AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0209510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209510 MtrunA17_Chr2g0306801 89.572 374 8 2 1 343 1 374 0.0 690
Msa0209510 MtrunA17_Chr1g0165131 36.503 326 168 8 26 321 79 395 3.91e-55 185
Msa0209510 MtrunA17_Chr4g0067351 35.235 298 163 9 26 302 142 430 1.53e-42 154
Msa0209510 MtrunA17_Chr6g0488051 30.699 329 202 8 26 341 65 380 5.76e-42 150
Msa0209510 MtrunA17_Chr2g0295951 33.779 299 166 8 26 302 144 432 1.47e-41 152
Msa0209510 MtrunA17_Chr1g0211591 35.270 241 128 6 46 259 1 240 2.10e-39 140
Msa0209510 MtrunA17_Chr3g0082021 32.515 326 155 12 25 300 255 565 7.03e-35 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209510 AT1G04870.2 65.922 358 91 2 17 343 26 383 3.55e-180 504
Msa0209510 AT1G04870.1 59.643 280 82 2 95 343 1 280 1.35e-124 359
Msa0209510 AT3G20020.1 34.104 346 169 8 26 321 83 419 7.96e-53 180
Msa0209510 AT3G20020.3 34.104 346 169 8 26 321 83 419 9.67e-53 180
Msa0209510 AT3G20020.2 33.433 335 164 9 26 321 83 397 2.78e-48 167
Msa0209510 AT4G29510.1 32.188 320 196 6 26 333 72 382 2.54e-45 159
Msa0209510 AT2G19670.1 31.494 308 190 6 26 321 48 346 4.03e-44 155
Msa0209510 AT3G06930.2 33.436 326 182 11 2 302 121 436 2.71e-42 154
Msa0209510 AT3G06930.1 33.436 326 182 11 2 302 121 436 2.87e-42 154
Msa0209510 AT5G49020.1 34.899 298 164 10 26 302 151 439 7.18e-41 150
Msa0209510 AT5G49020.2 34.899 298 164 10 26 302 149 437 7.43e-41 150
Msa0209510 AT3G12270.1 33.125 320 156 10 25 304 244 545 1.17e-36 139

Find 125 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCCTACAATAAGGTTTC+AGG 0.177563 2_1:+48148378 None:intergenic
ATCGAACTGTACGGTTATTA+AGG 0.177944 2_1:-48148711 Msa0209510:three_prime_UTR
GAAATTTGTGTAGGTTGTTT+TGG 0.274614 2_1:-48153004 Msa0209510:intron
TGTACAACAGTTATTTCTTT+TGG 0.275267 2_1:-48148405 Msa0209510:three_prime_UTR
ATTAGCGTAGTCGACTTCTT+TGG 0.288507 2_1:+48153209 None:intergenic
GATGGTTTGATGTACATTTC+CGG 0.296354 2_1:-48149763 Msa0209510:CDS
TTCTACTATCCCAGTCCTAA+TGG 0.297541 2_1:+48150866 None:intergenic
TTAGCGTAGTCGACTTCTTT+GGG 0.302924 2_1:+48153210 None:intergenic
ATGGTTTGATGTACATTTCC+GGG 0.345706 2_1:-48149762 Msa0209510:intron
TCTACTCTAATCCTACAATA+AGG 0.346144 2_1:+48148371 None:intergenic
ACTTGGTTCTTCCGATCATT+TGG 0.354708 2_1:-48148634 Msa0209510:three_prime_UTR
GATGAAACAAAAGCCTTCTA+TGG 0.355790 2_1:-48150792 Msa0209510:CDS
AACACAAAACTGTGTGGATA+TGG 0.358771 2_1:-48149788 Msa0209510:CDS
CAACCCTGAAACCTTATTGT+AGG 0.361894 2_1:-48148382 Msa0209510:three_prime_UTR
TACCCTACTATCCTCTTTAT+CGG 0.365718 2_1:-48148337 Msa0209510:three_prime_UTR
GAAGGGAAACCATCGTTTAA+TGG 0.372426 2_1:-48149180 Msa0209510:CDS
AACGCCGCCGCTGGTGGCCG+AGG 0.392661 2_1:-48153243 Msa0209510:CDS
TCGAACTGTACGGTTATTAA+GGG 0.392893 2_1:-48148710 Msa0209510:three_prime_UTR
TTGGATGTTGGTGCTGGAAG+TGG 0.397747 2_1:-48152985 Msa0209510:CDS
CTGTGAGATTCAAAAGCATT+CGG 0.404202 2_1:-48149144 Msa0209510:CDS
GCTCATATCAACACCATAGA+AGG 0.404592 2_1:+48150779 None:intergenic
TCAGGATTGGTTTGGCGGTA+GGG 0.411845 2_1:+48153331 None:intergenic
ACAAGCTTTGCTTGAAAGTC+GGG 0.412753 2_1:+48148529 None:intergenic
GCACCGATAAAGAGGATAGT+AGG 0.413072 2_1:+48148334 None:intergenic
TCATTAGAAAATTAACAGTT+AGG 0.423281 2_1:+48149210 None:intergenic
ATTTATTGATTATTTAATTG+TGG 0.425146 2_1:-48148457 Msa0209510:three_prime_UTR
ACTATCCTCTTTATCGGTGC+AGG 0.431454 2_1:-48148331 Msa0209510:three_prime_UTR
CAGGTTGTTGAGGTTATTGA+GGG 0.437694 2_1:-48152853 Msa0209510:intron
CGTTTAATGGAGGTTGAGCT+TGG 0.443414 2_1:-48149167 Msa0209510:CDS
CTTCATCCACATCAAGTCAT+AGG 0.443890 2_1:-48149908 Msa0209510:CDS
AATCCTACAATAAGGTTTCA+GGG 0.448390 2_1:+48148379 None:intergenic
TCTACTATCCCAGTCCTAAT+GGG 0.449075 2_1:+48150867 None:intergenic
TGGATGTTGGTGCTGGAAGT+GGG 0.452123 2_1:-48152984 Msa0209510:CDS
GAAGTGGGATTCTTGCTATA+TGG 0.455599 2_1:-48152969 Msa0209510:CDS
GCATGTGGATGGCACCCATT+AGG 0.455721 2_1:-48150881 Msa0209510:CDS
GCAGGTTGTTGAGGTTATTG+AGG 0.459237 2_1:-48152854 Msa0209510:CDS
GACCGCTGGCTCAAACCAAC+AGG 0.460638 2_1:-48151916 Msa0209510:CDS
AACTCAATCTCATGTTCAGC+TGG 0.461498 2_1:+48149646 None:intergenic
GTCAGGATTGGTTTGGCGGT+AGG 0.462470 2_1:+48153330 None:intergenic
TCATATGTGCTCGTGACCGC+TGG 0.468854 2_1:-48151930 Msa0209510:CDS
TAAAACCTGCACCGATAAAG+AGG 0.471394 2_1:+48148326 None:intergenic
TGTGAGATTCAAAAGCATTC+GGG 0.473426 2_1:-48149143 Msa0209510:CDS
CTTTGGGGACGGCGGTGCCT+CGG 0.475277 2_1:+48153226 None:intergenic
TTTATTGATTATTTAATTGT+GGG 0.477910 2_1:-48148456 Msa0209510:three_prime_UTR
GGGCGATTACCAGTCAGCTA+TGG 0.480043 2_1:-48150835 Msa0209510:CDS
AGCTCAAGCAGGTGCAAAGA+AGG 0.480270 2_1:-48152944 Msa0209510:CDS
CTGTACACACTGGGGTCAGC+AGG 0.481201 2_1:-48149599 Msa0209510:intron
CTTGAAGCTCCGCGAACAAA+GGG 0.482804 2_1:+48149067 None:intergenic
TTAGGTCAGGATTGGTTTGG+CGG 0.494154 2_1:+48153326 None:intergenic
TACAAGCTTTGCTTGAAAGT+CGG 0.495762 2_1:+48148528 None:intergenic
CAGCATTATTCAGTGATGGT+TGG 0.501524 2_1:-48148576 Msa0209510:three_prime_UTR
TGGGATAGTAGAACAAAAGT+TGG 0.503612 2_1:-48150856 Msa0209510:CDS
ACCAGTCAGCTATGGGCGAT+TGG 0.509747 2_1:-48150827 Msa0209510:CDS
CATCAAGTCATAGGAACTGC+TGG 0.510644 2_1:-48149899 Msa0209510:CDS
TCTTCCGAAAACGCCGCCGC+TGG 0.511121 2_1:-48153252 Msa0209510:CDS
CTCCTGTTGGTTTGAGCCAG+CGG 0.511819 2_1:+48151914 None:intergenic
GGTGCCTCGGCCACCAGCGG+CGG 0.514143 2_1:+48153239 None:intergenic
TCCGAAAACGCCGCCGCTGG+TGG 0.516593 2_1:-48153249 Msa0209510:CDS
AATACTTACATCACTCCTGT+TGG 0.521476 2_1:+48151901 None:intergenic
AGTTTAGATCCCTTTGTTCG+CGG 0.523872 2_1:-48149076 Msa0209510:three_prime_UTR
TGGATGGCACCCATTAGGAC+TGG 0.527259 2_1:-48150876 Msa0209510:CDS
TGTTATCATCTCTGAATGGA+TGG 0.530239 2_1:-48151989 Msa0209510:CDS
GGCGATTACCAGTCAGCTAT+GGG 0.531624 2_1:-48150834 Msa0209510:CDS
TACTAACCTTGTCTTTAAAG+TGG 0.532555 2_1:+48153088 None:intergenic
TGTTTACAGAAGAAAGCAGT+TGG 0.534384 2_1:-48148670 Msa0209510:three_prime_UTR
GCCAATCGCCCATAGCTGAC+TGG 0.534934 2_1:+48150826 None:intergenic
GCTCTCAGATCGTGTTCGTA+TGG 0.535538 2_1:-48153145 Msa0209510:CDS
TGTTCAGCATTATTCAGTGA+TGG 0.540471 2_1:-48148580 Msa0209510:three_prime_UTR
TTTCTAATGAGTCGCTCGAA+GGG 0.540973 2_1:-48149197 Msa0209510:CDS
GGCGGTGCCTCGGCCACCAG+CGG 0.543715 2_1:+48153236 None:intergenic
TAATCTTGAGCAGGTTGTTG+AGG 0.544159 2_1:-48152863 Msa0209510:CDS
TTCAATCTTATCGAACTGTA+CGG 0.544210 2_1:-48148720 Msa0209510:three_prime_UTR
AGGAACTGCTGGTCTAGTAA+AGG 0.544394 2_1:-48149888 Msa0209510:CDS
GAAATCGAATAATCTTGAGC+AGG 0.548053 2_1:-48152872 Msa0209510:CDS
GCTATATGGTCAGCTCAAGC+AGG 0.548853 2_1:-48152955 Msa0209510:CDS
GCTTGAAGCTCCGCGAACAA+AGG 0.549951 2_1:+48149066 None:intergenic
GGGATAGTAGAACAAAAGTT+GGG 0.555999 2_1:-48150855 Msa0209510:CDS
CCATCACTCACATGTGTAGG+AGG 0.557201 2_1:+48149239 None:intergenic
AATAACTGTTGTACAATGGA+AGG 0.559071 2_1:+48148413 None:intergenic
GATAAAGAGGATAGTAGGGT+AGG 0.565436 2_1:+48148339 None:intergenic
TAGTCATGCTCGCATGTGGA+TGG 0.569852 2_1:-48150892 Msa0209510:CDS
TTGGTGATAGAGAAAGGAGT+AGG 0.571481 2_1:+48153176 None:intergenic
GTTTAAAGAGCAATAAATAA+CGG 0.572222 2_1:-48153367 None:intergenic
AAGAAATAACTGTTGTACAA+TGG 0.572673 2_1:+48148409 None:intergenic
GTGTGACATGTGACTCATAA+GGG 0.575699 2_1:-48148607 Msa0209510:three_prime_UTR
ATCCACATGCGAGCATGACT+AGG 0.578485 2_1:+48150894 None:intergenic
CACCGATAAAGAGGATAGTA+GGG 0.580081 2_1:+48148335 None:intergenic
GGATGGCACCCATTAGGACT+GGG 0.582000 2_1:-48150875 Msa0209510:CDS
TAGCGTAGTCGACTTCTTTG+GGG 0.583467 2_1:+48153211 None:intergenic
TGGTTGGATAAACCTCGTAT+TGG 0.584299 2_1:-48148560 Msa0209510:three_prime_UTR
ATCCTAGTCATGCTCGCATG+TGG 0.586013 2_1:-48150896 Msa0209510:CDS
TGCTTACCAGGGACGAAGTG+AGG 0.588452 2_1:-48149671 Msa0209510:intron
TGTAGATTACTGTACACACT+GGG 0.591513 2_1:-48149608 Msa0209510:CDS
ATAAAGAGGATAGTAGGGTA+GGG 0.591600 2_1:+48148340 None:intergenic
GTCACACACAACCAAATGAT+CGG 0.593130 2_1:+48148623 None:intergenic
TGTGTGACATGTGACTCATA+AGG 0.598160 2_1:-48148608 Msa0209510:three_prime_UTR
AATTTCTGTAGACATCGTTG+TGG 0.599319 2_1:-48149937 Msa0209510:intron
CAAACACCACTTTAAAGACA+AGG 0.601109 2_1:-48153094 Msa0209510:intron
TTGATGTTATCATCTCTGAA+TGG 0.604535 2_1:-48151993 Msa0209510:CDS
TGCCACAGTGGCAGACATAG+AGG 0.605748 2_1:-48149849 Msa0209510:CDS
GTGTAGATTACTGTACACAC+TGG 0.606301 2_1:-48149609 Msa0209510:CDS
TTCCTCTATGTCTGCCACTG+TGG 0.607325 2_1:+48149847 None:intergenic
GTAGTCGACTTCTTTGGGGA+CGG 0.618495 2_1:+48153215 None:intergenic
GGTTCTTACTCACTCAGCGG+TGG 0.619536 2_1:+48153284 None:intergenic
TGTTGAAGCTACTAAGATGT+CGG 0.627273 2_1:-48152914 Msa0209510:CDS
CATGTGTAGGAGGATTTAAG+AGG 0.628125 2_1:+48149249 None:intergenic
TCACCATCACTCACATGTGT+AGG 0.628712 2_1:+48149236 None:intergenic
GGGAAACCATCGTTTAATGG+AGG 0.633476 2_1:-48149177 Msa0209510:CDS
GTCGACTTCTTTGGGGACGG+CGG 0.634616 2_1:+48153218 None:intergenic
GCTGAGTGAGTAAGAACCAT+GGG 0.636916 2_1:-48153279 Msa0209510:exon
ACAAAACTGTGTGGATATGG+AGG 0.645737 2_1:-48149785 Msa0209510:CDS
TGTGTACAGTAATCTACACT+AGG 0.645957 2_1:+48149613 None:intergenic
GCAGTTCCTATGACTTGATG+TGG 0.646015 2_1:+48149902 None:intergenic
CGCTGAGTGAGTAAGAACCA+TGG 0.649117 2_1:-48153280 Msa0209510:exon
GTAATCTACACTAGGAGCGG+TGG 0.661333 2_1:+48149621 None:intergenic
GTTATCATCTCTGAATGGAT+GGG 0.664829 2_1:-48151988 Msa0209510:CDS
AACTGTGTGGATATGGAGGA+TGG 0.669225 2_1:-48149781 Msa0209510:CDS
GAGCTTCAAGCAGTATCCCA+CGG 0.678692 2_1:-48149054 Msa0209510:intron
GCTCAACCTCCATTAAACGA+TGG 0.680084 2_1:+48149171 None:intergenic
CCTCCTACACATGTGAGTGA+TGG 0.685198 2_1:-48149239 Msa0209510:CDS
CATGGTTCTTACTCACTCAG+CGG 0.701342 2_1:+48153281 None:intergenic
ACAGTAATCTACACTAGGAG+CGG 0.702438 2_1:+48149618 None:intergenic
ACAGAGAACACAAAACTGTG+TGG 0.712011 2_1:-48149794 Msa0209510:CDS
TGACTGTTTGACTGCCACAG+TGG 0.774647 2_1:-48149861 Msa0209510:CDS
GTAGATTACTGTACACACTG+GGG 0.847696 2_1:-48149607 Msa0209510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAGAATATTTCAAAA+AGG - chr2_1:48149238-48149257 Msa0209510:CDS 10.0%
!!! ATAAGAAAATATTGTTTTTT+CGG - chr2_1:48149410-48149429 Msa0209510:intron 10.0%
!!! ATTTATTGATTATTTAATTG+TGG - chr2_1:48153199-48153218 Msa0209510:CDS 10.0%
!!! TTTATTGATTATTTAATTGT+GGG - chr2_1:48153200-48153219 Msa0209510:CDS 10.0%
!! TTATTAAGTGGTTAAATATA+GGG - chr2_1:48149324-48149343 Msa0209510:intron 15.0%
!! TTAACCATAAATTATCAATT+TGG + chr2_1:48149351-48149370 None:intergenic 15.0%
!!! TAAGAAAATATTGTTTTTTC+GGG - chr2_1:48149411-48149430 Msa0209510:intron 15.0%
!! AACATTTAACAATTCATATA+AGG + chr2_1:48149580-48149599 None:intergenic 15.0%
!! TTATATGAATTGTTAAATGT+TGG - chr2_1:48149579-48149598 Msa0209510:intron 15.0%
!! TATACTATATATGAAAAATG+TGG - chr2_1:48149949-48149968 Msa0209510:intron 15.0%
!!! ATATAGTACTTATTTTTGAA+AGG + chr2_1:48152552-48152571 None:intergenic 15.0%
!! TATTGATAAGAAATTTGTGT+AGG - chr2_1:48148643-48148662 Msa0209510:three_prime_UTR 20.0%
!!! TGTTATGATATTTGATAATG+CGG - chr2_1:48149115-48149134 Msa0209510:CDS 20.0%
!! AGTAAAATTTGACAAAATCA+AGG + chr2_1:48149265-48149284 None:intergenic 20.0%
!! GTTATTAAGTGGTTAAATAT+AGG - chr2_1:48149323-48149342 Msa0209510:intron 20.0%
!!! TATTTTCTTATAATAGTGAC+CGG + chr2_1:48149401-48149420 None:intergenic 20.0%
!!! TCTTTAGTTTTCAATAGAAT+AGG - chr2_1:48150061-48150080 Msa0209510:intron 20.0%
!!! CTTTAGTTTTCAATAGAATA+GGG - chr2_1:48150062-48150081 Msa0209510:intron 20.0%
!!! ATTTTTACATTGACTTAACA+TGG - chr2_1:48150533-48150552 Msa0209510:intron 20.0%
!!! GTTACATAGAATTTTTGTTA+TGG - chr2_1:48150993-48151012 Msa0209510:intron 20.0%
!! TTCATTAATGATACTTCAAT+GGG - chr2_1:48151556-48151575 Msa0209510:intron 20.0%
!! AGCAATTTGAATATTAATGA+AGG - chr2_1:48152147-48152166 Msa0209510:intron 20.0%
!!! TAGTGTAATGTTTTAATCAT+TGG - chr2_1:48152375-48152394 Msa0209510:intron 20.0%
!! TCATTAGAAAATTAACAGTT+AGG + chr2_1:48152449-48152468 None:intergenic 20.0%
!!! AAGACATTTTTTTAATACTG+AGG - chr2_1:48152749-48152768 Msa0209510:intron 20.0%
!!! AGACATTTTTTTAATACTGA+GGG - chr2_1:48152750-48152769 Msa0209510:intron 20.0%
!!! TTTGATTTTCTTTTTTGAAC+AGG - chr2_1:48152895-48152914 Msa0209510:CDS 20.0%
!!! TTTTATTTTGAGAAGGAAAT+AGG - chr2_1:48153348-48153367 Msa0209510:five_prime_UTR 20.0%
!!! TTTATTTTGAGAAGGAAATA+GGG - chr2_1:48153349-48153368 Msa0209510:five_prime_UTR 20.0%
!!! TAGTTCTAGTTTAAGTTGTA+AGG - chr2_1:48148879-48148898 Msa0209510:intron 25.0%
!!! TTTAAGTTGTAAGGTTTTAG+AGG - chr2_1:48148888-48148907 Msa0209510:intron 25.0%
!!! TTAAGTTGTAAGGTTTTAGA+GGG - chr2_1:48148889-48148908 Msa0209510:intron 25.0%
! CAAAACCTTACAACTTAAAA+GGG + chr2_1:48149073-48149092 None:intergenic 25.0%
! TCAAAACCTTACAACTTAAA+AGG + chr2_1:48149074-48149093 None:intergenic 25.0%
!!! TAAGGTTTTGAATTAAATCG+TGG - chr2_1:48149083-48149102 Msa0209510:exon 25.0%
!!! TTTGATAATGCGGTTTTATT+TGG - chr2_1:48149125-48149144 Msa0209510:CDS 25.0%
! ATTACCTATTTGAGAGTTTA+GGG - chr2_1:48149489-48149508 Msa0209510:intron 25.0%
! ATGAATTGTTAAATGTTGGT+TGG - chr2_1:48149583-48149602 Msa0209510:intron 25.0%
!!! GATTCAGATTTGTTAACATT+AGG + chr2_1:48150459-48150478 None:intergenic 25.0%
! AAGTCAATGTAAAAATAGCA+TGG + chr2_1:48150529-48150548 None:intergenic 25.0%
! TGACATGTATATCAATGATT+TGG - chr2_1:48150605-48150624 Msa0209510:intron 25.0%
! TTTGTTAATGAGCAAAACTT+TGG - chr2_1:48150685-48150704 Msa0209510:intron 25.0%
! AGTCATAAAACTACAAATAG+CGG + chr2_1:48151518-48151537 None:intergenic 25.0%
!! GTTTTATGACTTTTATCTAC+AGG - chr2_1:48151527-48151546 Msa0209510:intron 25.0%
!! CATTGAAGTATCATTAATGA+AGG + chr2_1:48151557-48151576 None:intergenic 25.0%
! CTTCATTAATGATACTTCAA+TGG - chr2_1:48151555-48151574 Msa0209510:intron 25.0%
! TAATTTATGGAACTCATTGA+AGG + chr2_1:48152184-48152203 None:intergenic 25.0%
! AGAATAGAACAGCTAATTTA+TGG + chr2_1:48152197-48152216 None:intergenic 25.0%
! TCATACTTTCTGTGATAATT+TGG - chr2_1:48152271-48152290 Msa0209510:intron 25.0%
! ACATTGTCAGAATTGAAAAA+GGG + chr2_1:48152297-48152316 None:intergenic 25.0%
! TACATTGTCAGAATTGAAAA+AGG + chr2_1:48152298-48152317 None:intergenic 25.0%
! ATACAATTGAACTAGAATGA+AGG + chr2_1:48152347-48152366 None:intergenic 25.0%
!!! TAATGTTTTAATCATTGGAC+AGG - chr2_1:48152380-48152399 Msa0209510:intron 25.0%
! TTAAAGAACATTCAAATGGA+AGG + chr2_1:48152698-48152717 None:intergenic 25.0%
!!! ATTGTTAGGTTTTATAGTTG+AGG + chr2_1:48152808-48152827 None:intergenic 25.0%
!!! ATTTTCTTTTTTGAACAGGA+AGG - chr2_1:48152899-48152918 Msa0209510:CDS 25.0%
! AAGAAATAACTGTTGTACAA+TGG + chr2_1:48153250-48153269 None:intergenic 25.0%
!!! TGTACAACAGTTATTTCTTT+TGG - chr2_1:48153251-48153270 Msa0209510:CDS 25.0%
!!! TTATGTTTTTAGGTCAGGAT+TGG + chr2_1:48148341-48148360 None:intergenic 30.0%
!!! CAAGTTTATGTTTTTAGGTC+AGG + chr2_1:48148346-48148365 None:intergenic 30.0%
CTGACCTAAAAACATAAACT+TGG - chr2_1:48148344-48148363 Msa0209510:three_prime_UTR 30.0%
! GCAACCAAGTTTATGTTTTT+AGG + chr2_1:48148351-48148370 None:intergenic 30.0%
!! TTCTTTTTGGTGATAGAGAA+AGG + chr2_1:48148489-48148508 None:intergenic 30.0%
! TACTAACCTTGTCTTTAAAG+TGG + chr2_1:48148571-48148590 None:intergenic 30.0%
TTAGTATCCTTAACTCAACT+GGG - chr2_1:48148585-48148604 Msa0209510:three_prime_UTR 30.0%
! GAAATTTGTGTAGGTTGTTT+TGG - chr2_1:48148652-48148671 Msa0209510:three_prime_UTR 30.0%
!!! TAAGTTGTAAGGTTTTAGAG+GGG - chr2_1:48148890-48148909 Msa0209510:intron 30.0%
TTGTTGTCAAATTGACTGAA+AGG - chr2_1:48148936-48148955 Msa0209510:intron 30.0%
! TAGCCTTTTGTGTAAAAAAC+AGG - chr2_1:48148967-48148986 Msa0209510:intron 30.0%
! AGCCTTTTGTGTAAAAAACA+GGG - chr2_1:48148968-48148987 Msa0209510:intron 30.0%
!!! TACCCTGTTTTTTACACAAA+AGG + chr2_1:48148973-48148992 None:intergenic 30.0%
TTTGTGTAAAAAACAGGGTA+AGG - chr2_1:48148973-48148992 Msa0209510:intron 30.0%
! AATTTGGTGATTTACTCTCA+AGG + chr2_1:48149179-48149198 None:intergenic 30.0%
TACAAATTCGGAGACAAATT+TGG + chr2_1:48149195-48149214 None:intergenic 30.0%
AAATTTGTCTCCGAATTTGT+AGG - chr2_1:48149194-48149213 Msa0209510:CDS 30.0%
! GGGTCCAAATTGATAATTTA+TGG - chr2_1:48149344-48149363 Msa0209510:intron 30.0%
AACTTAATTGATACTTCCTC+CGG - chr2_1:48149379-48149398 Msa0209510:intron 30.0%
ATGTATCTGGACATCAATTA+AGG - chr2_1:48149440-48149459 Msa0209510:intron 30.0%
GATTACCTATTTGAGAGTTT+AGG - chr2_1:48149488-48149507 Msa0209510:intron 30.0%
TAAACCCTAAACTCTCAAAT+AGG + chr2_1:48149496-48149515 None:intergenic 30.0%
! TATTTGAGAGTTTAGGGTTT+AGG - chr2_1:48149495-48149514 Msa0209510:intron 30.0%
AAACACTTTAAGCCAATCAA+AGG + chr2_1:48149624-48149643 None:intergenic 30.0%
TTGATGTTATCATCTCTGAA+TGG - chr2_1:48149663-48149682 Msa0209510:CDS 30.0%
!!! TCTAGTTTTTCAAATGAGTG+AGG + chr2_1:48149864-48149883 None:intergenic 30.0%
GGTTAATCAGTATTGTTAAG+TGG - chr2_1:48150083-48150102 Msa0209510:intron 30.0%
TAATCAGTATTGTTAAGTGG+TGG - chr2_1:48150086-48150105 Msa0209510:intron 30.0%
ACTGTAACACTGTTGTAAAA+CGG - chr2_1:48150170-48150189 Msa0209510:intron 30.0%
TGTTGTTAATTGCAGAAACA+TGG + chr2_1:48150225-48150244 None:intergenic 30.0%
! AGCATGGTAATGTGAAAATT+GGG + chr2_1:48150513-48150532 None:intergenic 30.0%
! TAGCATGGTAATGTGAAAAT+TGG + chr2_1:48150514-48150533 None:intergenic 30.0%
!! AATGATTTGGTAAACTGTGA+AGG - chr2_1:48150618-48150637 Msa0209510:intron 30.0%
CACAAAATTGACATGTTCTA+TGG - chr2_1:48151059-48151078 Msa0209510:intron 30.0%
AACCAAAATGAATTCCATGT+GGG + chr2_1:48151103-48151122 None:intergenic 30.0%
AAACCAAAATGAATTCCATG+TGG + chr2_1:48151104-48151123 None:intergenic 30.0%
!!! ATTTTGGTTTGTTTGTCGTA+CGG - chr2_1:48151114-48151133 Msa0209510:intron 30.0%
ATGTTGATGTTCTTGTTCTT+GGG + chr2_1:48151176-48151195 None:intergenic 30.0%
! AATTAGGTTTTTCATGCAAG+TGG + chr2_1:48151215-48151234 None:intergenic 30.0%
! GAATGAAGTACTTCTGAATT+AGG + chr2_1:48151231-48151250 None:intergenic 30.0%
ACAATGAAAAGGCTATAAGA+CGG + chr2_1:48151280-48151299 None:intergenic 30.0%
GTTATAGCACTAATGCTTAA+GGG - chr2_1:48151428-48151447 Msa0209510:intron 30.0%
TGAAATCATCAAGAGAAAGT+TGG + chr2_1:48151645-48151664 None:intergenic 30.0%
AATATTAATGAAGGAGCTGA+TGG - chr2_1:48152156-48152175 Msa0209510:intron 30.0%
CCTGTTAAAGAACATTCAAA+TGG + chr2_1:48152702-48152721 None:intergenic 30.0%
CCATTTGAATGTTCTTTAAC+AGG - chr2_1:48152699-48152718 Msa0209510:intron 30.0%
!! TGTAGAAGTGCTTAATTGTT+AGG + chr2_1:48152822-48152841 None:intergenic 30.0%
TTCAATCTTATCGAACTGTA+CGG - chr2_1:48152936-48152955 Msa0209510:CDS 30.0%
!!! TGGGTTGTCTGATTTTTTTT+TGG - chr2_1:48153219-48153238 Msa0209510:CDS 30.0%
AATAACTGTTGTACAATGGA+AGG + chr2_1:48153246-48153265 None:intergenic 30.0%
AATCCTACAATAAGGTTTCA+GGG + chr2_1:48153280-48153299 None:intergenic 30.0%
TAATCCTACAATAAGGTTTC+AGG + chr2_1:48153281-48153300 None:intergenic 30.0%
TCTACTCTAATCCTACAATA+AGG + chr2_1:48153288-48153307 None:intergenic 30.0%
!!! TTTTTAGGTCAGGATTGGTT+TGG + chr2_1:48148336-48148355 None:intergenic 35.0%
!!! GATCTGAGAGCATTTCTTTT+TGG + chr2_1:48148502-48148521 None:intergenic 35.0%
! CAAACACCACTTTAAAGACA+AGG - chr2_1:48148562-48148581 Msa0209510:three_prime_UTR 35.0%
GTTAGTATCCTTAACTCAAC+TGG - chr2_1:48148584-48148603 Msa0209510:three_prime_UTR 35.0%
TGTTGAAGCTACTAAGATGT+CGG - chr2_1:48148742-48148761 Msa0209510:three_prime_UTR 35.0%
GAAATCGAATAATCTTGAGC+AGG - chr2_1:48148784-48148803 Msa0209510:intron 35.0%
CATACAAACAAACCTTTCTC+AGG + chr2_1:48148851-48148870 None:intergenic 35.0%
GGTTTCAGATGTCTTAGTTA+TGG + chr2_1:48149158-48149177 None:intergenic 35.0%
!! TTGATAGCGTCCTACAAATT+CGG + chr2_1:48149207-48149226 None:intergenic 35.0%
! GGGACTAGATTGTTATTAAG+TGG - chr2_1:48149312-48149331 Msa0209510:intron 35.0%
TTTCTTATAATAGTGACCGG+AGG + chr2_1:48149398-48149417 None:intergenic 35.0%
!! TTTCGGGTTACTTATGTATC+TGG - chr2_1:48149427-48149446 Msa0209510:intron 35.0%
!! TTTAGGGTTTAGGACTAGTT+TGG - chr2_1:48149505-48149524 Msa0209510:intron 35.0%
TGTTATCATCTCTGAATGGA+TGG - chr2_1:48149667-48149686 Msa0209510:intron 35.0%
GTTATCATCTCTGAATGGAT+GGG - chr2_1:48149668-48149687 Msa0209510:intron 35.0%
AATACTTACATCACTCCTGT+TGG + chr2_1:48149758-48149777 None:intergenic 35.0%
AAAAACCCTCTTTCGTTTCT+GGG + chr2_1:48149789-48149808 None:intergenic 35.0%
AAAAAACCCTCTTTCGTTTC+TGG + chr2_1:48149790-48149809 None:intergenic 35.0%
! TTTTCAAATGAGTGAGGAGT+AGG + chr2_1:48149858-48149877 None:intergenic 35.0%
! GTTTTACAACAGTGTTACAG+TGG + chr2_1:48150171-48150190 None:intergenic 35.0%
ACATGGATAGCAGAAAAAAG+TGG + chr2_1:48150208-48150227 None:intergenic 35.0%
TTCTGCAATTAACAACACTG+AGG - chr2_1:48150228-48150247 Msa0209510:intron 35.0%
! AGTGGCTCTATTATAGTGAA+GGG + chr2_1:48150426-48150445 None:intergenic 35.0%
!! TAGGGGTTTTGTGTTATGAA+GGG + chr2_1:48150485-48150504 None:intergenic 35.0%
!! TTAGGGGTTTTGTGTTATGA+AGG + chr2_1:48150486-48150505 None:intergenic 35.0%
TGTGAAAATTGGGGTAGTTA+GGG + chr2_1:48150503-48150522 None:intergenic 35.0%
ATGTGAAAATTGGGGTAGTT+AGG + chr2_1:48150504-48150523 None:intergenic 35.0%
! GCATGGTAATGTGAAAATTG+GGG + chr2_1:48150512-48150531 None:intergenic 35.0%
ATACATGTCAGTATCTCTGT+TGG + chr2_1:48150595-48150614 None:intergenic 35.0%
! TCTGGTTCATGAAAATGAGA+TGG - chr2_1:48150643-48150662 Msa0209510:intron 35.0%
GTTAATGAGCAAAACTTTGG+TGG - chr2_1:48150688-48150707 Msa0209510:intron 35.0%
TGGGATAGTAGAACAAAAGT+TGG - chr2_1:48150800-48150819 Msa0209510:CDS 35.0%
GGGATAGTAGAACAAAAGTT+GGG - chr2_1:48150801-48150820 Msa0209510:CDS 35.0%
GATGAAACAAAAGCCTTCTA+TGG - chr2_1:48150864-48150883 Msa0209510:CDS 35.0%
ACCAAAATGAATTCCATGTG+GGG + chr2_1:48151102-48151121 None:intergenic 35.0%
! CACTTTTATACACTACAGCA+TGG + chr2_1:48151141-48151160 None:intergenic 35.0%
CATGTTGATGTTCTTGTTCT+TGG + chr2_1:48151177-48151196 None:intergenic 35.0%
ACAAGAACATCAACATGTGT+TGG - chr2_1:48151180-48151199 Msa0209510:intron 35.0%
TCTGAACTTGGTTTATGAGT+GGG + chr2_1:48151255-48151274 None:intergenic 35.0%
TTCTGAACTTGGTTTATGAG+TGG + chr2_1:48151256-48151275 None:intergenic 35.0%
TATAAGACGGTTTCTGAACT+TGG + chr2_1:48151267-48151286 None:intergenic 35.0%
TTCACTCTTGCACAATGAAA+AGG + chr2_1:48151291-48151310 None:intergenic 35.0%
TCATGATTGCATGGAAGAAA+GGG + chr2_1:48151331-48151350 None:intergenic 35.0%
TTCATGATTGCATGGAAGAA+AGG + chr2_1:48151332-48151351 None:intergenic 35.0%
CAATAATGCAACTGTGTAAG+TGG - chr2_1:48151368-48151387 Msa0209510:intron 35.0%
CGTTATAGCACTAATGCTTA+AGG - chr2_1:48151427-48151446 Msa0209510:intron 35.0%
GTGGAACAAGGATAGAAATT+AGG + chr2_1:48151478-48151497 None:intergenic 35.0%
AATTTCTGTAGACATCGTTG+TGG - chr2_1:48151719-48151738 Msa0209510:intron 35.0%
AACACAAAACTGTGTGGATA+TGG - chr2_1:48151868-48151887 Msa0209510:intron 35.0%
GATGGTTTGATGTACATTTC+CGG - chr2_1:48151893-48151912 Msa0209510:intron 35.0%
ATGGTTTGATGTACATTTCC+GGG - chr2_1:48151894-48151913 Msa0209510:intron 35.0%
TTTCCTGTTTATGCTTACCA+GGG - chr2_1:48151974-48151993 Msa0209510:CDS 35.0%
TGTGTACAGTAATCTACACT+AGG + chr2_1:48152046-48152065 None:intergenic 35.0%
TGTAGATTACTGTACACACT+GGG - chr2_1:48152048-48152067 Msa0209510:intron 35.0%
! CTCTCATCTATAAAGGTACA+AGG + chr2_1:48152235-48152254 None:intergenic 35.0%
TACCTTTATAGATGAGAGAC+AGG - chr2_1:48152237-48152256 Msa0209510:intron 35.0%
ACCTTTATAGATGAGAGACA+GGG - chr2_1:48152238-48152257 Msa0209510:intron 35.0%
!! CTGTGAGATTCAAAAGCATT+CGG - chr2_1:48152512-48152531 Msa0209510:intron 35.0%
!! TGTGAGATTCAAAAGCATTC+GGG - chr2_1:48152513-48152532 Msa0209510:intron 35.0%
GAACATTCAAATGGAAGGAT+AGG + chr2_1:48152693-48152712 None:intergenic 35.0%
ATCGAACTGTACGGTTATTA+AGG - chr2_1:48152945-48152964 Msa0209510:CDS 35.0%
TCGAACTGTACGGTTATTAA+GGG - chr2_1:48152946-48152965 Msa0209510:CDS 35.0%
TGTTTACAGAAGAAAGCAGT+TGG - chr2_1:48152986-48153005 Msa0209510:CDS 35.0%
!!! TTGGCGTTGCTTTTAATACT+TGG - chr2_1:48153005-48153024 Msa0209510:intron 35.0%
TGTTCAGCATTATTCAGTGA+TGG - chr2_1:48153076-48153095 Msa0209510:intron 35.0%
TACAAGCTTTGCTTGAAAGT+CGG + chr2_1:48153131-48153150 None:intergenic 35.0%
ATAAAGAGGATAGTAGGGTA+GGG + chr2_1:48153319-48153338 None:intergenic 35.0%
TACCCTACTATCCTCTTTAT+CGG - chr2_1:48153319-48153338 Msa0209510:five_prime_UTR 35.0%
!!! GTGCAGGTTTTATTTTGAGA+AGG - chr2_1:48153341-48153360 Msa0209510:five_prime_UTR 35.0%
! TTAGCGTAGTCGACTTCTTT+GGG + chr2_1:48148449-48148468 None:intergenic 40.0%
! ATTAGCGTAGTCGACTTCTT+TGG + chr2_1:48148450-48148469 None:intergenic 40.0%
! TTGGTGATAGAGAAAGGAGT+AGG + chr2_1:48148483-48148502 None:intergenic 40.0%
ATCCTTAACTCAACTGGGTT+TGG - chr2_1:48148590-48148609 Msa0209510:three_prime_UTR 40.0%
TCCTTAACTCAACTGGGTTT+GGG - chr2_1:48148591-48148610 Msa0209510:three_prime_UTR 40.0%
!!! GTGTAGGTTGTTTTGGATGT+TGG - chr2_1:48148659-48148678 Msa0209510:three_prime_UTR 40.0%
! GAAGTGGGATTCTTGCTATA+TGG - chr2_1:48148687-48148706 Msa0209510:three_prime_UTR 40.0%
TAATCTTGAGCAGGTTGTTG+AGG - chr2_1:48148793-48148812 Msa0209510:intron 40.0%
CAGGTTGTTGAGGTTATTGA+GGG - chr2_1:48148803-48148822 Msa0209510:intron 40.0%
GATGTTACATTGCCTGAGAA+AGG - chr2_1:48148836-48148855 Msa0209510:intron 40.0%
CAAATTGACTGAAAGGTCAC+AGG - chr2_1:48148943-48148962 Msa0209510:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr2_1:48148999-48149018 Msa0209510:intron 40.0%
TACAACTTAAAAGGGCAACC+CGG + chr2_1:48149065-48149084 None:intergenic 40.0%
!!! GGTTGCCCTTTTAAGTTGTA+AGG - chr2_1:48149065-48149084 Msa0209510:three_prime_UTR 40.0%
AGTTTATCCGATAGTCTGTG+AGG - chr2_1:48149291-48149310 Msa0209510:intron 40.0%
GTTTATCCGATAGTCTGTGA+GGG - chr2_1:48149292-48149311 Msa0209510:intron 40.0%
CAATTGTTGCCACAACATCA+AGG + chr2_1:48149545-48149564 None:intergenic 40.0%
GCCTTTGTGTATCCTTTGAT+TGG - chr2_1:48149609-48149628 Msa0209510:CDS 40.0%
GCCAATCAAAGGATACACAA+AGG + chr2_1:48149613-48149632 None:intergenic 40.0%
TTTCTTCCCAGAAACGAAAG+AGG - chr2_1:48149780-48149799 Msa0209510:CDS 40.0%
TTCTTCCCAGAAACGAAAGA+GGG - chr2_1:48149781-48149800 Msa0209510:CDS 40.0%
TTATCGTTCACGTTCTCGTA+CGG + chr2_1:48150292-48150311 None:intergenic 40.0%
GATAGAAAACTCTCCTCCAA+GGG - chr2_1:48150396-48150415 Msa0209510:intron 40.0%
! CAGTGGCTCTATTATAGTGA+AGG + chr2_1:48150427-48150446 None:intergenic 40.0%
ACATTAGGTGAATAGAGCAG+TGG + chr2_1:48150444-48150463 None:intergenic 40.0%
!! GGTTTTGTGTTATGAAGGGA+AGG + chr2_1:48150481-48150500 None:intergenic 40.0%
GTGAAAATTGGGGTAGTTAG+GGG + chr2_1:48150502-48150521 None:intergenic 40.0%
GTAATGTGCTGGAAATAGCA+TGG + chr2_1:48150573-48150592 None:intergenic 40.0%
!! TATCTCTGTTGGTAATGTGC+TGG + chr2_1:48150584-48150603 None:intergenic 40.0%
!! TGGTAAACTGTGAAGGTATC+TGG - chr2_1:48150625-48150644 Msa0209510:intron 40.0%
! AGCAAAACTTTGGTGGCTTT+CGG - chr2_1:48150695-48150714 Msa0209510:intron 40.0%
TCTACTATCCCAGTCCTAAT+GGG + chr2_1:48150792-48150811 None:intergenic 40.0%
TTCTACTATCCCAGTCCTAA+TGG + chr2_1:48150793-48150812 None:intergenic 40.0%
GCTCATATCAACACCATAGA+AGG + chr2_1:48150880-48150899 None:intergenic 40.0%
!! TGGTGTTGATATGAGCACTT+TGG - chr2_1:48150884-48150903 Msa0209510:CDS 40.0%
GCAGAGGAAATACTATCTAC+AGG - chr2_1:48150926-48150945 Msa0209510:intron 40.0%
ACAAGCCAGCACATAATGTA+GGG + chr2_1:48151034-48151053 None:intergenic 40.0%
ATGAATTCCATGTGGGGATT+AGG + chr2_1:48151096-48151115 None:intergenic 40.0%
! TCCCCACATGGAATTCATTT+TGG - chr2_1:48151098-48151117 Msa0209510:intron 40.0%
AGAACATCAACATGTGTTGG+TGG - chr2_1:48151183-48151202 Msa0209510:intron 40.0%
! GAACATCAACATGTGTTGGT+GGG - chr2_1:48151184-48151203 Msa0209510:intron 40.0%
! AGAAAGGGCTTTTGGATCAA+GGG + chr2_1:48151316-48151335 None:intergenic 40.0%
! AAGAAAGGGCTTTTGGATCA+AGG + chr2_1:48151317-48151336 None:intergenic 40.0%
CAGCAAAGTTCATGATTGCA+TGG + chr2_1:48151340-48151359 None:intergenic 40.0%
TGCAATCATGAACTTTGCTG+TGG - chr2_1:48151340-48151359 Msa0209510:intron 40.0%
TCTATCCTTGTTCCACTGTA+AGG - chr2_1:48151482-48151501 Msa0209510:intron 40.0%
CTATCCTTGTTCCACTGTAA+GGG - chr2_1:48151483-48151502 Msa0209510:intron 40.0%
AGTCTCCTCTGATGAGATTT+GGG + chr2_1:48151599-48151618 None:intergenic 40.0%
CTTCATCCACATCAAGTCAT+AGG - chr2_1:48151748-48151767 Msa0209510:intron 40.0%
!! ACACAGTTTTGTGTTCTCTG+TGG + chr2_1:48151863-48151882 None:intergenic 40.0%
ACAGAGAACACAAAACTGTG+TGG - chr2_1:48151862-48151881 Msa0209510:intron 40.0%
ACAAAACTGTGTGGATATGG+AGG - chr2_1:48151871-48151890 Msa0209510:intron 40.0%
ATAGCTATAATGCCCATGCA+AGG + chr2_1:48151933-48151952 None:intergenic 40.0%
TTGCATGGGCATTATAGCTA+TGG - chr2_1:48151932-48151951 Msa0209510:CDS 40.0%
GTTTCCTGTTTATGCTTACC+AGG - chr2_1:48151973-48151992 Msa0209510:CDS 40.0%
AACTCAATCTCATGTTCAGC+TGG + chr2_1:48152013-48152032 None:intergenic 40.0%
ACAGTAATCTACACTAGGAG+CGG + chr2_1:48152041-48152060 None:intergenic 40.0%
GTGTAGATTACTGTACACAC+TGG - chr2_1:48152047-48152066 Msa0209510:intron 40.0%
GTAGATTACTGTACACACTG+GGG - chr2_1:48152049-48152068 Msa0209510:intron 40.0%
ACCCTGTCTCTCATCTATAA+AGG + chr2_1:48152242-48152261 None:intergenic 40.0%
GAATGAAGGTCACAGGTTAT+AGG + chr2_1:48152333-48152352 None:intergenic 40.0%
TGAACTAGAATGAAGGTCAC+AGG + chr2_1:48152340-48152359 None:intergenic 40.0%
CATGTGTAGGAGGATTTAAG+AGG + chr2_1:48152410-48152429 None:intergenic 40.0%
! TTTTCTAATGAGTCGCTCGA+AGG - chr2_1:48152458-48152477 Msa0209510:intron 40.0%
TTTCTAATGAGTCGCTCGAA+GGG - chr2_1:48152459-48152478 Msa0209510:intron 40.0%
GAAGGGAAACCATCGTTTAA+TGG - chr2_1:48152476-48152495 Msa0209510:intron 40.0%
AGTTTAGATCCCTTTGTTCG+CGG - chr2_1:48152580-48152599 Msa0209510:intron 40.0%
! TAGAGTTTAGAGCATACCGT+GGG + chr2_1:48152621-48152640 None:intergenic 40.0%
! ATAGAGTTTAGAGCATACCG+TGG + chr2_1:48152622-48152641 None:intergenic 40.0%
! ACTTGGTTCTTCCGATCATT+TGG - chr2_1:48153022-48153041 Msa0209510:intron 40.0%
GTCACACACAACCAAATGAT+CGG + chr2_1:48153036-48153055 None:intergenic 40.0%
TGTGTGACATGTGACTCATA+AGG - chr2_1:48153048-48153067 Msa0209510:intron 40.0%
GTGTGACATGTGACTCATAA+GGG - chr2_1:48153049-48153068 Msa0209510:intron 40.0%
CAGCATTATTCAGTGATGGT+TGG - chr2_1:48153080-48153099 Msa0209510:intron 40.0%
TGGTTGGATAAACCTCGTAT+TGG - chr2_1:48153096-48153115 Msa0209510:CDS 40.0%
ACAAGCTTTGCTTGAAAGTC+GGG + chr2_1:48153130-48153149 None:intergenic 40.0%
CAACCCTGAAACCTTATTGT+AGG - chr2_1:48153274-48153293 Msa0209510:exon 40.0%
GATAAAGAGGATAGTAGGGT+AGG + chr2_1:48153320-48153339 None:intergenic 40.0%
CACCGATAAAGAGGATAGTA+GGG + chr2_1:48153324-48153343 None:intergenic 40.0%
! TAAAACCTGCACCGATAAAG+AGG + chr2_1:48153333-48153352 None:intergenic 40.0%
!! TTAGGTCAGGATTGGTTTGG+CGG + chr2_1:48148333-48148352 None:intergenic 45.0%
CATGGTTCTTACTCACTCAG+CGG + chr2_1:48148378-48148397 None:intergenic 45.0%
GCTGAGTGAGTAAGAACCAT+GGG - chr2_1:48148377-48148396 Msa0209510:three_prime_UTR 45.0%
! TAGCGTAGTCGACTTCTTTG+GGG + chr2_1:48148448-48148467 None:intergenic 45.0%
ACCCAAACCCAGTTGAGTTA+AGG + chr2_1:48148595-48148614 None:intergenic 45.0%
! AACTCAACTGGGTTTGGGTT+TGG - chr2_1:48148596-48148615 Msa0209510:three_prime_UTR 45.0%
! ACTCAACTGGGTTTGGGTTT+GGG - chr2_1:48148597-48148616 Msa0209510:three_prime_UTR 45.0%
!!! GTTGTTTTGGATGTTGGTGC+TGG - chr2_1:48148665-48148684 Msa0209510:three_prime_UTR 45.0%
GCAGGTTGTTGAGGTTATTG+AGG - chr2_1:48148802-48148821 Msa0209510:intron 45.0%
GGTTATTGAGGGTTCTGTTG+AGG - chr2_1:48148814-48148833 Msa0209510:intron 45.0%
!!! AGGTTTTAGAGGGGTAACCT+TGG - chr2_1:48148899-48148918 Msa0209510:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr2_1:48148995-48149014 Msa0209510:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr2_1:48148998-48149017 Msa0209510:intron 45.0%
TCTAGTCCCTCACAGACTAT+CGG + chr2_1:48149301-48149320 None:intergenic 45.0%
TCCGCAAAACCTTGATGTTG+TGG - chr2_1:48149533-48149552 Msa0209510:intron 45.0%
! GCCACAACATCAAGGTTTTG+CGG + chr2_1:48149537-48149556 None:intergenic 45.0%
CGATAGAAAACTCTCCTCCA+AGG - chr2_1:48150395-48150414 Msa0209510:intron 45.0%
TATAGTGAAGGGCAAACCCT+TGG + chr2_1:48150415-48150434 None:intergenic 45.0%
! TTTGGCAAAGCCTTTTGCTG+AGG - chr2_1:48150902-48150921 Msa0209510:intron 45.0%
ATCAGCCCTACATTATGTGC+TGG - chr2_1:48151026-48151045 Msa0209510:intron 45.0%
CACAAGCCAGCACATAATGT+AGG + chr2_1:48151035-48151054 None:intergenic 45.0%
GAACAATCCTAATCCCCACA+TGG - chr2_1:48151086-48151105 Msa0209510:intron 45.0%
! GAAAGGGCTTTTGGATCAAG+GGG + chr2_1:48151315-48151334 None:intergenic 45.0%
! TGCATGGAAGAAAGGGCTTT+TGG + chr2_1:48151324-48151343 None:intergenic 45.0%
TGCAACTGTGTAAGTGGCTT+TGG - chr2_1:48151374-48151393 Msa0209510:intron 45.0%
!! TCAAGAGCGCTGTCAAATTG+AGG - chr2_1:48151404-48151423 Msa0209510:intron 45.0%
ATGTCCCTTACAGTGGAACA+AGG + chr2_1:48151490-48151509 None:intergenic 45.0%
CTCTGATGAGATTTGGGCAT+GGG + chr2_1:48151593-48151612 None:intergenic 45.0%
CAGTCTCCTCTGATGAGATT+TGG + chr2_1:48151600-48151619 None:intergenic 45.0%
GCAGTTCCTATGACTTGATG+TGG + chr2_1:48151757-48151776 None:intergenic 45.0%
CATCAAGTCATAGGAACTGC+TGG - chr2_1:48151757-48151776 Msa0209510:intron 45.0%
! AGGAACTGCTGGTCTAGTAA+AGG - chr2_1:48151768-48151787 Msa0209510:intron 45.0%
AACTGTGTGGATATGGAGGA+TGG - chr2_1:48151875-48151894 Msa0209510:intron 45.0%
TAAGATGCTCTGACCTTGCA+TGG - chr2_1:48151917-48151936 Msa0209510:CDS 45.0%
AAGATGCTCTGACCTTGCAT+GGG - chr2_1:48151918-48151937 Msa0209510:CDS 45.0%
TCACCATCACTCACATGTGT+AGG + chr2_1:48152423-48152442 None:intergenic 45.0%
GGGAAACCATCGTTTAATGG+AGG - chr2_1:48152479-48152498 Msa0209510:intron 45.0%
GCTCAACCTCCATTAAACGA+TGG + chr2_1:48152488-48152507 None:intergenic 45.0%
CGTTTAATGGAGGTTGAGCT+TGG - chr2_1:48152489-48152508 Msa0209510:intron 45.0%
!! CGGGAAAAAGTACCAATACG+AGG + chr2_1:48153111-48153130 None:intergenic 45.0%
! GCACCGATAAAGAGGATAGT+AGG + chr2_1:48153325-48153344 None:intergenic 45.0%
ACTATCCTCTTTATCGGTGC+AGG - chr2_1:48153325-48153344 Msa0209510:five_prime_UTR 45.0%
!!! TTTAAAAATATTTATTTTGT+AGG - chr2_1:48150736-48150755 Msa0209510:intron 5.0%
!! AAATTAAAATATGTATAAAT+TGG + chr2_1:48151704-48151723 None:intergenic 5.0%
!! TCAGGATTGGTTTGGCGGTA+GGG + chr2_1:48148328-48148347 None:intergenic 50.0%
CGCTGAGTGAGTAAGAACCA+TGG - chr2_1:48148376-48148395 Msa0209510:three_prime_UTR 50.0%
!!! GTTTTCGGAAGAAGTGCCCA+TGG + chr2_1:48148396-48148415 None:intergenic 50.0%
! GTAGTCGACTTCTTTGGGGA+CGG + chr2_1:48148444-48148463 None:intergenic 50.0%
GCTCTCAGATCGTGTTCGTA+TGG - chr2_1:48148511-48148530 Msa0209510:three_prime_UTR 50.0%
!! TTGGATGTTGGTGCTGGAAG+TGG - chr2_1:48148671-48148690 Msa0209510:three_prime_UTR 50.0%
!! TGGATGTTGGTGCTGGAAGT+GGG - chr2_1:48148672-48148691 Msa0209510:three_prime_UTR 50.0%
GCTATATGGTCAGCTCAAGC+AGG - chr2_1:48148701-48148720 Msa0209510:three_prime_UTR 50.0%
AGCTCAAGCAGGTGCAAAGA+AGG - chr2_1:48148712-48148731 Msa0209510:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr2_1:48148919-48148938 None:intergenic 50.0%
ATCCTAGTCATGCTCGCATG+TGG - chr2_1:48150760-48150779 Msa0209510:intron 50.0%
ATCCACATGCGAGCATGACT+AGG + chr2_1:48150765-48150784 None:intergenic 50.0%
TAGTCATGCTCGCATGTGGA+TGG - chr2_1:48150764-48150783 Msa0209510:intron 50.0%
GGCGATTACCAGTCAGCTAT+GGG - chr2_1:48150822-48150841 Msa0209510:CDS 50.0%
TTCCTCTGCTCCTCAGCAAA+AGG + chr2_1:48150915-48150934 None:intergenic 50.0%
! TCAACATGTGTTGGTGGGTC+AGG - chr2_1:48151189-48151208 Msa0209510:intron 50.0%
CCTCTGATGAGATTTGGGCA+TGG + chr2_1:48151594-48151613 None:intergenic 50.0%
CCATGCCCAAATCTCATCAG+AGG - chr2_1:48151591-48151610 Msa0209510:intron 50.0%
TGACTGTTTGACTGCCACAG+TGG - chr2_1:48151795-48151814 Msa0209510:intron 50.0%
TTCCTCTATGTCTGCCACTG+TGG + chr2_1:48151812-48151831 None:intergenic 50.0%
! CAAGGTCAGAGCATCTTACC+CGG + chr2_1:48151915-48151934 None:intergenic 50.0%
CGTCCCTGGTAAGCATAAAC+AGG + chr2_1:48151980-48151999 None:intergenic 50.0%
GTAATCTACACTAGGAGCGG+TGG + chr2_1:48152038-48152057 None:intergenic 50.0%
CCATCACTCACATGTGTAGG+AGG + chr2_1:48152420-48152439 None:intergenic 50.0%
CCTCCTACACATGTGAGTGA+TGG - chr2_1:48152417-48152436 Msa0209510:intron 50.0%
CTTGAAGCTCCGCGAACAAA+GGG + chr2_1:48152592-48152611 None:intergenic 50.0%
GAGCTTCAAGCAGTATCCCA+CGG - chr2_1:48152602-48152621 Msa0209510:intron 50.0%
!! GTCAGGATTGGTTTGGCGGT+AGG + chr2_1:48148329-48148348 None:intergenic 55.0%
GGTTCTTACTCACTCAGCGG+TGG + chr2_1:48148375-48148394 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr2_1:48149038-48149057 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr2_1:48149039-48149058 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr2_1:48149043-48149062 Msa0209510:intron 55.0%
TCATATGTGCTCGTGACCGC+TGG - chr2_1:48149726-48149745 Msa0209510:intron 55.0%
!! CTCCTGTTGGTTTGAGCCAG+CGG + chr2_1:48149745-48149764 None:intergenic 55.0%
AGTGAAGGGCAAACCCTTGG+AGG + chr2_1:48150412-48150431 None:intergenic 55.0%
GCATGTGGATGGCACCCATT+AGG - chr2_1:48150775-48150794 Msa0209510:intron 55.0%
TGGATGGCACCCATTAGGAC+TGG - chr2_1:48150780-48150799 Msa0209510:intron 55.0%
GGATGGCACCCATTAGGACT+GGG - chr2_1:48150781-48150800 Msa0209510:intron 55.0%
GGGCGATTACCAGTCAGCTA+TGG - chr2_1:48150821-48150840 Msa0209510:CDS 55.0%
ACCAGTCAGCTATGGGCGAT+TGG - chr2_1:48150829-48150848 Msa0209510:CDS 55.0%
! AGCCTTTTGCTGAGGAGCAG+AGG - chr2_1:48150910-48150929 Msa0209510:intron 55.0%
GGCTGCTATGTCCCTTACAG+TGG + chr2_1:48151497-48151516 None:intergenic 55.0%
TGCCACAGTGGCAGACATAG+AGG - chr2_1:48151807-48151826 Msa0209510:intron 55.0%
TGCTTACCAGGGACGAAGTG+AGG - chr2_1:48151985-48152004 Msa0209510:CDS 55.0%
GCTTGAAGCTCCGCGAACAA+AGG + chr2_1:48152593-48152612 None:intergenic 55.0%
! GTCGACTTCTTTGGGGACGG+CGG + chr2_1:48148441-48148460 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr2_1:48148908-48148927 Msa0209510:intron 60.0%
CAGGAAGGGGTCCCACCATT+TGG + chr2_1:48149013-48149032 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+TGG - chr2_1:48149011-48149030 Msa0209510:intron 60.0%
CATACGCAGGGTCCAGGAAG+GGG + chr2_1:48149026-48149045 None:intergenic 60.0%
GCATACGCAGGGTCCAGGAA+GGG + chr2_1:48149027-48149046 None:intergenic 60.0%
CTTCCTGGACCCTGCGTATG+CGG - chr2_1:48149026-48149045 Msa0209510:intron 60.0%
TTCCTGGACCCTGCGTATGC+GGG - chr2_1:48149027-48149046 Msa0209510:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr2_1:48149044-48149063 Msa0209510:intron 60.0%
!! GACCGCTGGCTCAAACCAAC+AGG - chr2_1:48149740-48149759 Msa0209510:intron 60.0%
GCCAATCGCCCATAGCTGAC+TGG + chr2_1:48150833-48150852 None:intergenic 60.0%
CTGGATCCTCACTTCGTCCC+TGG + chr2_1:48151994-48152013 None:intergenic 60.0%
CTGTACACACTGGGGTCAGC+AGG - chr2_1:48152057-48152076 Msa0209510:intron 60.0%
TCTTCCGAAAACGCCGCCGC+TGG - chr2_1:48148404-48148423 Msa0209510:three_prime_UTR 65.0%
CGCATACGCAGGGTCCAGGA+AGG + chr2_1:48149028-48149047 None:intergenic 65.0%
TCCGAAAACGCCGCCGCTGG+TGG - chr2_1:48148407-48148426 Msa0209510:three_prime_UTR 70.0%
! GCCACCAGCGGCGGCGTTTT+CGG + chr2_1:48148411-48148430 None:intergenic 70.0%
! CTTTGGGGACGGCGGTGCCT+CGG + chr2_1:48148433-48148452 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+AGG + chr2_1:48149032-48149051 None:intergenic 70.0%
! AACGCCGCCGCTGGTGGCCG+AGG - chr2_1:48148413-48148432 Msa0209510:three_prime_UTR 80.0%
! GGTGCCTCGGCCACCAGCGG+CGG + chr2_1:48148420-48148439 None:intergenic 80.0%
! GGCGGTGCCTCGGCCACCAG+CGG + chr2_1:48148423-48148442 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 48148296 48153382 48148296 ID=Msa0209510;Name=Msa0209510
chr2_1 mRNA 48148296 48153382 48148296 ID=Msa0209510-mRNA-1;Parent=Msa0209510;Name=Msa0209510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=99|0.71|0.75|1|0.71|0.62|8|511|343
chr2_1 exon 48148296 48148761 48148296 ID=Msa0209510-mRNA-1:exon:13461;Parent=Msa0209510-mRNA-1
chr2_1 exon 48149055 48149276 48149055 ID=Msa0209510-mRNA-1:exon:13460;Parent=Msa0209510-mRNA-1
chr2_1 exon 48149600 48149683 48149600 ID=Msa0209510-mRNA-1:exon:13459;Parent=Msa0209510-mRNA-1
chr2_1 exon 48149763 48149948 48149763 ID=Msa0209510-mRNA-1:exon:13458;Parent=Msa0209510-mRNA-1
chr2_1 exon 48150791 48150920 48150791 ID=Msa0209510-mRNA-1:exon:13457;Parent=Msa0209510-mRNA-1
chr2_1 exon 48151910 48152015 48151910 ID=Msa0209510-mRNA-1:exon:13456;Parent=Msa0209510-mRNA-1
chr2_1 exon 48152854 48153013 48152854 ID=Msa0209510-mRNA-1:exon:13455;Parent=Msa0209510-mRNA-1
chr2_1 exon 48153095 48153382 48153095 ID=Msa0209510-mRNA-1:exon:13454;Parent=Msa0209510-mRNA-1
chr2_1 five_prime_UTR 48153284 48153382 48153284 ID=Msa0209510-mRNA-1:five_prime_utr;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48153095 48153283 48153095 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48152854 48153013 48152854 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48151910 48152015 48151910 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48150791 48150920 48150791 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48149763 48149948 48149763 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48149600 48149683 48149600 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 CDS 48149100 48149276 48149100 ID=Msa0209510-mRNA-1:cds;Parent=Msa0209510-mRNA-1
chr2_1 three_prime_UTR 48149055 48149099 48149055 ID=Msa0209510-mRNA-1:three_prime_utr;Parent=Msa0209510-mRNA-1
chr2_1 three_prime_UTR 48148296 48148761 48148296 ID=Msa0209510-mRNA-1:three_prime_utr;Parent=Msa0209510-mRNA-1
Gene Sequence

>Msa0209510

ATGGGCACTTCTTCCGAAAACGCCGCCGCTGGTGGCCGAGGCACCGCCGTCCCCAAAGAAGTCGACTACGCTAATTACTTTTGCACCTACTCCTTTCTCTATCACCAAAAAGAAATGCTCTCAGATCGTGTTCGTATGGATGCTTACTTCAACGCTGTTTTTGAAAACAAACACCACTTTAAAGACAAGGTTGTTTTGGATGTTGGTGCTGGAAGTGGGATTCTTGCTATATGGTCAGCTCAAGCAGGTGCAAAGAAGGTTTATGCTGTTGAAGCTACTAAGATGTCGGAACATGCTCGTGCGCTTGTGAAATCGAATAATCTTGAGCAGGTTGTTGAGGTTATTGAGGTTGATGTTATCATCTCTGAATGGATGGGTTATTTTCTTTTGCGAGAATCTATGTTTGATTCTGTCATATGTGCTCGTGACCGCTGGCTCAAACCAACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCCATTAGGACTGGGATAGTAGAACAAAAGTTGGGCGATTACCAGTCAGCTATGGGCGATTGGCACAACTTTGTCGATGAAACAAAAGCCTTCTATGGTACATCGTTGTGGAGCAATCTTCATCCACATCAAGTCATAGGAACTGCTGGTCTAGTAAAGGAAATTGACTGTTTGACTGCCACAGTGGCAGACATAGAGGAAGTTAGATCAAACTTTTCTCTGTCAATAACCACAGAGAACACAAAACTGTGTGGATATGGAGGATGGTTTGATGTACATTTCCGGGGACGAAGTGAGGATCCAGCTGAACATGAGATTGAGTTAACCACCGCTCCTAGTGTAGATTACTGTACACACTGGGGTCAGCAGGTTTTCCTCTTAAATCCTCCTACACATGTGAGTGATGGTGATGACCTAACTGTTAATTTTCTAATGAGTCGCTCGAAGGGAAACCATCGTTTAATGGAGGTTGAGCTTGGCTGTGAGATTCAAAAGCATTCGGGCAAGCTTGCTACACCTTTCAAAAATAAGTACTATATTGAATGA
Protein sequence

>Msa0209510

MGTSSENAAAGGRGTAVPKEVDYANYFCTYSFLYHQKEMLSDRVRMDAYFNAVFENKHHFKDKVVLDVGAGSGILAIWSAQAGAKKVYAVEATKMSEHARALVKSNNLEQVVEVIEVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWMAPIRTGIVEQKLGDYQSAMGDWHNFVDETKAFYGTSLWSNLHPHQVIGTAGLVKEIDCLTATVADIEEVRSNFSLSITTENTKLCGYGGWFDVHFRGRSEDPAEHEIELTTAPSVDYCTHWGQQVFLLNPPTHVSDGDDLTVNFLMSRSKGNHRLMEVELGCEIQKHSGKLATPFKNKYYIE*