AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444770 MtrunA17_Chr4g0041041 97.959 147 3 0 1 147 17 163 3.60e-103 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 138 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGCCATCCCATTAATTT+AGG 0.098155 tig0030819:+37370 Msa1444760:intron
GGAAATGACAAAAGAGATTT+TGG 0.179922 tig0030819:-39002 Msa1444770:CDS
TAATTTACACTTACTCAATT+AGG 0.187858 tig0030819:-37663 Msa1444770:three_prime_UTR
CACGACATTGGTAATTATTT+AGG 0.199459 tig0030819:-37259 Msa1444770:three_prime_UTR
TACTTTCAACCCTAAATTAA+TGG 0.206893 tig0030819:-37380 Msa1444770:three_prime_UTR
TTTGGAGTCAGAAGTTTATA+AGG 0.209201 tig0030819:-38984 Msa1444770:CDS
AGGAATTACTAAAGTTAAAA+AGG 0.212557 tig0030819:-37740 Msa1444770:three_prime_UTR
TACAAAGAGAAGTCATAATT+TGG 0.219025 tig0030819:-38347 Msa1444770:three_prime_UTR
TGGAATTAAGAAAGTTAAAA+AGG 0.229369 tig0030819:-37760 Msa1444770:three_prime_UTR
ATCTCTTTCTGTTGGTTGTA+TGG 0.255835 tig0030819:+38302 Msa1444780:CDS
GTGCTAGACAAGTTCTTATA+AGG 0.269712 tig0030819:-39155 Msa1444770:intron
TCTTTGGTATTGTATGAATA+AGG 0.269837 tig0030819:-38483 Msa1444770:three_prime_UTR
TTCTCCTTGTTTCAGAAAAT+AGG 0.301433 tig0030819:-38047 Msa1444770:three_prime_UTR
ACCATAGATATGTTCCTCTT+TGG 0.312491 tig0030819:-38690 Msa1444770:three_prime_UTR
GGATGGCCGCTATCAATTCT+TGG 0.312850 tig0030819:-38638 Msa1444770:three_prime_UTR
CGTGGCTCCGCCACTGTCTT+TGG 0.315076 tig0030819:-37330 Msa1444770:three_prime_UTR
AAATCAAATATATCTCTCTT+TGG 0.336694 tig0030819:-38499 Msa1444770:three_prime_UTR
GGCGGAGCCACGTGTGGACT+GGG 0.339189 tig0030819:+37341 Msa1444760:intron
TGAGAAGCAAAACAAGTTAC+TGG 0.341322 tig0030819:-38420 Msa1444770:three_prime_UTR
AATTATGACTTCTCTTTGTA+AGG 0.341560 tig0030819:+38350 Msa1444780:CDS
ATGGCCATCCCATTAATTTA+GGG 0.343992 tig0030819:+37371 Msa1444760:intron
AATTTACACTTACTCAATTA+GGG 0.344272 tig0030819:-37662 Msa1444770:three_prime_UTR
AAAGGTCGTGGCGTGATTGC+GGG 0.346021 tig0030819:-37579 Msa1444770:three_prime_UTR
GGAGTCTCTCCAGTCCATTT+TGG 0.347401 tig0030819:+39240 None:intergenic
TGGCGGAGCCACGTGTGGAC+TGG 0.352376 tig0030819:+37340 Msa1444760:intron
CCTTCATCATATGCATGAAA+TGG 0.356221 tig0030819:+38814 None:intergenic
AAAGCAAAAGGAATCGGTTT+GGG 0.365895 tig0030819:-37843 Msa1444770:three_prime_UTR
GAACACGGTCGCGGTGTGAC+TGG 0.370911 tig0030819:-37523 Msa1444770:three_prime_UTR
ACTTTCAACCCTAAATTAAT+GGG 0.372265 tig0030819:-37379 Msa1444770:three_prime_UTR
TCAGCCTTCAGAAAAGAAAA+TGG 0.381420 tig0030819:-37442 Msa1444770:three_prime_UTR
GAAACAGGTTGGGGATTGAT+TGG 0.383913 tig0030819:+38003 None:intergenic
GCACCGACACTTTAGATTGA+TGG 0.394611 tig0030819:+37164 Msa1444760:intron
ATTAAAATAAATGTTGATGC+AGG 0.396007 tig0030819:+37967 None:intergenic
TTTCTGTTGGTTGTATGGTA+TGG 0.402923 tig0030819:+38307 Msa1444780:CDS
GAAAGCTGGTAAGACCAAAA+TGG 0.406231 tig0030819:-39254 Msa1444770:CDS
CTCAATTAGGGTTTGTGAGA+TGG 0.412218 tig0030819:-37650 Msa1444770:three_prime_UTR
TTTCTCAAATGAAACAGGTT+GGG 0.417107 tig0030819:+37993 None:intergenic
CTTCATAGCTACTAGCTTGA+AGG 0.422456 tig0030819:+39280 None:intergenic
ACCAAAGAGGAACATATCTA+TGG 0.424022 tig0030819:+38689 None:intergenic
AGAGAAGTCATAATTTGGTT+AGG 0.424623 tig0030819:-38342 Msa1444770:three_prime_UTR
GGGTGTTTCTCAAATGAAAC+AGG 0.426214 tig0030819:+37988 None:intergenic
GTCAGAAGTTTATAAGGAGT+TGG 0.427742 tig0030819:-38978 Msa1444770:CDS
CAAAGCAAAAGGAATCGGTT+TGG 0.431298 tig0030819:-37844 Msa1444770:three_prime_UTR
CGTGACCCCTTCTTCTCCTC+TGG 0.435168 tig0030819:+37467 Msa1444760:CDS
GCCTGCTTATCTCTTTCTGT+TGG 0.446671 tig0030819:+38294 Msa1444780:CDS
TAGTGGTGGTGATGCCATGC+GGG 0.449233 tig0030819:+39367 None:intergenic
CCATTTCATGCATATGATGA+AGG 0.452780 tig0030819:-38814 Msa1444770:CDS
AAAATCAAAGCAAAAGGAAT+CGG 0.457629 tig0030819:-37849 Msa1444770:three_prime_UTR
TGTTGGTGCCTTTGTGGTAG+TGG 0.466508 tig0030819:+39350 None:intergenic
AACACGGTCGCGGTGTGACT+GGG 0.468896 tig0030819:-37522 Msa1444770:three_prime_UTR
TTCAGAGATCGCACTGAAAG+TGG 0.478596 tig0030819:-37609 Msa1444770:three_prime_UTR
TTCTCAAATGAAACAGGTTG+GGG 0.484153 tig0030819:+37994 None:intergenic
ATAATTACCAATGTCGTGTC+CGG 0.490785 tig0030819:+37264 Msa1444760:intron
TGAATCACCAGAGGAGAAGA+AGG 0.499458 tig0030819:-37474 Msa1444770:three_prime_UTR
TAATGATGAATGAATCAGAT+TGG 0.500268 tig0030819:-37780 Msa1444770:three_prime_UTR
GTGTGGACTGGGGTTGGCCA+TGG 0.503733 tig0030819:+37352 Msa1444760:intron
GTTTCTCAAATGAAACAGGT+TGG 0.504699 tig0030819:+37992 None:intergenic
ACGCCGTGTTGGTGCCTTTG+TGG 0.510870 tig0030819:+39344 None:intergenic
CAGAAAGAGATAAGCAGGCC+AGG 0.511374 tig0030819:-38290 Msa1444770:three_prime_UTR
CATTCCAAAATCAAAGCAAA+AGG 0.511770 tig0030819:-37855 Msa1444770:three_prime_UTR
TGGTAACTCATTATCAAGAA+AGG 0.512155 tig0030819:+38709 None:intergenic
TTATACTCTATCCTCAAGCT+TGG 0.513522 tig0030819:-39177 Msa1444770:CDS
GAAAGGTCGTGGCGTGATTG+CGG 0.515423 tig0030819:-37580 Msa1444770:three_prime_UTR
TAGCTATGAAGAAGGAAAGC+TGG 0.521816 tig0030819:-39268 Msa1444770:CDS
ACCAACAGAAAGAGATAAGC+AGG 0.522479 tig0030819:-38295 Msa1444770:three_prime_UTR
TGATTGGTAGAGACAATTGT+GGG 0.525726 tig0030819:+38019 None:intergenic
CCCATGGTTTCTGCTACTAA+AGG 0.526631 tig0030819:-38087 Msa1444770:three_prime_UTR
GACTGGGGATAGGTGATGGA+TGG 0.527732 tig0030819:-37506 Msa1444770:three_prime_UTR
CAATGTTGTTGCTCATAGCC+TGG 0.530933 tig0030819:+38272 Msa1444780:CDS
TGAAGGGAATCTTACATGGC+TGG 0.540223 tig0030819:-38797 Msa1444770:CDS
AGCCACGTGTGGACTGGGGT+TGG 0.545543 tig0030819:+37346 Msa1444760:intron
TTCATAGCTACTAGCTTGAA+GGG 0.550261 tig0030819:+39281 None:intergenic
AGCTTGAGGATAGAGTATAA+AGG 0.550336 tig0030819:+39180 None:intergenic
TTAAAATAAATGTTGATGCA+GGG 0.550733 tig0030819:+37968 None:intergenic
TAAAGATGAAATTACAATCA+GGG 0.551499 tig0030819:+38927 None:intergenic
CTGGTAAGACCAAAATGGAC+TGG 0.551537 tig0030819:-39249 Msa1444770:CDS
GACAGTGGCGGAGCCACGTG+TGG 0.554617 tig0030819:+37335 Msa1444760:intron
GCTCGAACCATGCGAGAGAG+AGG 0.558206 tig0030819:+39219 None:intergenic
GTGTGACTGGGGATAGGTGA+TGG 0.560331 tig0030819:-37510 Msa1444770:three_prime_UTR
TTGAAGGGAGGTTGTTGTGT+CGG 0.560578 tig0030819:+39296 None:intergenic
AATCAGGGTATACTAAAGAC+TGG 0.564057 tig0030819:+38942 None:intergenic
TTGATTGGTAGAGACAATTG+TGG 0.564988 tig0030819:+38018 None:intergenic
ATATGTTCCTCTTTGGTCAG+TGG 0.566687 tig0030819:-38683 Msa1444770:three_prime_UTR
GTAGAATCTCATTGTCGAGA+TGG 0.571064 tig0030819:+38119 None:intergenic
CAAGCTAGTAGCTATGAAGA+AGG 0.571992 tig0030819:-39276 Msa1444770:CDS
ACAAACACCGGACACGACAT+TGG 0.574835 tig0030819:-37271 Msa1444770:three_prime_UTR
CATTTCATGCATATGATGAA+GGG 0.577373 tig0030819:-38813 Msa1444770:CDS
GTCGCGGTGTGACTGGGGAT+AGG 0.578240 tig0030819:-37516 Msa1444770:three_prime_UTR
ATTGCGGGCTTCAATTTCGA+CGG 0.581217 tig0030819:-37564 Msa1444770:three_prime_UTR
AGAGACTCCTCTCTCTCGCA+TGG 0.582497 tig0030819:-39226 Msa1444770:CDS
TCCTTTAGTAGCAGAAACCA+TGG 0.588427 tig0030819:+38086 None:intergenic
CTAAATTAATGGGATGGCCA+TGG 0.589189 tig0030819:-37369 Msa1444770:three_prime_UTR
TCAACCCTAAATTAATGGGA+TGG 0.589233 tig0030819:-37375 Msa1444770:three_prime_UTR
ATTCTACCATCGCAGACCCA+TGG 0.590296 tig0030819:-38103 Msa1444770:three_prime_UTR
ATGATGAAGGGAATCTTACA+TGG 0.591019 tig0030819:-38801 Msa1444770:CDS
GATGGCGACGAACACGGTCG+CGG 0.591631 tig0030819:-37532 Msa1444770:three_prime_UTR
TGTTCCTCTTTGGTCAGTGG+CGG 0.595445 tig0030819:-38680 Msa1444770:three_prime_UTR
TGGGGATAGGTGATGGATGG+AGG 0.596822 tig0030819:-37503 Msa1444770:three_prime_UTR
GAATCACCAGAGGAGAAGAA+GGG 0.601012 tig0030819:-37473 Msa1444770:three_prime_UTR
TTTCGACGGAGAGGTAGAGA+TGG 0.602939 tig0030819:-37550 Msa1444770:three_prime_UTR
ACCACCACGTGACGCCGTGT+TGG 0.604335 tig0030819:+39333 None:intergenic
GGCCAACCCCAGTCCACACG+TGG 0.606126 tig0030819:-37348 Msa1444770:three_prime_UTR
GGTAGAGATGGCGACGAACA+CGG 0.608414 tig0030819:-37538 Msa1444770:three_prime_UTR
TGGATGCTGAGACAGTAGTA+AGG 0.608945 tig0030819:+38139 Msa1444780:CDS
TCAGAGATCGCACTGAAAGT+GGG 0.610938 tig0030819:-37608 Msa1444770:three_prime_UTR
TGGTGCCTTTGTGGTAGTGG+TGG 0.612166 tig0030819:+39353 None:intergenic
CAGAAACCATGGGTCTGCGA+TGG 0.612392 tig0030819:+38097 None:intergenic
AGTGGGTAACTGAAAGGTCG+TGG 0.613019 tig0030819:-37591 Msa1444770:three_prime_UTR
ACTGAAAGTGGGTAACTGAA+AGG 0.616082 tig0030819:-37597 Msa1444770:three_prime_UTR
ACACGGTCGCGGTGTGACTG+GGG 0.620854 tig0030819:-37521 Msa1444770:three_prime_UTR
AGTGGTGGTGATGCCATGCG+GGG 0.626878 tig0030819:+39368 None:intergenic
CCACATGTGTCGGTGTCGTG+TGG 0.628120 tig0030819:-37209 Msa1444770:three_prime_UTR
GCGGAGCCACGTGTGGACTG+GGG 0.628801 tig0030819:+37342 Msa1444760:intron
GGCACCAACACGGCGTCACG+TGG 0.633755 tig0030819:-39337 Msa1444770:CDS
TCACGTGGTGGTTCACGCTG+CGG 0.638308 tig0030819:-39322 Msa1444770:CDS
GCGGGGAGATTAATGATGAG+AGG 0.645229 tig0030819:+39385 None:intergenic
CTTGTCTAGCACCAAGCTTG+AGG 0.645836 tig0030819:+39166 None:intergenic
CCTTTAGTAGCAGAAACCAT+GGG 0.648557 tig0030819:+38087 None:intergenic
GTAGTGGTGGTGATGCCATG+CGG 0.652417 tig0030819:+39366 None:intergenic
ACACCATCAATCTAAAGTGT+CGG 0.655186 tig0030819:-37167 Msa1444770:three_prime_UTR
TCATCATTAATCTCCCCGCA+TGG 0.655400 tig0030819:-39381 Msa1444770:CDS
ACCAACACGGCGTCACGTGG+TGG 0.659578 tig0030819:-39334 Msa1444770:CDS
CCACACGACACCGACACATG+TGG 0.661828 tig0030819:+37209 Msa1444760:intron
GGCTCCGCCACTGACCAAAG+AGG 0.667590 tig0030819:+38676 None:intergenic
GGGCTTCAATTTCGACGGAG+AGG 0.667983 tig0030819:-37559 Msa1444770:three_prime_UTR
AATCACCAGAGGAGAAGAAG+GGG 0.668907 tig0030819:-37472 Msa1444770:three_prime_UTR
TGTTATTTAACCACATGTGT+CGG 0.671772 tig0030819:-37219 Msa1444770:three_prime_UTR
AAATGTGTTGGGAAGAACAA+CGG 0.672122 tig0030819:+37134 Msa1444760:intron
CATCACCACCACTACCACAA+AGG 0.675272 tig0030819:-39358 Msa1444770:CDS
GTGTGGACACTGACACATGT+TGG 0.676828 tig0030819:-37192 Msa1444770:three_prime_UTR
TGAAGCATTGACACAAACAC+CGG 0.681063 tig0030819:-37283 Msa1444770:three_prime_UTR
GTTGGTTGTATGGTATGGAA+AGG 0.681953 tig0030819:+38312 Msa1444780:CDS
CTACCACAAAGGCACCAACA+CGG 0.688875 tig0030819:-39347 Msa1444770:CDS
TCAACTACCAAAGACAGTGG+CGG 0.702577 tig0030819:+37323 Msa1444760:intron
ATAGCTACTAGCTTGAAGGG+AGG 0.713336 tig0030819:+39284 None:intergenic
AATTCAACTACCAAAGACAG+TGG 0.718095 tig0030819:+37320 Msa1444760:intron
GAAACTGGAAGTGCAAATTG+TGG 0.722800 tig0030819:+39473 None:intergenic
AGGTCGCACTGAATCACCAG+AGG 0.727478 tig0030819:-37483 Msa1444770:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTACTTTTCTTTTGTT+TGG + tig0030819:38937-38956 None:intergenic 15.0%
!!! TAAATTACTTTTCTTTTGTT+TGG + tig0030819:38937-38956 None:intergenic 15.0%
!! TAAAGATGAAATTACAATCA+GGG + tig0030819:37689-37708 None:intergenic 20.0%
!!! TTTTTCTCAATGTTAATGAA+TGG - tig0030819:37866-37885 Msa1444770:three_prime_UTR 20.0%
!! AAATCAAATATATCTCTCTT+TGG - tig0030819:38114-38133 Msa1444770:three_prime_UTR 20.0%
!!! ATGTATTTTTTTGACAGTAA+AGG - tig0030819:38216-38235 Msa1444770:three_prime_UTR 20.0%
!! TTAAAATAAATGTTGATGCA+GGG + tig0030819:38648-38667 None:intergenic 20.0%
!! ATTAAAATAAATGTTGATGC+AGG + tig0030819:38649-38668 None:intergenic 20.0%
!! TGGAATTAAGAAAGTTAAAA+AGG - tig0030819:38853-38872 Msa1444770:intron 20.0%
!! AGGAATTACTAAAGTTAAAA+AGG - tig0030819:38873-38892 Msa1444770:intron 20.0%
!! ACTAAAGTTAAAAAGGATTA+AGG - tig0030819:38880-38899 Msa1444770:intron 20.0%
!! TAATTTACACTTACTCAATT+AGG - tig0030819:38950-38969 Msa1444770:CDS 20.0%
!! AATTTACACTTACTCAATTA+GGG - tig0030819:38951-38970 Msa1444770:CDS 20.0%
!! TAAAGATGAAATTACAATCA+GGG + tig0030819:37689-37708 None:intergenic 20.0%
!!! TTTTTCTCAATGTTAATGAA+TGG - tig0030819:37866-37885 Msa1444770:three_prime_UTR 20.0%
!! AAATCAAATATATCTCTCTT+TGG - tig0030819:38114-38133 Msa1444770:three_prime_UTR 20.0%
!!! ATGTATTTTTTTGACAGTAA+AGG - tig0030819:38216-38235 Msa1444770:three_prime_UTR 20.0%
!! TTAAAATAAATGTTGATGCA+GGG + tig0030819:38648-38667 None:intergenic 20.0%
!! ATTAAAATAAATGTTGATGC+AGG + tig0030819:38649-38668 None:intergenic 20.0%
!! TGGAATTAAGAAAGTTAAAA+AGG - tig0030819:38853-38872 Msa1444770:intron 20.0%
!! AGGAATTACTAAAGTTAAAA+AGG - tig0030819:38873-38892 Msa1444770:intron 20.0%
!! ACTAAAGTTAAAAAGGATTA+AGG - tig0030819:38880-38899 Msa1444770:intron 20.0%
!! TAATTTACACTTACTCAATT+AGG - tig0030819:38950-38969 Msa1444770:CDS 20.0%
!! AATTTACACTTACTCAATTA+GGG - tig0030819:38951-38970 Msa1444770:CDS 20.0%
! GTAAAGATGAAATTACAATC+AGG + tig0030819:37690-37709 None:intergenic 25.0%
! TCTTTGGTATTGTATGAATA+AGG - tig0030819:38130-38149 Msa1444770:three_prime_UTR 25.0%
! AATTATGACTTCTCTTTGTA+AGG + tig0030819:38266-38285 Msa1444780:CDS 25.0%
! TACAAAGAGAAGTCATAATT+TGG - tig0030819:38266-38285 Msa1444770:three_prime_UTR 25.0%
!!! TTTGATTTTGGAATGTTTTG+GGG + tig0030819:38753-38772 None:intergenic 25.0%
!!! CTTTGATTTTGGAATGTTTT+GGG + tig0030819:38754-38773 None:intergenic 25.0%
! AAAATCAAAGCAAAAGGAAT+CGG - tig0030819:38764-38783 Msa1444770:exon 25.0%
! TAATGATGAATGAATCAGAT+TGG - tig0030819:38833-38852 Msa1444770:intron 25.0%
!!! TTTGGTAATCATCTTTTGTT+TGG + tig0030819:38919-38938 None:intergenic 25.0%
!! TGTAATTTTCAAATTAGCTC+AGG - tig0030819:39200-39219 Msa1444770:CDS 25.0%
!! GTAATTTTCAAATTAGCTCA+GGG - tig0030819:39201-39220 Msa1444770:CDS 25.0%
!! TAATTTTCAAATTAGCTCAG+GGG - tig0030819:39202-39221 Msa1444770:CDS 25.0%
! TACTTTCAACCCTAAATTAA+TGG - tig0030819:39233-39252 Msa1444770:CDS 25.0%
! ACTTTCAACCCTAAATTAAT+GGG - tig0030819:39234-39253 Msa1444770:CDS 25.0%
! GTAAAGATGAAATTACAATC+AGG + tig0030819:37690-37709 None:intergenic 25.0%
! TCTTTGGTATTGTATGAATA+AGG - tig0030819:38130-38149 Msa1444770:three_prime_UTR 25.0%
! AATTATGACTTCTCTTTGTA+AGG + tig0030819:38266-38285 Msa1444780:CDS 25.0%
! TACAAAGAGAAGTCATAATT+TGG - tig0030819:38266-38285 Msa1444770:three_prime_UTR 25.0%
!!! TTTGATTTTGGAATGTTTTG+GGG + tig0030819:38753-38772 None:intergenic 25.0%
!!! CTTTGATTTTGGAATGTTTT+GGG + tig0030819:38754-38773 None:intergenic 25.0%
! AAAATCAAAGCAAAAGGAAT+CGG - tig0030819:38764-38783 Msa1444770:exon 25.0%
! TAATGATGAATGAATCAGAT+TGG - tig0030819:38833-38852 Msa1444770:intron 25.0%
!!! TTTGGTAATCATCTTTTGTT+TGG + tig0030819:38919-38938 None:intergenic 25.0%
!! TGTAATTTTCAAATTAGCTC+AGG - tig0030819:39200-39219 Msa1444770:CDS 25.0%
!! GTAATTTTCAAATTAGCTCA+GGG - tig0030819:39201-39220 Msa1444770:CDS 25.0%
!! TAATTTTCAAATTAGCTCAG+GGG - tig0030819:39202-39221 Msa1444770:CDS 25.0%
! TACTTTCAACCCTAAATTAA+TGG - tig0030819:39233-39252 Msa1444770:CDS 25.0%
! ACTTTCAACCCTAAATTAAT+GGG - tig0030819:39234-39253 Msa1444770:CDS 25.0%
TAGACAAGTTCTTATAAGGT+TGG - tig0030819:37462-37481 Msa1444770:three_prime_UTR 30.0%
TTGCACAACAAGTTTCAATA+TGG - tig0030819:37519-37538 Msa1444770:three_prime_UTR 30.0%
! GGAAATGACAAAAGAGATTT+TGG - tig0030819:37611-37630 Msa1444770:three_prime_UTR 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - tig0030819:37629-37648 Msa1444770:three_prime_UTR 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - tig0030819:37701-37720 Msa1444770:three_prime_UTR 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + tig0030819:37712-37731 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - tig0030819:37800-37819 Msa1444770:three_prime_UTR 30.0%
TGGTAACTCATTATCAAGAA+AGG + tig0030819:37907-37926 None:intergenic 30.0%
! TTTGAAGCAAAAAAGTCAAG+AGG + tig0030819:38026-38045 None:intergenic 30.0%
AGAGAAGTCATAATTTGGTT+AGG - tig0030819:38271-38290 Msa1444770:three_prime_UTR 30.0%
! ACAGTAGTAAGGTCTTTTTA+TGG + tig0030819:38466-38485 None:intergenic 30.0%
! TTCTCCTTGTTTCAGAAAAT+AGG - tig0030819:38566-38585 Msa1444770:three_prime_UTR 30.0%
!!! TTGTCCTATTTTCTGAAACA+AGG + tig0030819:38573-38592 None:intergenic 30.0%
TTTCTCAAATGAAACAGGTT+GGG + tig0030819:38623-38642 None:intergenic 30.0%
!!! GCTTTGATTTTGGAATGTTT+TGG + tig0030819:38755-38774 None:intergenic 30.0%
CATTCCAAAATCAAAGCAAA+AGG - tig0030819:38758-38777 Msa1444770:three_prime_UTR 30.0%
!! GATTCCTTTTGCTTTGATTT+TGG + tig0030819:38765-38784 None:intergenic 30.0%
! CACGACATTGGTAATTATTT+AGG - tig0030819:39354-39373 Msa1444770:CDS 30.0%
! TGTTATTTAACCACATGTGT+CGG - tig0030819:39394-39413 Msa1444770:CDS 30.0%
TAGACAAGTTCTTATAAGGT+TGG - tig0030819:37462-37481 Msa1444770:three_prime_UTR 30.0%
TTGCACAACAAGTTTCAATA+TGG - tig0030819:37519-37538 Msa1444770:three_prime_UTR 30.0%
! GGAAATGACAAAAGAGATTT+TGG - tig0030819:37611-37630 Msa1444770:three_prime_UTR 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - tig0030819:37629-37648 Msa1444770:three_prime_UTR 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - tig0030819:37701-37720 Msa1444770:three_prime_UTR 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + tig0030819:37712-37731 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - tig0030819:37800-37819 Msa1444770:three_prime_UTR 30.0%
TGGTAACTCATTATCAAGAA+AGG + tig0030819:37907-37926 None:intergenic 30.0%
! TTTGAAGCAAAAAAGTCAAG+AGG + tig0030819:38026-38045 None:intergenic 30.0%
AGAGAAGTCATAATTTGGTT+AGG - tig0030819:38271-38290 Msa1444770:three_prime_UTR 30.0%
! ACAGTAGTAAGGTCTTTTTA+TGG + tig0030819:38466-38485 None:intergenic 30.0%
! TTCTCCTTGTTTCAGAAAAT+AGG - tig0030819:38566-38585 Msa1444770:three_prime_UTR 30.0%
!!! TTGTCCTATTTTCTGAAACA+AGG + tig0030819:38573-38592 None:intergenic 30.0%
TTTCTCAAATGAAACAGGTT+GGG + tig0030819:38623-38642 None:intergenic 30.0%
!!! GCTTTGATTTTGGAATGTTT+TGG + tig0030819:38755-38774 None:intergenic 30.0%
CATTCCAAAATCAAAGCAAA+AGG - tig0030819:38758-38777 Msa1444770:three_prime_UTR 30.0%
!! GATTCCTTTTGCTTTGATTT+TGG + tig0030819:38765-38784 None:intergenic 30.0%
! CACGACATTGGTAATTATTT+AGG - tig0030819:39354-39373 Msa1444770:CDS 30.0%
! TGTTATTTAACCACATGTGT+CGG - tig0030819:39394-39413 Msa1444770:CDS 30.0%
! TTCATAGCTACTAGCTTGAA+GGG + tig0030819:37335-37354 Msa1444760:intron 35.0%
AGCTTGAGGATAGAGTATAA+AGG + tig0030819:37436-37455 Msa1444760:intron 35.0%
TTATACTCTATCCTCAAGCT+TGG - tig0030819:37436-37455 Msa1444770:three_prime_UTR 35.0%
GTGCTAGACAAGTTCTTATA+AGG - tig0030819:37458-37477 Msa1444770:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - tig0030819:37540-37559 Msa1444770:three_prime_UTR 35.0%
CTGAGAAAAACAACATACCT+TGG - tig0030819:37586-37605 Msa1444770:three_prime_UTR 35.0%
AGAAAAACAACATACCTTGG+AGG - tig0030819:37589-37608 Msa1444770:three_prime_UTR 35.0%
GAAAAACAACATACCTTGGA+GGG - tig0030819:37590-37609 Msa1444770:three_prime_UTR 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - tig0030819:37635-37654 Msa1444770:three_prime_UTR 35.0%
AATCAGGGTATACTAAAGAC+TGG + tig0030819:37674-37693 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - tig0030819:37740-37759 Msa1444770:three_prime_UTR 35.0%
! GTTTCAACTGTATTGATGGA+AGG - tig0030819:37744-37763 Msa1444770:three_prime_UTR 35.0%
CCTTCATCATATGCATGAAA+TGG + tig0030819:37802-37821 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - tig0030819:37799-37818 Msa1444770:three_prime_UTR 35.0%
ATGATGAAGGGAATCTTACA+TGG - tig0030819:37812-37831 Msa1444770:three_prime_UTR 35.0%
ACCATAGATATGTTCCTCTT+TGG - tig0030819:37923-37942 Msa1444770:three_prime_UTR 35.0%
ACCAAAGAGGAACATATCTA+TGG + tig0030819:37927-37946 None:intergenic 35.0%
!!! GGAGCCAGACAAATTTTTTT+GGG - tig0030819:37954-37973 Msa1444770:three_prime_UTR 35.0%
CCATCCCAAAAAAATTTGTC+TGG + tig0030819:37961-37980 None:intergenic 35.0%
!!! CCAGACAAATTTTTTTGGGA+TGG - tig0030819:37958-37977 Msa1444770:three_prime_UTR 35.0%
! CGTTTTCCAAGAATTGATAG+CGG + tig0030819:37984-38003 None:intergenic 35.0%
TGAGAAGCAAAACAAGTTAC+TGG - tig0030819:38193-38212 Msa1444770:three_prime_UTR 35.0%
! TTTCTGTTGGTTGTATGGTA+TGG + tig0030819:38309-38328 Msa1444780:CDS 35.0%
! ATCTCTTTCTGTTGGTTGTA+TGG + tig0030819:38314-38333 Msa1444780:CDS 35.0%
TGATTGGTAGAGACAATTGT+GGG + tig0030819:38597-38616 None:intergenic 35.0%
TTGATTGGTAGAGACAATTG+TGG + tig0030819:38598-38617 None:intergenic 35.0%
TTCTCAAATGAAACAGGTTG+GGG + tig0030819:38622-38641 None:intergenic 35.0%
GTTTCTCAAATGAAACAGGT+TGG + tig0030819:38624-38643 None:intergenic 35.0%
! AAAGCAAAAGGAATCGGTTT+GGG - tig0030819:38770-38789 Msa1444770:exon 35.0%
TCAGCCTTCAGAAAAGAAAA+TGG - tig0030819:39171-39190 Msa1444770:CDS 35.0%
!!! CATGCCATTTTCTTTTCTGA+AGG + tig0030819:39178-39197 None:intergenic 35.0%
TCAACCCTAAATTAATGGGA+TGG - tig0030819:39238-39257 Msa1444770:CDS 35.0%
ATGGCCATCCCATTAATTTA+GGG + tig0030819:39245-39264 None:intergenic 35.0%
AATTCAACTACCAAAGACAG+TGG + tig0030819:39296-39315 None:intergenic 35.0%
ATAATTACCAATGTCGTGTC+CGG + tig0030819:39352-39371 None:intergenic 35.0%
! ACACCATCAATCTAAAGTGT+CGG - tig0030819:39446-39465 Msa1444770:intron 35.0%
! AAACTGGAAGTGCAAATTGT+GGG + tig0030819:37142-37161 Msa1444760:intron 35.0%
! TTCATAGCTACTAGCTTGAA+GGG + tig0030819:37335-37354 Msa1444760:intron 35.0%
AGCTTGAGGATAGAGTATAA+AGG + tig0030819:37436-37455 Msa1444760:intron 35.0%
TTATACTCTATCCTCAAGCT+TGG - tig0030819:37436-37455 Msa1444770:three_prime_UTR 35.0%
GTGCTAGACAAGTTCTTATA+AGG - tig0030819:37458-37477 Msa1444770:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - tig0030819:37540-37559 Msa1444770:three_prime_UTR 35.0%
CTGAGAAAAACAACATACCT+TGG - tig0030819:37586-37605 Msa1444770:three_prime_UTR 35.0%
AGAAAAACAACATACCTTGG+AGG - tig0030819:37589-37608 Msa1444770:three_prime_UTR 35.0%
GAAAAACAACATACCTTGGA+GGG - tig0030819:37590-37609 Msa1444770:three_prime_UTR 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - tig0030819:37635-37654 Msa1444770:three_prime_UTR 35.0%
AATCAGGGTATACTAAAGAC+TGG + tig0030819:37674-37693 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - tig0030819:37740-37759 Msa1444770:three_prime_UTR 35.0%
! GTTTCAACTGTATTGATGGA+AGG - tig0030819:37744-37763 Msa1444770:three_prime_UTR 35.0%
CCTTCATCATATGCATGAAA+TGG + tig0030819:37802-37821 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - tig0030819:37799-37818 Msa1444770:three_prime_UTR 35.0%
ATGATGAAGGGAATCTTACA+TGG - tig0030819:37812-37831 Msa1444770:three_prime_UTR 35.0%
ACCATAGATATGTTCCTCTT+TGG - tig0030819:37923-37942 Msa1444770:three_prime_UTR 35.0%
ACCAAAGAGGAACATATCTA+TGG + tig0030819:37927-37946 None:intergenic 35.0%
!!! GGAGCCAGACAAATTTTTTT+GGG - tig0030819:37954-37973 Msa1444770:three_prime_UTR 35.0%
CCATCCCAAAAAAATTTGTC+TGG + tig0030819:37961-37980 None:intergenic 35.0%
!!! CCAGACAAATTTTTTTGGGA+TGG - tig0030819:37958-37977 Msa1444770:three_prime_UTR 35.0%
! CGTTTTCCAAGAATTGATAG+CGG + tig0030819:37984-38003 None:intergenic 35.0%
TGAGAAGCAAAACAAGTTAC+TGG - tig0030819:38193-38212 Msa1444770:three_prime_UTR 35.0%
! TTTCTGTTGGTTGTATGGTA+TGG + tig0030819:38309-38328 Msa1444780:CDS 35.0%
! ATCTCTTTCTGTTGGTTGTA+TGG + tig0030819:38314-38333 Msa1444780:CDS 35.0%
TGATTGGTAGAGACAATTGT+GGG + tig0030819:38597-38616 None:intergenic 35.0%
TTGATTGGTAGAGACAATTG+TGG + tig0030819:38598-38617 None:intergenic 35.0%
TTCTCAAATGAAACAGGTTG+GGG + tig0030819:38622-38641 None:intergenic 35.0%
GTTTCTCAAATGAAACAGGT+TGG + tig0030819:38624-38643 None:intergenic 35.0%
! AAAGCAAAAGGAATCGGTTT+GGG - tig0030819:38770-38789 Msa1444770:exon 35.0%
TCAGCCTTCAGAAAAGAAAA+TGG - tig0030819:39171-39190 Msa1444770:CDS 35.0%
!!! CATGCCATTTTCTTTTCTGA+AGG + tig0030819:39178-39197 None:intergenic 35.0%
TCAACCCTAAATTAATGGGA+TGG - tig0030819:39238-39257 Msa1444770:CDS 35.0%
ATGGCCATCCCATTAATTTA+GGG + tig0030819:39245-39264 None:intergenic 35.0%
AATTCAACTACCAAAGACAG+TGG + tig0030819:39296-39315 None:intergenic 35.0%
ATAATTACCAATGTCGTGTC+CGG + tig0030819:39352-39371 None:intergenic 35.0%
! ACACCATCAATCTAAAGTGT+CGG - tig0030819:39446-39465 Msa1444770:intron 35.0%
! GAAACTGGAAGTGCAAATTG+TGG + tig0030819:37143-37162 Msa1444760:intron 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + tig0030819:37336-37355 Msa1444760:intron 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - tig0030819:37337-37356 Msa1444770:three_prime_UTR 40.0%
TAGCTATGAAGAAGGAAAGC+TGG - tig0030819:37345-37364 Msa1444770:three_prime_UTR 40.0%
GAAAGCTGGTAAGACCAAAA+TGG - tig0030819:37359-37378 Msa1444770:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + tig0030819:37492-37511 Msa1444760:CDS 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + tig0030819:37606-37625 Msa1444760:CDS 40.0%
ATATGTTCCTCTTTGGTCAG+TGG - tig0030819:37930-37949 Msa1444770:three_prime_UTR 40.0%
!!! CGGAGCCAGACAAATTTTTT+TGG - tig0030819:37953-37972 Msa1444770:three_prime_UTR 40.0%
GTTGGTTGTATGGTATGGAA+AGG + tig0030819:38304-38323 Msa1444780:CDS 40.0%
ACCAACAGAAAGAGATAAGC+AGG - tig0030819:38318-38337 Msa1444770:three_prime_UTR 40.0%
GTAGAATCTCATTGTCGAGA+TGG + tig0030819:38497-38516 None:intergenic 40.0%
CCTTTAGTAGCAGAAACCAT+GGG + tig0030819:38529-38548 None:intergenic 40.0%
TCCTTTAGTAGCAGAAACCA+TGG + tig0030819:38530-38549 None:intergenic 40.0%
GGGTGTTTCTCAAATGAAAC+AGG + tig0030819:38628-38647 None:intergenic 40.0%
!!! TTTTGGGGTTGTGTACGTTT+TGG + tig0030819:38738-38757 None:intergenic 40.0%
CAAAGCAAAAGGAATCGGTT+TGG - tig0030819:38769-38788 Msa1444770:exon 40.0%
CTCAATTAGGGTTTGTGAGA+TGG - tig0030819:38963-38982 Msa1444770:CDS 40.0%
ACTGAAAGTGGGTAACTGAA+AGG - tig0030819:39016-39035 Msa1444770:CDS 40.0%
CATGGCCATCCCATTAATTT+AGG + tig0030819:39246-39265 None:intergenic 40.0%
CTAAATTAATGGGATGGCCA+TGG - tig0030819:39244-39263 Msa1444770:CDS 40.0%
!! TGAAGCATTGACACAAACAC+CGG - tig0030819:39330-39349 Msa1444770:CDS 40.0%
! GAAACTGGAAGTGCAAATTG+TGG + tig0030819:37143-37162 Msa1444760:intron 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + tig0030819:37336-37355 Msa1444760:intron 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - tig0030819:37337-37356 Msa1444770:three_prime_UTR 40.0%
TAGCTATGAAGAAGGAAAGC+TGG - tig0030819:37345-37364 Msa1444770:three_prime_UTR 40.0%
GAAAGCTGGTAAGACCAAAA+TGG - tig0030819:37359-37378 Msa1444770:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + tig0030819:37492-37511 Msa1444760:CDS 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + tig0030819:37606-37625 Msa1444760:CDS 40.0%
ATATGTTCCTCTTTGGTCAG+TGG - tig0030819:37930-37949 Msa1444770:three_prime_UTR 40.0%
!!! CGGAGCCAGACAAATTTTTT+TGG - tig0030819:37953-37972 Msa1444770:three_prime_UTR 40.0%
GTTGGTTGTATGGTATGGAA+AGG + tig0030819:38304-38323 Msa1444780:CDS 40.0%
ACCAACAGAAAGAGATAAGC+AGG - tig0030819:38318-38337 Msa1444770:three_prime_UTR 40.0%
GTAGAATCTCATTGTCGAGA+TGG + tig0030819:38497-38516 None:intergenic 40.0%
CCTTTAGTAGCAGAAACCAT+GGG + tig0030819:38529-38548 None:intergenic 40.0%
TCCTTTAGTAGCAGAAACCA+TGG + tig0030819:38530-38549 None:intergenic 40.0%
GGGTGTTTCTCAAATGAAAC+AGG + tig0030819:38628-38647 None:intergenic 40.0%
!!! TTTTGGGGTTGTGTACGTTT+TGG + tig0030819:38738-38757 None:intergenic 40.0%
CAAAGCAAAAGGAATCGGTT+TGG - tig0030819:38769-38788 Msa1444770:exon 40.0%
CTCAATTAGGGTTTGTGAGA+TGG - tig0030819:38963-38982 Msa1444770:CDS 40.0%
ACTGAAAGTGGGTAACTGAA+AGG - tig0030819:39016-39035 Msa1444770:CDS 40.0%
CATGGCCATCCCATTAATTT+AGG + tig0030819:39246-39265 None:intergenic 40.0%
CTAAATTAATGGGATGGCCA+TGG - tig0030819:39244-39263 Msa1444770:CDS 40.0%
!! TGAAGCATTGACACAAACAC+CGG - tig0030819:39330-39349 Msa1444770:CDS 40.0%
TGTGTGTGTGTGTGTGAAAC+TGG + tig0030819:37158-37177 Msa1444760:intron 45.0%
ACACACACACACACACACAA+TGG - tig0030819:37183-37202 Msa1444770:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - tig0030819:37232-37251 Msa1444770:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + tig0030819:37320-37339 Msa1444760:intron 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + tig0030819:37332-37351 Msa1444760:intron 45.0%
CTGGTAAGACCAAAATGGAC+TGG - tig0030819:37364-37383 Msa1444770:three_prime_UTR 45.0%
TGAAGGGAATCTTACATGGC+TGG - tig0030819:37816-37835 Msa1444770:three_prime_UTR 45.0%
GCCTGCTTATCTCTTTCTGT+TGG + tig0030819:38322-38341 Msa1444780:CDS 45.0%
CAATGTTGTTGCTCATAGCC+TGG + tig0030819:38344-38363 Msa1444780:CDS 45.0%
TGGATGCTGAGACAGTAGTA+AGG + tig0030819:38477-38496 None:intergenic 45.0%
CCCATGGTTTCTGCTACTAA+AGG - tig0030819:38526-38545 Msa1444770:three_prime_UTR 45.0%
! GAAACAGGTTGGGGATTGAT+TGG + tig0030819:38613-38632 None:intergenic 45.0%
TTCAGAGATCGCACTGAAAG+TGG - tig0030819:39004-39023 Msa1444770:CDS 45.0%
TCAGAGATCGCACTGAAAGT+GGG - tig0030819:39005-39024 Msa1444770:CDS 45.0%
ATTGCGGGCTTCAATTTCGA+CGG - tig0030819:39049-39068 Msa1444770:intron 45.0%
TGAATCACCAGAGGAGAAGA+AGG - tig0030819:39139-39158 Msa1444770:intron 45.0%
GAATCACCAGAGGAGAAGAA+GGG - tig0030819:39140-39159 Msa1444770:intron 45.0%
AATCACCAGAGGAGAAGAAG+GGG - tig0030819:39141-39160 Msa1444770:intron 45.0%
TCAACTACCAAAGACAGTGG+CGG + tig0030819:39293-39312 None:intergenic 45.0%
! GCACCGACACTTTAGATTGA+TGG + tig0030819:39452-39471 None:intergenic 45.0%
TGTGTGTGTGTGTGTGAAAC+TGG + tig0030819:37158-37177 Msa1444760:intron 45.0%
ACACACACACACACACACAA+TGG - tig0030819:37183-37202 Msa1444770:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - tig0030819:37232-37251 Msa1444770:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + tig0030819:37320-37339 Msa1444760:intron 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + tig0030819:37332-37351 Msa1444760:intron 45.0%
CTGGTAAGACCAAAATGGAC+TGG - tig0030819:37364-37383 Msa1444770:three_prime_UTR 45.0%
TGAAGGGAATCTTACATGGC+TGG - tig0030819:37816-37835 Msa1444770:three_prime_UTR 45.0%
GCCTGCTTATCTCTTTCTGT+TGG + tig0030819:38322-38341 Msa1444780:CDS 45.0%
CAATGTTGTTGCTCATAGCC+TGG + tig0030819:38344-38363 Msa1444780:CDS 45.0%
TGGATGCTGAGACAGTAGTA+AGG + tig0030819:38477-38496 None:intergenic 45.0%
CCCATGGTTTCTGCTACTAA+AGG - tig0030819:38526-38545 Msa1444770:three_prime_UTR 45.0%
! GAAACAGGTTGGGGATTGAT+TGG + tig0030819:38613-38632 None:intergenic 45.0%
TTCAGAGATCGCACTGAAAG+TGG - tig0030819:39004-39023 Msa1444770:CDS 45.0%
TCAGAGATCGCACTGAAAGT+GGG - tig0030819:39005-39024 Msa1444770:CDS 45.0%
ATTGCGGGCTTCAATTTCGA+CGG - tig0030819:39049-39068 Msa1444770:intron 45.0%
TGAATCACCAGAGGAGAAGA+AGG - tig0030819:39139-39158 Msa1444770:intron 45.0%
GAATCACCAGAGGAGAAGAA+GGG - tig0030819:39140-39159 Msa1444770:intron 45.0%
AATCACCAGAGGAGAAGAAG+GGG - tig0030819:39141-39160 Msa1444770:intron 45.0%
TCAACTACCAAAGACAGTGG+CGG + tig0030819:39293-39312 None:intergenic 45.0%
! GCACCGACACTTTAGATTGA+TGG + tig0030819:39452-39471 None:intergenic 45.0%
GCGGGGAGATTAATGATGAG+AGG + tig0030819:37231-37250 Msa1444760:intron 50.0%
CATCACCACCACTACCACAA+AGG - tig0030819:37255-37274 Msa1444770:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + tig0030819:37266-37285 Msa1444760:intron 50.0%
!! CTACCACAAAGGCACCAACA+CGG - tig0030819:37266-37285 Msa1444770:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + tig0030819:37376-37395 Msa1444760:intron 50.0%
CTTGTCTAGCACCAAGCTTG+AGG + tig0030819:37450-37469 Msa1444760:intron 50.0%
TGTTCCTCTTTGGTCAGTGG+CGG - tig0030819:37933-37952 Msa1444770:three_prime_UTR 50.0%
GGATGGCCGCTATCAATTCT+TGG - tig0030819:37975-37994 Msa1444770:three_prime_UTR 50.0%
CAGAAAGAGATAAGCAGGCC+AGG - tig0030819:38323-38342 Msa1444770:three_prime_UTR 50.0%
ATTCTACCATCGCAGACCCA+TGG - tig0030819:38510-38529 Msa1444770:three_prime_UTR 50.0%
AGTGGGTAACTGAAAGGTCG+TGG - tig0030819:39022-39041 Msa1444770:CDS 50.0%
TTTCGACGGAGAGGTAGAGA+TGG - tig0030819:39063-39082 Msa1444770:intron 50.0%
ACAAACACCGGACACGACAT+TGG - tig0030819:39342-39361 Msa1444770:CDS 50.0%
GTGTGGACACTGACACATGT+TGG - tig0030819:39421-39440 Msa1444770:exon 50.0%
GCGGGGAGATTAATGATGAG+AGG + tig0030819:37231-37250 Msa1444760:intron 50.0%
CATCACCACCACTACCACAA+AGG - tig0030819:37255-37274 Msa1444770:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + tig0030819:37266-37285 Msa1444760:intron 50.0%
!! CTACCACAAAGGCACCAACA+CGG - tig0030819:37266-37285 Msa1444770:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + tig0030819:37376-37395 Msa1444760:intron 50.0%
CTTGTCTAGCACCAAGCTTG+AGG + tig0030819:37450-37469 Msa1444760:intron 50.0%
TGTTCCTCTTTGGTCAGTGG+CGG - tig0030819:37933-37952 Msa1444770:three_prime_UTR 50.0%
GGATGGCCGCTATCAATTCT+TGG - tig0030819:37975-37994 Msa1444770:three_prime_UTR 50.0%
CAGAAAGAGATAAGCAGGCC+AGG - tig0030819:38323-38342 Msa1444770:three_prime_UTR 50.0%
ATTCTACCATCGCAGACCCA+TGG - tig0030819:38510-38529 Msa1444770:three_prime_UTR 50.0%
AGTGGGTAACTGAAAGGTCG+TGG - tig0030819:39022-39041 Msa1444770:CDS 50.0%
TTTCGACGGAGAGGTAGAGA+TGG - tig0030819:39063-39082 Msa1444770:intron 50.0%
ACAAACACCGGACACGACAT+TGG - tig0030819:39342-39361 Msa1444770:CDS 50.0%
GTGTGGACACTGACACATGT+TGG - tig0030819:39421-39440 Msa1444770:exon 50.0%
! TAGTGGTGGTGATGCCATGC+GGG + tig0030819:37249-37268 Msa1444760:intron 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + tig0030819:37250-37269 Msa1444760:intron 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + tig0030819:37263-37282 Msa1444760:intron 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - tig0030819:37387-37406 Msa1444770:three_prime_UTR 55.0%
CAGAAACCATGGGTCTGCGA+TGG + tig0030819:38519-38538 None:intergenic 55.0%
GAAAGGTCGTGGCGTGATTG+CGG - tig0030819:39033-39052 Msa1444770:CDS 55.0%
AAAGGTCGTGGCGTGATTGC+GGG - tig0030819:39034-39053 Msa1444770:CDS 55.0%
GGGCTTCAATTTCGACGGAG+AGG - tig0030819:39054-39073 Msa1444770:intron 55.0%
GGTAGAGATGGCGACGAACA+CGG - tig0030819:39075-39094 Msa1444770:intron 55.0%
GTGTGACTGGGGATAGGTGA+TGG - tig0030819:39103-39122 Msa1444770:intron 55.0%
!! GACTGGGGATAGGTGATGGA+TGG - tig0030819:39107-39126 Msa1444770:intron 55.0%
!! TGGGGATAGGTGATGGATGG+AGG - tig0030819:39110-39129 Msa1444770:intron 55.0%
AGGTCGCACTGAATCACCAG+AGG - tig0030819:39130-39149 Msa1444770:intron 55.0%
! TAGTGGTGGTGATGCCATGC+GGG + tig0030819:37249-37268 Msa1444760:intron 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + tig0030819:37250-37269 Msa1444760:intron 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + tig0030819:37263-37282 Msa1444760:intron 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - tig0030819:37387-37406 Msa1444770:three_prime_UTR 55.0%
CAGAAACCATGGGTCTGCGA+TGG + tig0030819:38519-38538 None:intergenic 55.0%
GAAAGGTCGTGGCGTGATTG+CGG - tig0030819:39033-39052 Msa1444770:CDS 55.0%
AAAGGTCGTGGCGTGATTGC+GGG - tig0030819:39034-39053 Msa1444770:CDS 55.0%
GGGCTTCAATTTCGACGGAG+AGG - tig0030819:39054-39073 Msa1444770:intron 55.0%
GGTAGAGATGGCGACGAACA+CGG - tig0030819:39075-39094 Msa1444770:intron 55.0%
GTGTGACTGGGGATAGGTGA+TGG - tig0030819:39103-39122 Msa1444770:intron 55.0%
!! GACTGGGGATAGGTGATGGA+TGG - tig0030819:39107-39126 Msa1444770:intron 55.0%
!! TGGGGATAGGTGATGGATGG+AGG - tig0030819:39110-39129 Msa1444770:intron 55.0%
AGGTCGCACTGAATCACCAG+AGG - tig0030819:39130-39149 Msa1444770:intron 55.0%
! AGTGGTGGTGATGCCATGCG+GGG + tig0030819:37248-37267 Msa1444760:intron 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + tig0030819:37272-37291 Msa1444760:intron 60.0%
TCACGTGGTGGTTCACGCTG+CGG - tig0030819:37291-37310 Msa1444770:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + tig0030819:37397-37416 Msa1444760:intron 60.0%
AACACGGTCGCGGTGTGACT+GGG - tig0030819:39091-39110 Msa1444770:intron 60.0%
CGTGACCCCTTCTTCTCCTC+TGG + tig0030819:39149-39168 None:intergenic 60.0%
CCACACGACACCGACACATG+TGG + tig0030819:39407-39426 None:intergenic 60.0%
!! CCACATGTGTCGGTGTCGTG+TGG - tig0030819:39404-39423 Msa1444770:CDS 60.0%
! AGTGGTGGTGATGCCATGCG+GGG + tig0030819:37248-37267 Msa1444760:intron 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + tig0030819:37272-37291 Msa1444760:intron 60.0%
TCACGTGGTGGTTCACGCTG+CGG - tig0030819:37291-37310 Msa1444770:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + tig0030819:37397-37416 Msa1444760:intron 60.0%
AACACGGTCGCGGTGTGACT+GGG - tig0030819:39091-39110 Msa1444770:intron 60.0%
CGTGACCCCTTCTTCTCCTC+TGG + tig0030819:39149-39168 None:intergenic 60.0%
CCACACGACACCGACACATG+TGG + tig0030819:39407-39426 None:intergenic 60.0%
!! CCACATGTGTCGGTGTCGTG+TGG - tig0030819:39404-39423 Msa1444770:CDS 60.0%
ACCAACACGGCGTCACGTGG+TGG - tig0030819:37279-37298 Msa1444770:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + tig0030819:37283-37302 Msa1444760:intron 65.0%
GGCTCCGCCACTGACCAAAG+AGG + tig0030819:37940-37959 None:intergenic 65.0%
GATGGCGACGAACACGGTCG+CGG - tig0030819:39081-39100 Msa1444770:intron 65.0%
GAACACGGTCGCGGTGTGAC+TGG - tig0030819:39090-39109 Msa1444770:intron 65.0%
ACACGGTCGCGGTGTGACTG+GGG - tig0030819:39092-39111 Msa1444770:intron 65.0%
GTCGCGGTGTGACTGGGGAT+AGG - tig0030819:39097-39116 Msa1444770:intron 65.0%
!! GTGTGGACTGGGGTTGGCCA+TGG + tig0030819:39264-39283 None:intergenic 65.0%
!! AGCCACGTGTGGACTGGGGT+TGG + tig0030819:39270-39289 None:intergenic 65.0%
CGTGGCTCCGCCACTGTCTT+TGG - tig0030819:39283-39302 Msa1444770:CDS 65.0%
ACCAACACGGCGTCACGTGG+TGG - tig0030819:37279-37298 Msa1444770:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + tig0030819:37283-37302 Msa1444760:intron 65.0%
GGCTCCGCCACTGACCAAAG+AGG + tig0030819:37940-37959 None:intergenic 65.0%
GATGGCGACGAACACGGTCG+CGG - tig0030819:39081-39100 Msa1444770:intron 65.0%
GAACACGGTCGCGGTGTGAC+TGG - tig0030819:39090-39109 Msa1444770:intron 65.0%
ACACGGTCGCGGTGTGACTG+GGG - tig0030819:39092-39111 Msa1444770:intron 65.0%
GTCGCGGTGTGACTGGGGAT+AGG - tig0030819:39097-39116 Msa1444770:intron 65.0%
!! GTGTGGACTGGGGTTGGCCA+TGG + tig0030819:39264-39283 None:intergenic 65.0%
!! AGCCACGTGTGGACTGGGGT+TGG + tig0030819:39270-39289 None:intergenic 65.0%
CGTGGCTCCGCCACTGTCTT+TGG - tig0030819:39283-39302 Msa1444770:CDS 65.0%
GGCACCAACACGGCGTCACG+TGG - tig0030819:37276-37295 Msa1444770:three_prime_UTR 70.0%
GGCCAACCCCAGTCCACACG+TGG - tig0030819:39265-39284 Msa1444770:CDS 70.0%
! GCGGAGCCACGTGTGGACTG+GGG + tig0030819:39274-39293 None:intergenic 70.0%
GGCGGAGCCACGTGTGGACT+GGG + tig0030819:39275-39294 None:intergenic 70.0%
TGGCGGAGCCACGTGTGGAC+TGG + tig0030819:39276-39295 None:intergenic 70.0%
! GACAGTGGCGGAGCCACGTG+TGG + tig0030819:39281-39300 None:intergenic 70.0%
GGCACCAACACGGCGTCACG+TGG - tig0030819:37276-37295 Msa1444770:three_prime_UTR 70.0%
GGCCAACCCCAGTCCACACG+TGG - tig0030819:39265-39284 Msa1444770:CDS 70.0%
! GCGGAGCCACGTGTGGACTG+GGG + tig0030819:39274-39293 None:intergenic 70.0%
GGCGGAGCCACGTGTGGACT+GGG + tig0030819:39275-39294 None:intergenic 70.0%
TGGCGGAGCCACGTGTGGAC+TGG + tig0030819:39276-39295 None:intergenic 70.0%
! GACAGTGGCGGAGCCACGTG+TGG + tig0030819:39281-39300 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0030819 gene 37140 39495 37140 ID=Msa1444770;Name=Msa1444770
tig0030819 mRNA 37140 39495 37140 ID=Msa1444770-mRNA-1;Parent=Msa1444770;Name=Msa1444770-mRNA-1;_AED=0.29;_eAED=0.29;_QI=40|1|1|1|0.66|0.5|4|1643|151
tig0030819 exon 37140 38847 37140 ID=Msa1444770-mRNA-1:exon:14651;Parent=Msa1444770-mRNA-1
tig0030819 exon 38942 39054 38942 ID=Msa1444770-mRNA-1:exon:14650;Parent=Msa1444770-mRNA-1
tig0030819 exon 39156 39448 39156 ID=Msa1444770-mRNA-1:exon:14649;Parent=Msa1444770-mRNA-1
tig0030819 exon 39471 39495 39471 ID=Msa1444770-mRNA-1:exon:14648;Parent=Msa1444770-mRNA-1
tig0030819 five_prime_UTR 39471 39495 39471 ID=Msa1444770-mRNA-1:five_prime_utr;Parent=Msa1444770-mRNA-1
tig0030819 five_prime_UTR 39434 39448 39434 ID=Msa1444770-mRNA-1:five_prime_utr;Parent=Msa1444770-mRNA-1
tig0030819 CDS 39156 39433 39156 ID=Msa1444770-mRNA-1:cds;Parent=Msa1444770-mRNA-1
tig0030819 CDS 38942 39054 38942 ID=Msa1444770-mRNA-1:cds;Parent=Msa1444770-mRNA-1
tig0030819 CDS 38783 38847 38783 ID=Msa1444770-mRNA-1:cds;Parent=Msa1444770-mRNA-1
tig0030819 three_prime_UTR 37140 38782 37140 ID=Msa1444770-mRNA-1:three_prime_utr;Parent=Msa1444770-mRNA-1
Gene Sequence

>Msa1444770

ATGGCTCTGTCTTCACAACTTCAGAACCTCTCATCATTAATCTCCCCGCATGGCATCACCACCACTACCACAAAGGCACCAACACGGCGTCACGTGGTGGTTCACGCTGCGGCTTCCGACACAACAACCTCCCTTCAAGCTAGTAGCTATGAAGAAGGAAAGCTGGTAAGACCAAAATGGACTGGAGAGACTCCTCTCTCTCGCATGGTTCGAGCTCTCATATCTTTCAAGCCTTTATACTCTATCCTCAAGCTTGGTGCTAGACAAGTTCTTATAAGTACAGCTGAGAAAAACAACATACCTTGGAGGGAAATGACAAAAGAGATTTTGGAGTCAGAAGTTTATAAGGAGTTGGATAGCATTCAAAACCAGTCTTTAGTATACCCTGATTATTATTTGAATCCATTTCATGCATATGATGAAGGGAATCTTACATGGCTGGTAATTAAGTGCTAA

Protein sequence

>Msa1444770

MALSSQLQNLSSLISPHGITTTTTKAPTRRHVVVHAAASDTTTSLQASSYEEGKLVRPKWTGETPLSRMVRALISFKPLYSILKLGARQVLISTAEKNNIPWREMTKEILESEVYKELDSIQNQSLVYPDYYLNPFHAYDEGNLTWLVIKC*