AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467070 MtrunA17_Chr3g0120741 88.520 331 27 5 1 327 1 324 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467070 AT2G04360.1 60.440 273 104 2 55 327 49 317 5.57e-120 348
Msa0467070 AT2G04360.2 52.548 314 104 3 55 327 49 358 9.29e-112 329
Msa0467070 AT2G04360.4 67.633 207 64 1 121 327 17 220 2.13e-102 300
Msa0467070 AT2G04360.3 56.422 218 90 3 55 271 49 262 5.09e-85 257

Find 88 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAACACTGGCACCATTT+TGG 0.187033 3_3:-68225069 Msa0467070:CDS
TGTTTCTGAATGGTATATTA+TGG 0.209988 3_3:-68226512 Msa0467070:CDS
ATATTACCGGTGTCTGGTTT+GGG 0.250210 3_3:+68226695 None:intergenic
ATGATATGACTGCTAGAAAA+TGG 0.306456 3_3:-68225039 Msa0467070:intron
AGTTTCATTGATACCATTGC+TGG 0.307701 3_3:-68224884 Msa0467070:CDS
AATCAGATATTGCTTGCTTC+GGG 0.314268 3_3:-68225424 Msa0467070:intron
GTTTCTGAATGGTATATTAT+GGG 0.317642 3_3:-68226511 Msa0467070:CDS
TTGAAATTGATTGTTGAGTT+TGG 0.330756 3_3:-68224727 Msa0467070:three_prime_UTR
AATTGTGTATTCATATTCAT+TGG 0.345004 3_3:+68224765 None:intergenic
ACAGGTTTGACAAAGGTTCT+TGG 0.347641 3_3:-68224915 Msa0467070:intron
ATATCATTGTAAACCCAAAA+TGG 0.351254 3_3:+68225055 None:intergenic
TTAAGTTGTGTTTCTTCAAC+AGG 0.358500 3_3:+68225687 None:intergenic
TATTATGGGTTTGTGGCCTT+TGG 0.361998 3_3:-68226497 Msa0467070:CDS
TCTGCAAAGATATGTCTAAA+TGG 0.362447 3_3:+68224619 None:intergenic
TATATTACCGGTGTCTGGTT+TGG 0.369304 3_3:+68226694 None:intergenic
GGTTTCCATAGCACAAAATA+AGG 0.372685 3_3:+68225720 None:intergenic
AGTTGAAAGAAGTTTGATTA+TGG 0.377746 3_3:-68227058 Msa0467070:exon
ATTTGCTTTCCCTGAAGTAC+TGG 0.383210 3_3:+68225344 None:intergenic
TTGCTGCTACACCATCATTT+CGG 0.385003 3_3:-68226876 Msa0467070:CDS
AGCAATGGTATCAATGAAAC+TGG 0.385121 3_3:+68224886 None:intergenic
AATGGATGTCAATATTGTTA+TGG 0.407950 3_3:+68224637 None:intergenic
AACAATAACAGTAGTGGCCT+CGG 0.412664 3_3:-68226959 Msa0467070:CDS
AAGTTACAAGTTACAAGATT+GGG 0.413662 3_3:+68227018 None:intergenic
GAAGTTACAAGTTACAAGAT+TGG 0.425120 3_3:+68227017 None:intergenic
ATAATTTACGCTAGTTTAGC+CGG 0.429459 3_3:-68225391 Msa0467070:CDS
TTGAATTTGAAAGGAGATGA+TGG 0.440690 3_3:-68226556 Msa0467070:CDS
AGACGTTGAACTTCTCTTCA+AGG 0.442929 3_3:+68224562 None:intergenic
GGTAACTTGACTCTCTTTGT+TGG 0.445634 3_3:+68226822 None:intergenic
TAGTATATATTACCGGTGTC+TGG 0.446627 3_3:+68226689 None:intergenic
ATATTGCTTGCTTCGGGGAT+AGG 0.448524 3_3:-68225418 Msa0467070:CDS
CTCCACAACACTGCTGTTGT+TGG 0.454329 3_3:+68226801 None:intergenic
GAATCAGATATTGCTTGCTT+CGG 0.458917 3_3:-68225425 Msa0467070:intron
AATGGTATATTATGGGTTTG+TGG 0.460874 3_3:-68226504 Msa0467070:CDS
TCTTCAACAGGAGGCGGTGG+AGG 0.472797 3_3:+68225699 None:intergenic
AATTGATTGTTGAGTTTGGT+TGG 0.481172 3_3:-68224723 Msa0467070:three_prime_UTR
GTTTCATTGATACCATTGCT+GGG 0.486547 3_3:-68224883 Msa0467070:CDS
CAACAGCAGTGTTGTGGAGG+AGG 0.487609 3_3:-68226797 Msa0467070:CDS
TTCTTTCCACACATCTTCCC+CGG 0.488058 3_3:+68225372 None:intergenic
TGGATTCACTCAGACTCAAC+AGG 0.489510 3_3:+68224802 None:intergenic
CTACTCTTTCTCCGAAATGA+TGG 0.494266 3_3:+68226865 None:intergenic
ATTGATTGTTGAGTTTGGTT+GGG 0.497495 3_3:-68224722 Msa0467070:three_prime_UTR
ATGAAGTTCTTGTTTCTGAA+TGG 0.508492 3_3:-68226522 Msa0467070:CDS
GCAGACAGGAAGGGCCATAC+AGG 0.516734 3_3:+68225774 None:intergenic
TAATTTACGCTAGTTTAGCC+GGG 0.521606 3_3:-68225390 Msa0467070:CDS
CATTGGCCGTATGTATCAGA+TGG 0.526906 3_3:+68224782 None:intergenic
TGAGAGTAAAGTAAAATCAA+TGG 0.530434 3_3:+68225087 None:intergenic
AGGAGTTTGTGCAATGGCAG+AGG 0.533565 3_3:+68224822 None:intergenic
TGTTACTTCCCACTGGAAGA+AGG 0.536692 3_3:-68226462 Msa0467070:intron
CTGCTTTATACATTCTCCTA+CGG 0.539301 3_3:-68224858 Msa0467070:CDS
AGCATGCTGTTACTTCCCAC+TGG 0.542911 3_3:-68226469 Msa0467070:CDS
GTTTCTTCAACAGGAGGCGG+TGG 0.547408 3_3:+68225696 None:intergenic
CGTAGGAGAATGTATAAAGC+AGG 0.556966 3_3:+68224859 None:intergenic
TTTCAACTTCAAATCGCACA+AGG 0.559541 3_3:+68227073 None:intergenic
TACCAACAACAGCAGTGTTG+TGG 0.561620 3_3:-68226803 Msa0467070:CDS
ACAATAACAGTAGTGGCCTC+GGG 0.564855 3_3:-68226958 Msa0467070:CDS
AGGTTGATAGTGAGGGCCGT+AGG 0.564890 3_3:+68224842 None:intergenic
TGTGTTTCTTCAACAGGAGG+CGG 0.566833 3_3:+68225693 None:intergenic
GTGAATCCATCTGATACATA+CGG 0.583903 3_3:-68224788 Msa0467070:exon
TAAAATCAATGGACATAACA+TGG 0.590376 3_3:+68225098 None:intergenic
TATAAAGCAGGCCCCAGCAA+TGG 0.590930 3_3:+68224871 None:intergenic
AGCAGTGTTGTGGAGGAGGA+AGG 0.592189 3_3:-68226793 Msa0467070:CDS
TCAACTTCAAATCGCACAAG+GGG 0.601051 3_3:+68227075 None:intergenic
GGGAAATACCTTCTTCCAGT+GGG 0.602141 3_3:+68226454 None:intergenic
AGTTGTGTTTCTTCAACAGG+AGG 0.602142 3_3:+68225690 None:intergenic
TTTCATTGATACCATTGCTG+GGG 0.604297 3_3:-68224882 Msa0467070:CDS
TATTACCGGTGTCTGGTTTG+GGG 0.608819 3_3:+68226696 None:intergenic
TTCAACTTCAAATCGCACAA+GGG 0.610767 3_3:+68227074 None:intergenic
GAAAGCAACAATAACAGTAG+TGG 0.613050 3_3:-68226965 Msa0467070:CDS
TCTCTCCCCAAACCAGACAC+CGG 0.613768 3_3:-68226701 Msa0467070:intron
GTTTAGCCGGGGAAGATGTG+TGG 0.614056 3_3:-68225378 Msa0467070:CDS
TCAATATACAGGTTTGACAA+AGG 0.614796 3_3:-68224922 Msa0467070:intron
AGGGAAATACCTTCTTCCAG+TGG 0.616603 3_3:+68226453 None:intergenic
TGTTATGGACTAGTGAAAAG+TGG 0.617560 3_3:+68224652 None:intergenic
ATCAGATATTGCTTGCTTCG+GGG 0.617901 3_3:-68225423 Msa0467070:intron
AACTTCAAATCGCACAAGGG+GGG 0.621546 3_3:+68227077 None:intergenic
CAACAACAGCAGTGTTGTGG+AGG 0.624485 3_3:-68226800 Msa0467070:CDS
AATGGCAGAGGTTGATAGTG+AGG 0.627029 3_3:+68224834 None:intergenic
ATGGCAGAGGTTGATAGTGA+GGG 0.631651 3_3:+68224835 None:intergenic
TGATGGTGTAGCAGCAACAG+AGG 0.642844 3_3:+68226882 None:intergenic
CTCAACAGGAGTTTGTGCAA+TGG 0.646011 3_3:+68224816 None:intergenic
GGAATCGAAAGTCACTGCAA+CGG 0.649464 3_3:-68225643 Msa0467070:intron
AACAGCATGCTATACACCAA+AGG 0.654498 3_3:+68226481 None:intergenic
AAGAAACACAACTTAAAACA+TGG 0.655934 3_3:-68225680 Msa0467070:CDS
GACATACTATAGTTATGCTG+TGG 0.656755 3_3:+68224676 None:intergenic
GATGGTGTAGCAGCAACAGA+GGG 0.657144 3_3:+68226883 None:intergenic
CAACTTCAAATCGCACAAGG+GGG 0.665215 3_3:+68227076 None:intergenic
TAATCTGCAACAACATCCCG+AGG 0.679788 3_3:+68226942 None:intergenic
AATTTACGCTAGTTTAGCCG+GGG 0.690077 3_3:-68225389 Msa0467070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATATAGTATGATA+GGG + chr3_3:68226772-68226791 None:intergenic 15.0%
!!! TATCTTTTATATAGTATGAT+AGG + chr3_3:68226773-68226792 None:intergenic 15.0%
!!! AATTTTACTCTTTCTCTTAT+GGG - chr3_3:68224978-68224997 Msa0467070:intron 20.0%
!! GATAAGATAGTATATATTAC+CGG + chr3_3:68225048-68225067 None:intergenic 20.0%
!!! AAAAAGCTTTTGAATTTGAA+AGG - chr3_3:68225162-68225181 Msa0467070:intron 20.0%
!! TAGTAAATTGAGTGAATAAT+AGG + chr3_3:68225321-68225340 None:intergenic 20.0%
!!! TTTTCATAAGTTATCCTAAA+AGG - chr3_3:68225432-68225451 Msa0467070:intron 20.0%
!! AATCATCAAAAATTTAAGCA+CGG - chr3_3:68225642-68225661 Msa0467070:intron 20.0%
!! TTCGATTCCAAAAAATTTAA+TGG + chr3_3:68226073-68226092 None:intergenic 20.0%
!! TAAATAATAGTATCCATGAT+TGG - chr3_3:68226164-68226183 Msa0467070:intron 20.0%
!!! TTAAAAATATTCAGGTTTTC+TGG + chr3_3:68226250-68226269 None:intergenic 20.0%
!! AGCTTAAAATAATGAATACA+AGG + chr3_3:68226453-68226472 None:intergenic 20.0%
!! AATTGTGTATTCATATTCAT+TGG + chr3_3:68226965-68226984 None:intergenic 20.0%
!! GATTAATTTTTGTGTTCACT+AGG - chr3_3:68224590-68224609 Msa0467070:three_prime_UTR 25.0%
! AGTTGAAAGAAGTTTGATTA+TGG - chr3_3:68224669-68224688 Msa0467070:three_prime_UTR 25.0%
! AAGTTACAAGTTACAAGATT+GGG + chr3_3:68224712-68224731 None:intergenic 25.0%
!!! ATTTTTTGTATTTCAGAGTG+GGG + chr3_3:68224735-68224754 None:intergenic 25.0%
!!! GATTTTTTGTATTTCAGAGT+GGG + chr3_3:68224736-68224755 None:intergenic 25.0%
!!! TGATTTTTTGTATTTCAGAG+TGG + chr3_3:68224737-68224756 None:intergenic 25.0%
!! CAATTTTACTCTTTCTCTTA+TGG - chr3_3:68224977-68224996 Msa0467070:intron 25.0%
!! TGTTTCTGAATGGTATATTA+TGG - chr3_3:68225215-68225234 Msa0467070:intron 25.0%
! GTTTCTGAATGGTATATTAT+GGG - chr3_3:68225216-68225235 Msa0467070:intron 25.0%
! AGTGAATCCTATATGAAAAA+GGG + chr3_3:68225296-68225315 None:intergenic 25.0%
! AAGTGAATCCTATATGAAAA+AGG + chr3_3:68225297-68225316 None:intergenic 25.0%
!!! AGTTATTTTTGTAGTGAAAG+AGG - chr3_3:68225393-68225412 Msa0467070:CDS 25.0%
!! CTAGTTATAATAAGCCTTTT+AGG + chr3_3:68225449-68225468 None:intergenic 25.0%
! ATATTATAGCTAGCTAAGTT+TGG + chr3_3:68225572-68225591 None:intergenic 25.0%
!! TAACATTCAACCATTGTTTT+AGG - chr3_3:68225690-68225709 Msa0467070:CDS 25.0%
!!! AACATTCAACCATTGTTTTA+GGG - chr3_3:68225691-68225710 Msa0467070:CDS 25.0%
! AATTATAATACTATCCTGAG+TGG + chr3_3:68225734-68225753 None:intergenic 25.0%
!!! TTATTAATTCTGAAATGCCA+GGG + chr3_3:68225793-68225812 None:intergenic 25.0%
! AAGAAACACAACTTAAAACA+TGG - chr3_3:68226047-68226066 Msa0467070:intron 25.0%
!!! AACATGGCCATTAAATTTTT+TGG - chr3_3:68226063-68226082 Msa0467070:intron 25.0%
! ATAATTCAATCAACAGTTAC+TGG - chr3_3:68226517-68226536 Msa0467070:CDS 25.0%
! TAAAATCAATGGACATAACA+TGG + chr3_3:68226632-68226651 None:intergenic 25.0%
! TGAGAGTAAAGTAAAATCAA+TGG + chr3_3:68226643-68226662 None:intergenic 25.0%
! ATATCATTGTAAACCCAAAA+TGG + chr3_3:68226675-68226694 None:intergenic 25.0%
! TTGAAATTGATTGTTGAGTT+TGG - chr3_3:68227000-68227019 Msa0467070:CDS 25.0%
! AATGGATGTCAATATTGTTA+TGG + chr3_3:68227093-68227112 None:intergenic 25.0%
!!! TCAACGTCTAACTTTTTTTT+TGG - chr3_3:68227179-68227198 Msa0467070:five_prime_UTR 25.0%
GAAGTTACAAGTTACAAGAT+TGG + chr3_3:68224713-68224732 None:intergenic 30.0%
! GCTTTCATTTTCATTACTAG+AGG + chr3_3:68224823-68224842 None:intergenic 30.0%
TTGAATTTGAAAGGAGATGA+TGG - chr3_3:68225171-68225190 Msa0467070:intron 30.0%
!! ATGAAGTTCTTGTTTCTGAA+TGG - chr3_3:68225205-68225224 Msa0467070:intron 30.0%
AATGGTATATTATGGGTTTG+TGG - chr3_3:68225223-68225242 Msa0467070:intron 30.0%
!! GGTATTTCCCTTTTTCATAT+AGG - chr3_3:68225286-68225305 Msa0467070:intron 30.0%
AATGGTTGAATGTTACATCT+TGG + chr3_3:68225685-68225704 None:intergenic 30.0%
AAAACTCTACAGAATGTAAG+AGG + chr3_3:68225762-68225781 None:intergenic 30.0%
!!! TAGAGTTTTAACTTATACCC+TGG - chr3_3:68225773-68225792 Msa0467070:CDS 30.0%
!! GTTATTAATTCTGAAATGCC+AGG + chr3_3:68225794-68225813 None:intergenic 30.0%
ACATCATTGTTTACATAGCA+GGG + chr3_3:68225861-68225880 None:intergenic 30.0%
AACATCATTGTTTACATAGC+AGG + chr3_3:68225862-68225881 None:intergenic 30.0%
!!! TGACGATTTAGTTTTTGCAT+TGG - chr3_3:68225895-68225914 Msa0467070:intron 30.0%
!!! TTCTTCCTTATTTTGTGCTA+TGG - chr3_3:68226002-68226021 Msa0467070:intron 30.0%
! TTAAGTTGTGTTTCTTCAAC+AGG + chr3_3:68226043-68226062 None:intergenic 30.0%
CAACTTTACAATGTTAGGTT+GGG + chr3_3:68226122-68226141 None:intergenic 30.0%
ACAACTTTACAATGTTAGGT+TGG + chr3_3:68226123-68226142 None:intergenic 30.0%
TGCAACAACTTTACAATGTT+AGG + chr3_3:68226127-68226146 None:intergenic 30.0%
ATGAACAAAATCACCAATCA+TGG + chr3_3:68226180-68226199 None:intergenic 30.0%
TACAACAGGAGGTTATTATT+AGG + chr3_3:68226210-68226229 None:intergenic 30.0%
ACGACGAGTTAAAAATATTC+AGG + chr3_3:68226258-68226277 None:intergenic 30.0%
! ATAATTTACGCTAGTTTAGC+CGG - chr3_3:68226336-68226355 Msa0467070:intron 30.0%
! AAGAATTTTTCCAGTACTTC+AGG - chr3_3:68226373-68226392 Msa0467070:intron 30.0%
! AGAATTTTTCCAGTACTTCA+GGG - chr3_3:68226374-68226393 Msa0467070:intron 30.0%
! AACTCAGCTTTTCATATTGT+TGG - chr3_3:68226417-68226436 Msa0467070:intron 30.0%
CTTCTCTAATATTGTTACGA+TGG - chr3_3:68226488-68226507 Msa0467070:CDS 30.0%
ACAACCTAGTTAGTTACATT+AGG - chr3_3:68226562-68226581 Msa0467070:CDS 30.0%
!! ATTTTAGCAAGTTGCAGATT+TGG + chr3_3:68226588-68226607 None:intergenic 30.0%
! TTTTACTTTACTCTCAACAC+TGG - chr3_3:68226647-68226666 Msa0467070:intron 30.0%
ATGATATGACTGCTAGAAAA+TGG - chr3_3:68226688-68226707 Msa0467070:intron 30.0%
TATATAGTATGATAGGGACT+AGG + chr3_3:68226766-68226785 None:intergenic 30.0%
TCAATATACAGGTTTGACAA+AGG - chr3_3:68226805-68226824 Msa0467070:CDS 30.0%
AATTGATTGTTGAGTTTGGT+TGG - chr3_3:68227004-68227023 Msa0467070:CDS 30.0%
ATTGATTGTTGAGTTTGGTT+GGG - chr3_3:68227005-68227024 Msa0467070:CDS 30.0%
TCTGCAAAGATATGTCTAAA+TGG + chr3_3:68227111-68227130 None:intergenic 30.0%
TTCAACTTCAAATCGCACAA+GGG + chr3_3:68224656-68224675 None:intergenic 35.0%
TTTCAACTTCAAATCGCACA+AGG + chr3_3:68224657-68224676 None:intergenic 35.0%
GAAAGCAACAATAACAGTAG+TGG - chr3_3:68224762-68224781 Msa0467070:three_prime_UTR 35.0%
TAGTATATATTACCGGTGTC+TGG + chr3_3:68225041-68225060 None:intergenic 35.0%
CAACAACTCTGTTACAAAGA+TGG + chr3_3:68225353-68225372 None:intergenic 35.0%
TTGAACTGACCCTAAAACAA+TGG + chr3_3:68225703-68225722 None:intergenic 35.0%
AAAAATGAAGCAGACAGGAA+GGG + chr3_3:68225965-68225984 None:intergenic 35.0%
!! TTCCTGTCTGCTTCATTTTT+CGG - chr3_3:68225965-68225984 Msa0467070:intron 35.0%
GGTTTCCATAGCACAAAATA+AGG + chr3_3:68226010-68226029 None:intergenic 35.0%
AGTAAGAATGTGACTACAAC+AGG + chr3_3:68226224-68226243 None:intergenic 35.0%
GAATCAGATATTGCTTGCTT+CGG - chr3_3:68226302-68226321 Msa0467070:intron 35.0%
AATCAGATATTGCTTGCTTC+GGG - chr3_3:68226303-68226322 Msa0467070:intron 35.0%
! TAATTTACGCTAGTTTAGCC+GGG - chr3_3:68226337-68226356 Msa0467070:intron 35.0%
TTGGCCTAATGTAACTAACT+AGG + chr3_3:68226569-68226588 None:intergenic 35.0%
!! ATCTGCAACTTGCTAAAATC+TGG - chr3_3:68226589-68226608 Msa0467070:CDS 35.0%
GTAATGCTCGTTCAATATAC+AGG - chr3_3:68226794-68226813 Msa0467070:CDS 35.0%
AGCAATGGTATCAATGAAAC+TGG + chr3_3:68226844-68226863 None:intergenic 35.0%
AGTTTCATTGATACCATTGC+TGG - chr3_3:68226843-68226862 Msa0467070:CDS 35.0%
GTTTCATTGATACCATTGCT+GGG - chr3_3:68226844-68226863 Msa0467070:CDS 35.0%
TTTCATTGATACCATTGCTG+GGG - chr3_3:68226845-68226864 Msa0467070:CDS 35.0%
CTGCTTTATACATTCTCCTA+CGG - chr3_3:68226869-68226888 Msa0467070:CDS 35.0%
GTGAATCCATCTGATACATA+CGG - chr3_3:68226939-68226958 Msa0467070:CDS 35.0%
GACATACTATAGTTATGCTG+TGG + chr3_3:68227054-68227073 None:intergenic 35.0%
!! TGTTATGGACTAGTGAAAAG+TGG + chr3_3:68227078-68227097 None:intergenic 35.0%
! AAGGGGGGTGTAAATTACAA+TGG + chr3_3:68224638-68224657 None:intergenic 40.0%
TCAACTTCAAATCGCACAAG+GGG + chr3_3:68224655-68224674 None:intergenic 40.0%
AACAATAACAGTAGTGGCCT+CGG - chr3_3:68224768-68224787 Msa0467070:three_prime_UTR 40.0%
TTGCTGCTACACCATCATTT+CGG - chr3_3:68224851-68224870 Msa0467070:CDS 40.0%
CTACTCTTTCTCCGAAATGA+TGG + chr3_3:68224865-68224884 None:intergenic 40.0%
GGTAACTTGACTCTCTTTGT+TGG + chr3_3:68224908-68224927 None:intergenic 40.0%
AGGAGGAAGGAAAAAGAGAT+TGG - chr3_3:68224947-68224966 Msa0467070:intron 40.0%
! ATATTACCGGTGTCTGGTTT+GGG + chr3_3:68225035-68225054 None:intergenic 40.0%
TATATTACCGGTGTCTGGTT+TGG + chr3_3:68225036-68225055 None:intergenic 40.0%
AATGATTCTGTCTGTAGTCG+AGG - chr3_3:68225124-68225143 Msa0467070:intron 40.0%
ATGATTCTGTCTGTAGTCGA+GGG - chr3_3:68225125-68225144 Msa0467070:intron 40.0%
TATTATGGGTTTGTGGCCTT+TGG - chr3_3:68225230-68225249 Msa0467070:intron 40.0%
AACAGCATGCTATACACCAA+AGG + chr3_3:68225249-68225268 None:intergenic 40.0%
ACCAATGTGATCGAAACGAA+GGG + chr3_3:68225621-68225640 None:intergenic 40.0%
TACCAATGTGATCGAAACGA+AGG + chr3_3:68225622-68225641 None:intergenic 40.0%
GTTCAATAGAGTTTCCACTC+AGG - chr3_3:68225717-68225736 Msa0467070:CDS 40.0%
! TTGCCTACTTTGAGCTTTGT+GGG - chr3_3:68225816-68225835 Msa0467070:intron 40.0%
ATTCCCACAAAGCTCAAAGT+AGG + chr3_3:68225822-68225841 None:intergenic 40.0%
CATTGTTTACATAGCAGGGT+CGG + chr3_3:68225857-68225876 None:intergenic 40.0%
CAAAAAGCAGTGTTCCTGTA+TGG - chr3_3:68225939-68225958 Msa0467070:intron 40.0%
GAAAAATGAAGCAGACAGGA+AGG + chr3_3:68225966-68225985 None:intergenic 40.0%
AGTTGTGTTTCTTCAACAGG+AGG + chr3_3:68226040-68226059 None:intergenic 40.0%
AAGAATGTGACTACAACAGG+AGG + chr3_3:68226221-68226240 None:intergenic 40.0%
ATCAGATATTGCTTGCTTCG+GGG - chr3_3:68226304-68226323 Msa0467070:intron 40.0%
! AATTTACGCTAGTTTAGCCG+GGG - chr3_3:68226338-68226357 Msa0467070:intron 40.0%
ATTTGCTTTCCCTGAAGTAC+TGG + chr3_3:68226386-68226405 None:intergenic 40.0%
! AGCTTTTCATATTGTTGGCC+TGG - chr3_3:68226422-68226441 Msa0467070:intron 40.0%
TCAATCAACAGTTACTGGAC+TGG - chr3_3:68226522-68226541 Msa0467070:CDS 40.0%
TAACTAGGTTGTAGCAGACT+AGG + chr3_3:68226554-68226573 None:intergenic 40.0%
ACAGGTTTGACAAAGGTTCT+TGG - chr3_3:68226812-68226831 Msa0467070:CDS 40.0%
CGTAGGAGAATGTATAAAGC+AGG + chr3_3:68226871-68226890 None:intergenic 40.0%
AGACGTTGAACTTCTCTTCA+AGG + chr3_3:68227168-68227187 None:intergenic 40.0%
AACTTCAAATCGCACAAGGG+GGG + chr3_3:68224653-68224672 None:intergenic 45.0%
CAACTTCAAATCGCACAAGG+GGG + chr3_3:68224654-68224673 None:intergenic 45.0%
ACAATAACAGTAGTGGCCTC+GGG - chr3_3:68224769-68224788 Msa0467070:three_prime_UTR 45.0%
TAATCTGCAACAACATCCCG+AGG + chr3_3:68224788-68224807 None:intergenic 45.0%
TACCAACAACAGCAGTGTTG+TGG - chr3_3:68224924-68224943 Msa0467070:intron 45.0%
! TATTACCGGTGTCTGGTTTG+GGG + chr3_3:68225034-68225053 None:intergenic 45.0%
! TGTTACTTCCCACTGGAAGA+AGG - chr3_3:68225265-68225284 Msa0467070:intron 45.0%
GGGAAATACCTTCTTCCAGT+GGG + chr3_3:68225276-68225295 None:intergenic 45.0%
AGGGAAATACCTTCTTCCAG+TGG + chr3_3:68225277-68225296 None:intergenic 45.0%
AATGTGATCGAAACGAAGGG+TGG + chr3_3:68225618-68225637 None:intergenic 45.0%
ACCCTTCGTTTCGATCACAT+TGG - chr3_3:68225617-68225636 Msa0467070:intron 45.0%
CTTGCCTACTTTGAGCTTTG+TGG - chr3_3:68225815-68225834 Msa0467070:intron 45.0%
!!! GAACACTGCTTTTTGAGCTG+TGG + chr3_3:68225934-68225953 None:intergenic 45.0%
CACCGAAAAATGAAGCAGAC+AGG + chr3_3:68225970-68225989 None:intergenic 45.0%
!! CTGTCTGCTTCATTTTTCGG+TGG - chr3_3:68225968-68225987 Msa0467070:intron 45.0%
TGTGTTTCTTCAACAGGAGG+CGG + chr3_3:68226037-68226056 None:intergenic 45.0%
GGAATCGAAAGTCACTGCAA+CGG - chr3_3:68226084-68226103 Msa0467070:intron 45.0%
ATATTGCTTGCTTCGGGGAT+AGG - chr3_3:68226309-68226328 Msa0467070:intron 45.0%
TTCTTTCCACACATCTTCCC+CGG + chr3_3:68226358-68226377 None:intergenic 45.0%
AATGAATACAAGGACGAGCC+AGG + chr3_3:68226443-68226462 None:intergenic 45.0%
! TCTCAACACTGGCACCATTT+TGG - chr3_3:68226658-68226677 Msa0467070:intron 45.0%
! CTCAACACTGGCACCATTTT+GGG - chr3_3:68226659-68226678 Msa0467070:intron 45.0%
!! ATGGCAGAGGTTGATAGTGA+GGG + chr3_3:68226895-68226914 None:intergenic 45.0%
!! AATGGCAGAGGTTGATAGTG+AGG + chr3_3:68226896-68226915 None:intergenic 45.0%
CTCAACAGGAGTTTGTGCAA+TGG + chr3_3:68226914-68226933 None:intergenic 45.0%
TGGATTCACTCAGACTCAAC+AGG + chr3_3:68226928-68226947 None:intergenic 45.0%
CATTGGCCGTATGTATCAGA+TGG + chr3_3:68226948-68226967 None:intergenic 45.0%
GATGGTGTAGCAGCAACAGA+GGG + chr3_3:68224847-68224866 None:intergenic 50.0%
! TGATGGTGTAGCAGCAACAG+AGG + chr3_3:68224848-68224867 None:intergenic 50.0%
CTCCACAACACTGCTGTTGT+TGG + chr3_3:68224929-68224948 None:intergenic 50.0%
CAACAACAGCAGTGTTGTGG+AGG - chr3_3:68224927-68224946 Msa0467070:intron 50.0%
! AGCATGCTGTTACTTCCCAC+TGG - chr3_3:68225258-68225277 Msa0467070:intron 50.0%
TATAAAGCAGGCCCCAGCAA+TGG + chr3_3:68226859-68226878 None:intergenic 50.0%
AGGAGTTTGTGCAATGGCAG+AGG + chr3_3:68226908-68226927 None:intergenic 50.0%
CAACAGCAGTGTTGTGGAGG+AGG - chr3_3:68224930-68224949 Msa0467070:intron 55.0%
AGCAGTGTTGTGGAGGAGGA+AGG - chr3_3:68224934-68224953 Msa0467070:intron 55.0%
TCTCTCCCCAAACCAGACAC+CGG - chr3_3:68225026-68225045 Msa0467070:intron 55.0%
ACGAAGGGTGGCATCATGCA+TGG + chr3_3:68225606-68225625 None:intergenic 55.0%
GTTTCTTCAACAGGAGGCGG+TGG + chr3_3:68226034-68226053 None:intergenic 55.0%
GTTTAGCCGGGGAAGATGTG+TGG - chr3_3:68226349-68226368 Msa0467070:intron 55.0%
!! AGGTTGATAGTGAGGGCCGT+AGG + chr3_3:68226888-68226907 None:intergenic 55.0%
GCAGACAGGAAGGGCCATAC+AGG + chr3_3:68225956-68225975 None:intergenic 60.0%
TCTTCAACAGGAGGCGGTGG+AGG + chr3_3:68226031-68226050 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68224544 68227205 68224544 ID=Msa0467070;Name=Msa0467070
chr3_3 mRNA 68224544 68227205 68224544 ID=Msa0467070-mRNA-1;Parent=Msa0467070;Name=Msa0467070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=144|1|1|1|1|1|6|263|327
chr3_3 exon 68224544 68224933 68224544 ID=Msa0467070-mRNA-1:exon:15778;Parent=Msa0467070-mRNA-1
chr3_3 exon 68225040 68225122 68225040 ID=Msa0467070-mRNA-1:exon:15777;Parent=Msa0467070-mRNA-1
chr3_3 exon 68225342 68225440 68225342 ID=Msa0467070-mRNA-1:exon:15776;Parent=Msa0467070-mRNA-1
chr3_3 exon 68225644 68225812 68225644 ID=Msa0467070-mRNA-1:exon:15775;Parent=Msa0467070-mRNA-1
chr3_3 exon 68226463 68226608 68226463 ID=Msa0467070-mRNA-1:exon:15774;Parent=Msa0467070-mRNA-1
chr3_3 exon 68226702 68227205 68226702 ID=Msa0467070-mRNA-1:exon:15773;Parent=Msa0467070-mRNA-1
chr3_3 five_prime_UTR 68227062 68227205 68227062 ID=Msa0467070-mRNA-1:five_prime_utr;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68226702 68227061 68226702 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68226463 68226608 68226463 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68225644 68225812 68225644 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68225342 68225440 68225342 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68225040 68225122 68225040 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 CDS 68224807 68224933 68224807 ID=Msa0467070-mRNA-1:cds;Parent=Msa0467070-mRNA-1
chr3_3 three_prime_UTR 68224544 68224806 68224544 ID=Msa0467070-mRNA-1:three_prime_utr;Parent=Msa0467070-mRNA-1
Gene Sequence

>Msa0467070

ATGGTGCTAGTTGTAGCTAAACCCAATCTTGTAACTTGTAACTTCCCCACTCTGAAATACAAAAAATCAATTCAGAAAGCAACAATAACAGTAGTGGCCTCGGGATGTTGTTGCAGATTAAGCTCATTCACACCTCTAGTAATGAAAATGAAAGCTCCCTCTGTTGCTGCTACACCATCATTTCGGAGAAAGAGTAGTATTGTTGTTTGCAATGATTCCAACAAAGAGAGTCAAGTTACCAACAACAGCAGTGTTGTGGAGGAGGAAGGAAAAAGAGATTGGACAACTTCAATTTTACTCTTTCTCTTATGGGCTGCACTTATCTACTATGTTTCTTTTCTCTCCCCAAACCAGACACCGTCGAGGGACATGTATTTCTTGAAAAAGCTTTTGAATTTGAAAGGAGATGATGGTTTCAGAATGAATGAAGTTCTTGTTTCTGAATGGTATATTATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGTTACTTCCCACTGGAAGAAGCTCAAAAAGCAGTGTTCCTGTATGGCCCTTCCTGTCTGCTTCATTTTTCGGTGGCATATATGCGCTTCTTCCTTATTTTGTGCTATGGAAACCTCCACCGCCTCCTGTTGAAGAAACACAACTTAAAACATGGCCATTAAATTTTTTGGAATCGAAAGTCACTGCAACGATATTGCTTGCTTCGGGGATAGGCATCATAATTTACGCTAGTTTAGCCGGGGAAGATGTGTGGAAAGAATTTTTCCAGTACTTCAGGGAAAGCAAATTTATCCATGTTATGTCCATTGATTTTACTTTACTCTCAACACTGGCACCATTTTGGGTTTACAATGATATGACTGCTAGAAAATGGTTTGACAAAGGTTCTTGGCTTCTTCCAGTTTCATTGATACCATTGCTGGGGCCTGCTTTATACATTCTCCTACGGCCCTCACTATCAACCTCTGCCATTGCACAAACTCCTGTTGAGTCTGAGTGA

Protein sequence

>Msa0467070

MVLVVAKPNLVTCNFPTLKYKKSIQKATITVVASGCCCRLSSFTPLVMKMKAPSVAATPSFRRKSSIVVCNDSNKESQVTNNSSVVEEEGKRDWTTSILLFLLWAALIYYVSFLSPNQTPSRDMYFLKKLLNLKGDDGFRMNEVLVSEWYIMGLWPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALLPYFVLWKPPPPPVEETQLKTWPLNFLESKVTATILLASGIGIIIYASLAGEDVWKEFFQYFRESKFIHVMSIDFTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLSTSAIAQTPVESE*