AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492920 MtrunA17_Chr3g0085861 96.241 133 5 0 1 133 1 133 2.54e-91 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492920 AT4G31560.1 46.897 145 55 7 1 132 1 136 3.99e-26 95.9

Find 53 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCCGCAACAGGCCTAAA+AGG 0.219871 3_4:+17111349 Msa0492920:CDS
CTTCACATTCCCTTCCTTGC+GGG 0.249184 3_4:+17109592 Msa0492920:CDS
TCCTTCCACGTGGCCGCAAC+AGG 0.325588 3_4:+17111340 Msa0492920:CDS
GTGACCACCGTCGCGGTTCT+CGG 0.360693 3_4:-17109665 None:intergenic
TATAAAGGGTTTATAATGTA+AGG 0.367183 3_4:+17111542 Msa0492920:three_prime_UTR
TCTGATATGTAAGCTTATAA+AGG 0.377323 3_4:+17111527 Msa0492920:three_prime_UTR
TTACCTCTTCGTAGAAATCT+TGG 0.389702 3_4:-17109793 None:intergenic
CTGATATGTAAGCTTATAAA+GGG 0.391777 3_4:+17111528 Msa0492920:three_prime_UTR
CTCTTCTCCTCACCGGCTGC+CGG 0.412074 3_4:+17109639 Msa0492920:CDS
AATGTGAAGGAATGAGAAAT+TGG 0.412756 3_4:-17109578 None:intergenic
GCACTTCCTCTTTCTCTCCT+CGG 0.413957 3_4:+17109728 Msa0492920:CDS
AAAAGGGAAGCTTAAATTTG+AGG 0.419496 3_4:+17111366 Msa0492920:exon
AATTAAATTCTTAAATGAAA+AGG 0.427139 3_4:+17111620 Msa0492920:three_prime_UTR
GAAGGTGGGGCCCGCAAGGA+AGG 0.432992 3_4:-17109602 None:intergenic
TAGGGGAGGTGTTTATCTAT+AGG 0.456479 3_4:+17111425 Msa0492920:intron
TCTCTTAGTTCATGTTCCAT+TGG 0.463587 3_4:+17111457 Msa0492920:three_prime_UTR
GCCTGTTGCGGCCACGTGGA+AGG 0.472208 3_4:-17111341 None:intergenic
CCGTCGCGGTTCTCGGTCTC+CGG 0.473735 3_4:-17109658 None:intergenic
GGCGAAGAACGAAGCTATCA+TGG 0.476969 3_4:+17111242 Msa0492920:CDS
TTCACAAGAAGAACAAGAAC+CGG 0.477138 3_4:+17111317 Msa0492920:CDS
GCGACGGTGGTCACACGTGC+TGG 0.481713 3_4:+17109674 Msa0492920:CDS
GGAAATAACGTCGCCATGGA+TGG 0.482119 3_4:-17109545 None:intergenic
GGTTCTCGGTCTCCGGCAGC+CGG 0.492759 3_4:-17109651 None:intergenic
TTGCGGCCACGTGGAAGGAC+CGG 0.505790 3_4:-17111336 None:intergenic
TGGCCGCAACAGGCCTAAAA+GGG 0.513982 3_4:+17111350 Msa0492920:CDS
AAGGTGGGGCCCGCAAGGAA+GGG 0.516105 3_4:-17109601 None:intergenic
GTTACACCGAGGAGAGAAAG+AGG 0.516375 3_4:-17109734 None:intergenic
GGCGGAGAGTTGCGTGAAGG+TGG 0.517310 3_4:-17109617 None:intergenic
TTTCACTGCTCTTCGAATTG+GGG 0.518302 3_4:+17109760 Msa0492920:CDS
CGGCAGCCGGTGAGGAGAAG+AGG 0.525624 3_4:-17109638 None:intergenic
CCTTCACATTCCCTTCCTTG+CGG 0.535091 3_4:+17109591 Msa0492920:CDS
AATTGACGAAGAGGAAGAAG+AGG 0.548103 3_4:+17111266 Msa0492920:CDS
TCGGTCTCCGGCAGCCGGTG+AGG 0.549955 3_4:-17109646 None:intergenic
GCGGAGAGTTGCGTGAAGGT+GGG 0.550581 3_4:-17109616 None:intergenic
GCGTGAAGGTGGGGCCCGCA+AGG 0.554379 3_4:-17109606 None:intergenic
CAGCCGGTGAGGAGAAGAGG+CGG 0.566616 3_4:-17109635 None:intergenic
CGGAGAGTTGCGTGAAGGTG+GGG 0.577510 3_4:-17109615 None:intergenic
AAATGCTAGCAGATAACCAA+TGG 0.578436 3_4:-17111473 None:intergenic
TGAGAAATTGGATTAGAGAG+TGG 0.588473 3_4:-17109566 None:intergenic
ATTACATTGTAATCCATCCA+TGG 0.592299 3_4:+17109532 Msa0492920:exon
TGACCAAGATTTCTACGAAG+AGG 0.594220 3_4:+17109790 Msa0492920:CDS
TGTAATCTATTTGTGTAGTG+TGG 0.607588 3_4:-17109515 None:intergenic
TATCATGGAAATTGACGAAG+AGG 0.608853 3_4:+17111257 Msa0492920:CDS
TCTCCGCCTCTTCTCCTCAC+CGG 0.610510 3_4:+17109632 Msa0492920:CDS
GAGTGGAAATAACGTCGCCA+TGG 0.612641 3_4:-17109549 None:intergenic
AGAGGCGGAGAGTTGCGTGA+AGG 0.613491 3_4:-17109620 None:intergenic
TTAGGCCTGTTGCGGCCACG+TGG 0.641712 3_4:-17111345 None:intergenic
GAGACCGAGAACCGCGACGG+TGG 0.655284 3_4:+17109661 Msa0492920:CDS
CCGGAGACCGAGAACCGCGA+CGG 0.661053 3_4:+17109658 Msa0492920:CDS
CCGCAAGGAAGGGAATGTGA+AGG 0.673491 3_4:-17109591 None:intergenic
AGCACGTGTGACCACCGTCG+CGG 0.691929 3_4:-17109672 None:intergenic
CAAGAACCGGTCCTTCCACG+TGG 0.698218 3_4:+17111330 Msa0492920:CDS
CAGTGAAAACAGTTACACCG+AGG 0.760295 3_4:-17109745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTAAGAATTTAAT+TGG - chr3_4:17111621-17111640 None:intergenic 10.0%
!! AATTAAATTCTTAAATGAAA+AGG + chr3_4:17111620-17111639 Msa0492920:three_prime_UTR 10.0%
!!! TTTTCATTTAAGAATTTAAT+TGG - chr3_4:17111621-17111640 None:intergenic 10.0%
!! AATTAAATTCTTAAATGAAA+AGG + chr3_4:17111620-17111639 Msa0492920:three_prime_UTR 10.0%
!!! CATCTTTAAAAATAAATCTT+TGG + chr3_4:17110821-17110840 Msa0492920:intron 15.0%
!! AGTATATTAAATATTCATTG+AGG - chr3_4:17110979-17110998 None:intergenic 15.0%
!!! TAGTAATTTTTTATCTACAT+TGG - chr3_4:17111582-17111601 None:intergenic 15.0%
!!! CATCTTTAAAAATAAATCTT+TGG + chr3_4:17110821-17110840 Msa0492920:intron 15.0%
!! AGTATATTAAATATTCATTG+AGG - chr3_4:17110979-17110998 None:intergenic 15.0%
!!! TAGTAATTTTTTATCTACAT+TGG - chr3_4:17111582-17111601 None:intergenic 15.0%
!!! TGTGTAAAATTGATTGATTT+TGG - chr3_4:17110161-17110180 None:intergenic 20.0%
!!! AACTTCAAGTTTATCAATTA+TGG + chr3_4:17110326-17110345 Msa0492920:intron 20.0%
!!! AAATTGATTTTGAGATGTTT+GGG - chr3_4:17110379-17110398 None:intergenic 20.0%
!!! AAAATTGATTTTGAGATGTT+TGG - chr3_4:17110380-17110399 None:intergenic 20.0%
!! GAAATCTAAATTACAGTAAT+TGG - chr3_4:17110469-17110488 None:intergenic 20.0%
!! TCATGTTAGAAATTTCTTTA+AGG - chr3_4:17110717-17110736 None:intergenic 20.0%
!!! TGAAAATTTCTCTTATGTTT+TGG + chr3_4:17110898-17110917 Msa0492920:intron 20.0%
!!! GAAAATTTCTCTTATGTTTT+GGG + chr3_4:17110899-17110918 Msa0492920:intron 20.0%
!!! ATGTTTTTTTTAATACCAGA+TGG + chr3_4:17111221-17111240 Msa0492920:intron 20.0%
!! TATAAAGGGTTTATAATGTA+AGG + chr3_4:17111542-17111561 Msa0492920:three_prime_UTR 20.0%
!!! TGTGTAAAATTGATTGATTT+TGG - chr3_4:17110161-17110180 None:intergenic 20.0%
!!! AACTTCAAGTTTATCAATTA+TGG + chr3_4:17110326-17110345 Msa0492920:intron 20.0%
!!! AAATTGATTTTGAGATGTTT+GGG - chr3_4:17110379-17110398 None:intergenic 20.0%
!!! AAAATTGATTTTGAGATGTT+TGG - chr3_4:17110380-17110399 None:intergenic 20.0%
!! GAAATCTAAATTACAGTAAT+TGG - chr3_4:17110469-17110488 None:intergenic 20.0%
!! TCATGTTAGAAATTTCTTTA+AGG - chr3_4:17110717-17110736 None:intergenic 20.0%
!!! TGAAAATTTCTCTTATGTTT+TGG + chr3_4:17110898-17110917 Msa0492920:intron 20.0%
!!! GAAAATTTCTCTTATGTTTT+GGG + chr3_4:17110899-17110918 Msa0492920:intron 20.0%
!!! ATGTTTTTTTTAATACCAGA+TGG + chr3_4:17111221-17111240 Msa0492920:intron 20.0%
!! TATAAAGGGTTTATAATGTA+AGG + chr3_4:17111542-17111561 Msa0492920:three_prime_UTR 20.0%
!!! CAAAATCGTTTTCTAAAGTT+GGG + chr3_4:17109826-17109845 Msa0492920:intron 25.0%
! AAACAAAGAATCACATTACT+GGG - chr3_4:17109859-17109878 None:intergenic 25.0%
! TTTGATGAAATTTCTCAACT+GGG + chr3_4:17109927-17109946 Msa0492920:intron 25.0%
! AGTAGAATCAAAATCCAAAA+TGG - chr3_4:17110120-17110139 None:intergenic 25.0%
!! TACACATTTAGAATCACTTA+TGG + chr3_4:17110175-17110194 Msa0492920:intron 25.0%
!! ACACATTTAGAATCACTTAT+GGG + chr3_4:17110176-17110195 Msa0492920:intron 25.0%
!!! ACTTACTTTTAGCCTATATT+TGG - chr3_4:17110218-17110237 None:intergenic 25.0%
!!! ATCAATTTTAATTGAGTGCA+AGG - chr3_4:17110672-17110691 None:intergenic 25.0%
! ACAATCTGGAAAATTTCTTA+AGG - chr3_4:17110769-17110788 None:intergenic 25.0%
! TATTAGTGAGTTAACTGTTT+CGG - chr3_4:17111022-17111041 None:intergenic 25.0%
! TTATAATTACCAGCTCAATA+AGG + chr3_4:17111077-17111096 Msa0492920:intron 25.0%
! AATTAGAAATTTGTGAACAG+AGG - chr3_4:17111122-17111141 None:intergenic 25.0%
! CAAATATTTCCAAAAAAGTG+TGG - chr3_4:17111168-17111187 None:intergenic 25.0%
! AAAAACATGTCACAAAAACA+GGG - chr3_4:17111209-17111228 None:intergenic 25.0%
! AAAAAACATGTCACAAAAAC+AGG - chr3_4:17111210-17111229 None:intergenic 25.0%
! AGTAAACTTGCAAATGAATA+GGG + chr3_4:17111397-17111416 Msa0492920:intron 25.0%
! TCTGATATGTAAGCTTATAA+AGG + chr3_4:17111527-17111546 Msa0492920:three_prime_UTR 25.0%
! CTGATATGTAAGCTTATAAA+GGG + chr3_4:17111528-17111547 Msa0492920:three_prime_UTR 25.0%
!!! CAAAATCGTTTTCTAAAGTT+GGG + chr3_4:17109826-17109845 Msa0492920:intron 25.0%
! AAACAAAGAATCACATTACT+GGG - chr3_4:17109859-17109878 None:intergenic 25.0%
! TTTGATGAAATTTCTCAACT+GGG + chr3_4:17109927-17109946 Msa0492920:intron 25.0%
! AGTAGAATCAAAATCCAAAA+TGG - chr3_4:17110120-17110139 None:intergenic 25.0%
!! TACACATTTAGAATCACTTA+TGG + chr3_4:17110175-17110194 Msa0492920:intron 25.0%
!! ACACATTTAGAATCACTTAT+GGG + chr3_4:17110176-17110195 Msa0492920:intron 25.0%
!!! ACTTACTTTTAGCCTATATT+TGG - chr3_4:17110218-17110237 None:intergenic 25.0%
!!! ATCAATTTTAATTGAGTGCA+AGG - chr3_4:17110672-17110691 None:intergenic 25.0%
! ACAATCTGGAAAATTTCTTA+AGG - chr3_4:17110769-17110788 None:intergenic 25.0%
! TATTAGTGAGTTAACTGTTT+CGG - chr3_4:17111022-17111041 None:intergenic 25.0%
! TTATAATTACCAGCTCAATA+AGG + chr3_4:17111077-17111096 Msa0492920:intron 25.0%
! AATTAGAAATTTGTGAACAG+AGG - chr3_4:17111122-17111141 None:intergenic 25.0%
! CAAATATTTCCAAAAAAGTG+TGG - chr3_4:17111168-17111187 None:intergenic 25.0%
! AAAAACATGTCACAAAAACA+GGG - chr3_4:17111209-17111228 None:intergenic 25.0%
! AAAAAACATGTCACAAAAAC+AGG - chr3_4:17111210-17111229 None:intergenic 25.0%
! AGTAAACTTGCAAATGAATA+GGG + chr3_4:17111397-17111416 Msa0492920:intron 25.0%
! TCTGATATGTAAGCTTATAA+AGG + chr3_4:17111527-17111546 Msa0492920:three_prime_UTR 25.0%
! CTGATATGTAAGCTTATAAA+GGG + chr3_4:17111528-17111547 Msa0492920:three_prime_UTR 25.0%
TGTAATCTATTTGTGTAGTG+TGG - chr3_4:17109518-17109537 None:intergenic 30.0%
ATTACATTGTAATCCATCCA+TGG + chr3_4:17109532-17109551 Msa0492920:exon 30.0%
AATGTGAAGGAATGAGAAAT+TGG - chr3_4:17109581-17109600 None:intergenic 30.0%
!!! TAGAAAACGATTTTGGTTTG+TGG - chr3_4:17109821-17109840 None:intergenic 30.0%
!! CCAACTTTAGAAAACGATTT+TGG - chr3_4:17109828-17109847 None:intergenic 30.0%
!!! CCAAAATCGTTTTCTAAAGT+TGG + chr3_4:17109825-17109844 Msa0492920:intron 30.0%
CAAACAAAGAATCACATTAC+TGG - chr3_4:17109860-17109879 None:intergenic 30.0%
GTTTGATGAAATTTCTCAAC+TGG + chr3_4:17109926-17109945 Msa0492920:intron 30.0%
! CTTCAACTTAGAATCCATTT+TGG + chr3_4:17110103-17110122 Msa0492920:intron 30.0%
TGATGCATTCGTTTATGTAA+AGG + chr3_4:17110261-17110280 Msa0492920:intron 30.0%
TAACAAGTGTTAACAGACAT+AGG - chr3_4:17110543-17110562 None:intergenic 30.0%
GACAAACGATATATCTATCT+AGG + chr3_4:17110567-17110586 Msa0492920:intron 30.0%
TTTCATCATAACTTGAGAGA+TGG + chr3_4:17110874-17110893 Msa0492920:intron 30.0%
ACAGTTAACTCACTAATATC+TGG + chr3_4:17111024-17111043 Msa0492920:intron 30.0%
ATAGATATTCCTTATTGAGC+TGG - chr3_4:17111089-17111108 None:intergenic 30.0%
!!! GATTCTTAACCACACTTTTT+TGG + chr3_4:17111156-17111175 Msa0492920:intron 30.0%
! CAAATTTAAGCTTCCCTTTT+AGG - chr3_4:17111366-17111385 None:intergenic 30.0%
AAAAGGGAAGCTTAAATTTG+AGG + chr3_4:17111366-17111385 Msa0492920:exon 30.0%
CAGTAAACTTGCAAATGAAT+AGG + chr3_4:17111396-17111415 Msa0492920:intron 30.0%
TGTAATCTATTTGTGTAGTG+TGG - chr3_4:17109518-17109537 None:intergenic 30.0%
ATTACATTGTAATCCATCCA+TGG + chr3_4:17109532-17109551 Msa0492920:exon 30.0%
AATGTGAAGGAATGAGAAAT+TGG - chr3_4:17109581-17109600 None:intergenic 30.0%
!!! TAGAAAACGATTTTGGTTTG+TGG - chr3_4:17109821-17109840 None:intergenic 30.0%
!! CCAACTTTAGAAAACGATTT+TGG - chr3_4:17109828-17109847 None:intergenic 30.0%
!!! CCAAAATCGTTTTCTAAAGT+TGG + chr3_4:17109825-17109844 Msa0492920:intron 30.0%
CAAACAAAGAATCACATTAC+TGG - chr3_4:17109860-17109879 None:intergenic 30.0%
GTTTGATGAAATTTCTCAAC+TGG + chr3_4:17109926-17109945 Msa0492920:intron 30.0%
! CTTCAACTTAGAATCCATTT+TGG + chr3_4:17110103-17110122 Msa0492920:intron 30.0%
TGATGCATTCGTTTATGTAA+AGG + chr3_4:17110261-17110280 Msa0492920:intron 30.0%
TAACAAGTGTTAACAGACAT+AGG - chr3_4:17110543-17110562 None:intergenic 30.0%
GACAAACGATATATCTATCT+AGG + chr3_4:17110567-17110586 Msa0492920:intron 30.0%
TTTCATCATAACTTGAGAGA+TGG + chr3_4:17110874-17110893 Msa0492920:intron 30.0%
ACAGTTAACTCACTAATATC+TGG + chr3_4:17111024-17111043 Msa0492920:intron 30.0%
ATAGATATTCCTTATTGAGC+TGG - chr3_4:17111089-17111108 None:intergenic 30.0%
!!! GATTCTTAACCACACTTTTT+TGG + chr3_4:17111156-17111175 Msa0492920:intron 30.0%
! CAAATTTAAGCTTCCCTTTT+AGG - chr3_4:17111366-17111385 None:intergenic 30.0%
AAAAGGGAAGCTTAAATTTG+AGG + chr3_4:17111366-17111385 Msa0492920:exon 30.0%
CAGTAAACTTGCAAATGAAT+AGG + chr3_4:17111396-17111415 Msa0492920:intron 30.0%
! TGAGAAATTGGATTAGAGAG+TGG - chr3_4:17109569-17109588 None:intergenic 35.0%
! TTTTCACTGCTCTTCGAATT+GGG + chr3_4:17109759-17109778 Msa0492920:CDS 35.0%
TTACCTCTTCGTAGAAATCT+TGG - chr3_4:17109796-17109815 None:intergenic 35.0%
ATACAAGTAGTGTTGTCATC+TGG + chr3_4:17109982-17110001 Msa0492920:intron 35.0%
TACAAGTAGTGTTGTCATCT+GGG + chr3_4:17109983-17110002 Msa0492920:intron 35.0%
! ATGGATTCTAAGTTGAAGCT+AGG - chr3_4:17110101-17110120 None:intergenic 35.0%
! CCTATATTTGGTTCCACATT+TGG - chr3_4:17110206-17110225 None:intergenic 35.0%
CCAAATGTGGAACCAAATAT+AGG + chr3_4:17110203-17110222 Msa0492920:intron 35.0%
TTCGTTTATGTAAAGGTGAG+TGG + chr3_4:17110268-17110287 Msa0492920:intron 35.0%
ACATATACGCTCAGCAATAT+AGG + chr3_4:17110631-17110650 Msa0492920:intron 35.0%
TCACATAGCTAAAATTGCAC+AGG - chr3_4:17110740-17110759 None:intergenic 35.0%
TATATCACATCTCGACAATC+TGG - chr3_4:17110783-17110802 None:intergenic 35.0%
TATCATGGAAATTGACGAAG+AGG + chr3_4:17111257-17111276 Msa0492920:CDS 35.0%
! GGATAATGATGATGATGATG+TGG + chr3_4:17111287-17111306 Msa0492920:CDS 35.0%
TTCACAAGAAGAACAAGAAC+CGG + chr3_4:17111317-17111336 Msa0492920:CDS 35.0%
AAACTTGCAAATGAATAGGG+AGG + chr3_4:17111400-17111419 Msa0492920:intron 35.0%
CAAATGAATAGGGAGGAATA+GGG + chr3_4:17111407-17111426 Msa0492920:intron 35.0%
AAATGAATAGGGAGGAATAG+GGG + chr3_4:17111408-17111427 Msa0492920:intron 35.0%
TCTCTTAGTTCATGTTCCAT+TGG + chr3_4:17111457-17111476 Msa0492920:three_prime_UTR 35.0%
AAATGCTAGCAGATAACCAA+TGG - chr3_4:17111476-17111495 None:intergenic 35.0%
! TGAGAAATTGGATTAGAGAG+TGG - chr3_4:17109569-17109588 None:intergenic 35.0%
! TTTTCACTGCTCTTCGAATT+GGG + chr3_4:17109759-17109778 Msa0492920:CDS 35.0%
TTACCTCTTCGTAGAAATCT+TGG - chr3_4:17109796-17109815 None:intergenic 35.0%
ATACAAGTAGTGTTGTCATC+TGG + chr3_4:17109982-17110001 Msa0492920:intron 35.0%
TACAAGTAGTGTTGTCATCT+GGG + chr3_4:17109983-17110002 Msa0492920:intron 35.0%
! ATGGATTCTAAGTTGAAGCT+AGG - chr3_4:17110101-17110120 None:intergenic 35.0%
! CCTATATTTGGTTCCACATT+TGG - chr3_4:17110206-17110225 None:intergenic 35.0%
CCAAATGTGGAACCAAATAT+AGG + chr3_4:17110203-17110222 Msa0492920:intron 35.0%
TTCGTTTATGTAAAGGTGAG+TGG + chr3_4:17110268-17110287 Msa0492920:intron 35.0%
ACATATACGCTCAGCAATAT+AGG + chr3_4:17110631-17110650 Msa0492920:intron 35.0%
TCACATAGCTAAAATTGCAC+AGG - chr3_4:17110740-17110759 None:intergenic 35.0%
TATATCACATCTCGACAATC+TGG - chr3_4:17110783-17110802 None:intergenic 35.0%
TATCATGGAAATTGACGAAG+AGG + chr3_4:17111257-17111276 Msa0492920:CDS 35.0%
! GGATAATGATGATGATGATG+TGG + chr3_4:17111287-17111306 Msa0492920:CDS 35.0%
TTCACAAGAAGAACAAGAAC+CGG + chr3_4:17111317-17111336 Msa0492920:CDS 35.0%
AAACTTGCAAATGAATAGGG+AGG + chr3_4:17111400-17111419 Msa0492920:intron 35.0%
CAAATGAATAGGGAGGAATA+GGG + chr3_4:17111407-17111426 Msa0492920:intron 35.0%
AAATGAATAGGGAGGAATAG+GGG + chr3_4:17111408-17111427 Msa0492920:intron 35.0%
TCTCTTAGTTCATGTTCCAT+TGG + chr3_4:17111457-17111476 Msa0492920:three_prime_UTR 35.0%
AAATGCTAGCAGATAACCAA+TGG - chr3_4:17111476-17111495 None:intergenic 35.0%
! GTTTTCACTGCTCTTCGAAT+TGG + chr3_4:17109758-17109777 Msa0492920:CDS 40.0%
TTTCACTGCTCTTCGAATTG+GGG + chr3_4:17109760-17109779 Msa0492920:CDS 40.0%
TGACCAAGATTTCTACGAAG+AGG + chr3_4:17109790-17109809 Msa0492920:CDS 40.0%
ACAAGTAGTGTTGTCATCTG+GGG + chr3_4:17109984-17110003 Msa0492920:intron 40.0%
TCCACTAAGCAACTCTACAA+CGG - chr3_4:17110436-17110455 None:intergenic 40.0%
GGAAGATTAACCAGCTCAAA+AGG - chr3_4:17110508-17110527 None:intergenic 40.0%
ACATTCTAAGTCATGCACCA+TGG - chr3_4:17110606-17110625 None:intergenic 40.0%
AATTGACGAAGAGGAAGAAG+AGG + chr3_4:17111266-17111285 Msa0492920:CDS 40.0%
GCAAATGAATAGGGAGGAAT+AGG + chr3_4:17111406-17111425 Msa0492920:intron 40.0%
!! TAGGGGAGGTGTTTATCTAT+AGG + chr3_4:17111425-17111444 Msa0492920:intron 40.0%
! GTTTTCACTGCTCTTCGAAT+TGG + chr3_4:17109758-17109777 Msa0492920:CDS 40.0%
TTTCACTGCTCTTCGAATTG+GGG + chr3_4:17109760-17109779 Msa0492920:CDS 40.0%
TGACCAAGATTTCTACGAAG+AGG + chr3_4:17109790-17109809 Msa0492920:CDS 40.0%
ACAAGTAGTGTTGTCATCTG+GGG + chr3_4:17109984-17110003 Msa0492920:intron 40.0%
TCCACTAAGCAACTCTACAA+CGG - chr3_4:17110436-17110455 None:intergenic 40.0%
GGAAGATTAACCAGCTCAAA+AGG - chr3_4:17110508-17110527 None:intergenic 40.0%
ACATTCTAAGTCATGCACCA+TGG - chr3_4:17110606-17110625 None:intergenic 40.0%
AATTGACGAAGAGGAAGAAG+AGG + chr3_4:17111266-17111285 Msa0492920:CDS 40.0%
GCAAATGAATAGGGAGGAAT+AGG + chr3_4:17111406-17111425 Msa0492920:intron 40.0%
!! TAGGGGAGGTGTTTATCTAT+AGG + chr3_4:17111425-17111444 Msa0492920:intron 40.0%
CAGTGAAAACAGTTACACCG+AGG - chr3_4:17109748-17109767 None:intergenic 45.0%
CAAGTAGTGTTGTCATCTGG+GGG + chr3_4:17109985-17110004 Msa0492920:intron 45.0%
ACTTATGGGTGCTCCAAATG+TGG + chr3_4:17110190-17110209 Msa0492920:intron 45.0%
TGAGATGTTTGGGTGCTCTT+GGG - chr3_4:17110369-17110388 None:intergenic 45.0%
TTGAGATGTTTGGGTGCTCT+TGG - chr3_4:17110370-17110389 None:intergenic 45.0%
TCCGTTGTAGAGTTGCTTAG+TGG + chr3_4:17110432-17110451 Msa0492920:intron 45.0%
CCAGCTCAAAAGGCTTAGTT+TGG - chr3_4:17110498-17110517 None:intergenic 45.0%
! CCAAACTAAGCCTTTTGAGC+TGG + chr3_4:17110495-17110514 Msa0492920:intron 45.0%
AGACATAGGCGCAAGTCAAA+GGG - chr3_4:17110529-17110548 None:intergenic 45.0%
! CAGACGTGTGCATGGATTAA+AGG - chr3_4:17110948-17110967 None:intergenic 45.0%
TAACTGATCAGACGTGTGCA+TGG - chr3_4:17110956-17110975 None:intergenic 45.0%
CAGTGAAAACAGTTACACCG+AGG - chr3_4:17109748-17109767 None:intergenic 45.0%
CAAGTAGTGTTGTCATCTGG+GGG + chr3_4:17109985-17110004 Msa0492920:intron 45.0%
ACTTATGGGTGCTCCAAATG+TGG + chr3_4:17110190-17110209 Msa0492920:intron 45.0%
TGAGATGTTTGGGTGCTCTT+GGG - chr3_4:17110369-17110388 None:intergenic 45.0%
TTGAGATGTTTGGGTGCTCT+TGG - chr3_4:17110370-17110389 None:intergenic 45.0%
TCCGTTGTAGAGTTGCTTAG+TGG + chr3_4:17110432-17110451 Msa0492920:intron 45.0%
CCAGCTCAAAAGGCTTAGTT+TGG - chr3_4:17110498-17110517 None:intergenic 45.0%
! CCAAACTAAGCCTTTTGAGC+TGG + chr3_4:17110495-17110514 Msa0492920:intron 45.0%
AGACATAGGCGCAAGTCAAA+GGG - chr3_4:17110529-17110548 None:intergenic 45.0%
! CAGACGTGTGCATGGATTAA+AGG - chr3_4:17110948-17110967 None:intergenic 45.0%
TAACTGATCAGACGTGTGCA+TGG - chr3_4:17110956-17110975 None:intergenic 45.0%
GGAAATAACGTCGCCATGGA+TGG - chr3_4:17109548-17109567 None:intergenic 50.0%
GAGTGGAAATAACGTCGCCA+TGG - chr3_4:17109552-17109571 None:intergenic 50.0%
CCTTCACATTCCCTTCCTTG+CGG + chr3_4:17109591-17109610 Msa0492920:CDS 50.0%
CTTCACATTCCCTTCCTTGC+GGG + chr3_4:17109592-17109611 Msa0492920:CDS 50.0%
GCACTTCCTCTTTCTCTCCT+CGG + chr3_4:17109728-17109747 Msa0492920:CDS 50.0%
GTTACACCGAGGAGAGAAAG+AGG - chr3_4:17109737-17109756 None:intergenic 50.0%
TGTCGCTCACTTGGTTGAGT+AGG + chr3_4:17110013-17110032 Msa0492920:intron 50.0%
CAGACATAGGCGCAAGTCAA+AGG - chr3_4:17110530-17110549 None:intergenic 50.0%
!! TAGGAGTCTCTGAAGTGCCA+TGG + chr3_4:17110586-17110605 Msa0492920:intron 50.0%
TAGCTTCGTTCTTCGCCATC+TGG - chr3_4:17111239-17111258 None:intergenic 50.0%
GGCGAAGAACGAAGCTATCA+TGG + chr3_4:17111242-17111261 Msa0492920:CDS 50.0%
! CTTCCCTTTTAGGCCTGTTG+CGG - chr3_4:17111356-17111375 None:intergenic 50.0%
TGAATAGGGAGGAATAGGGG+AGG + chr3_4:17111411-17111430 Msa0492920:intron 50.0%
GGAAATAACGTCGCCATGGA+TGG - chr3_4:17109548-17109567 None:intergenic 50.0%
GAGTGGAAATAACGTCGCCA+TGG - chr3_4:17109552-17109571 None:intergenic 50.0%
CCTTCACATTCCCTTCCTTG+CGG + chr3_4:17109591-17109610 Msa0492920:CDS 50.0%
CTTCACATTCCCTTCCTTGC+GGG + chr3_4:17109592-17109611 Msa0492920:CDS 50.0%
GCACTTCCTCTTTCTCTCCT+CGG + chr3_4:17109728-17109747 Msa0492920:CDS 50.0%
GTTACACCGAGGAGAGAAAG+AGG - chr3_4:17109737-17109756 None:intergenic 50.0%
TGTCGCTCACTTGGTTGAGT+AGG + chr3_4:17110013-17110032 Msa0492920:intron 50.0%
CAGACATAGGCGCAAGTCAA+AGG - chr3_4:17110530-17110549 None:intergenic 50.0%
!! TAGGAGTCTCTGAAGTGCCA+TGG + chr3_4:17110586-17110605 Msa0492920:intron 50.0%
TAGCTTCGTTCTTCGCCATC+TGG - chr3_4:17111239-17111258 None:intergenic 50.0%
GGCGAAGAACGAAGCTATCA+TGG + chr3_4:17111242-17111261 Msa0492920:CDS 50.0%
! CTTCCCTTTTAGGCCTGTTG+CGG - chr3_4:17111356-17111375 None:intergenic 50.0%
TGAATAGGGAGGAATAGGGG+AGG + chr3_4:17111411-17111430 Msa0492920:intron 50.0%
CCGCAAGGAAGGGAATGTGA+AGG - chr3_4:17109594-17109613 None:intergenic 55.0%
TGGCCGCAACAGGCCTAAAA+GGG + chr3_4:17111350-17111369 Msa0492920:CDS 55.0%
CCGCAAGGAAGGGAATGTGA+AGG - chr3_4:17109594-17109613 None:intergenic 55.0%
TGGCCGCAACAGGCCTAAAA+GGG + chr3_4:17111350-17111369 Msa0492920:CDS 55.0%
CGGAGAGTTGCGTGAAGGTG+GGG - chr3_4:17109618-17109637 None:intergenic 60.0%
GCGGAGAGTTGCGTGAAGGT+GGG - chr3_4:17109619-17109638 None:intergenic 60.0%
AGAGGCGGAGAGTTGCGTGA+AGG - chr3_4:17109623-17109642 None:intergenic 60.0%
TCTCCGCCTCTTCTCCTCAC+CGG + chr3_4:17109632-17109651 Msa0492920:CDS 60.0%
! GGGGAGTTGTGTCGCTCACT+TGG + chr3_4:17110004-17110023 Msa0492920:intron 60.0%
CAAGAACCGGTCCTTCCACG+TGG + chr3_4:17111330-17111349 Msa0492920:CDS 60.0%
GTGGCCGCAACAGGCCTAAA+AGG + chr3_4:17111349-17111368 Msa0492920:CDS 60.0%
CGGAGAGTTGCGTGAAGGTG+GGG - chr3_4:17109618-17109637 None:intergenic 60.0%
GCGGAGAGTTGCGTGAAGGT+GGG - chr3_4:17109619-17109638 None:intergenic 60.0%
AGAGGCGGAGAGTTGCGTGA+AGG - chr3_4:17109623-17109642 None:intergenic 60.0%
TCTCCGCCTCTTCTCCTCAC+CGG + chr3_4:17109632-17109651 Msa0492920:CDS 60.0%
! GGGGAGTTGTGTCGCTCACT+TGG + chr3_4:17110004-17110023 Msa0492920:intron 60.0%
CAAGAACCGGTCCTTCCACG+TGG + chr3_4:17111330-17111349 Msa0492920:CDS 60.0%
GTGGCCGCAACAGGCCTAAA+AGG + chr3_4:17111349-17111368 Msa0492920:CDS 60.0%
AAGGTGGGGCCCGCAAGGAA+GGG - chr3_4:17109604-17109623 None:intergenic 65.0%
GGCGGAGAGTTGCGTGAAGG+TGG - chr3_4:17109620-17109639 None:intergenic 65.0%
CAGCCGGTGAGGAGAAGAGG+CGG - chr3_4:17109638-17109657 None:intergenic 65.0%
! CTCTTCTCCTCACCGGCTGC+CGG + chr3_4:17109639-17109658 Msa0492920:CDS 65.0%
GTGACCACCGTCGCGGTTCT+CGG - chr3_4:17109668-17109687 None:intergenic 65.0%
AGCACGTGTGACCACCGTCG+CGG - chr3_4:17109675-17109694 None:intergenic 65.0%
TTGCGGCCACGTGGAAGGAC+CGG - chr3_4:17111339-17111358 None:intergenic 65.0%
TCCTTCCACGTGGCCGCAAC+AGG + chr3_4:17111340-17111359 Msa0492920:CDS 65.0%
TTAGGCCTGTTGCGGCCACG+TGG - chr3_4:17111348-17111367 None:intergenic 65.0%
AAGGTGGGGCCCGCAAGGAA+GGG - chr3_4:17109604-17109623 None:intergenic 65.0%
GGCGGAGAGTTGCGTGAAGG+TGG - chr3_4:17109620-17109639 None:intergenic 65.0%
CAGCCGGTGAGGAGAAGAGG+CGG - chr3_4:17109638-17109657 None:intergenic 65.0%
! CTCTTCTCCTCACCGGCTGC+CGG + chr3_4:17109639-17109658 Msa0492920:CDS 65.0%
GTGACCACCGTCGCGGTTCT+CGG - chr3_4:17109668-17109687 None:intergenic 65.0%
AGCACGTGTGACCACCGTCG+CGG - chr3_4:17109675-17109694 None:intergenic 65.0%
TTGCGGCCACGTGGAAGGAC+CGG - chr3_4:17111339-17111358 None:intergenic 65.0%
TCCTTCCACGTGGCCGCAAC+AGG + chr3_4:17111340-17111359 Msa0492920:CDS 65.0%
TTAGGCCTGTTGCGGCCACG+TGG - chr3_4:17111348-17111367 None:intergenic 65.0%
GAAGGTGGGGCCCGCAAGGA+AGG - chr3_4:17109605-17109624 None:intergenic 70.0%
CGGCAGCCGGTGAGGAGAAG+AGG - chr3_4:17109641-17109660 None:intergenic 70.0%
GGTTCTCGGTCTCCGGCAGC+CGG - chr3_4:17109654-17109673 None:intergenic 70.0%
CCGTCGCGGTTCTCGGTCTC+CGG - chr3_4:17109661-17109680 None:intergenic 70.0%
CCGGAGACCGAGAACCGCGA+CGG + chr3_4:17109658-17109677 Msa0492920:CDS 70.0%
GAGACCGAGAACCGCGACGG+TGG + chr3_4:17109661-17109680 Msa0492920:CDS 70.0%
GCGACGGTGGTCACACGTGC+TGG + chr3_4:17109674-17109693 Msa0492920:CDS 70.0%
GCCTGTTGCGGCCACGTGGA+AGG - chr3_4:17111344-17111363 None:intergenic 70.0%
GAAGGTGGGGCCCGCAAGGA+AGG - chr3_4:17109605-17109624 None:intergenic 70.0%
CGGCAGCCGGTGAGGAGAAG+AGG - chr3_4:17109641-17109660 None:intergenic 70.0%
GGTTCTCGGTCTCCGGCAGC+CGG - chr3_4:17109654-17109673 None:intergenic 70.0%
CCGTCGCGGTTCTCGGTCTC+CGG - chr3_4:17109661-17109680 None:intergenic 70.0%
CCGGAGACCGAGAACCGCGA+CGG + chr3_4:17109658-17109677 Msa0492920:CDS 70.0%
GAGACCGAGAACCGCGACGG+TGG + chr3_4:17109661-17109680 Msa0492920:CDS 70.0%
GCGACGGTGGTCACACGTGC+TGG + chr3_4:17109674-17109693 Msa0492920:CDS 70.0%
GCCTGTTGCGGCCACGTGGA+AGG - chr3_4:17111344-17111363 None:intergenic 70.0%
GCGTGAAGGTGGGGCCCGCA+AGG - chr3_4:17109609-17109628 None:intergenic 75.0%
TCGGTCTCCGGCAGCCGGTG+AGG - chr3_4:17109649-17109668 None:intergenic 75.0%
GCGTGAAGGTGGGGCCCGCA+AGG - chr3_4:17109609-17109628 None:intergenic 75.0%
TCGGTCTCCGGCAGCCGGTG+AGG - chr3_4:17109649-17109668 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 17109466 17111663 17109466 ID=Msa0492920;Name=Msa0492920
chr3_4 mRNA 17109466 17111663 17109466 ID=Msa0492920-mRNA-1;Parent=Msa0492920;Name=Msa0492920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|1|1|1|0.5|0.33|3|238|133
chr3_4 exon 17109466 17109811 17109466 ID=Msa0492920-mRNA-1:exon:4823;Parent=Msa0492920-mRNA-1
chr3_4 exon 17111240 17111387 17111240 ID=Msa0492920-mRNA-1:exon:4824;Parent=Msa0492920-mRNA-1
chr3_4 exon 17111433 17111663 17111433 ID=Msa0492920-mRNA-1:exon:4825;Parent=Msa0492920-mRNA-1
chr3_4 five_prime_UTR 17109466 17109550 17109466 ID=Msa0492920-mRNA-1:five_prime_utr;Parent=Msa0492920-mRNA-1
chr3_4 CDS 17109551 17109811 17109551 ID=Msa0492920-mRNA-1:cds;Parent=Msa0492920-mRNA-1
chr3_4 CDS 17111240 17111380 17111240 ID=Msa0492920-mRNA-1:cds;Parent=Msa0492920-mRNA-1
chr3_4 three_prime_UTR 17111381 17111387 17111381 ID=Msa0492920-mRNA-1:three_prime_utr;Parent=Msa0492920-mRNA-1
chr3_4 three_prime_UTR 17111433 17111663 17111433 ID=Msa0492920-mRNA-1:three_prime_utr;Parent=Msa0492920-mRNA-1
Gene Sequence

>Msa0492920

ATGGCGACGTTATTTCCACTCTCTAATCCAATTTCTCATTCCTTCACATTCCCTTCCTTGCGGGCCCCACCTTCACGCAACTCTCCGCCTCTTCTCCTCACCGGCTGCCGGAGACCGAGAACCGCGACGGTGGTCACACGTGCTGGCGCAAGTACAAGTAGCTATGCTTTCGCGATTGCACTTCCTCTTTCTCTCCTCGGTGTAACTGTTTTCACTGCTCTTCGAATTGGGGAGAAGCTTGACCAAGATTTCTACGAAGAGATGGCGAAGAACGAAGCTATCATGGAAATTGACGAAGAGGAAGAAGAGGATAATGATGATGATGATGTGGAAACTTATTCACAAGAAGAACAAGAACCGGTCCTTCCACGTGGCCGCAACAGGCCTAAAAGGGAAGCTTAA

Protein sequence

>Msa0492920

MATLFPLSNPISHSFTFPSLRAPPSRNSPPLLLTGCRRPRTATVVTRAGASTSSYAFAIALPLSLLGVTVFTALRIGEKLDQDFYEEMAKNEAIMEIDEEEEEDNDDDDVETYSQEEQEPVLPRGRNRPKREA*