAACTTTATTATTACCAATG+GGG | + | tig0028916:1363-1382 | None:intergenic | 20.0% |
| !! | CTTAGTAAAAGTTAAAATCA+AGG | + | tig0028916:1416-1435 | None:intergenic | 20.0% |
| !!! | ATCAATTTTAAACTTTATGC+AGG | - | tig0028916:1823-1842 | Msa1439920:CDS | 20.0% |
| !! | CGTGATTGATAATTACTTTA+CGG | - | tig0028916:765-784 | Msa1439920:CDS | 25.0% |
| !! | GTGATTGATAATTACTTTAC+GGG | - | tig0028916:766-785 | Msa1439920:CDS | 25.0% |
| ! | ATTAAACTTGTAATGAACAG+GGG | + | tig0028916:911-930 | None:intergenic | 25.0% |
| ! | GATTAAACTTGTAATGAACA+GGG | + | tig0028916:912-931 | None:intergenic | 25.0% |
| ! | AAATTGGAAAAAGGATATGA+TGG | + | tig0028916:944-963 | None:intergenic | 25.0% |
| ! | GGATGATGTTATAAAAGTTA+TGG | - | tig0028916:1116-1135 | Msa1439920:intron | 25.0% |
| !!! | TTTTATTTATTTGGATCCCT+TGG | - | tig0028916:1456-1475 | Msa1439920:CDS | 25.0% |
| !! | TATGCATGTAGTAATGATTT+TGG | - | tig0028916:1601-1620 | Msa1439920:CDS | 25.0% |
| ! | AACTTAATAATTGTTAGGTG+AGG | - | tig0028916:1657-1676 | Msa1439920:CDS | 25.0% |
| !!! | TGCTAGAATTTTAACACATA+TGG | - | tig0028916:1682-1701 | Msa1439920:CDS | 25.0% |
| !! | CTTTCAATTTGTTTCAGATT+TGG | - | tig0028916:1898-1917 | Msa1439920:CDS | 25.0% |
| !! | CGTGATTGATAATTACTTTA+CGG | - | tig0028916:765-784 | Msa1439920:CDS | 25.0% |
| !! | GTGATTGATAATTACTTTAC+GGG | - | tig0028916:766-785 | Msa1439920:CDS | 25.0% |
| ! | ATTAAACTTGTAATGAACAG+GGG | + | tig0028916:911-930 | None:intergenic | 25.0% |
| ! | GATTAAACTTGTAATGAACA+GGG | + | tig0028916:912-931 | None:intergenic | 25.0% |
| ! | AAATTGGAAAAAGGATATGA+TGG | + | tig0028916:944-963 | None:intergenic | 25.0% |
| ! | GGATGATGTTATAAAAGTTA+TGG | - | tig0028916:1116-1135 | Msa1439920:intron | 25.0% |
| !!! | TTTTATTTATTTGGATCCCT+TGG | - | tig0028916:1456-1475 | Msa1439920:CDS | 25.0% |
| !! | TATGCATGTAGTAATGATTT+TGG | - | tig0028916:1601-1620 | Msa1439920:CDS | 25.0% |
| ! | AACTTAATAATTGTTAGGTG+AGG | - | tig0028916:1657-1676 | Msa1439920:CDS | 25.0% |
| !!! | TGCTAGAATTTTAACACATA+TGG | - | tig0028916:1682-1701 | Msa1439920:CDS | 25.0% |
| !! | CTTTCAATTTGTTTCAGATT+TGG | - | tig0028916:1898-1917 | Msa1439920:CDS | 25.0% |
| TTTCAGATTGATCTCTTGTT+TGG | + | tig0028916:378-397 | None:intergenic | 30.0% | |
| AAATAGCTATTCCAATGAGA+AGG | + | tig0028916:483-502 | None:intergenic | 30.0% | |
| ! | TTGATAATTACTTTACGGGA+AGG | - | tig0028916:770-789 | Msa1439920:intron | 30.0% |
| GAGAATGTTGTACATCATAT+TGG | - | tig0028916:796-815 | Msa1439920:intron | 30.0% | |
| TGATCAACTTCAAGAAGAAT+AGG | + | tig0028916:862-881 | None:intergenic | 30.0% | |
| GGATTAAACTTGTAATGAAC+AGG | + | tig0028916:913-932 | None:intergenic | 30.0% | |
| ! | ACTTTTATAACATCATCCGT+GGG | + | tig0028916:1114-1133 | None:intergenic | 30.0% |
| ! | AACTTTTATAACATCATCCG+TGG | + | tig0028916:1115-1134 | None:intergenic | 30.0% |
| GTGCCAAATTATTAGAATCA+AGG | + | tig0028916:1200-1219 | None:intergenic | 30.0% | |
| TGTAAGAAGTTGTTATGATG+AGG | - | tig0028916:1490-1509 | Msa1439920:CDS | 30.0% | |
| GTAAGAAGTTGTTATGATGA+GGG | - | tig0028916:1491-1510 | Msa1439920:CDS | 30.0% | |
| ! | CATGTAGTAATGATTTTGGA+TGG | - | tig0028916:1605-1624 | Msa1439920:CDS | 30.0% |
| ATAGTGAAAAAATATGGCAG+AGG | + | tig0028916:1769-1788 | None:intergenic | 30.0% | |
| TTTCAGATTGATCTCTTGTT+TGG | + | tig0028916:378-397 | None:intergenic | 30.0% | |
| AAATAGCTATTCCAATGAGA+AGG | + | tig0028916:483-502 | None:intergenic | 30.0% | |
| ! | TTGATAATTACTTTACGGGA+AGG | - | tig0028916:770-789 | Msa1439920:intron | 30.0% |
| GAGAATGTTGTACATCATAT+TGG | - | tig0028916:796-815 | Msa1439920:intron | 30.0% | |
| TGATCAACTTCAAGAAGAAT+AGG | + | tig0028916:862-881 | None:intergenic | 30.0% | |
| GGATTAAACTTGTAATGAAC+AGG | + | tig0028916:913-932 | None:intergenic | 30.0% | |
| ! | ACTTTTATAACATCATCCGT+GGG | + | tig0028916:1114-1133 | None:intergenic | 30.0% |
| ! | AACTTTTATAACATCATCCG+TGG | + | tig0028916:1115-1134 | None:intergenic | 30.0% |
| GTGCCAAATTATTAGAATCA+AGG | + | tig0028916:1200-1219 | None:intergenic | 30.0% | |
| TGTAAGAAGTTGTTATGATG+AGG | - | tig0028916:1490-1509 | Msa1439920:CDS | 30.0% | |
| GTAAGAAGTTGTTATGATGA+GGG | - | tig0028916:1491-1510 | Msa1439920:CDS | 30.0% | |
| ! | CATGTAGTAATGATTTTGGA+TGG | - | tig0028916:1605-1624 | Msa1439920:CDS | 30.0% |
| ATAGTGAAAAAATATGGCAG+AGG | + | tig0028916:1769-1788 | None:intergenic | 30.0% | |
| CTATTCCAATGAGAAGGAAA+GGG | + | tig0028916:477-496 | None:intergenic | 35.0% | |
| AAGAAAACGAAGAGTTCCAT+TGG | - | tig0028916:633-652 | Msa1439920:intron | 35.0% | |
| !! | TCTCTTGCTTTTCAATCCAA+CGG | + | tig0028916:659-678 | None:intergenic | 35.0% |
| AGTTGATCAGATCTATCACT+TGG | - | tig0028916:873-892 | Msa1439920:intron | 35.0% | |
| TGTCAGACACATATACTTGT+CGG | + | tig0028916:1038-1057 | None:intergenic | 35.0% | |
| GGACACAATACTTACACTTT+CGG | + | tig0028916:1093-1112 | None:intergenic | 35.0% | |
| GACACTAAACATGTTAGGAT+TGG | - | tig0028916:1237-1256 | Msa1439920:intron | 35.0% | |
| TTACACCTATACATCACCAA+GGG | + | tig0028916:1475-1494 | None:intergenic | 35.0% | |
| ! | CAAGAATGTGCATTGATGAT+GGG | - | tig0028916:1707-1726 | Msa1439920:CDS | 35.0% |
| ! | TAAACTTTATGCAGGCATTG+AGG | - | tig0028916:1831-1850 | Msa1439920:CDS | 35.0% |
| CTATTCCAATGAGAAGGAAA+GGG | + | tig0028916:477-496 | None:intergenic | 35.0% | |
| AAGAAAACGAAGAGTTCCAT+TGG | - | tig0028916:633-652 | Msa1439920:intron | 35.0% | |
| !! | TCTCTTGCTTTTCAATCCAA+CGG | + | tig0028916:659-678 | None:intergenic | 35.0% |
| AGTTGATCAGATCTATCACT+TGG | - | tig0028916:873-892 | Msa1439920:intron | 35.0% | |
| TGTCAGACACATATACTTGT+CGG | + | tig0028916:1038-1057 | None:intergenic | 35.0% | |
| GGACACAATACTTACACTTT+CGG | + | tig0028916:1093-1112 | None:intergenic | 35.0% | |
| GACACTAAACATGTTAGGAT+TGG | - | tig0028916:1237-1256 | Msa1439920:intron | 35.0% | |
| TTACACCTATACATCACCAA+GGG | + | tig0028916:1475-1494 | None:intergenic | 35.0% | |
| ! | CAAGAATGTGCATTGATGAT+GGG | - | tig0028916:1707-1726 | Msa1439920:CDS | 35.0% |
| ! | TAAACTTTATGCAGGCATTG+AGG | - | tig0028916:1831-1850 | Msa1439920:CDS | 35.0% |
| ! | ACGATGTGATGATGAATCTG+TGG | + | tig0028916:407-426 | None:intergenic | 40.0% |
| TTTGTTCTCGTTCTTGGAAG+AGG | + | tig0028916:436-455 | None:intergenic | 40.0% | |
| AGCATGTTTGTTCTCGTTCT+TGG | + | tig0028916:442-461 | None:intergenic | 40.0% | |
| GCTATTCCAATGAGAAGGAA+AGG | + | tig0028916:478-497 | None:intergenic | 40.0% | |
| GATGATGAATCGTGATGTTG+TGG | + | tig0028916:547-566 | None:intergenic | 40.0% | |
| AAGATGACTTCCAACGAAAC+CGG | + | tig0028916:710-729 | None:intergenic | 40.0% | |
| TTTCGTTGGAAGTCATCTTG+TGG | - | tig0028916:711-730 | Msa1439920:CDS | 40.0% | |
| GTGGATCGTTTGATTGAAAG+AGG | - | tig0028916:730-749 | Msa1439920:CDS | 40.0% | |
| ! | AAGGATATGATGGTCTTGAC+AGG | + | tig0028916:934-953 | None:intergenic | 40.0% |
| ! | TATGATCAAAAGCGCGTGTT+TGG | - | tig0028916:1009-1028 | Msa1439920:CDS | 40.0% |
| ! | AGTGTAAGTATTGTGTCCCA+CGG | - | tig0028916:1095-1114 | Msa1439920:intron | 40.0% |
| AATTTGGCACAAGACGAATG+TGG | - | tig0028916:1210-1229 | Msa1439920:intron | 40.0% | |
| ! | TTAGGATTGGCAAAGAGAGT+GGG | - | tig0028916:1250-1269 | Msa1439920:intron | 40.0% |
| ! | TTTGCTGACTAGTACAAGTG+AGG | - | tig0028916:1282-1301 | Msa1439920:intron | 40.0% |
| ACTAGTACAAGTGAGGTGTA+CGG | - | tig0028916:1289-1308 | Msa1439920:intron | 40.0% | |
| CTTACACCTATACATCACCA+AGG | + | tig0028916:1476-1495 | None:intergenic | 40.0% | |
| ! | AAAACGTGTTGCTGAGACTT+TGG | - | tig0028916:1514-1533 | Msa1439920:CDS | 40.0% |
| CCATCATCAATGCACATTCT+TGG | + | tig0028916:1709-1728 | None:intergenic | 40.0% | |
| ! | CCAAGAATGTGCATTGATGA+TGG | - | tig0028916:1706-1725 | Msa1439920:CDS | 40.0% |
| ! | AAGGATCCATTGACTGTCTA+TGG | - | tig0028916:1854-1873 | Msa1439920:CDS | 40.0% |
| ! | ACGATGTGATGATGAATCTG+TGG | + | tig0028916:407-426 | None:intergenic | 40.0% |
| TTTGTTCTCGTTCTTGGAAG+AGG | + | tig0028916:436-455 | None:intergenic | 40.0% | |
| AGCATGTTTGTTCTCGTTCT+TGG | + | tig0028916:442-461 | None:intergenic | 40.0% | |
| GCTATTCCAATGAGAAGGAA+AGG | + | tig0028916:478-497 | None:intergenic | 40.0% | |
| GATGATGAATCGTGATGTTG+TGG | + | tig0028916:547-566 | None:intergenic | 40.0% | |
| AAGATGACTTCCAACGAAAC+CGG | + | tig0028916:710-729 | None:intergenic | 40.0% | |
| TTTCGTTGGAAGTCATCTTG+TGG | - | tig0028916:711-730 | Msa1439920:CDS | 40.0% | |
| GTGGATCGTTTGATTGAAAG+AGG | - | tig0028916:730-749 | Msa1439920:CDS | 40.0% | |
| ! | AAGGATATGATGGTCTTGAC+AGG | + | tig0028916:934-953 | None:intergenic | 40.0% |
| ! | TATGATCAAAAGCGCGTGTT+TGG | - | tig0028916:1009-1028 | Msa1439920:CDS | 40.0% |
| ! | AGTGTAAGTATTGTGTCCCA+CGG | - | tig0028916:1095-1114 | Msa1439920:intron | 40.0% |
| AATTTGGCACAAGACGAATG+TGG | - | tig0028916:1210-1229 | Msa1439920:intron | 40.0% | |
| ! | TTAGGATTGGCAAAGAGAGT+GGG | - | tig0028916:1250-1269 | Msa1439920:intron | 40.0% |
| ! | TTTGCTGACTAGTACAAGTG+AGG | - | tig0028916:1282-1301 | Msa1439920:intron | 40.0% |
| ACTAGTACAAGTGAGGTGTA+CGG | - | tig0028916:1289-1308 | Msa1439920:intron | 40.0% | |
| CTTACACCTATACATCACCA+AGG | + | tig0028916:1476-1495 | None:intergenic | 40.0% | |
| ! | AAAACGTGTTGCTGAGACTT+TGG | - | tig0028916:1514-1533 | Msa1439920:CDS | 40.0% |
| CCATCATCAATGCACATTCT+TGG | + | tig0028916:1709-1728 | None:intergenic | 40.0% | |
| ! | CCAAGAATGTGCATTGATGA+TGG | - | tig0028916:1706-1725 | Msa1439920:CDS | 40.0% |
| ! | AAGGATCCATTGACTGTCTA+TGG | - | tig0028916:1854-1873 | Msa1439920:CDS | 40.0% |
| !! | GAGATAGTGGAAGAAGAGAG+TGG | + | tig0028916:506-525 | None:intergenic | 45.0% |
| ATCGTGATGTTGTGGAAGAG+TGG | + | tig0028916:539-558 | None:intergenic | 45.0% | |
| ! | CTTTTCAATCCAACGGCCAA+TGG | + | tig0028916:652-671 | None:intergenic | 45.0% |
| ! | CAAGAGACAGAAGAGAGTAC+TGG | - | tig0028916:672-691 | Msa1439920:intron | 45.0% |
| !! | CAGAAGAGAGTACTGGTTAC+CGG | - | tig0028916:679-698 | Msa1439920:intron | 45.0% |
| TGTAATGAACAGGGGAAGCA+GGG | + | tig0028916:903-922 | None:intergenic | 45.0% | |
| TTGTAATGAACAGGGGAAGC+AGG | + | tig0028916:904-923 | None:intergenic | 45.0% | |
| GTGGGGACACTAAACATGTT+AGG | - | tig0028916:1232-1251 | Msa1439920:intron | 45.0% | |
| ! | GTTAGGATTGGCAAAGAGAG+TGG | - | tig0028916:1249-1268 | Msa1439920:intron | 45.0% |
| TCAGCTTGAGGATGTTGAAG+TGG | + | tig0028916:1319-1338 | None:intergenic | 45.0% | |
| ATCCTCAAGCTGAGACTTAC+TGG | - | tig0028916:1326-1345 | Msa1439920:intron | 45.0% | |
| TCCTCAAGCTGAGACTTACT+GGG | - | tig0028916:1327-1346 | Msa1439920:intron | 45.0% | |
| !! | TGGATCCCTTGGTGATGTAT+AGG | - | tig0028916:1467-1486 | Msa1439920:CDS | 45.0% |
| TGTTGCTGAGACTTTGGCTA+TGG | - | tig0028916:1520-1539 | Msa1439920:CDS | 45.0% | |
| ! | TTGGCTATGGATTACCACAG+AGG | - | tig0028916:1533-1552 | Msa1439920:CDS | 45.0% |
| !! | CTTTATGCAGGCATTGAGGA+AGG | - | tig0028916:1835-1854 | Msa1439920:CDS | 45.0% |
| ! | CATTGACTGTCTATGGCGAT+GGG | - | tig0028916:1861-1880 | Msa1439920:CDS | 45.0% |
| !! | GAGATAGTGGAAGAAGAGAG+TGG | + | tig0028916:506-525 | None:intergenic | 45.0% |
| ATCGTGATGTTGTGGAAGAG+TGG | + | tig0028916:539-558 | None:intergenic | 45.0% | |
| ! | CTTTTCAATCCAACGGCCAA+TGG | + | tig0028916:652-671 | None:intergenic | 45.0% |
| ! | CAAGAGACAGAAGAGAGTAC+TGG | - | tig0028916:672-691 | Msa1439920:intron | 45.0% |
| !! | CAGAAGAGAGTACTGGTTAC+CGG | - | tig0028916:679-698 | Msa1439920:intron | 45.0% |
| TGTAATGAACAGGGGAAGCA+GGG | + | tig0028916:903-922 | None:intergenic | 45.0% | |
| TTGTAATGAACAGGGGAAGC+AGG | + | tig0028916:904-923 | None:intergenic | 45.0% | |
| GTGGGGACACTAAACATGTT+AGG | - | tig0028916:1232-1251 | Msa1439920:intron | 45.0% | |
| ! | GTTAGGATTGGCAAAGAGAG+TGG | - | tig0028916:1249-1268 | Msa1439920:intron | 45.0% |
| TCAGCTTGAGGATGTTGAAG+TGG | + | tig0028916:1319-1338 | None:intergenic | 45.0% | |
| ATCCTCAAGCTGAGACTTAC+TGG | - | tig0028916:1326-1345 | Msa1439920:intron | 45.0% | |
| TCCTCAAGCTGAGACTTACT+GGG | - | tig0028916:1327-1346 | Msa1439920:intron | 45.0% | |
| !! | TGGATCCCTTGGTGATGTAT+AGG | - | tig0028916:1467-1486 | Msa1439920:CDS | 45.0% |
| TGTTGCTGAGACTTTGGCTA+TGG | - | tig0028916:1520-1539 | Msa1439920:CDS | 45.0% | |
| ! | TTGGCTATGGATTACCACAG+AGG | - | tig0028916:1533-1552 | Msa1439920:CDS | 45.0% |
| !! | CTTTATGCAGGCATTGAGGA+AGG | - | tig0028916:1835-1854 | Msa1439920:CDS | 45.0% |
| ! | CATTGACTGTCTATGGCGAT+GGG | - | tig0028916:1861-1880 | Msa1439920:CDS | 45.0% |
| CGAGTCCCTTTCCTTCTCAT+TGG | - | tig0028916:469-488 | Msa1439920:intron | 50.0% | |
| TGGATCGAGAAGGGAGATAG+TGG | + | tig0028916:519-538 | None:intergenic | 50.0% | |
| GTGGAAGAGTGGATCGAGAA+GGG | + | tig0028916:528-547 | None:intergenic | 50.0% | |
| TGTGGAAGAGTGGATCGAGA+AGG | + | tig0028916:529-548 | None:intergenic | 50.0% | |
| CCGAGTCGGAAGAGTTAACT+CGG | + | tig0028916:581-600 | None:intergenic | 50.0% | |
| CCGAGTTAACTCTTCCGACT+CGG | - | tig0028916:578-597 | Msa1439920:intron | 50.0% | |
| !! | AGTTAACTCTTCCGACTCGG+CGG | - | tig0028916:581-600 | Msa1439920:intron | 50.0% |
| CGGGTTCTGTTAGAGGAACA+CGG | - | tig0028916:601-620 | Msa1439920:intron | 50.0% | |
| !! | AAGAGAGTACTGGTTACCGG+TGG | - | tig0028916:682-701 | Msa1439920:intron | 50.0% |
| TTGGCACAAGACGAATGTGG+TGG | - | tig0028916:1213-1232 | Msa1439920:intron | 50.0% | |
| TGGCACAAGACGAATGTGGT+GGG | - | tig0028916:1214-1233 | Msa1439920:intron | 50.0% | |
| CCTCAAGCTGAGACTTACTG+GGG | - | tig0028916:1328-1347 | Msa1439920:intron | 50.0% | |
| CTCAAGCTGAGACTTACTGG+GGG | - | tig0028916:1329-1348 | Msa1439920:intron | 50.0% | |
| TGGGGGAATGTTAACCCCAT+TGG | - | tig0028916:1346-1365 | Msa1439920:CDS | 50.0% | |
| ! | ATGGATTACCACAGAGGAGC+TGG | - | tig0028916:1539-1558 | Msa1439920:CDS | 50.0% |
| GGTCAGTAACTTCGTTGCTC+AGG | - | tig0028916:1735-1754 | Msa1439920:CDS | 50.0% | |
| CCATCGCCATAGACAGTCAA+TGG | + | tig0028916:1863-1882 | None:intergenic | 50.0% | |
| ! | CCATTGACTGTCTATGGCGA+TGG | - | tig0028916:1860-1879 | Msa1439920:CDS | 50.0% |
| CGAGTCCCTTTCCTTCTCAT+TGG | - | tig0028916:469-488 | Msa1439920:intron | 50.0% | |
| TGGATCGAGAAGGGAGATAG+TGG | + | tig0028916:519-538 | None:intergenic | 50.0% | |
| GTGGAAGAGTGGATCGAGAA+GGG | + | tig0028916:528-547 | None:intergenic | 50.0% | |
| TGTGGAAGAGTGGATCGAGA+AGG | + | tig0028916:529-548 | None:intergenic | 50.0% | |
| CCGAGTCGGAAGAGTTAACT+CGG | + | tig0028916:581-600 | None:intergenic | 50.0% | |
| CCGAGTTAACTCTTCCGACT+CGG | - | tig0028916:578-597 | Msa1439920:intron | 50.0% | |
| !! | AGTTAACTCTTCCGACTCGG+CGG | - | tig0028916:581-600 | Msa1439920:intron | 50.0% |
| CGGGTTCTGTTAGAGGAACA+CGG | - | tig0028916:601-620 | Msa1439920:intron | 50.0% | |
| !! | AAGAGAGTACTGGTTACCGG+TGG | - | tig0028916:682-701 | Msa1439920:intron | 50.0% |
| TTGGCACAAGACGAATGTGG+TGG | - | tig0028916:1213-1232 | Msa1439920:intron | 50.0% | |
| TGGCACAAGACGAATGTGGT+GGG | - | tig0028916:1214-1233 | Msa1439920:intron | 50.0% | |
| CCTCAAGCTGAGACTTACTG+GGG | - | tig0028916:1328-1347 | Msa1439920:intron | 50.0% | |
| CTCAAGCTGAGACTTACTGG+GGG | - | tig0028916:1329-1348 | Msa1439920:intron | 50.0% | |
| TGGGGGAATGTTAACCCCAT+TGG | - | tig0028916:1346-1365 | Msa1439920:CDS | 50.0% | |
| ! | ATGGATTACCACAGAGGAGC+TGG | - | tig0028916:1539-1558 | Msa1439920:CDS | 50.0% |
| GGTCAGTAACTTCGTTGCTC+AGG | - | tig0028916:1735-1754 | Msa1439920:CDS | 50.0% | |
| CCATCGCCATAGACAGTCAA+TGG | + | tig0028916:1863-1882 | None:intergenic | 50.0% | |
| ! | CCATTGACTGTCTATGGCGA+TGG | - | tig0028916:1860-1879 | Msa1439920:CDS | 50.0% |
| !! | GTTAACTCTTCCGACTCGGC+GGG | - | tig0028916:582-601 | Msa1439920:intron | 55.0% |
| TCTAACAGAACCCGCCGAGT+CGG | + | tig0028916:595-614 | None:intergenic | 55.0% | |
| CGAAGAGTTCCATTGGCCGT+TGG | - | tig0028916:640-659 | Msa1439920:intron | 55.0% | |
| GGCACAAGACGAATGTGGTG+GGG | - | tig0028916:1215-1234 | Msa1439920:intron | 55.0% | |
| CCCCAGTAAGTCTCAGCTTG+AGG | + | tig0028916:1331-1350 | None:intergenic | 55.0% | |
| !! | GTGCATTGATGATGGGCGTG+TGG | - | tig0028916:1714-1733 | Msa1439920:CDS | 55.0% |
| !! | GTTAACTCTTCCGACTCGGC+GGG | - | tig0028916:582-601 | Msa1439920:intron | 55.0% |
| TCTAACAGAACCCGCCGAGT+CGG | + | tig0028916:595-614 | None:intergenic | 55.0% | |
| CGAAGAGTTCCATTGGCCGT+TGG | - | tig0028916:640-659 | Msa1439920:intron | 55.0% | |
| GGCACAAGACGAATGTGGTG+GGG | - | tig0028916:1215-1234 | Msa1439920:intron | 55.0% | |
| CCCCAGTAAGTCTCAGCTTG+AGG | + | tig0028916:1331-1350 | None:intergenic | 55.0% | |
| !! | GTGCATTGATGATGGGCGTG+TGG | - | tig0028916:1714-1733 | Msa1439920:CDS | 55.0% |
| ! | GACTCGGCGGGTTCTGTTAG+AGG | - | tig0028916:594-613 | Msa1439920:intron | 60.0% |
| !! | GTACTGGTTACCGGTGGAGC+CGG | - | tig0028916:688-707 | Msa1439920:intron | 60.0% |
| ! | TCCAACGAAACCGGCTCCAC+CGG | + | tig0028916:701-720 | None:intergenic | 60.0% |
| CCTCAATGCCAGCTCCTCTG+TGG | + | tig0028916:1550-1569 | None:intergenic | 60.0% | |
| CCACAGAGGAGCTGGCATTG+AGG | - | tig0028916:1547-1566 | Msa1439920:CDS | 60.0% | |
| ! | GACTCGGCGGGTTCTGTTAG+AGG | - | tig0028916:594-613 | Msa1439920:intron | 60.0% |
| !! | GTACTGGTTACCGGTGGAGC+CGG | - | tig0028916:688-707 | Msa1439920:intron | 60.0% |
| ! | TCCAACGAAACCGGCTCCAC+CGG | + | tig0028916:701-720 | None:intergenic | 60.0% |
| CCTCAATGCCAGCTCCTCTG+TGG | + | tig0028916:1550-1569 | None:intergenic | 60.0% | |
| CCACAGAGGAGCTGGCATTG+AGG | - | tig0028916:1547-1566 | Msa1439920:CDS | 60.0% | |
| ! | ACCGGTGGAGCCGGTTTCGT+TGG | - | tig0028916:697-716 | Msa1439920:intron | 65.0% |
| ! | ACCGGTGGAGCCGGTTTCGT+TGG | - | tig0028916:697-716 | Msa1439920:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028916 | gene | 349 | 1925 | 349 | ID=Msa1439920;Name=Msa1439920 |
| tig0028916 | mRNA | 349 | 1925 | 349 | ID=Msa1439920-mRNA-1;Parent=Msa1439920;Name=Msa1439920-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|319 |
| tig0028916 | exon | 1341 | 1925 | 1341 | ID=Msa1439920-mRNA-1:exon:12051;Parent=Msa1439920-mRNA-1 |
| tig0028916 | exon | 907 | 1051 | 907 | ID=Msa1439920-mRNA-1:exon:12050;Parent=Msa1439920-mRNA-1 |
| tig0028916 | exon | 706 | 785 | 706 | ID=Msa1439920-mRNA-1:exon:12049;Parent=Msa1439920-mRNA-1 |
| tig0028916 | exon | 518 | 586 | 518 | ID=Msa1439920-mRNA-1:exon:12048;Parent=Msa1439920-mRNA-1 |
| tig0028916 | exon | 349 | 429 | 349 | ID=Msa1439920-mRNA-1:exon:12047;Parent=Msa1439920-mRNA-1 |
| tig0028916 | CDS | 1341 | 1925 | 1341 | ID=Msa1439920-mRNA-1:cds;Parent=Msa1439920-mRNA-1 |
| tig0028916 | CDS | 907 | 1051 | 907 | ID=Msa1439920-mRNA-1:cds;Parent=Msa1439920-mRNA-1 |
| tig0028916 | CDS | 706 | 785 | 706 | ID=Msa1439920-mRNA-1:cds;Parent=Msa1439920-mRNA-1 |
| tig0028916 | CDS | 518 | 586 | 518 | ID=Msa1439920-mRNA-1:cds;Parent=Msa1439920-mRNA-1 |
| tig0028916 | CDS | 349 | 429 | 349 | ID=Msa1439920-mRNA-1:cds;Parent=Msa1439920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
